pgen_bsseq_all_R1_bismark_bt2_pe.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 4813895 lines in total Total number of methylation call strings processed: 9627790 Final Cytosine Methylation Report ================================= Total number of C's analysed: 114238192 Total methylated C's in CpG context: 3829907 Total methylated C's in CHG context: 527305 Total methylated C's in CHH context: 913625 Total C to T conversions in CpG context: 12384033 Total C to T conversions in CHG context: 23233225 Total C to T conversions in CHH context: 73350097 C methylated in CpG context: 23.6% C methylated in CHG context: 2.2% C methylated in CHH context: 1.2%