CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 89007 177344 33.42 266351 2 80330 186921 30.06 267251 3 75054 156646 32.39 231700 4 75944 113267 40.14 189211 5 70989 99855 41.55 170844 6 70473 86075 45.02 156548 7 76470 84268 47.57 160738 8 36003 97660 26.94 133663 9 32514 92445 26.02 124959 10 32143 85105 27.41 117248 11 33415 90222 27.03 123637 12 32775 87847 27.17 120622 13 31226 89762 25.81 120988 14 29322 90871 24.40 120193 15 28325 91076 23.72 119401 16 26172 89559 22.61 115731 17 24944 89079 21.88 114023 18 25915 92459 21.89 118374 19 25351 90874 21.81 116225 20 25558 89023 22.31 114581 21 26152 89279 22.66 115431 22 25454 87600 22.51 113054 23 25001 87094 22.30 112095 24 24762 87488 22.06 112250 25 23817 88468 21.21 112285 26 24463 116766 17.32 141229 27 24146 96095 20.08 120241 28 25150 96389 20.69 121539 29 24681 93429 20.90 118110 30 24021 89523 21.16 113544 31 24639 86966 22.08 111605 32 24014 85420 21.94 109434 33 24313 87181 21.81 111494 34 25032 85967 22.55 110999 35 24148 86382 21.85 110530 36 23637 86766 21.41 110403 37 23206 86283 21.19 109489 38 23154 85117 21.39 108271 39 23589 86388 21.45 109977 40 23855 83578 22.20 107433 41 23351 82918 21.97 106269 42 24071 86294 21.81 110365 43 24036 85045 22.04 109081 44 23665 81962 22.40 105627 45 23910 82278 22.52 106188 46 24843 86429 22.33 111272 47 23881 82664 22.41 106545 48 23667 85014 21.78 108681 49 24308 82309 22.80 106617 50 23766 84792 21.89 108558 51 23752 82547 22.34 106299 52 23837 86184 21.67 110021 53 22987 81650 21.97 104637 54 22829 79999 22.20 102828 55 23198 85430 21.36 108628 56 22780 78678 22.45 101458 57 23222 80046 22.49 103268 58 23508 80708 22.56 104216 59 23181 81480 22.15 104661 60 22291 80465 21.69 102756 61 22958 83234 21.62 106192 62 22313 82907 21.21 105220 63 22197 82118 21.28 104315 64 21913 81176 21.26 103089 65 22837 82656 21.65 105493 66 22913 80424 22.17 103337 67 22757 78767 22.42 101524 68 21720 77091 21.98 98811 69 21713 75976 22.23 97689 70 21357 76622 21.80 97979 71 21039 74442 22.03 95481 72 20878 76252 21.49 97130 73 21008 75040 21.87 96048 74 21127 74135 22.18 95262 75 20208 75104 21.20 95312 76 20432 73322 21.79 93754 77 20631 71667 22.35 92298 78 20608 72801 22.06 93409 79 19960 97992 16.92 117952 80 19975 75933 20.83 95908 81 19820 77092 20.45 96912 82 19718 71826 21.54 91544 83 19660 71828 21.49 91488 84 19675 69977 21.95 89652 85 19700 69602 22.06 89302 86 19101 74638 20.38 93739 87 18828 72884 20.53 91712 88 19218 72515 20.95 91733 89 18446 67679 21.42 86125 90 18044 69267 20.67 87311 91 18155 71928 20.15 90083 92 17821 68910 20.55 86731 93 17854 66479 21.17 84333 94 18451 65237 22.05 83688 95 17735 66769 20.99 84504 96 18722 66805 21.89 85527 97 18101 83799 17.76 101900 98 16340 64004 20.34 80344 99 12897 50733 20.27 63630 100 16547 59529 21.75 76076 101 14848 58740 20.18 73588 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 140654 164968 46.02 305622 2 80424 142272 36.11 222696 3 29466 137768 17.62 167234 4 12845 152474 7.77 165319 5 7541 143466 4.99 151007 6 6068 134265 4.32 140333 7 4679 173228 2.63 177907 8 2044 185505 1.09 187549 9 1841 176736 1.03 178577 10 1712 164977 1.03 166689 11 1688 164607 1.02 166295 12 1742 165410 1.04 167152 13 1443 156600 0.91 158043 14 1331 156130 0.85 157461 15 1282 158653 0.80 159935 16 1119 156415 0.71 157534 17 1115 155442 0.71 156557 18 1057 152756 0.69 153813 19 1065 157127 0.67 158192 20 1103 165871 0.66 166974 21 1079 167737 0.64 168816 22 1186 166546 0.71 167732 23 1162 164006 0.70 165168 24 1146 166622 0.68 167768 25 1138 158445 0.71 159583 26 1129 161507 0.69 162636 27 1095 163965 0.66 165060 28 1101 163990 0.67 165091 29 1346 212629 0.63 213975 30 1176 177867 0.66 179043 31 1192 180177 0.66 181369 32 1171 168955 0.69 170126 33 1099 165538 0.66 166637 34 1116 166763 0.66 167879 35 1136 163468 0.69 164604 36 1161 167601 0.69 168762 37 1135 159040 0.71 160175 38 1142 163487 0.69 164629 39 1108 163545 0.67 164653 40 1118 161557 0.69 162675 41 1129 166764 0.67 167893 42 1144 160839 0.71 161983 43 1145 158964 0.72 160109 44 1143 163607 0.69 164750 45 1152 163264 0.70 164416 46 1222 160121 0.76 161343 47 1175 158181 0.74 159356 48 1290 207713 0.62 209003 49 1229 171395 0.71 172624 50 1320 167988 0.78 169308 51 1331 166621 0.79 167952 52 1286 162071 0.79 163357 53 1441 198023 0.72 199464 54 1315 171748 0.76 173063 55 1282 166679 0.76 167961 56 1250 161687 0.77 162937 57 1278 160361 0.79 161639 58 2063 206413 0.99 208476 59 1471 173199 0.84 174670 60 1383 171463 0.80 172846 61 1372 161684 0.84 163056 62 1399 159622 0.87 161021 63 1363 159814 0.85 161177 64 1313 158752 0.82 160065 65 1432 158617 0.89 160049 66 1390 154622 0.89 156012 67 1374 152631 0.89 154005 68 1665 194817 0.85 196482 69 1459 162889 0.89 164348 70 1469 159790 0.91 161259 71 1294 151804 0.85 153098 72 1373 150418 0.90 151791 73 1342 147807 0.90 149149 74 1393 149771 0.92 151164 75 1367 148040 0.91 149407 76 1235 140826 0.87 142061 77 1292 142034 0.90 143326 78 1364 148342 0.91 149706 79 1356 141282 0.95 142638 80 1413 151083 0.93 152496 81 1311 142282 0.91 143593 82 1347 138249 0.96 139596 83 1319 142336 0.92 143655 84 1302 141440 0.91 142742 85 1426 142878 0.99 144304 86 1353 140937 0.95 142290 87 1347 138811 0.96 140158 88 1399 133188 1.04 134587 89 1388 133586 1.03 134974 90 1370 134789 1.01 136159 91 1337 131879 1.00 133216 92 1487 133543 1.10 135030 93 1452 130473 1.10 131925 94 1469 129932 1.12 131401 95 1467 127339 1.14 128806 96 1477 127681 1.14 129158 97 1327 116474 1.13 117801 98 1255 106315 1.17 107570 99 821 68653 1.18 69474 100 854 70280 1.20 71134 101 2041 116101 1.73 118142 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 113216 168624 40.17 281840 2 49882 174975 22.18 224857 3 22026 236018 8.54 258044 4 17462 263766 6.21 281228 5 14872 318670 4.46 333542 6 11889 351808 3.27 363697 7 10744 460033 2.28 470777 8 6111 550749 1.10 556860 9 4732 466054 1.01 470786 10 4605 451079 1.01 455684 11 4856 445806 1.08 450662 12 4365 450459 0.96 454824 13 4749 457455 1.03 462204 14 4646 466120 0.99 470766 15 4366 480902 0.90 485268 16 4230 489767 0.86 493997 17 4873 543592 0.89 548465 18 4327 521420 0.82 525747 19 4214 527515 0.79 531729 20 4569 535727 0.85 540296 21 4334 534318 0.80 538652 22 4458 534133 0.83 538591 23 4647 538827 0.86 543474 24 4537 584889 0.77 589426 25 4582 551648 0.82 556230 26 4849 575201 0.84 580050 27 4541 570011 0.79 574552 28 4411 564987 0.77 569398 29 4789 554881 0.86 559670 30 4408 547152 0.80 551560 31 4229 536579 0.78 540808 32 4804 536779 0.89 541583 33 4304 535384 0.80 539688 34 4612 534779 0.86 539391 35 4741 536758 0.88 541499 36 4516 589606 0.76 594122 37 4530 555598 0.81 560128 38 4764 555366 0.85 560130 39 4414 585472 0.75 589886 40 4484 549718 0.81 554202 41 4714 544787 0.86 549501 42 4608 586855 0.78 591463 43 4832 545904 0.88 550736 44 5498 596265 0.91 601763 45 4948 590379 0.83 595327 46 5056 601636 0.83 606692 47 5037 566555 0.88 571592 48 4695 556122 0.84 560817 49 4776 539080 0.88 543856 50 4940 530614 0.92 535554 51 4432 521232 0.84 525664 52 4620 556149 0.82 560769 53 4859 528421 0.91 533280 54 4592 523570 0.87 528162 55 4642 521303 0.88 525945 56 4960 562451 0.87 567411 57 4669 589071 0.79 593740 58 5917 541914 1.08 547831 59 4990 542357 0.91 547347 60 4427 519094 0.85 523521 61 4466 517568 0.86 522034 62 4646 509910 0.90 514556 63 4386 503792 0.86 508178 64 4653 549221 0.84 553874 65 4725 511771 0.91 516496 66 4511 546499 0.82 551010 67 4556 549381 0.82 553937 68 4772 519896 0.91 524668 69 4326 508064 0.84 512390 70 4406 497375 0.88 501781 71 4781 496152 0.95 500933 72 4303 490482 0.87 494785 73 4562 485801 0.93 490363 74 4452 482810 0.91 487262 75 4281 482887 0.88 487168 76 4363 481534 0.90 485897 77 4538 477808 0.94 482346 78 4086 476083 0.85 480169 79 4154 475706 0.87 479860 80 4390 474275 0.92 478665 81 4163 464460 0.89 468623 82 4334 458782 0.94 463116 83 4519 463607 0.97 468126 84 4259 500921 0.84 505180 85 4077 458054 0.88 462131 86 4317 488133 0.88 492450 87 3931 447328 0.87 451259 88 3941 446585 0.87 450526 89 4185 447796 0.93 451981 90 4009 438195 0.91 442204 91 3922 431912 0.90 435834 92 4052 430948 0.93 435000 93 3929 426135 0.91 430064 94 3921 423046 0.92 426967 95 4167 417825 0.99 421992 96 3861 406002 0.94 409863 97 3815 397082 0.95 400897 98 3717 370065 0.99 373782 99 2537 258656 0.97 261193 100 2555 228893 1.10 231448 101 3895 393407 0.98 397302 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 53961 79188 40.53 133149 2 50095 76141 39.68 126236 3 53092 82844 39.06 135936 4 50888 91176 35.82 142064 5 21477 113124 15.96 134601 6 12275 58831 17.26 71106 7 11147 61861 15.27 73008 8 11465 62810 15.44 74275 9 10599 58628 15.31 69227 10 11765 60130 16.36 71895 11 12547 60666 17.14 73213 12 12356 62659 16.47 75015 13 12567 55517 18.46 68084 14 13484 59930 18.37 73414 15 12763 51286 19.93 64049 16 12409 50526 19.72 62935 17 14675 59687 19.73 74362 18 14101 52948 21.03 67049 19 13780 54016 20.33 67796 20 12924 50588 20.35 63512 21 13505 47432 22.16 60937 22 13403 49283 21.38 62686 23 12589 45855 21.54 58444 24 12588 49325 20.33 61913 25 14787 51672 22.25 66459 26 12388 46895 20.90 59283 27 14725 48510 23.29 63235 28 12371 42691 22.47 55062 29 12550 45421 21.65 57971 30 12112 50549 19.33 62661 31 11622 44034 20.88 55656 32 11363 40668 21.84 52031 33 12450 41163 23.22 53613 34 12082 47692 20.21 59774 35 13821 46852 22.78 60673 36 12263 45107 21.38 57370 37 12217 40271 23.28 52488 38 11316 42982 20.84 54298 39 11606 39161 22.86 50767 40 12240 40691 23.12 52931 41 11317 44305 20.35 55622 42 11391 41422 21.57 52813 43 11264 38934 22.44 50198 44 10748 37110 22.46 47858 45 12203 50208 19.55 62411 46 10365 36033 22.34 46398 47 10529 35482 22.88 46011 48 10493 37190 22.01 47683 49 10209 37328 21.48 47537 50 9754 35924 21.35 45678 51 9755 32832 22.91 42587 52 9869 40532 19.58 50401 53 10071 37513 21.16 47584 54 9745 35222 21.67 44967 55 10157 35580 22.21 45737 56 9153 35186 20.64 44339 57 9949 34542 22.36 44491 58 9250 32378 22.22 41628 59 9006 33444 21.22 42450 60 9233 34840 20.95 44073 61 8186 30936 20.92 39122 62 8385 28437 22.77 36822 63 8563 28375 23.18 36938 64 8461 27753 23.36 36214 65 8187 25594 24.24 33781 66 8649 28909 23.03 37558 67 7965 29945 21.01 37910 68 8494 33395 20.28 41889 69 7890 27403 22.36 35293 70 7589 28297 21.15 35886 71 7691 24834 23.65 32525 72 7424 24235 23.45 31659 73 7389 25031 22.79 32420 74 6829 25307 21.25 32136 75 7003 24776 22.04 31779 76 6855 23160 22.84 30015 77 6913 22689 23.35 29602 78 6936 24646 21.96 31582 79 6525 22469 22.50 28994 80 6499 21957 22.84 28456 81 6419 22699 22.04 29118 82 6348 22729 21.83 29077 83 6411 20941 23.44 27352 84 6817 22447 23.29 29264 85 6282 20837 23.16 27119 86 6071 20637 22.73 26708 87 6086 20132 23.21 26218 88 6194 20090 23.57 26284 89 6269 20465 23.45 26734 90 6157 21234 22.48 27391 91 6042 19455 23.70 25497 92 5790 19275 23.10 25065 93 5982 19812 23.19 25794 94 5923 19022 23.74 24945 95 5798 19060 23.32 24858 96 5568 18589 23.05 24157 97 5949 19216 23.64 25165 98 5332 17101 23.77 22433 99 4735 0 100.00 4735 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 19482 104950 15.66 124432 2 20710 109069 15.96 129779 3 18532 104772 15.03 123304 4 20669 109126 15.92 129795 5 1278 197766 0.64 199044 6 1106 259619 0.42 260725 7 668 131976 0.50 132644 8 736 139437 0.53 140173 9 613 128553 0.47 129166 10 643 125716 0.51 126359 11 790 141632 0.55 142422 12 654 120264 0.54 120918 13 742 138420 0.53 139162 14 660 117610 0.56 118270 15 618 113539 0.54 114157 16 580 104389 0.55 104969 17 833 122205 0.68 123038 18 605 97572 0.62 98177 19 616 97804 0.63 98420 20 538 99059 0.54 99597 21 641 99448 0.64 100089 22 570 105521 0.54 106091 23 581 95626 0.60 96207 24 576 92218 0.62 92794 25 526 91999 0.57 92525 26 611 98311 0.62 98922 27 571 89773 0.63 90344 28 541 89803 0.60 90344 29 565 95043 0.59 95608 30 540 89815 0.60 90355 31 540 87160 0.62 87700 32 543 86652 0.62 87195 33 552 101658 0.54 102210 34 475 83691 0.56 84166 35 532 86070 0.61 86602 36 524 90535 0.58 91059 37 466 87826 0.53 88292 38 528 83522 0.63 84050 39 464 86060 0.54 86524 40 532 80678 0.66 81210 41 458 73272 0.62 73730 42 454 69940 0.64 70394 43 442 72078 0.61 72520 44 424 74684 0.56 75108 45 453 67073 0.67 67526 46 407 67939 0.60 68346 47 441 69570 0.63 70011 48 415 66732 0.62 67147 49 418 67683 0.61 68101 50 397 69206 0.57 69603 51 364 66188 0.55 66552 52 424 64778 0.65 65202 53 413 68661 0.60 69074 54 428 63982 0.66 64410 55 409 62788 0.65 63197 56 402 63057 0.63 63459 57 401 61196 0.65 61597 58 412 60985 0.67 61397 59 376 63542 0.59 63918 60 400 63069 0.63 63469 61 383 62187 0.61 62570 62 390 60679 0.64 61069 63 489 60036 0.81 60525 64 308 55087 0.56 55395 65 400 56992 0.70 57392 66 337 52982 0.63 53319 67 339 56602 0.60 56941 68 348 54537 0.63 54885 69 324 54852 0.59 55176 70 330 54757 0.60 55087 71 346 56498 0.61 56844 72 298 52145 0.57 52443 73 299 50601 0.59 50900 74 284 52175 0.54 52459 75 285 50320 0.56 50605 76 270 47252 0.57 47522 77 306 51276 0.59 51582 78 317 47915 0.66 48232 79 288 47547 0.60 47835 80 272 46495 0.58 46767 81 287 45702 0.62 45989 82 284 44586 0.63 44870 83 280 45648 0.61 45928 84 299 44103 0.67 44402 85 280 46512 0.60 46792 86 272 42543 0.64 42815 87 283 42887 0.66 43170 88 266 41386 0.64 41652 89 309 42911 0.71 43220 90 294 42374 0.69 42668 91 271 44518 0.61 44789 92 220 41659 0.53 41879 93 291 39088 0.74 39379 94 264 38637 0.68 38901 95 253 39502 0.64 39755 96 238 38654 0.61 38892 97 255 37194 0.68 37449 98 185 36049 0.51 36234 99 154 0 100.00 154 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 25701 137922 15.71 163623 2 20642 115822 15.13 136464 3 21425 119842 15.17 141267 4 22091 118806 15.68 140897 5 2109 227046 0.92 229155 6 2040 315064 0.64 317104 7 2418 423752 0.57 426170 8 2522 425022 0.59 427544 9 2663 399269 0.66 401932 10 2485 398262 0.62 400747 11 2542 388235 0.65 390777 12 2584 357721 0.72 360305 13 2486 373656 0.66 376142 14 2541 378957 0.67 381498 15 2439 372667 0.65 375106 16 2368 360140 0.65 362508 17 2442 355885 0.68 358327 18 2600 375259 0.69 377859 19 2347 346889 0.67 349236 20 2472 373279 0.66 375751 21 2242 338210 0.66 340452 22 2368 338881 0.69 341249 23 2160 327483 0.66 329643 24 2139 315089 0.67 317228 25 2174 313747 0.69 315921 26 2143 305410 0.70 307553 27 2369 327224 0.72 329593 28 2090 314271 0.66 316361 29 2137 310347 0.68 312484 30 2098 299468 0.70 301566 31 2043 298988 0.68 301031 32 2012 301582 0.66 303594 33 2011 285157 0.70 287168 34 2021 280936 0.71 282957 35 2242 288237 0.77 290479 36 2111 287448 0.73 289559 37 2149 280422 0.76 282571 38 2137 300842 0.71 302979 39 1992 277678 0.71 279670 40 2002 284398 0.70 286400 41 1906 276620 0.68 278526 42 1962 273371 0.71 275333 43 1862 260749 0.71 262611 44 1824 260676 0.69 262500 45 1962 261484 0.74 263446 46 1881 267312 0.70 269193 47 1850 265374 0.69 267224 48 1874 254674 0.73 256548 49 1738 250232 0.69 251970 50 1703 244975 0.69 246678 51 1703 239176 0.71 240879 52 1552 229003 0.67 230555 53 1585 231027 0.68 232612 54 1638 226669 0.72 228307 55 1721 232975 0.73 234696 56 1545 224352 0.68 225897 57 1468 228216 0.64 229684 58 1499 222597 0.67 224096 59 1553 218181 0.71 219734 60 1570 226144 0.69 227714 61 1472 214981 0.68 216453 62 1539 209468 0.73 211007 63 1478 212919 0.69 214397 64 1379 204000 0.67 205379 65 1445 207676 0.69 209121 66 1453 205181 0.70 206634 67 1329 198802 0.66 200131 68 1452 201753 0.71 203205 69 1415 199084 0.71 200499 70 1377 194760 0.70 196137 71 1323 195508 0.67 196831 72 1360 188926 0.71 190286 73 1301 186606 0.69 187907 74 1228 184901 0.66 186129 75 1305 184781 0.70 186086 76 1232 180056 0.68 181288 77 1231 176433 0.69 177664 78 1234 177882 0.69 179116 79 1198 178911 0.67 180109 80 1223 171637 0.71 172860 81 1239 172594 0.71 173833 82 1141 169103 0.67 170244 83 1155 168453 0.68 169608 84 1141 169170 0.67 170311 85 1122 166679 0.67 167801 86 1156 164387 0.70 165543 87 1150 159380 0.72 160530 88 1083 159343 0.68 160426 89 1075 155740 0.69 156815 90 1179 155026 0.75 156205 91 1089 153383 0.70 154472 92 1077 157433 0.68 158510 93 1070 151456 0.70 152526 94 1060 145850 0.72 146910 95 1074 143919 0.74 144993 96 1012 142284 0.71 143296 97 1100 142701 0.76 143801 98 791 134580 0.58 135371 99 621 0 100.00 621