/gscratch/scrubbed/samwhite/data/P_generosa/BSeq/rrbs/pgen_bsseq_all_R1.fastq.gz and /gscratch/scrubbed/samwhite/data/P_generosa/BSeq/rrbs/pgen_bsseq_all_R2.fastq.gz
Data processed at 07:32 on 2019-02-24
Alignment
Sequence pairs analysed in total
10000000
Paired-end alignments with a unique best hit
4816532
Pairs without alignments under any condition
4015325
Pairs that did not map uniquely
1168143
Genomic sequence context not extractable (edges of chromosomes)
2637
Cytosine Methylation
Total C's analysed
153838993
Methylated C's in CpG context
5031567
Methylated C's in CHG context
687434
Methylated C's in CHH context
1217683
Methylated C's in Unknown context
20671
Unmethylated C's in CpG context
16770752
Unmethylated C's in CHG context
31621757
Unmethylated C's in CHH context
98509800
Unmethylated C's in Unknown context
299443
Percentage methylation (CpG context)
23.1%
Percentage methylation (CHG context)
2.1%
Percentage methylation (CHH context)
1.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2434927
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
2378968
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions