pgen_bsseq_all_R1_bismark_bt2_pe.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 48148 lines in total Total number of methylation call strings processed: 96296 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1143995 Total methylated C's in CpG context: 37824 Total methylated C's in CHG context: 5218 Total methylated C's in CHH context: 9012 Total C to T conversions in CpG context: 124102 Total C to T conversions in CHG context: 231972 Total C to T conversions in CHH context: 735867 C methylated in CpG context: 23.4% C methylated in CHG context: 2.2% C methylated in CHH context: 1.2%