/gscratch/scrubbed/samwhite/data/P_generosa/BSeq/rrbs/pgen_bsseq_all_R1.fastq.gz and /gscratch/scrubbed/samwhite/data/P_generosa/BSeq/rrbs/pgen_bsseq_all_R2.fastq.gz
Data processed at 01:16 on 2019-02-24
Alignment
Sequence pairs analysed in total
5000000
Paired-end alignments with a unique best hit
2632780
Pairs without alignments under any condition
1714350
Pairs that did not map uniquely
652870
Genomic sequence context not extractable (edges of chromosomes)
1890
Cytosine Methylation
Total C's analysed
84681578
Methylated C's in CpG context
2676214
Methylated C's in CHG context
377659
Methylated C's in CHH context
658231
Methylated C's in Unknown context
11254
Unmethylated C's in CpG context
9287626
Unmethylated C's in CHG context
17560746
Unmethylated C's in CHH context
54121102
Unmethylated C's in Unknown context
176865
Percentage methylation (CpG context)
22.4%
Percentage methylation (CHG context)
2.1%
Percentage methylation (CHH context)
1.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
1327184
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
1303706
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions