/gscratch/scrubbed/samwhite/data/P_generosa/BSeq/rrbs/pgen_bsseq_all_R1.fastq.gz and /gscratch/scrubbed/samwhite/data/P_generosa/BSeq/rrbs/pgen_bsseq_all_R2.fastq.gz
Data processed at 23:24 on 2019-02-23
Alignment
Sequence pairs analysed in total
500000
Paired-end alignments with a unique best hit
262611
Pairs without alignments under any condition
172520
Pairs that did not map uniquely
64869
Genomic sequence context not extractable (edges of chromosomes)
190
Cytosine Methylation
Total C's analysed
8458958
Methylated C's in CpG context
267170
Methylated C's in CHG context
37350
Methylated C's in CHH context
66707
Methylated C's in Unknown context
1221
Unmethylated C's in CpG context
928962
Unmethylated C's in CHG context
1754357
Unmethylated C's in CHH context
5404412
Unmethylated C's in Unknown context
17661
Percentage methylation (CpG context)
22.3%
Percentage methylation (CHG context)
2.1%
Percentage methylation (CHH context)
1.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
132540
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
129881
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions