/gscratch/scrubbed/samwhite/data/P_generosa/BSeq/rrbs/pgen_bsseq_all_R1.fastq.gz and /gscratch/scrubbed/samwhite/data/P_generosa/BSeq/rrbs/pgen_bsseq_all_R2.fastq.gz
Data processed at 23:17 on 2019-02-23
Alignment
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
52744
Pairs without alignments under any condition
34297
Pairs that did not map uniquely
12959
Genomic sequence context not extractable (edges of chromosomes)
50
Cytosine Methylation
Total C's analysed
1694841
Methylated C's in CpG context
52999
Methylated C's in CHG context
7471
Methylated C's in CHH context
13214
Methylated C's in Unknown context
238
Unmethylated C's in CpG context
185806
Unmethylated C's in CHG context
350443
Unmethylated C's in CHH context
1084908
Unmethylated C's in Unknown context
3497
Percentage methylation (CpG context)
22.2%
Percentage methylation (CHG context)
2.1%
Percentage methylation (CHH context)
1.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
26574
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
26120
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions