/gscratch/scrubbed/samwhite/data/P_generosa/BSeq/rrbs/pgen_bsseq_all_R1.fastq.gz and /gscratch/scrubbed/samwhite/data/P_generosa/BSeq/rrbs/pgen_bsseq_all_R2.fastq.gz
Data processed at 19:35 on 2019-02-23
Alignment
Sequence pairs analysed in total
2000000
Paired-end alignments with a unique best hit
1111553
Pairs without alignments under any condition
554369
Pairs that did not map uniquely
334078
Genomic sequence context not extractable (edges of chromosomes)
1354
Cytosine Methylation
Total C's analysed
35965412
Methylated C's in CpG context
1100315
Methylated C's in CHG context
157774
Methylated C's in CHH context
281693
Methylated C's in Unknown context
4909
Unmethylated C's in CpG context
4143359
Unmethylated C's in CHG context
7526175
Unmethylated C's in CHH context
22756096
Unmethylated C's in Unknown context
69049
Percentage methylation (CpG context)
21.0%
Percentage methylation (CHG context)
2.1%
Percentage methylation (CHH context)
1.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
553034
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
557165
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions