/gscratch/scrubbed/samwhite/data/P_generosa/BSeq/rrbs/pgen_bsseq_all_R1.fastq.gz and /gscratch/scrubbed/samwhite/data/P_generosa/BSeq/rrbs/pgen_bsseq_all_R2.fastq.gz
Data processed at 18:41 on 2019-02-23
Alignment
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
55798
Pairs without alignments under any condition
27532
Pairs that did not map uniquely
16670
Genomic sequence context not extractable (edges of chromosomes)
89
Cytosine Methylation
Total C's analysed
1803055
Methylated C's in CpG context
54428
Methylated C's in CHG context
7752
Methylated C's in CHH context
13821
Methylated C's in Unknown context
292
Unmethylated C's in CpG context
207701
Unmethylated C's in CHG context
377061
Unmethylated C's in CHH context
1142292
Unmethylated C's in Unknown context
3516
Percentage methylation (CpG context)
20.8%
Percentage methylation (CHG context)
2.0%
Percentage methylation (CHH context)
1.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
27617
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
28092
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions