/gscratch/scrubbed/samwhite/data/C_gigas/BSseq/cgig_bsseq_pe_all_R1.fastq.gz and /gscratch/scrubbed/samwhite/data/C_gigas/BSseq/cgig_bsseq_pe_all_R2.fastq.gz
Data processed at 16:13 on 2019-02-23
Alignment
Sequence pairs analysed in total
2000000
Paired-end alignments with a unique best hit
487600
Pairs without alignments under any condition
1365034
Pairs that did not map uniquely
147366
Genomic sequence context not extractable (edges of chromosomes)
19
Cytosine Methylation
Total C's analysed
6366907
Methylated C's in CpG context
91154
Methylated C's in CHG context
3123
Methylated C's in CHH context
11232
Methylated C's in Unknown context
1069
Unmethylated C's in CpG context
661830
Unmethylated C's in CHG context
1036674
Unmethylated C's in CHH context
4562894
Unmethylated C's in Unknown context
10512
Percentage methylation (CpG context)
12.1%
Percentage methylation (CHG context)
0.3%
Percentage methylation (CHH context)
0.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
247986
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
239595
original bottom strand
Deduplication
Alignments analysed
975162
Unique alignments
921561
Duplicates removed
53601
Duplicated alignments were found at 27230 different positions