/gscratch/scrubbed/samwhite/data/C_gigas/BSseq/cgig_bsseq_pe_all_R1.fastq.gz and /gscratch/scrubbed/samwhite/data/C_gigas/BSseq/cgig_bsseq_pe_all_R2.fastq.gz
Data processed at 16:04 on 2019-02-23
Alignment
Sequence pairs analysed in total
1000000
Paired-end alignments with a unique best hit
205611
Pairs without alignments under any condition
723281
Pairs that did not map uniquely
71108
Genomic sequence context not extractable (edges of chromosomes)
7
Cytosine Methylation
Total C's analysed
2171789
Methylated C's in CpG context
30587
Methylated C's in CHG context
485
Methylated C's in CHH context
1755
Methylated C's in Unknown context
24
Unmethylated C's in CpG context
231007
Unmethylated C's in CHG context
358457
Unmethylated C's in CHH context
1549498
Unmethylated C's in Unknown context
2319
Percentage methylation (CpG context)
11.7%
Percentage methylation (CHG context)
0.1%
Percentage methylation (CHH context)
0.1%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
104451
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
101153
original bottom strand
Deduplication
Alignments analysed
411208
Unique alignments
394661
Duplicates removed
16547
Duplicated alignments were found at 10035 different positions