Warning: Block unknown_A is not significant enough, removed from profile. Warning: Block unknown_C is not significant enough, removed from profile. Warning: Block unknown_K is not significant enough, removed from profile. Warning: Block unknown_L is not significant enough, removed from profile. Warning: Block unknown_A is not significant enough, removed from profile. Warning: Block unknown_B is not significant enough, removed from profile. Warning: Block unknown_C is not significant enough, removed from profile. Warning: Block unknown_D is not significant enough, removed from profile. Warning: Block unknown_E is not significant enough, removed from profile. Warning: Block unknown_O is not significant enough, removed from profile. Warning: Block unknown_Q is not significant enough, removed from profile. Warning: Block unknown_Q is not significant enough, removed from profile. Warning: Block unknown_T is not significant enough, removed from profile. Warning: Block unknown_A is not significant enough, removed from profile. Warning: Block unknown_B is not significant enough, removed from profile. Warning: Block unknown_V is not significant enough, removed from profile. Warning: Block unknown_W is not significant enough, removed from profile. Warning: Block unknown_E is not significant enough, removed from profile. Warning: Block unknown_U is not significant enough, removed from profile. Warning: Block unknown_I is not significant enough, removed from profile. Warning: Block unknown_W is not significant enough, removed from profile. Warning: Block unknown_Y is not significant enough, removed from profile. Warning: Block unknown_Q is not significant enough, removed from profile. Warning: Block unknown_AE is not significant enough, removed from profile. Warning: Block unknown_S is not significant enough, removed from profile. Warning: Block unknown_H is not significant enough, removed from profile. Warning: Block unknown_I is not significant enough, removed from profile. Warning: Block unknown_J is not significant enough, removed from profile. Warning: Block unknown_B is not significant enough, removed from profile. Warning: Block unknown_B is not significant enough, removed from profile. Warning: Block unknown_C is not significant enough, removed from profile. Warning: Block unknown_B is not significant enough, removed from profile. Warning: Block unknown_C is not significant enough, removed from profile. Warning: Block unknown_I is not significant enough, removed from profile. Warning: Block unknown_E is not significant enough, removed from profile. Warning: Block unknown_H is not significant enough, removed from profile. Warning: Block unknown_L is not significant enough, removed from profile. Warning: Block unknown_M is not significant enough, removed from profile. examining piece 201..6842 (6642 bp) Warning: Block unknown_A is not significant enough, removed from profile. Warning: Block unknown_E is not significant enough, removed from profile. Warning: Block unknown_F is not significant enough, removed from profile. Warning: Block unknown_I is not significant enough, removed from profile. Warning: Block unknown_B is not significant enough, removed from profile. Warning: Block unknown_H is not significant enough, removed from profile. Warning: Block unknown_I is not significant enough, removed from profile. Warning: Block unknown_J is not significant enough, removed from profile. Warning: Block unknown_K is not significant enough, removed from profile. Warning: Block unknown_N is not significant enough, removed from profile. examining piece 1..4512 (4512 bp) examining piece 1..8072 (8072 bp) viterbi algorithm progress: [%]: Warning: Block unknown_AWarning: Block is not significant enough, removed from profile. unknown_T is not significant enough, removed from profile. .examining piece 1..6852 (6852 bp) Warning: Block unknown_AA is not significant enough, removed from profile. viterbi algorithm progress: [%]: viterbi algorithm progress: [%]: ..Warning: Block unknown_H is not significant enough, removed from profile. viterbi algorithm progress: [%]: .Warning: Block unknown_M is not significant enough, removed from profile. examining piece 1..6646 (6646 bp) examining piece 1..8818 (8818 bp) examining piece 1..3883 (3883 bp) examining piece 1..6072 (6072 bp) viterbi algorithm progress: [%]: viterbi algorithm progress: [%]: ...Warning: Block unknown_A is not significant enough, removed from profile. viterbi algorithm progress: [%]: viterbi algorithm progress: [%]: Warning: Block unknown_D is not significant enough, removed from profile. ...examining piece 1..9697 (9697 bp) .examining piece 1..4093 (4093 bp) examining piece 1..6137 (6137 bp) examining piece 1..2103 (2103 bp) viterbi algorithm progress: [%]: .viterbi algorithm progress: [%]: ...examining piece 1..6139. (6139 bp) viterbi algorithm progress: [%]: ..Warning: Block unknown_H is not significant enough, removed from profile. .Warning: Block unknown_N is not significant enough, removed from profile. Warning: Block unknown_O is not significant enough, removed from profile. examining piece 1..5393 (5393 bp) ..Warning: Block unknown_F is not significant enough, removed from profile. viterbi algorithm progress: [%]: ..examining piece 1..6736 (6736 bp) ..viterbi algorithm progress: [%]: ...examining piece 1..12283 (.12283 bp) viterbi algorithm progress: [%]: ..Warning: Block unknown_D is not significant enough, removed from profile. .....Warning: Block unknown_H is not significant enough, removed from profile. Warning: Block unknown_I is not significant enough, removed from profile. ..examining piece 1..5413 (5413 bp) ......viterbi algorithm progress: [%]: ......Warning: Block ..10viterbi algorithm progress: [%]: viterbi algorithm progress: [%]: ....Warning: Block unknown_G is not significant enough, removed from profile. ..Warning: Block unknown_A is not significant enough, removed from profile. ..Warning: Block unknown_Dunknown_C is not significant enough, removed from profile. is not significant enough, removed from profile. ...Warning: Block unknown_J is not significant enough, removed from profile. .Warning: Block unknown_P is not significant enough, removed from profile. Warning: Block unknown_R is not significant enough, removed from profile. Warning: Block unknown_A is not significant enough, removed from profile. Warning: Block unknown_S is not significant enough, removed from profile. Warning: Block unknown_T is not significant enough, removed from profile. ....Warning: Block unknown_C. is not significant enough, removed from profile. Warning: Block unknown_D is not significant enough, removed from profile. 10.....examining piece 1..6083 (6083 bp) examining piece 1..5312 (5312 bp) ..examining piece 1..5380 (5380 bp) ....viterbi algorithm progress: [%]: 10...Warning: Block unknown_B is not significant enough, removed from profile. .Warning: Block unknown_X is not significant enough, removed from profile. Warning: Block unknown_Y is not significant enough, removed from profile. viterbi algorithm progress: [%]: .Warning: Block unknown_AA is not significant enough, removed from profile. Warning: Block unknown_A is not significant enough, removed from profile. .Warning: Block unknown_E is not significant enough, removed from profile. ...Warning: Block ..Warning: Block Warning: Block unknown_N is not significant enough, removed from profile. Warning: Block unknown_A is not significant enough, removed from profile. Warning: Block unknown_O is not significant enough, removed from profile. viterbi algorithm progress: [%]: Warning: Block unknown_P is not significant enough, removed from profile. ..Warning: Block unknown_Q is not significant enough, removed from profile. .Warning: Block unknown_R is not significant enough, removed from profile. ..Warning: Block unknown_D10 is not significant enough, removed from profile. .unknown_Funknown_L.Warning: Block is not significant enough, removed from profile. 10 is not significant enough, removed from profile. ...unknown_E is not significant enough, removed from profile. ...Warning: Block unknown_D is not significant enough, removed from profile. .Warning: Block unknown_AC is not significant enough, removed from profile. ..examining piece 2440..15213 (12774 bp) ...10..10Warning: Block unknown_A is not significant enough, removed from profile. ...viterbi algorithm progress: [%]: Warning: Block unknown_F is not significant enough, removed from profile. ..Warning: Block unknown_V is not significant enough, removed from profile. Warning: Block unknown_H is not significant enough, removed from profile. examining piece 156..6269 (6114 bp) ...Warning: Block unknown_A is not significant enough, removed from profile. ..10viterbi algorithm progress: [%]: ...Warning: Block unknown_L is not significant enough, removed from profile. ...Warning: Block unknown_O is not significant enough, removed from profile. 10......10.........10examining piece 1..2956 (2956 bp) ..viterbi algorithm progress: [%]: .......examining piece 1509..9758 (8250 bp) ..............10...20.............20....examining piece 1..1438 (1438 bp) examining piece 393..13108 (12716 bp) ..viterbi algorithm progress: [%]: .........................viterbi algorithm progress: [%]: .Warning: Block unknown_P is not significant enough, removed from profile. ..viterbi algorithm progress: [%]: .......2020.30.20Warning: Block unknown_B is not significant enough, removed from profile. .Warning: Block unknown_H is not significant enough, removed from profile. 10........10Warning: Block unknown_L is not significant enough, removed from profile. Warning: Block unknown_M is not significant enough, removed from profile. ..Warning: Block unknown_K is not significant enough, removed from profile. Warning: Block unknown_B is not significant enough, removed from profile. .....Warning: Block unknown_L is not significant enough, removed from profile. Warning: Block unknown_M is not significant enough, removed from profile. ..Warning: Block unknown_F is not significant enough, removed from profile. ...........................10......4020.................20...20.....10.................10.10.............30.30.20..........50..Warning: Block unknown_C is not significant enough, removed from profile. ..Warning: Block unknown_E is not significant enough, removed from profile. .Warning: Block unknown_F is not significant enough, removed from profile. Warning: Block unknown_G is not significant enough, removed from profile. ...20.........Warning: Block unknown_Q is not significant enough, removed from profile. .............30...............20.................3030..60...................20.......................10.........20..30........examining piece 1..11387 (11387 bp) .107020..40.20.....30.............20.....30..........viterbi algorithm progress: [%]: ...........3040......20...............40...................80...10..40.......................40............10...............505030..20..2030..40....30................................50....................40...40..examining piece 1942..10613 (8672 bp) ...............40...................30...50.examining piece 1..3292 (3292 bp) .viterbi algorithm progress: [%]: ...20examining piece 1..6778 (6778 bp) .50.examining piece 1..6001 (6001 bp) ...viterbi algorithm progress: [%]: ......viterbi algorithm progress: [%]: .5060examining piece 1examining piece ....1..30.examining piece 1..16506 (16506 bp) .examining piece 1..2752 (2752 bp) .examining piece 1..4557 (4557 bp) 10.viterbi algorithm progress: [%]: .......examining piece 1..2185 (2185 bp) .examining piece 1..9298 (9298 bp) .viterbi algorithm progress: [%]: ..examining piece 1..3013 (3013 bp) 40..viterbi algorithm progress: [%]: ...examining piece viterbi algorithm progress: [%]: 1examining piece ..1..30..viterbi algorithm progress: [%]: ....examining piece ....examining piece 60608413....viterbi algorithm progress: [%]: ...examining piece 1..5626 (5626 bp) ..examining piece 1..6873 (6873 bp) examining piece 1..2983 (2983 bp) ..viterbi algorithm progress: [%]: .viterbi algorithm progress: [%]: .6134.40...... (5338examining piece .examining piece 90.examining piece examining piece (20....examining piece .3655..10751 (7097 bp) examining piece 1..5442 (5442 bp) ......7040..1..7139 (7139 bp) ....10viterbi algorithm progress: [%]: 5338 bp) examining piece 452..6782 (6331 bp) ...7437 (7437 bp) ..1224..8413examining piece (......1.18280 (18057 bp) .viterbi algorithm progress: [%]: examining piece examining piece .viterbi algorithm progress: [%]: viterbi algorithm progress: [%]: 30.. bp)1 ..9367 (9367 bp) ...6134 bp) ....viterbi algorithm progress: [%]: 4768...50...viterbi algorithm progress: [%]: ..........viterbi algorithm progress: [%]: (4154viterbi algorithm progress: [%]: .viterbi algorithm progress: [%]: viterbi algorithm progress: [%]: ..1....4768.....viterbi algorithm progress: [%]: 8124.....1viterbi algorithm progress: [%]: ...... bp)...... (......1...........4154....3222 bp)....30....30. (........3222... .. ....3055 (26927... bp).................20.......... (viterbi algorithm progress: [%]: ...3055.........viterbi algorithm progress: [%]: ..6050.... ........viterbi algorithm progress: [%]: ..........50.......10........................10............... bp)10060...18804..6359........30......10.60..80.... (. .. ..6359.......... bp)...viterbi algorithm progress: [%]: ...... bp)................70.. ... 50....1060..........50........10......viterbi algorithm progress: [%]: ....50...........40............10viterbi algorithm progress: [%]: 10.....9040........10...................20.1040..........70.......10.....10....10......10.........10..10...10..........10................10.60..............10.Warning: Block .........................10.....20......................unknown_A..........20......20.1040......100........30...........10 is not significant enough, removed from profile. ...... .10......70...30.........20.......................20.......10.............60...........1070.10.......10....2080..............examining piece 1..9642 (9642 bp) ......6040.........10.......50...60..10....viterbi algorithm progress: [%]: ...........2010..30......30.............................20....60..................80....40..............Warning: Block .......20....20....70......................70........20..................20.90.......80........20.........5030...20..unknown_H...................70................20...90............30............40............20...30..50..3030..................50..........30......100..20...80...... is not significant enough, removed from profile. .Warning: Block unknown_J is not significant enough, removed from profile. .Warning: Block unknown_N is not significant enough, removed from profile. ...70.......20...20..20..............20....3070.............30.....60.................................40....20.......................20....70......examining piece 15290..25454 (10165 bp) 2030......viterbi algorithm progress: [%]: ............30..10....30..9020....70............60.......3040..............40......60....30.........20.................20...............50......30....................100................60.....40......20... 80..............50.....3090.........50....10..40.....30........305030....20......2080............40.408040...4030............Warning: Block unknown_L is not significant enough, removed from profile. ..Warning: Block unknown_O is not significant enough, removed from profile. .........40...100.30..........80......................70..40.. ...............................8050.....................70...............70.......10......30.........50......30.....30....................examining piece .........60.................80....................40..............30...50..70....1..5274 (5274 bp) ..50Warning: Block unknown_B is not significant enough, removed from profile. ...examining piece 1..2762 (2762 bp) ..viterbi algorithm progress: [%]: .........40..........30.......viterbi algorithm progress: [%]: ....40....30.......90..........80......40..50..1090.40.....100.......................40.40..........90.....50......40..40............examining piece 1..4334 (4334 bp) ..5050.viterbi algorithm progress: [%]: ....4010..........6060.........80.60...40............... .............70.60..............40...................70......80...................40..................................................80.........................80..........40...........60.6070....90...5020...........50......50...40...........90..............50.........50...50.20.....10...80.60......90...30.40.....100...20.....5020..2030......50......40..........100..............60..60....100........examining piece 1.......10...60...90...70.......... ....50.......80.......................... ..... ....4487.....50....40..............30................................50.................50......20....50..60. (..........60...........4487.....4070......20...80.......60......60....90 bp) ..........viterbi algorithm progress: [%]: ....50.........90......90.60..90.............Warning: Block 60.....6030..90..70............................10060..60..........100.....80.Warning: Block ........100.... ...........unknown_B..70.......... is not significant enough, removed from profile. ........... .....30..50.50...examining piece 1..4876 (4876 bp) ...viterbi algorithm progress: [%]: .....unknown_H....Warning: Block 30.........40...30.....50..............unknown_D is not significant enough, removed from profile. .Warning: Block unknown_F is not significant enough, removed from profile. .70.Warning: Block unknown_K is not significant enough, removed from profile. .Warning: Block unknown_M is not significant enough, removed from profile. .. is not significant enough, removed from profile. 90.....Warning: Block unknown_P is not significant enough, removed from profile. ...100.Warning: Block unknown_S is not significant enough, removed from profile. ......60..70.......90..... ..70......60................30.70.....100.100......50.50. 100........examining piece 2088..7275 (5188 bp) ..examining piece 1..3133 (3133 bp) viterbi algorithm progress: [%]: ................viterbi algorithm progress: [%]: ........70....40.......... ....40.........80..examining piece 1..9779 (9779 bp) ...6070...............10.........60.70....viterbi algorithm progress: [%]: ................... ...80..60................70.......80...100....10................................80...40.90...............................100..60.............30.....70.20.....10........70.80.90.............5060....70................90Warning: Block unknown_C is not significant enough, removed from profile. Warning: Block unknown_E is not significant enough, removed from profile. .........50.7080 .........Warning: Block unknown_F is not significant enough, removed from profile. ..........Warning: Block unknown_B is not significant enough, removed from profile. ..Warning: Block unknown_C is not significant enough, removed from profile. Warning: Block unknown_H is not significant enough, removed from profile. .examining piece 1..6446 (Warning: Block 6446........100...80.100.40.... .......... bp) .....viterbi algorithm progress: [%]: ...90..... .......examining piece 1..8411 (8411 bp) .70..examining piece 1..15447 (15447 bp) .90......70...20...10...examining piece 1..9822 (9822 bp) ..70....20......40...50..viterbi algorithm progress: [%]: ......viterbi algorithm progress: [%]: ...40.100...80.........80.80.unknown_I......50viterbi algorithm progress: [%]: .100...... 90........Warning: Block unknown_C is not significant enough, removed from profile. ......60.........80......70...4030........ is not significant enough, removed from profile. ..Warning: Block unknown_P is not significant enough, removed from profile. Warning: Block unknown_Q is not significant enough, removed from profile. ..Warning: Block unknown_T is not significant enough, removed from profile. .Warning: Block unknown_V is not significant enough, removed from profile. ............................90...................30examining piece 1..3785 (3785 bp) .....viterbi algorithm progress: [%]: .......70.............80...60...100........................80........examining piece 1..11655 (11655 bp) ....examining piece 1..7697 (7697 bp) ...10.viterbi algorithm progress: [%]: ..viterbi algorithm progress: [%]: ..............90..30...80...80...70.90.100....... .....60.........20.........80...................60.....Warning: Block unknown_G is not significant enough, removed from profile. ...........70.........30..............100.......... ..........10.... .40..........10.......80.........90...60..........examining piece 1..5928 (5928 bp) .90...viterbi algorithm progress: [%]: .80....509070......9090..........10.......................30..............2080...20.100....10.20.....100.7040.7050.examining piece 1..2878 (2878 bp) viterbi algorithm progress: [%]: .......examining piece 601..9374 (9374 bp) .........viterbi algorithm progress: [%]: ........examining piece 1..7046 (7046 bp) 20... viterbi algorithm progress: [%]: .........10....60..............80..................60.20...Warning: Block unknown_E is not significant enough, removed from profile. Warning: Block unknown_H is not significant enough, removed from profile. .........Warning: Block unknown_U is not significant enough, removed from profile. . ..70.90.......examining piece 1..9259 (9259 bp) 9050...40....10....viterbi algorithm progress: [%]: .............................80.........Warning: Block unknown_A is not significant enough, removed from profile. ...10Warning: Block unknown_D is not significant enough, removed from profile. ....50...100............10........10.....90.......30....................................... ............100...............50...30...20..40..... 20..............70...........3010..........40....6080..100...........100....examining piece 1..17277 (17277 bp) ................30.viterbi algorithm progress: [%]: ........20.30.100..examining piece 1..2239 (2239 bp) ..viterbi algorithm progress: [%]: ...100..100..90...... .....20.....................60.....10Warning: Block unknown_D. is not significant enough, removed from profile. ...Warning: Block unknown_H is not significant enough, removed from profile. Warning: Block unknown_I is not significant enough, removed from profile. 50..4070 .........70.....40................... ..40......90................ ...Warning: Block unknown_D is not significant enough, removed from profile. .Warning: Block unknown_H is not significant enough, removed from profile. Warning: Block unknown_I is not significant enough, removed from profile. ....30..........10..........100...........80....5050.. .40.....10010.50..........30...30.......50...80.80...............505040...........50.............20....90..examining piece 1..5311 (5311 bp) ...60Warning: Block unknown_A is not significant enough, removed from profile. ..viterbi algorithm progress: [%]: ..Warning: Block unknown_C is not significant enough, removed from profile. Warning: Block unknown_D is not significant enough, removed from profile. ........Warning: Block unknown_N is not significant enough, removed from profile. .Warning: Block unknown_O is not significant enough, removed from profile. .Warning: Block unknown_P is not significant enough, removed from profile. Warning: Block unknown_Q is not significant enough, removed from profile. Warning: Block unknown_R is not significant enough, removed from profile. .60.......Warning: Block unknown_V is not significant enough, removed from profile. ......examining piece 1..12640 (12640 bp) 60......viterbi algorithm progress: [%]: .......70.............examining piece 1..5040 (5040 bp) ..90...viterbi algorithm progress: [%]: ..... ........90....... ..10......40...............30......examining piece 1..6977 (6977 bp) ..Warning: Block unknown_A is not significant enough, removed from profile. ..Warning: Block unknown_C is not significant enough, removed from profile. .Warning: Block unknown_D is not significant enough, removed from profile. viterbi algorithm progress: [%]: ......70....Warning: Block unknown_N is not significant enough, removed from profile. Warning: Block unknown_O is not significant enough, removed from profile. Warning: Block unknown_P is not significant enough, removed from profile. Warning: Block unknown_Q is not significant enough, removed from profile. Warning: Block unknown_R is not significant enough, removed from profile. .60.70..40Warning: Block unknown_V is not significant enough, removed from profile. ..................40................40...100.............50.......90..100.....20................70....80..100.80....50...70.............examining piece 8124..27471 (19348 bp) ....70 . ....50....8070..20........Warning: Block unknown_D is not significant enough, removed from profile. ...................viterbi algorithm progress: [%]: ........Warning: Block unknown_B is not significant enough, removed from profile. 60.80Warning: Block unknown_D is not significant enough, removed from profile. ..50..Warning: Block unknown_P is not significant enough, removed from profile. .........10......60........ 50......80..100..60......30....10examining piece 632..19979 (19348 bp) ...............20.....viterbi algorithm progress: [%]: ............60..90...........90..Warning: Block unknown_A is not significant enough, removed from profile. .Warning: Block unknown_C is not significant enough, removed from profile. examining piece 1..6324 (6324 bp) .Warning: Block unknown_J is not significant enough, removed from profile. ...50examining piece 1..8198 (8198 bp) ..80.....Warning: Block unknown_X is not significant enough, removed from profile. Warning: Block unknown_Y is not significant enough, removed from profile. Warning: Block unknown_AA is not significant enough, removed from profile. ..................80.viterbi algorithm progress: [%]: ....20.viterbi algorithm progress: [%]: ...................70.........60.60..Warning: Block unknown_A is not significant enough, removed from profile. .Warning: Block unknown_C is not significant enough, removed from profile. .Warning: Block unknown_J is not significant enough, removed from profile. examining piece 1..3710 (3710 bp) ...viterbi algorithm progress: [%]: ....... ....Warning: Block unknown_X is not significant enough, removed from profile. Warning: Block unknown_Y is not significant enough, removed from profile. Warning: Block unknown_AA is not significant enough, removed from profile. .90...20.......examining piece 1..4932 (4932 bp) ........60.100.......80..............20........7060......viterbi algorithm progress: [%]: ......................60.90...9020...examining piece ..40...........90...Warning: Block 80.10...100.....90............examining piece 1..2606 (2606 bp) .30.viterbi algorithm progress: [%]: ....30....... 10..1..3372 (3372 bp) 30...viterbi algorithm progress: [%]: 90....80..................100100................. ... ..................unknown_E is not significant enough, removed from profile. ..Warning: Block unknown_G is not significant enough, removed from profile. .100............................4010020109010................70... ....60.................. .20.........examining piece 1..2468 (2468 bp) .viterbi algorithm progress: [%]: .......70... ..100.30......30.90..................................40.......Warning: Block unknown_P is not significant enough, removed from profile. .Warning: Block unknown_S...30........100....10050.40....examining piece 1..4136 (4136 bp) ..100viterbi algorithm progress: [%]: .Warning: Block unknown_A is not significant enough, removed from profile. ..Warning: Block unknown_E is not significant enough, removed from profile. .......40....20..90..50......... Warning: Block .examining piece .1..Warning: Block ..unknown_Aunknown_A... is not significant enough, removed from profile. is not significant enough, removed from profile. 70................Warning: Block unknown_F is not significant enough, removed from profile. ..examining piece 1..2731 (2731 bp) Warning: Block unknown_N is not significant enough, removed from profile. Warning: Block unknown_O is not significant enough, removed from profile. . .... .. is not significant enough, removed from profile. viterbi algorithm progress: [%]: ...7070............examining piece 1..6895 (6895 bp) .......Warning: Block unknown_Q is not significant enough, removed from profile. .viterbi algorithm progress: [%]: ...20........70......50................105494 (5494 bp) .................90.80.60...10060......100........examining piece 1..11693 (11693 bp) 30.... ...viterbi algorithm progress: [%]: ...10....... ... ........40....70..Warning: Block unknown_J is not significant enough, removed from profile. viterbi algorithm progress: [%]: .....Warning: Block unknown_O is not significant enough, removed from profile. .....Warning: Block unknown_A is not significant enough, removed from profile. Warning: Block unknown_B is not significant enough, removed from profile. ...40......examining piece 1..6994 (6994 bp) ........viterbi algorithm progress: [%]: .....8070.....Warning: Block unknown_A is not significant enough, removed from profile. .Warning: Block unknown_C is not significant enough, removed from profile. Warning: Block unknown_D is not significant enough, removed from profile. Warning: Block unknown_F is not significant enough, removed from profile. 30..10..10............examining piece 1..4221 (4221 bp) .....viterbi algorithm progress: [%]: ..70.Warning: Block unknown_F is not significant enough, removed from profile. ..examining piece 1..4915 (4915 bp) ..70..viterbi algorithm progress: [%]: .......10010....60.80....80......90................examining piece ....60833....9182 (....8350...examining piece 537..12817 (12281 bp)1020..10.......examining piece 1..6349 (6349 bp) .....100..........viterbi algorithm progress: [%]: .. bp).50..20........20.....80. .......80........ ................10.201030........30Warning: Block unknown_D is not significant enough, removed from profile. .........50.....viterbi algorithm progress: [%]: ................ ..90........... ............40....40......................10.30....10..50...60..20.....20.......examining piece 1..8105 (8105 bp) 80.......80.viterbi algorithm progress: [%]: ....Warning: Block .unknown_E10.................80.....30...examining piece 1..3981 (3981 bp) ..viterbi algorithm progress: [%]: ..90..............40.....60..60......80.......................viterbi algorithm progress: [%]: .....10.40...Warning: Block ..... is not significant enough, removed from profile. ...........80.......20...............70............unknown_L is not significant enough, removed from profile. Warning: Block unknown_M is not significant enough, removed from profile. 10........20.80.................30.....70...examining piece .......10040.examining piece 1..3184 (3184 bp) .viterbi algorithm progress: [%]: ..50..........30.1..............100........90.....50.....examining piece 4817..10098 (5282 bp) .........examining piece 1..8550 (8550 bp) ........10......... ..viterbi algorithm progress: [%]: ...20.............90....80..10......30. .....10..........viterbi algorithm progress: [%]: ...10.90.......3493 (3493 bp) ..viterbi algorithm progress: [%]: .......30..90.....................100...70........20.............50.............10.... 3090.......90............203090...................9080.20.......20.............40..30.......10...60.......20............................9040......100...........40................. .......20..50.40..10....100.10...90....................examining piece 1..5749 (5749 bp) 50..viterbi algorithm progress: [%]: ..20...4030......................70..Warning: Block unknown_D is not significant enough, removed from profile. .Warning: Block unknown_K is not significant enough, removed from profile. .Warning: Block unknown_M is not significant enough, removed from profile. .10...Warning: Block unknown_U is not significant enough, removed from profile. ..30....................90..........60.....40..............................100.....2010............80..40.........30.....30...........100.. 50..Warning: Block unknown_D is not significant enough, removed from profile. Warning: Block unknown_E is not significant enough, removed from profile. ...20......60........20.....70.......50...................100........... ............80...100.30..40...70...............................50......50.....20......40...40.3060...40 ..20.......100.1005060............ .10........examining piece 1..11928 (11928 bp) .......viterbi algorithm progress: [%]: ...examining piece .1......70...40.....40..50..50...... .........20........4184 (4184 bp) .....viterbi algorithm progress: [%]: ........examining piece 1..6262 (6262 bp) ....viterbi algorithm progress: [%]: .............60.........70......100...90......100.examining piece 70.50730..17815 (17086 bp) .........30.....viterbi algorithm progress: [%]: .20.....40................50...................... 30....... 50....................... 8050.......30 .........10.Warning: Block unknown_J is not significant enough, removed from profile. .60.30Warning: Block unknown_N is not significant enough, removed from profile. ...60....20..30..........60.Warning: Block unknown_W is not significant enough, removed from profile. 8050...................70.80......................................Warning: Block Warning: Block unknown_A is not significant enough, removed from profile. unknown_J is not significant enough, removed from profile. Warning: Block unknown_B is not significant enough, removed from profile. Warning: Block unknown_C is not significant enough, removed from profile. Warning: Block unknown_N is not significant enough, removed from profile. Warning: Block ...50..Warning: Block unknown_W is not significant enough, removed from profile. .100.........90.......100.examining piece 570..9941 (9372 bp) .....examining piece 1..5716 (5716 bp) ...viterbi algorithm progress: [%]: .viterbi algorithm progress: [%]: 80............40...............5020......8060.....60...10........unknown_G is not significant enough, removed from profile. .40Warning: Block unknown_H is not significant enough, removed from profile. Warning: Block unknown_I is not significant enough, removed from profile. ...Warning: Block 60..Warning: Block unknown_Q is not significant enough, removed from profile. ...90...........unknown_L is not significant enough, removed from profile. 10.......50.................... ....40.......................60.......... ...90.90..30....90....60.............1030.............50..Warning: Block unknown_K is not significant enough, removed from profile. ....70.............90.....90.examining piece 10262..37256 (26995 bp) .................70.6030...viterbi algorithm progress: [%]: ........3030.examining piece 1..12060 (12060 bp) ....7040...viterbi algorithm progress: [%]: ........examining piece 1..2950 (2950 bp) .viterbi algorithm progress: [%]: ......examining piece 1..8900 (8900 bp) ..60..viterbi algorithm progress: [%]: ..................100............100.............70.80.................................10..............................100.....100.....20......60....40100. ....................60...........9010....10.70.30...40...60.....30..20.........60.......................Warning: Block unknown_G is not significant enough, removed from profile. ..Warning: Block unknown_M is not significant enough, removed from profile. ....50...... ........50............70. . .40...20..70.....40.70...Warning: Block unknown_K is not significant enough, removed from profile. 60 ...100........70...........50..80.. ..........100................80.70..Warning: Block unknown_D is not significant enough, removed from profile. ...20.....80...examining piece 1..8079 (8079 bp) .50........viterbi algorithm progress: [%]: ................................. ...............50......50...20.30.80............20examining piece 1..3183 (3183 bp) 20...examining piece 1..3957 (3957 bp) viterbi algorithm progress: [%]: examining piece 1..14127 (14127 bp) .60viterbi algorithm progress: [%]: .....viterbi algorithm progress: [%]: .30...70.90...........80.80..........80....Warning: Block unknown_L is not significant enough, removed from profile. ....examining piece Warning: Block unknown_S is not significant enough, removed from profile. .....70.........60701..9984 (9984 bp) ........60........50..............Warning: Block unknown_F is not significant enough, removed from profile. ...30.....50.....70.........10................90...Warning: Block unknown_C is not significant enough, removed from profile. .Warning: Block unknown_L is not significant enough, removed from profile. ..60.........10....examining piece .1..7390 (7390examining piece ..100.........Warning: Block unknown_C is not significant enough, removed from profile. .......40.3988..14113 (10126 bp) examining piece ...80........ ..90....60..examining piece 1..3097 (3097 bp) ..60.90 bp) .....viterbi algorithm progress: [%]: ..viterbi algorithm progress: [%]: ...........viterbi algorithm progress: [%]: 40...20.............701..5711 (5711 bp) ..viterbi algorithm progress: [%]: .viterbi algorithm progress: [%]: ....7070........40.80........examining piece ..............60.213.....................80...........100.......................80......11598 (11386 bp) .......viterbi algorithm progress: [%]: ....40.....examining piece ...100..... .....examining piece .1..6428 (6428 bp) .....viterbi algorithm progress: [%]: .....10100.....3101..10167 (7067 bp) .viterbi algorithm progress: [%]: ...80.70....60.40...... .........10 8010100.......90.20...70...........10...70..30..........30......10....................10..........Warning: Block unknown_A is not significant enough, removed from profile. .. .......10...70................................................50.....40..........30..............20............20.....10.........60.100.Warning: Block ..10..9090.....90Warning: Block 90unknown_F...80examining piece .......... .............unknown_F.201.9080 is not significant enough, removed from profile. 40............7011 (7011 bp) ..80.........viterbi algorithm progress: [%]: .........40.20.80..........6070..80.... is not significant enough, removed from profile. .............50.....50....examining piece 1..8745 (8745 bp) ....90.viterbi algorithm progress: [%]: ..........80.100....30........100.70......50........90... ......................10.....................60...................20...90... ......Warning: Block unknown_H is not significant enough, removed from profile. ........Warning: Block unknown_P is not significant enough, removed from profile. .....Warning: Block unknown_T is not significant enough, removed from profile. ......40.............20...1040.......30100......Warning: Block unknown_W is not significant enough, removed from profile. ...examining piece 201030Warning: Block unknown_X is not significant enough, removed from profile. ...100 10..Warning: Block unknown_AI is not significant enough, removed from profile. ...70....40..........Warning: Block unknown_B is not significant enough, removed from profile. .Warning: Block unknown_D is not significant enough, removed from profile. Warning: Block unknown_F is not significant enough, removed from profile. Warning: Block unknown_G is not significant enough, removed from profile. Warning: Block unknown_H is not significant enough, removed from profile. Warning: Block unknown_J is not significant enough, removed from profile. Warning: Block unknown_K is not significant enough, removed from profile. Warning: Block unknown_L is not significant enough, removed from profile. 1.20...6973 (6973 bp) 30..40.. .20viterbi algorithm progress: [%]: .......Warning: Block unknown_R is not significant enough, removed from profile. .Warning: Block unknown_V is not significant enough, removed from profile. ....Warning: Block ..........30................90.30.examining piece 1..3951...40.....90.....100...90..........Warning: Block ...unknown_AD is not significant enough, removed from profile. 7050...80.........................unknown_I is not significant enough, removed from profile. Warning: Block unknown_J is not significant enough, removed from profile. ....10.... (3951 bp) ......10viterbi algorithm progress: [%]: .........90...........................20........100......100.80.. ...5050....20....30.......... ...examining piece 1..10505 (10505 bp) ..20.. ..viterbi algorithm progress: [%]: ........Warning: Block unknown_B is not significant enough, removed from profile. .....Warning: Block unknown_Q is not significant enough, removed from profile. .Warning: Block unknown_S is not significant enough, removed from profile. ..Warning: Block unknown_Z is not significant enough, removed from profile. Warning: Block unknown_AA is not significant enough, removed from profile. Warning: Block unknown_AB is not significant enough, removed from profile. Warning: Block unknown_AC is not significant enough, removed from profile. .............................Warning: Block unknown_AJ is not significant enough, removed from profile. Warning: Block unknown_AK is not significant enough, removed from profile. .Warning: Block unknown_AM is not significant enough, removed from profile. Warning: Block unknown_AN is not significant enough, removed from profile. 100...50................7050....60Warning: Block unknown_J is not significant enough, removed from profile. Warning: Block unknown_P is not significant enough, removed from profile. ..Warning: Block unknown_U is not significant enough, removed from profile. .........60.50.Warning: Block .......30....... examining piece .101..14090 (13990 bp) .80..40viterbi algorithm progress: [%]: .....50.unknown_F90 is not significant enough, removed from profile. ..100...........examining piece 1..12884 (12884 bp) .....examining piece 1..4347 (4347 bp) viterbi algorithm progress: [%]: .viterbi algorithm progress: [%]: ..............6030..Warning: Block ..40unknown_H.... is not significant enough, removed from profile. ..100....................20...60....50............. . 7010...........Warning: Block unknown_A is not significant enough, removed from profile. 30Warning: Block unknown_C is not significant enough, removed from profile. ..........10.........................examining piece 1..2889 (2889 bp) .viterbi algorithm progress: [%]: ...............20.......30...30...Warning: Block unknown_B is not significant enough, removed from profile. 70..Warning: Block unknown_L is not significant enough, removed from profile. .Warning: Block unknown_B is not significant enough, removed from profile. .....Warning: Block unknown_L is not significant enough, removed from profile. .60.......................40....50.80..................10.......30..1090Warning: Block unknown_C is not significant enough, removed from profile. Warning: Block unknown_G is not significant enough, removed from profile. ....90....examining piece 1..4099 (4099 bp) ..viterbi algorithm progress: [%]: ...................30.20....40examining piece 1..3707 (3707 bp) .60...................6080...examining piece 1..5074 (5074 bp) ......20.viterbi algorithm progress: [%]: ............40..................examining piece 887..7532 (6646 bp) .40examining piece 1..5384 (5384 bp) .viterbi algorithm progress: [%]: .....7070..40.........80......40...................30Warning: Block .unknown_Aviterbi algorithm progress: [%]: 70...10 is not significant enough, removed from profile. .viterbi algorithm progress: [%]: ...Warning: Block unknown_L is not significant enough, removed from profile. ........100..............70...9020...50......60...............60.............50...................70..examining piece 1..7221 (7221 bp) ............100...100....50.........60......90..................................10.....80..60.. ........70.8060........100....10.50.........80..10.viterbi algorithm progress: [%]: ..........90.....2010.5030........10............30..60.... ......... .........70........................30.....40.100.........10.....100.....100..................20.70100...... 40...... .... ..... .60........40......... .........20.80...60........20......50.....30....8080.90.80.......80.........80.80...................Warning: Block unknown_A is not significant enough, removed from profile. ....80......50...70..............Warning: Block unknown_C is not significant enough, removed from profile. .......80...............9040....examining piece ...........20.90examining piece .1..1..2053 (2053 bp) 40.viterbi algorithm progress: [%]: ...20.....2020....examining piece 1..2511 (2511 bp) .viterbi algorithm progress: [%]: ...3681 (3681 bp) ..50.examining piece 1..3658 (3658 bp) viterbi algorithm progress: [%]: 40...examining piece 6254..16364 (10111 bp) viterbi algorithm progress: [%]: ....90..viterbi algorithm progress: [%]: ......10....30..examining piece 1..3976 (3976 bp) .20......40.......30......70..30......................viterbi algorithm progress: [%]: .......................10....70..........................90.....................50......90.50.........20..........40.................................10.....30....................Warning: Block ...........70..............30..100.90.1005020....1060..................... ....100.....unknown_C.......70. is not significant enough, removed from profile. 90.70.......30...2020.......80........9050...............................5050. ....60..........30.......40...40.......1070...... 50.......examining piece ...1...7595 (7595 bp) ......viterbi algorithm progress: [%]: ....10..........60...............20....30...70...40..........40...................30......100Warning: Block .......... .....10...10...30unknown_C is not significant enough, removed from profile. ..........60...4040.......................................40.80..100.....Warning: Block unknown_L is not significant enough, removed from profile. Warning: Block unknown_L is not significant enough, removed from profile. .....examining piece 2128..9763 (7636 bp) ......viterbi algorithm progress: [%]: ...40..100........90.... ....30.........examining piece 1..2726 (2726 bp) ....viterbi algorithm progress: [%]: ....90....60.........50.examining piece 19052..25847 (6796 bp) ..30. ..viterbi algorithm progress: [%]: ....examining piece 1..2104 (2104 bp) 40.viterbi algorithm progress: [%]: ...................70.....................................................100....30.40....50.........50..60........................10100....50.60.80100.. 40.....50......................20............100.90.8050.5020............80..................5080.......30....60......60... ...1060.......30....80.50...705020...............20......... ..........90.10.. ............................60............60..100...........60...60...........10...6070.....80..80........7060..60.70......................70.....30........40................60.....................90...20..70............ ...................70.....70...............70............50..40.30.............10...50....80........100...90...70.......20...............8060.........................80............20................................90...9030..90...............80...80100..........90............. .............30....20.....60.50......50.........40.........80.............3090...9090..............100.70............... ........ .....100..............6080....40...80..........50.........90.............100. .....90..6040......60.100.......70 .40....... 70.....40..........40.....90....90......60...6060.......90.............8070....................50..30....70.............60......7090...................................20...........50.....50..4090.....60..................................................................................100.60.80.....80......80.....7070..........60...100......... 70........70..30........80.40.............9070.................70....70............90100.............................100..10090..................100...70....80......80.......80.80......... ..... 80.40.. .80.... .............80......100100.......90...... .......... .. .........100............. 80.....100100....80..90........90. ....80.90............70................ ...........5090....5090.90...90...100..90........ ....90......90100........70.....100................ .......80....100.........40.90...70....70.100........100. .90100... ...........50.100...60 ....... .100 .100....100.60.50......... ........... ....100100.. ....30..50.... ...............70... ...9070...100...............100....... ... .....80...60...100.. 80........90.................. .....80..90.80.................70........60..90.........100.....100. ........100....40...5080100.. ... 100..90.........90.60... . ..............90...100...... ..................100100.80 .50 ...70....80............60.......70............60.............80..................70.90...70...90..80..90...............................80.........100.100... .10080.. . ..100.. 90......90...........100. 90......100 .......100 Will create parameters for a EUKARYOTIC species! creating directory /gscratch/scrubbed/samwhite/outputs/20190114_oly_busco_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_1662539526/ ... creating /gscratch/scrubbed/samwhite/outputs/20190114_oly_busco_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_1662539526/BUSCO_Olurida_maker_busco_1662539526_parameters.cfg ... creating /gscratch/scrubbed/samwhite/outputs/20190114_oly_busco_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_1662539526/BUSCO_Olurida_maker_busco_1662539526_weightmatrix.txt ... creating /gscratch/scrubbed/samwhite/outputs/20190114_oly_busco_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_1662539526/BUSCO_Olurida_maker_busco_1662539526_metapars.cfg ... The necessary files for training BUSCO_Olurida_maker_busco_1662539526 have been created. Now, either run etraining or optimize_parameters.pl with --species=BUSCO_Olurida_maker_busco_1662539526. etraining quickly estimates the parameters from a file with training genes. optimize_augustus.pl alternates running etraining and augustus to find optimal metaparameters. # Read in 81 genbank sequences. Quantiles of the GC contents in the training set: 0% 0.33 5% 0.339 10% 0.341 15% 0.345 20% 0.346 25% 0.347 30% 0.349 35% 0.35 40% 0.352 45% 0.355 50% 0.357 55% 0.359 60% 0.361 65% 0.362 70% 0.364 75% 0.365 80% 0.367 85% 0.373 90% 0.379 95% 0.387 100% 0.401 HMM-training the parameters... i= 0 bc= (0.237, 0.263, 0.263, 0.237) ** building model for exons *EXON* gene g1.t1 transcr. 1 in sequence Contig86070:2449-10528_1-8054: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig23677:1491-6048_236-4557: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig26838:3984-16267_1-11974: Initial exon does not begin with start codon but with cct gene g1.t1 transcr. 1 in sequence Contig16168:28324-43537_2795-12993: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig38493:2033-6014_4-3981: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig24838:4946-14128_1-9153: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig29164:14271-24776_1-10505: Initial exon does not begin with start codon but with gtg gene g1.t1 transcr. 1 in sequence Contig28832:0-11387_1-11090: coding length not a multiple of 3. Skipping... start codon frequencies: ATG(73) # admissible start codons and their probabilities: ATG(1), CTG(0), TTG(0) number of bases in the reading frames: 25482 25551 25555 --- frame = 0 --- minPatSum = 233 --- frame = 1 --- minPatSum = 233 --- frame = 2 --- minPatSum = 233 --- initial frame = 0 --- minPatSum = 233 --- initial frame = 1 --- minPatSum = 233 --- initial frame = 2 --- minPatSum = 233 --- internal exon terminal frame = 0 --- minPatSum = 233 --- internal exon terminal frame = 1 --- minPatSum = 233 --- internal exon terminal frame = 2 --- minPatSum = 233 single, initial, internal, terminal mean exon lengths : 1187 101 113 166 single exon : 7 initial exon 0 : 21 initial exon 1 : 22 initial exon 2 : 23 internal exon 0 : 199 internal exon 1 : 129 internal exon 2 : 138 terminal exon : 68 Frequency of stop codons: tag: 14 (0.187) taa: 22 (0.293) tga: 39 (0.52) end *EXON* Storing parameters to file... Writing exon model parameters [1] to file /gscratch/scrubbed/samwhite/outputs/20190114_oly_busco_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_1662539526/BUSCO_Olurida_maker_busco_1662539526_exon_probs.pbl. WARNING: parameter --cpus has value 56 but parameter --kfold has value 8. --kfold limits the number of --cpus that can be used. Will not use only 8 CPUs. Please abort and restart with --kfold=56 to really use that number of CPUs! Splitting training file into 8 buckets... Reading in the meta parameters used for optimization from /gscratch/scrubbed/samwhite/outputs/20190114_oly_busco_augustus/augustus/config/species/generic/generic_metapars.cfg... Reading in the starting meta parameters from /gscratch/scrubbed/samwhite/outputs/20190114_oly_busco_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_1662539526/BUSCO_Olurida_maker_busco_1662539526_parameters.cfg... bucket 8 6 2 3 5 7 4 1 starting accuracy: 0.7344, 0.8120, 0.3651, 0.5061, 0.0741, 0.0682, -1.00, -1.00, starting target: 0.5230 improving parameter /Constant/dss_end curently set to 4 1-4 /Constant/dss_end: checking values 1 2 3 4 bucket 8 6 2 3 5 1 4 7 bucket 8 6 2 3 5 1 7 4 bucket 8 6 2 3 5 7 1 4 found improvement: 0.7607, 0.8094, 0.4012, 0.5249, 0.0741, 0.0694, -1.00, -1.00, optimal target: 0.5376 changing /Constant/dss_end to 3 /Constant/dss_end 3 /Constant/dss_start 3 /Constant/ass_start 3 /Constant/ass_end 2 /Constant/ass_upwindow_size 30 /IntronModel/d 100 /IntronModel/ass_motif_memory 3 /IntronModel/ass_motif_radius 3 /ExonModel/tis_motif_memory 3 /ExonModel/tis_motif_radius 2 /Constant/trans_init_window 20 /Constant/init_coding_len 15 /ExonModel/patpseudocount 5.0 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 5 /ExonModel/slope_of_bandwidth 0.3 /ExonModel/minwindowcount 10 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 5.0 /IntronModel/slope_of_bandwidth 0.4 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190114_oly_busco_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_1662539526/BUSCO_Olurida_maker_busco_1662539526_parameters.cfg... retrieve accuracy from previous computation values 1 2 3 4 targets 0.5021 0.5117 0.5376 0.5230 /Constant/dss_end: checking values 3 retrieve accuracy from previous computation values 3 targets 0.5376 improving parameter /Constant/dss_start curently set to 3 1-3 /Constant/dss_start: checking values 1 2 3 bucket 8 6 2 3 5 7 1 4 bucket 8 6 2 3 5 1 7 4 found improvement: 0.7888, 0.8093, 0.4300, 0.5202, 0.0741, 0.0694, -1.00, -1.00, optimal target: 0.5467 changing /Constant/dss_start to 2 /Constant/dss_end 3 /Constant/dss_start 2 /Constant/ass_start 3 /Constant/ass_end 2 /Constant/ass_upwindow_size 30 /IntronModel/d 100 /IntronModel/ass_motif_memory 3 /IntronModel/ass_motif_radius 3 /ExonModel/tis_motif_memory 3 /ExonModel/tis_motif_radius 2 /Constant/trans_init_window 20 /Constant/init_coding_len 15 /ExonModel/patpseudocount 5.0 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 5 /ExonModel/slope_of_bandwidth 0.3 /ExonModel/minwindowcount 10 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 5.0 /IntronModel/slope_of_bandwidth 0.4 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190114_oly_busco_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_1662539526/BUSCO_Olurida_maker_busco_1662539526_parameters.cfg... retrieve accuracy from previous computation values 1 2 3 targets 0.5284 0.5467 0.5376 /Constant/dss_start: checking values 2 retrieve accuracy from previous computation values 2 targets 0.5467 improving parameter /Constant/ass_start curently set to 3 1-3 /Constant/ass_start: checking values 1 2 3 bucket 8 6 2 3 5 4 7 1 found improvement: 0.8083, 0.8146, 0.4891, 0.5801, 0.0730, 0.0656, -1.00, -1.00, optimal target: 0.5737 changing /Constant/ass_start to 1 /Constant/dss_end 3 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 2 /Constant/ass_upwindow_size 30 /IntronModel/d 100 /IntronModel/ass_motif_memory 3 /IntronModel/ass_motif_radius 3 /ExonModel/tis_motif_memory 3 /ExonModel/tis_motif_radius 2 /Constant/trans_init_window 20 /Constant/init_coding_len 15 /ExonModel/patpseudocount 5.0 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 5 /ExonModel/slope_of_bandwidth 0.3 /ExonModel/minwindowcount 10 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 5.0 /IntronModel/slope_of_bandwidth 0.4 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190114_oly_busco_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_1662539526/BUSCO_Olurida_maker_busco_1662539526_parameters.cfg... bucket 8 6 2 3 5 7 4 1 retrieve accuracy from previous computation values 1 2 3 targets 0.5737 0.5680 0.5467 improving parameter /Constant/ass_end curently set to 2 0-4 /Constant/ass_end: checking values 0 1 2 3 4 bucket 8 6 2 3 5 4 7 1 bucket 8 6 2 3 5 1 7 4 retrieve accuracy from previous computation bucket 8 6 2 3 5 7 4 1 bucket 8 6 2 3 5 1 4 7 values 0 1 2 3 4 targets 0.5648 0.5701 0.5737 0.5597 0.5228 improving parameter /Constant/ass_upwindow_size curently set to 30 1-50 /Constant/ass_upwindow_size: checking values 1 13 25 37 50 bucket 8 6 2 3 5 4 7 1 bucket 8 6 2 3 5 4 7 1 bucket 8 6 2 3 5 7 1 4 bucket 8 6 2 3 5 7 1 4 bucket 8 6 2 3 5 1 7 4 values 1 13 25 37 50 targets 0.5139 0.5589 0.5719 0.5698 0.5643 improving parameter /IntronModel/d curently set to 100 100-950 /IntronModel/d: checking values 100 312 525 737 950 retrieve accuracy from previous computation bucket 8 6 2 3 5 4 1 7 found improvement: 0.8129, 0.8117, 0.4958, 0.5785, 0.0730, 0.0646, -1.00, -1.00, optimal target: 0.5749 changing /IntronModel/d to 312 /Constant/dss_end 3 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 2 /Constant/ass_upwindow_size 30 /IntronModel/d 312 /IntronModel/ass_motif_memory 3 /IntronModel/ass_motif_radius 3 /ExonModel/tis_motif_memory 3 /ExonModel/tis_motif_radius 2 /Constant/trans_init_window 20 /Constant/init_coding_len 15 /ExonModel/patpseudocount 5.0 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 5 /ExonModel/slope_of_bandwidth 0.3 /ExonModel/minwindowcount 10 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 5.0 /IntronModel/slope_of_bandwidth 0.4 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190114_oly_busco_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_1662539526/BUSCO_Olurida_maker_busco_1662539526_parameters.cfg... bucket 8 6 2 3 5 1 7 4 found improvement: 0.8208, 0.8151, 0.5069, 0.5816, 0.0855, 0.0770, -1.00, -1.00, optimal target: 0.5819 changing /IntronModel/d to 525 /Constant/dss_end 3 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 2 /Constant/ass_upwindow_size 30 /IntronModel/d 525 /IntronModel/ass_motif_memory 3 /IntronModel/ass_motif_radius 3 /ExonModel/tis_motif_memory 3 /ExonModel/tis_motif_radius 2 /Constant/trans_init_window 20 /Constant/init_coding_len 15 /ExonModel/patpseudocount 5.0 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 5 /ExonModel/slope_of_bandwidth 0.3 /ExonModel/minwindowcount 10 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 5.0 /IntronModel/slope_of_bandwidth 0.4 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190114_oly_busco_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_1662539526/BUSCO_Olurida_maker_busco_1662539526_parameters.cfg... bucket 6 8 2 3 5 1 7 4 bucket 6 8 2 3 5 7 1 4 values 100 312 525 737 950 targets 0.5737 0.5749 0.5819 0.5788 0.5785 /IntronModel/d: checking values 313 419 525 631 737 bucket 8 6 2 3 5 4 7 1 bucket 8 6 2 3 5 1 7 4 retrieve accuracy from previous computation bucket 6 8 2 3 5 7 1 4 retrieve accuracy from previous computation values 313 419 525 631 737 targets 0.5749 0.5781 0.5819 0.5810 0.5788 improving parameter /IntronModel/ass_motif_memory curently set to 3 0-3 /IntronModel/ass_motif_memory: checking values 0 1 2 3 bucket 8 6 2 3 5 4 1 7 bucket 8 6 2 5 3 1 4 7 found improvement: 0.8283, 0.8161, 0.5158, 0.5895, 0.0855, 0.0758, -1.00, -1.00, optimal target: 0.5864 changing /IntronModel/ass_motif_memory to 1 /Constant/dss_end 3 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 2 /Constant/ass_upwindow_size 30 /IntronModel/d 525 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 3 /ExonModel/tis_motif_memory 3 /ExonModel/tis_motif_radius 2 /Constant/trans_init_window 20 /Constant/init_coding_len 15 /ExonModel/patpseudocount 5.0 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 5 /ExonModel/slope_of_bandwidth 0.3 /ExonModel/minwindowcount 10 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 5.0 /IntronModel/slope_of_bandwidth 0.4 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190114_oly_busco_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_1662539526/BUSCO_Olurida_maker_busco_1662539526_parameters.cfg... bucket 8 6 2 3 5 4 1 7 retrieve accuracy from previous computation values 0 1 2 3 targets 0.5817 0.5864 0.5852 0.5819 /IntronModel/ass_motif_memory: checking values 1 retrieve accuracy from previous computation values 1 targets 0.5864 improving parameter /IntronModel/ass_motif_radius curently set to 3 0-4 /IntronModel/ass_motif_radius: checking values 0 1 2 3 4 bucket 8 6 2 3 5 7 4 1 bucket 8 6 2 3 5 4 7 1 found improvement: 0.8214, 0.8159, 0.5164, 0.6028, 0.0855, 0.0758, -1.00, -1.00, optimal target: 0.5881 changing /IntronModel/ass_motif_radius to 1 /Constant/dss_end 3 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 2 /Constant/ass_upwindow_size 30 /IntronModel/d 525 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 3 /ExonModel/tis_motif_radius 2 /Constant/trans_init_window 20 /Constant/init_coding_len 15 /ExonModel/patpseudocount 5.0 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 5 /ExonModel/slope_of_bandwidth 0.3 /ExonModel/minwindowcount 10 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 5.0 /IntronModel/slope_of_bandwidth 0.4 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190114_oly_busco_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_1662539526/BUSCO_Olurida_maker_busco_1662539526_parameters.cfg... bucket 6 8 2 3 5 4 1 7 retrieve accuracy from previous computation bucket 8 6 2 3 5 4 7 1 values 0 1 2 3 4 targets 0.5849 0.5881 0.5875 0.5864 0.5866 /IntronModel/ass_motif_radius: checking values 1 2 retrieve accuracy from previous computation retrieve accuracy from previous computation values 1 2 targets 0.5881 0.5875 improving parameter /ExonModel/tis_motif_memory curently set to 3 0-3 /ExonModel/tis_motif_memory: checking values 0 1 2 3 bucket 8 6 2 3 5 4 1 7 found improvement: 0.8246, 0.8111, 0.5308, 0.6056, 0.0830, 0.0732, -1.00, -1.00, optimal target: 0.5908 changing /ExonModel/tis_motif_memory to 0 /Constant/dss_end 3 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 2 /Constant/ass_upwindow_size 30 /IntronModel/d 525 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 0 /ExonModel/tis_motif_radius 2 /Constant/trans_init_window 20 /Constant/init_coding_len 15 /ExonModel/patpseudocount 5.0 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 5 /ExonModel/slope_of_bandwidth 0.3 /ExonModel/minwindowcount 10 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 5.0 /IntronModel/slope_of_bandwidth 0.4 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190114_oly_busco_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_1662539526/BUSCO_Olurida_maker_busco_1662539526_parameters.cfg... bucket 8 6 2 3 5 7 1 4 found improvement: 0.8244, 0.8182, 0.5274, 0.6112, 0.0830, 0.0766, -1.00, -1.00, optimal target: 0.5926 changing /ExonModel/tis_motif_memory to 1 /Constant/dss_end 3 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 2 /Constant/ass_upwindow_size 30 /IntronModel/d 525 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 2 /Constant/trans_init_window 20 /Constant/init_coding_len 15 /ExonModel/patpseudocount 5.0 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 5 /ExonModel/slope_of_bandwidth 0.3 /ExonModel/minwindowcount 10 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 5.0 /IntronModel/slope_of_bandwidth 0.4 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190114_oly_busco_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_1662539526/BUSCO_Olurida_maker_busco_1662539526_parameters.cfg... bucket 8 6 2 3 5 7 1 4 retrieve accuracy from previous computation values 0 1 2 3 targets 0.5908 0.5926 0.5900 0.5881 /ExonModel/tis_motif_memory: checking values 1 retrieve accuracy from previous computation values 1 targets 0.5926 improving parameter /ExonModel/tis_motif_radius curently set to 2 0-3 /ExonModel/tis_motif_radius: checking values 0 1 2 3 bucket 8 6 2 3 5 7 4 1 bucket 8 6 2 3 5 7 1 4 found improvement: 0.8243, 0.8159, 0.5265, 0.6077, 0.1094, 0.0964, -1.00, -1.00, optimal target: 0.5960 changing /ExonModel/tis_motif_radius to 1 /Constant/dss_end 3 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 2 /Constant/ass_upwindow_size 30 /IntronModel/d 525 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 20 /Constant/init_coding_len 15 /ExonModel/patpseudocount 5.0 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 5 /ExonModel/slope_of_bandwidth 0.3 /ExonModel/minwindowcount 10 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 5.0 /IntronModel/slope_of_bandwidth 0.4 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190114_oly_busco_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_1662539526/BUSCO_Olurida_maker_busco_1662539526_parameters.cfg... retrieve accuracy from previous computation bucket 8 6 2 3 5 1 4 7 values 0 1 2 3 targets 0.5926 0.5960 0.5926 0.5912 /ExonModel/tis_motif_radius: checking values 1 retrieve accuracy from previous computation values 1 targets 0.5960 improving parameter /Constant/trans_init_window curently set to 20 0-25 /Constant/trans_init_window: checking values 0 6 12 18 25 bucket 8 6 2 3 5 1 4 7 bucket 8 6 2 3 5 1 7 4 found improvement: 0.8232, 0.8151, 0.5271, 0.6116, 0.1094, 0.0941, -1.00, -1.00, optimal target: 0.5964 changing /Constant/trans_init_window to 6 /Constant/dss_end 3 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 2 /Constant/ass_upwindow_size 30 /IntronModel/d 525 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 6 /Constant/init_coding_len 15 /ExonModel/patpseudocount 5.0 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 5 /ExonModel/slope_of_bandwidth 0.3 /ExonModel/minwindowcount 10 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 5.0 /IntronModel/slope_of_bandwidth 0.4 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190114_oly_busco_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_1662539526/BUSCO_Olurida_maker_busco_1662539526_parameters.cfg... bucket 8 6 2 3 5 1 7 4 bucket 8 6 2 3 5 4 1 7 bucket 8 6 2 3 5 4 1 7 values 0 6 12 18 25 targets 0.5916 0.5964 0.5917 0.5955 0.5943 /Constant/trans_init_window: checking values 1 3 6 9 12 bucket 8 6 2 3 5 7 4 1 bucket 8 6 2 3 5 7 4 1 retrieve accuracy from previous computation bucket 8 6 2 3 5 4 1 7 retrieve accuracy from previous computation values 1 3 6 9 12 targets 0.5883 0.5933 0.5964 0.5925 0.5917 improving parameter /Constant/init_coding_len curently set to 15 0-18 /Constant/init_coding_len: checking values 0 4 9 13 18 bucket 8 6 2 3 5 7 4 1 found improvement: 0.8317, 0.8125, 0.5290, 0.6064, 0.1482, 0.1255, -1.00, -1.00, optimal target: 0.6036 changing /Constant/init_coding_len to 0 /Constant/dss_end 3 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 2 /Constant/ass_upwindow_size 30 /IntronModel/d 525 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 6 /Constant/init_coding_len 0 /ExonModel/patpseudocount 5.0 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 5 /ExonModel/slope_of_bandwidth 0.3 /ExonModel/minwindowcount 10 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 5.0 /IntronModel/slope_of_bandwidth 0.4 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190114_oly_busco_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_1662539526/BUSCO_Olurida_maker_busco_1662539526_parameters.cfg... bucket 8 6 2 3 5 7 1 4 bucket 8 6 2 3 5 1 4 7 bucket 8 6 2 3 5 1 7 4 bucket 8 6 2 3 5 1 7 4 values 0 4 9 13 18 targets 0.6036 0.6003 0.5960 0.5961 0.5980 /Constant/init_coding_len: checking values 1 2 3 4 bucket 8 6 2 3 5 7 1 4 bucket 8 6 2 3 5 4 7 1 bucket 8 6 2 3 5 7 4 1 retrieve accuracy from previous computation values 1 2 3 4 targets 0.5994 0.6035 0.6028 0.6003 improving parameter /ExonModel/patpseudocount curently set to 5.0 0.5-5 /ExonModel/patpseudocount: checking values 0.5 1.625 2.75 3.875 5 bucket 8 6 2 3 5 7 4 1 found improvement: 0.8484, 0.8323, 0.5509, 0.6429, 0.1471, 0.1247, -1.00, -1.00, optimal target: 0.6206 changing /ExonModel/patpseudocount to 0.5 /Constant/dss_end 3 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 2 /Constant/ass_upwindow_size 30 /IntronModel/d 525 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 6 /Constant/init_coding_len 0 /ExonModel/patpseudocount 0.5 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 5 /ExonModel/slope_of_bandwidth 0.3 /ExonModel/minwindowcount 10 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 5.0 /IntronModel/slope_of_bandwidth 0.4 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190114_oly_busco_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_1662539526/BUSCO_Olurida_maker_busco_1662539526_parameters.cfg... bucket 8 6 2 3 5 1 7 4 bucket 8 6 2 3 5 4 7 1 bucket 8 2 6 3 5 4 7 1 bucket 8 6 2 3 5 7 1 4 values 0.5 1.625 2.75 3.875 5 targets 0.6206 0.6162 0.6148 0.6102 0.6036 /ExonModel/patpseudocount: checking values 0.5 0.78125 1.0625 1.34375 1.625 retrieve accuracy from previous computation bucket 8 6 2 3 5 4 7 1 found improvement: 0.8461, 0.8307, 0.5525, 0.6491, 0.1471, 0.1247, -1.00, -1.00, optimal target: 0.6216 changing /ExonModel/patpseudocount to 0.78125 /Constant/dss_end 3 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 2 /Constant/ass_upwindow_size 30 /IntronModel/d 525 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 6 /Constant/init_coding_len 0 /ExonModel/patpseudocount 0.78125 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 5 /ExonModel/slope_of_bandwidth 0.3 /ExonModel/minwindowcount 10 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 5.0 /IntronModel/slope_of_bandwidth 0.4 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190114_oly_busco_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_1662539526/BUSCO_Olurida_maker_busco_1662539526_parameters.cfg... bucket 8 6 2 3 5 4 1 7 bucket 8 6 2 3 5 1 7 4 retrieve accuracy from previous computation values 0.5 0.78125 1.0625 1.34375 1.625 targets 0.6206 0.6216 0.6210 0.6172 0.6162 /ExonModel/patpseudocount: checking values 0.5 0.640625 0.78125 0.921875 1.0625 retrieve accuracy from previous computation bucket 8 6 2 3 5 7 1 4 retrieve accuracy from previous computation bucket 8 6 2 3 5 4 1 7 found improvement: 0.8468, 0.8309, 0.5525, 0.6491, 0.1471, 0.1247, -1.00, -1.00, optimal target: 0.6217 changing /ExonModel/patpseudocount to 0.921875 /Constant/dss_end 3 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 2 /Constant/ass_upwindow_size 30 /IntronModel/d 525 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 6 /Constant/init_coding_len 0 /ExonModel/patpseudocount 0.921875 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 5 /ExonModel/slope_of_bandwidth 0.3 /ExonModel/minwindowcount 10 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 5.0 /IntronModel/slope_of_bandwidth 0.4 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190114_oly_busco_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_1662539526/BUSCO_Olurida_maker_busco_1662539526_parameters.cfg... retrieve accuracy from previous computation values 0.5 0.640625 0.78125 0.921875 1.0625 targets 0.6206 0.6213 0.6216 0.6217 0.6210 /ExonModel/patpseudocount: checking values 0.78125 0.8515625 0.921875 0.9921875 1.0625 retrieve accuracy from previous computation bucket 8 6 2 3 5 4 1 7 retrieve accuracy from previous computation bucket 8 2 6 3 5 1 4 7 retrieve accuracy from previous computation values 0.78125 0.8515625 0.921875 0.9921875 1.0625 targets 0.6216 0.6217 0.6217 0.6210 0.6210 improving parameter /ExonModel/etpseudocount curently set to 3 0-10 /ExonModel/etpseudocount: checking values 0 2 5 7 10 bucket 8 6 2 3 5 4 1 7 bucket 8 6 2 3 5 1 7 4 bucket 8 6 2 3 5 4 7 1 bucket 8 2 6 3 5 1 4 7 bucket 8 6 2 3 5 4 7 1 values 0 2 5 7 10 targets 0.6217 0.6217 0.6217 0.6217 0.6217 improving parameter /ExonModel/etorder curently set to 2 0-3 /ExonModel/etorder: checking values 0 1 2 3 bucket 8 6 2 3 5 4 7 1 bucket 8 6 2 3 5 1 7 4 retrieve accuracy from previous computation bucket 8 6 2 3 5 4 1 7 values 0 1 2 3 targets 0.6217 0.6217 0.6217 0.6217 improving parameter /Constant/intterm_coding_len curently set to 5 0-13 /Constant/intterm_coding_len: checking values 0 3 6 9 13 bucket 8 6 2 3 5 4 1 7 found improvement: 0.8513, 0.8329, 0.5656, 0.6499, 0.1332, 0.1176, -1.00, -1.00, optimal target: 0.6234 changing /Constant/intterm_coding_len to 0 /Constant/dss_end 3 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 2 /Constant/ass_upwindow_size 30 /IntronModel/d 525 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 6 /Constant/init_coding_len 0 /ExonModel/patpseudocount 0.921875 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 0 /ExonModel/slope_of_bandwidth 0.3 /ExonModel/minwindowcount 10 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 5.0 /IntronModel/slope_of_bandwidth 0.4 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190114_oly_busco_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_1662539526/BUSCO_Olurida_maker_busco_1662539526_parameters.cfg... bucket 6 8 2 3 5 1 4 7 bucket 8 6 2 3 5 1 7 4 bucket 8 6 2 3 5 7 1 4 bucket 8 6 2 3 5 7 4 1 values 0 3 6 9 13 targets 0.6234 0.6218 0.6204 0.6145 0.6102 /Constant/intterm_coding_len: checking values 1 2 3 bucket 8 6 2 3 5 7 4 1 bucket 8 6 2 3 5 4 1 7 retrieve accuracy from previous computation values 1 2 3 targets 0.6205 0.6204 0.6218 improving parameter /ExonModel/slope_of_bandwidth curently set to 0.3 0.05-0.6 /ExonModel/slope_of_bandwidth: checking values 0.05 0.1875 0.325 0.4625 0.6 bucket 8 6 2 3 5 1 4 7 bucket 8 6 2 3 5 1 7 4 bucket 8 6 2 3 5 1 4 7 bucket 8 6 2 3 5 7 1 4 bucket 8 6 2 3 5 7 1 4 values 0.05 0.1875 0.325 0.4625 0.6 targets 0.6226 0.6223 0.6226 0.6201 0.6196 improving parameter /ExonModel/minwindowcount curently set to 10 1-15 /ExonModel/minwindowcount: checking values 1 4 8 11 15 bucket 6 8 2 3 5 4 1 7 bucket 6 8 2 3 5 1 7 4 bucket 8 6 2 3 5 7 1 4 bucket 8 6 2 3 5 1 4 7 bucket 8 6 2 3 5 4 1 7 found improvement: 0.8513, 0.8327, 0.5654, 0.6556, 0.1332, 0.1176, -1.00, -1.00, optimal target: 0.6244 changing /ExonModel/minwindowcount to 15 /Constant/dss_end 3 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 2 /Constant/ass_upwindow_size 30 /IntronModel/d 525 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 6 /Constant/init_coding_len 0 /ExonModel/patpseudocount 0.921875 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 0 /ExonModel/slope_of_bandwidth 0.3 /ExonModel/minwindowcount 15 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 5.0 /IntronModel/slope_of_bandwidth 0.4 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190114_oly_busco_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_1662539526/BUSCO_Olurida_maker_busco_1662539526_parameters.cfg... values 1 4 8 11 15 targets 0.6083 0.6174 0.6212 0.6233 0.6244 /ExonModel/minwindowcount: checking values 12 13 14 15 bucket 8 6 2 3 5 1 4 7 bucket 8 6 2 3 5 7 4 1 bucket 8 6 2 3 5 7 4 1 retrieve accuracy from previous computation values 12 13 14 15 targets 0.6221 0.6238 0.6244 0.6244 improving parameter /IGenicModel/patpseudocount curently set to 5.0 0.5-7 /IGenicModel/patpseudocount: checking values 0.5 2.125 3.75 5.375 7 bucket 8 6 2 3 5 7 1 4 bucket 8 6 2 3 5 1 4 7 bucket 8 6 2 3 5 7 1 4 bucket 8 6 2 5 3 1 4 7 bucket 8 6 2 3 5 7 1 4 values 0.5 2.125 3.75 5.375 7 targets 0.6244 0.6244 0.6244 0.6244 0.6244 improving parameter /IntronModel/patpseudocount curently set to 5.0 0.5-7 /IntronModel/patpseudocount: checking values 0.5 2.125 3.75 5.375 7 bucket 8 6 2 3 5 1 4 7 found improvement: 0.8519, 0.8249, 0.5611, 0.6460, 0.1585, 0.1374, -1.00, -1.00, optimal target: 0.6251 changing /IntronModel/patpseudocount to 0.5 /Constant/dss_end 3 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 2 /Constant/ass_upwindow_size 30 /IntronModel/d 525 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 6 /Constant/init_coding_len 0 /ExonModel/patpseudocount 0.921875 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 0 /ExonModel/slope_of_bandwidth 0.3 /ExonModel/minwindowcount 15 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 0.5 /IntronModel/slope_of_bandwidth 0.4 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190114_oly_busco_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_1662539526/BUSCO_Olurida_maker_busco_1662539526_parameters.cfg... bucket 6 8 2 3 5 7 4 1 bucket 8 6 2 3 5 4 7 1 bucket 8 6 2 3 5 4 7 1 bucket 6 8 2 3 5 1 7 4 found improvement: 0.8511, 0.8325, 0.5670, 0.6586, 0.1332, 0.1198, -1.00, -1.00, optimal target: 0.6255 changing /IntronModel/patpseudocount to 7 /Constant/dss_end 3 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 2 /Constant/ass_upwindow_size 30 /IntronModel/d 525 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 6 /Constant/init_coding_len 0 /ExonModel/patpseudocount 0.921875 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 0 /ExonModel/slope_of_bandwidth 0.3 /ExonModel/minwindowcount 15 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 7 /IntronModel/slope_of_bandwidth 0.4 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190114_oly_busco_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_1662539526/BUSCO_Olurida_maker_busco_1662539526_parameters.cfg... values 0.5 2.125 3.75 5.375 7 targets 0.6251 0.6215 0.6234 0.6247 0.6255 /IntronModel/patpseudocount: checking values 5.375 5.78125 6.1875 6.59375 7 retrieve accuracy from previous computation bucket 8 2 6 3 5 4 7 1 bucket 6 8 2 3 5 7 1 4 bucket 8 6 2 3 5 1 4 7 retrieve accuracy from previous computation values 5.375 5.78125 6.1875 6.59375 7 targets 0.6247 0.6254 0.6255 0.6255 0.6255 improving parameter /IntronModel/slope_of_bandwidth curently set to 0.4 0.05-0.6 /IntronModel/slope_of_bandwidth: checking values 0.05 0.1875 0.325 0.4625 0.6 bucket 8 6 2 3 5 4 1 7 found improvement: 0.8498, 0.8370, 0.5649, 0.6589, 0.1471, 0.1323, -1.00, -1.00, optimal target: 0.6283 changing /IntronModel/slope_of_bandwidth to 0.05 /Constant/dss_end 3 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 2 /Constant/ass_upwindow_size 30 /IntronModel/d 525 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 6 /Constant/init_coding_len 0 /ExonModel/patpseudocount 0.921875 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 0 /ExonModel/slope_of_bandwidth 0.3 /ExonModel/minwindowcount 15 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 7 /IntronModel/slope_of_bandwidth 0.05 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190114_oly_busco_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_1662539526/BUSCO_Olurida_maker_busco_1662539526_parameters.cfg... bucket 6 8 2 3 5 1 7 4 bucket 8 6 2 3 5 4 1 7 found improvement: 0.8511, 0.8349, 0.5670, 0.6599, 0.1471, 0.1323, -1.00, -1.00, optimal target: 0.6288 changing /IntronModel/slope_of_bandwidth to 0.325 /Constant/dss_end 3 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 2 /Constant/ass_upwindow_size 30 /IntronModel/d 525 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 6 /Constant/init_coding_len 0 /ExonModel/patpseudocount 0.921875 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 0 /ExonModel/slope_of_bandwidth 0.3 /ExonModel/minwindowcount 15 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 7 /IntronModel/slope_of_bandwidth 0.325 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190114_oly_busco_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_1662539526/BUSCO_Olurida_maker_busco_1662539526_parameters.cfg... bucket 8 6 2 3 5 1 4 7 bucket 8 6 2 3 5 7 4 1 values 0.05 0.1875 0.325 0.4625 0.6 targets 0.6283 0.6280 0.6288 0.6258 0.6249 /IntronModel/slope_of_bandwidth: checking values 0.1875 0.25625 0.325 0.39375 0.4625 retrieve accuracy from previous computation bucket 8 6 2 3 5 1 7 4 retrieve accuracy from previous computation bucket 6 8 2 3 5 1 4 7 retrieve accuracy from previous computation values 0.1875 0.25625 0.325 0.39375 0.4625 targets 0.6280 0.6282 0.6288 0.6255 0.6258 improving parameter /IntronModel/minwindowcount curently set to 4 1-8 /IntronModel/minwindowcount: checking values 1 2 4 6 8 bucket 8 6 2 3 5 1 4 7 bucket 8 6 2 3 5 1 7 4 retrieve accuracy from previous computation bucket 8 6 2 3 5 4 1 7 found improvement: 0.8510, 0.8350, 0.5670, 0.6610, 0.1471, 0.1323, -1.00, -1.00, optimal target: 0.6290 changing /IntronModel/minwindowcount to 6 /Constant/dss_end 3 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 2 /Constant/ass_upwindow_size 30 /IntronModel/d 525 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 6 /Constant/init_coding_len 0 /ExonModel/patpseudocount 0.921875 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 0 /ExonModel/slope_of_bandwidth 0.3 /ExonModel/minwindowcount 15 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 7 /IntronModel/slope_of_bandwidth 0.325 /IntronModel/minwindowcount 6 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190114_oly_busco_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_1662539526/BUSCO_Olurida_maker_busco_1662539526_parameters.cfg... bucket 8 6 2 3 5 7 1 4 values 1 2 4 6 8 targets 0.6288 0.6288 0.6288 0.6290 0.6249 /IntronModel/minwindowcount: checking values 5 6 7 bucket 8 6 2 3 5 4 1 7 retrieve accuracy from previous computation bucket 8 6 2 3 5 7 1 4 values 5 6 7 targets 0.6288 0.6290 0.6290 improving parameter /IntronModel/asspseudocount curently set to 0.00266 0.0005-0.03 /IntronModel/asspseudocount: checking values 0.0005 0.007875 0.01525 0.022625 0.03 bucket 8 6 2 3 5 7 4 1 bucket 8 6 2 3 5 7 4 1 bucket 8 6 2 3 5 4 7 1 found improvement: 0.8549, 0.8351, 0.5685, 0.6590, 0.1471, 0.1323, -1.00, -1.00, optimal target: 0.6295 changing /IntronModel/asspseudocount to 0.01525 /Constant/dss_end 3 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 2 /Constant/ass_upwindow_size 30 /IntronModel/d 525 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 6 /Constant/init_coding_len 0 /ExonModel/patpseudocount 0.921875 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 0 /ExonModel/slope_of_bandwidth 0.3 /ExonModel/minwindowcount 15 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 7 /IntronModel/slope_of_bandwidth 0.325 /IntronModel/minwindowcount 6 /IntronModel/asspseudocount 0.01525 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190114_oly_busco_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_1662539526/BUSCO_Olurida_maker_busco_1662539526_parameters.cfg... bucket 8 6 2 3 5 7 4 1 bucket 8 6 2 3 5 7 1 4 values 0.0005 0.007875 0.01525 0.022625 0.03 targets 0.6290 0.6290 0.6295 0.6295 0.6295 /IntronModel/asspseudocount: checking values 0.007875 0.0115625 0.01525 0.0189375 0.022625 retrieve accuracy from previous computation bucket 8 6 2 3 5 4 1 7 retrieve accuracy from previous computation bucket 8 6 2 3 5 7 4 1 retrieve accuracy from previous computation values 0.007875 0.0115625 0.01525 0.0189375 0.022625 targets 0.6290 0.6290 0.6295 0.6295 0.6295 improving parameter /IntronModel/dsspseudocount curently set to 0.0005 0.0002-0.04 /IntronModel/dsspseudocount: checking values 0.0002 0.01015 0.0201 0.03005 0.04 bucket 8 2 6 3 5 1 4 7 bucket 8 6 2 3 5 4 1 7 bucket 8 6 2 3 5 1 7 4 bucket 8 6 2 3 5 1 4 7 bucket 8 6 2 3 5 1 7 4 values 0.0002 0.01015 0.0201 0.03005 0.04 targets 0.6295 0.6238 0.6203 0.6204 0.6204 improving parameter /IntronModel/dssneighborfactor curently set to 0.00173 0.0001-0.01 /IntronModel/dssneighborfactor: checking values 0.0001 0.002575 0.00505 0.007525 0.01 bucket 6 8 2 3 5 7 1 4 bucket 8 6 2 3 5 1 4 7 bucket 8 6 2 3 5 1 4 7 bucket 8 6 2 3 5 1 4 7 bucket 8 6 2 3 5 1 7 4 values 0.0001 0.002575 0.00505 0.007525 0.01 targets 0.6241 0.6249 0.6256 0.6257 0.6234 improving parameter /ExonModel/minPatSum curently set to 233.3 100-600 /ExonModel/minPatSum: checking values 100 225 350 475 600 bucket 8 6 2 3 5 7 4 1 bucket 8 6 2 3 5 4 1 7 found improvement: 0.8553, 0.8354, 0.5699, 0.6597, 0.1471, 0.1323, -1.00, -1.00, optimal target: 0.6300 changing /ExonModel/minPatSum to 225 /Constant/dss_end 3 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 2 /Constant/ass_upwindow_size 30 /IntronModel/d 525 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 6 /Constant/init_coding_len 0 /ExonModel/patpseudocount 0.921875 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 0 /ExonModel/slope_of_bandwidth 0.3 /ExonModel/minwindowcount 15 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 7 /IntronModel/slope_of_bandwidth 0.325 /IntronModel/minwindowcount 6 /IntronModel/asspseudocount 0.01525 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 225 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190114_oly_busco_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_1662539526/BUSCO_Olurida_maker_busco_1662539526_parameters.cfg... bucket 8 6 2 3 5 7 4 1 found improvement: 0.8610, 0.8379, 0.5679, 0.6589, 0.1471, 0.1301, -1.00, -1.00, optimal target: 0.6305 changing /ExonModel/minPatSum to 350 /Constant/dss_end 3 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 2 /Constant/ass_upwindow_size 30 /IntronModel/d 525 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 6 /Constant/init_coding_len 0 /ExonModel/patpseudocount 0.921875 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 0 /ExonModel/slope_of_bandwidth 0.3 /ExonModel/minwindowcount 15 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 7 /IntronModel/slope_of_bandwidth 0.325 /IntronModel/minwindowcount 6 /IntronModel/asspseudocount 0.01525 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 350 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190114_oly_busco_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_1662539526/BUSCO_Olurida_maker_busco_1662539526_parameters.cfg... bucket 8 6 2 3 5 1 7 4 bucket 6 8 2 3 5 7 1 4 values 100 225 350 475 600 targets 0.6168 0.6300 0.6305 0.6293 0.6293 /ExonModel/minPatSum: checking values 225 287.5 350 412.5 475 retrieve accuracy from previous computation bucket 8 6 2 5 3 1 4 7 found improvement: 0.8619, 0.8353, 0.5666, 0.6550, 0.1585, 0.1374, -1.00, -1.00, optimal target: 0.6311 changing /ExonModel/minPatSum to 287.5 /Constant/dss_end 3 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 2 /Constant/ass_upwindow_size 30 /IntronModel/d 525 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 6 /Constant/init_coding_len 0 /ExonModel/patpseudocount 0.921875 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 0 /ExonModel/slope_of_bandwidth 0.3 /ExonModel/minwindowcount 15 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 7 /IntronModel/slope_of_bandwidth 0.325 /IntronModel/minwindowcount 6 /IntronModel/asspseudocount 0.01525 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 287.5 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190114_oly_busco_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_1662539526/BUSCO_Olurida_maker_busco_1662539526_parameters.cfg... retrieve accuracy from previous computation bucket 8 6 2 3 5 7 4 1 retrieve accuracy from previous computation values 225 287.5 350 412.5 475 targets 0.6300 0.6311 0.6305 0.6293 0.6293 /ExonModel/minPatSum: checking values 225 256.25 287.5 318.75 350 retrieve accuracy from previous computation bucket 8 6 2 3 5 1 4 7 retrieve accuracy from previous computation bucket 8 6 2 3 5 1 7 4 retrieve accuracy from previous computation values 225 256.25 287.5 318.75 350 targets 0.6300 0.6310 0.6311 0.6294 0.6305 improving parameter /Constant/probNinCoding curently set to 0.23 0.15-.25 /Constant/probNinCoding: checking values 0.15 0.175 0.2 0.225 0.25 bucket 8 2 6 3 5 7 1 4 bucket 8 6 2 3 5 7 1 4 bucket 8 6 2 3 5 4 1 7 bucket 6 8 2 3 5 7 1 4 bucket 8 6 2 3 5 1 4 7 values 0.15 0.175 0.2 0.225 0.25 targets 0.6267 0.6267 0.6267 0.6310 0.6307 improving parameter /Constant/decomp_num_steps curently set to 1 1-5 /Constant/decomp_num_steps: checking values 1 2 3 4 5 retrieve accuracy from previous computation bucket 8 6 2 3 5 4 1 7 bucket 8 2 6 3 5 1 4 7 bucket 6 8 2 3 5 4 1 7 bucket 8 6 2 3 5 1 7 4 values 1 2 3 4 5 targets 0.6311 0.6063 0.5968 0.6042 0.6049 improving parameter /Constant/dss_end curently set to 3 1-4 /Constant/dss_end: checking values 1 2 3 4 bucket 8 6 2 3 5 1 4 7 bucket 8 6 2 3 5 7 1 4 retrieve accuracy from previous computation bucket 8 6 2 3 5 4 7 1 values 1 2 3 4 targets 0.5924 0.6075 0.6311 0.6279 improving parameter /Constant/dss_start curently set to 2 1-3 /Constant/dss_start: checking values 1 2 3 bucket 8 6 2 3 5 7 1 4 retrieve accuracy from previous computation bucket 8 6 2 3 5 1 4 7 values 1 2 3 targets 0.6101 0.6311 0.6109 improving parameter /Constant/ass_start curently set to 1 1-3 /Constant/ass_start: checking values 1 2 3 retrieve accuracy from previous computation bucket 8 6 2 3 5 7 1 4 found improvement: 0.8620, 0.8429, 0.5714, 0.6651, 0.1585, 0.1443, -1.00, -1.00, optimal target: 0.6359 changing /Constant/ass_start to 2 /Constant/dss_end 3 /Constant/dss_start 2 /Constant/ass_start 2 /Constant/ass_end 2 /Constant/ass_upwindow_size 30 /IntronModel/d 525 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 6 /Constant/init_coding_len 0 /ExonModel/patpseudocount 0.921875 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 0 /ExonModel/slope_of_bandwidth 0.3 /ExonModel/minwindowcount 15 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 7 /IntronModel/slope_of_bandwidth 0.325 /IntronModel/minwindowcount 6 /IntronModel/asspseudocount 0.01525 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 287.5 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190114_oly_busco_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_1662539526/BUSCO_Olurida_maker_busco_1662539526_parameters.cfg... bucket 8 6 2 3 5 4 1 7 values 1 2 3 targets 0.6311 0.6359 0.6243 /Constant/ass_start: checking values 2 retrieve accuracy from previous computation values 2 targets 0.6359 improving parameter /Constant/ass_end curently set to 2 0-4 /Constant/ass_end: checking values 0 1 2 3 4 bucket 8 6 2 3 5 7 1 4 bucket 8 6 2 3 5 7 4 1 retrieve accuracy from previous computation bucket 8 6 2 3 5 1 7 4 bucket 8 6 2 3 5 4 1 7 values 0 1 2 3 4 targets 0.6297 0.6333 0.6359 0.5997 0.5719 improving parameter /Constant/ass_upwindow_size curently set to 30 1-50 /Constant/ass_upwindow_size: checking values 1 13 25 37 50 bucket 8 6 2 3 5 1 7 4 bucket 8 6 2 3 5 7 4 1 bucket 8 6 2 3 5 1 4 7 bucket 8 6 2 3 5 4 1 7 bucket 8 6 2 3 5 1 4 7 values 1 13 25 37 50 targets 0.5540 0.6232 0.6314 0.6295 0.6317 improving parameter /IntronModel/d curently set to 525 100-950 /IntronModel/d: checking values 100 312 525 737 950 bucket 8 6 2 3 5 1 4 7 bucket 8 6 2 3 5 7 4 1 retrieve accuracy from previous computation bucket 6 8 2 3 5 7 4 1 bucket 8 6 2 3 5 1 7 4 values 100 312 525 737 950 targets 0.6286 0.6342 0.6359 0.6338 0.6347 improving parameter /IntronModel/ass_motif_memory curently set to 1 0-3 /IntronModel/ass_motif_memory: checking values 0 1 2 3 bucket 8 6 2 3 5 7 4 1 retrieve accuracy from previous computation bucket 8 6 2 3 5 1 7 4 bucket 8 6 2 3 5 4 1 7 values 0 1 2 3 targets 0.6219 0.6359 0.6189 0.5798 improving parameter /IntronModel/ass_motif_radius curently set to 1 0-4 /IntronModel/ass_motif_radius: checking values 0 1 2 3 4 bucket 8 6 2 3 5 1 4 7 retrieve accuracy from previous computation bucket 8 6 2 3 5 1 7 4 bucket 8 6 2 3 5 1 7 4 bucket 8 6 2 3 5 4 7 1 values 0 1 2 3 4 targets 0.6273 0.6359 0.6306 0.6280 0.6272 improving parameter /ExonModel/tis_motif_memory curently set to 1 0-3 /ExonModel/tis_motif_memory: checking values 0 1 2 3 bucket 6 8 2 3 5 7 1 4 retrieve accuracy from previous computation bucket 6 8 2 3 5 7 1 4 bucket 8 6 2 3 5 4 1 7 values 0 1 2 3 targets 0.6337 0.6359 0.6146 0.6164 improving parameter /ExonModel/tis_motif_radius curently set to 1 0-3 /ExonModel/tis_motif_radius: checking values 0 1 2 3 bucket 8 6 2 3 5 4 1 7 retrieve accuracy from previous computation bucket 6 8 2 3 5 1 4 7 bucket 8 6 2 3 5 4 1 7 values 0 1 2 3 targets 0.6242 0.6359 0.6278 0.6305 improving parameter /Constant/trans_init_window curently set to 6 0-25 /Constant/trans_init_window: checking values 0 6 12 18 25 bucket 8 6 2 3 5 7 4 1 retrieve accuracy from previous computation bucket 8 2 6 3 5 1 7 4 bucket 8 6 2 3 5 1 4 7 bucket 8 6 2 3 5 1 4 7 values 0 6 12 18 25 targets 0.6296 0.6359 0.6275 0.6272 0.6160 improving parameter /Constant/init_coding_len curently set to 0 0-18 /Constant/init_coding_len: checking values 0 4 9 13 18 retrieve accuracy from previous computation bucket 6 8 2 3 5 4 1 7 bucket 8 6 2 3 5 1 7 4 bucket 8 6 2 3 5 1 4 7 bucket 8 6 2 3 5 7 1 4 values 0 4 9 13 18 targets 0.6359 0.6236 0.6198 0.6148 0.6182 improving parameter /ExonModel/patpseudocount curently set to 0.921875 0.5-5 /ExonModel/patpseudocount: checking values 0.5 1.625 2.75 3.875 5 bucket 8 6 2 3 5 7 4 1 bucket 8 6 2 3 5 1 4 7 bucket 8 6 2 3 5 4 7 1 bucket 8 6 2 3 5 1 7 4 bucket 8 2 6 3 5 7 4 1 values 0.5 1.625 2.75 3.875 5 targets 0.6344 0.6310 0.6283 0.6258 0.6229 improving parameter /ExonModel/etpseudocount curently set to 3 0-10 /ExonModel/etpseudocount: checking values 0 2 5 7 10 bucket 8 6 2 3 5 7 1 4 bucket 8 6 2 3 5 1 4 7 bucket 6 8 2 3 5 7 1 4 bucket 6 8 2 3 5 1 7 4 bucket 8 6 2 3 5 1 4 7 values 0 2 5 7 10 targets 0.6359 0.6359 0.6359 0.6359 0.6359 improving parameter /ExonModel/etorder curently set to 2 0-3 /ExonModel/etorder: checking values 0 1 2 3 bucket 8 6 2 3 5 7 1 4 bucket 6 8 2 3 5 4 1 7 retrieve accuracy from previous computation bucket 8 6 2 3 5 7 4 1 values 0 1 2 3 targets 0.6359 0.6359 0.6359 0.6359 improving parameter /Constant/intterm_coding_len curently set to 0 0-13 /Constant/intterm_coding_len: checking values 0 3 6 9 13 retrieve accuracy from previous computation bucket 8 6 2 3 5 1 4 7 bucket 8 6 2 3 5 7 1 4 bucket 8 6 2 3 5 4 7 1 bucket 8 6 2 3 5 7 1 4 values 0 3 6 9 13 targets 0.6359 0.6307 0.6328 0.6251 0.6135 improving parameter /ExonModel/slope_of_bandwidth curently set to 0.3 0.05-0.6 /ExonModel/slope_of_bandwidth: checking values 0.05 0.1875 0.325 0.4625 0.6 bucket 8 6 2 3 5 4 7 1 found improvement: 0.8624, 0.8432, 0.5742, 0.6681, 0.1585, 0.1443, -1.00, -1.00, optimal target: 0.6371 changing /ExonModel/slope_of_bandwidth to 0.05 /Constant/dss_end 3 /Constant/dss_start 2 /Constant/ass_start 2 /Constant/ass_end 2 /Constant/ass_upwindow_size 30 /IntronModel/d 525 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 6 /Constant/init_coding_len 0 /ExonModel/patpseudocount 0.921875 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 0 /ExonModel/slope_of_bandwidth 0.05 /ExonModel/minwindowcount 15 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 7 /IntronModel/slope_of_bandwidth 0.325 /IntronModel/minwindowcount 6 /IntronModel/asspseudocount 0.01525 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 287.5 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190114_oly_busco_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_1662539526/BUSCO_Olurida_maker_busco_1662539526_parameters.cfg... bucket 8 6 2 3 5 4 1 7 bucket 8 6 2 3 5 1 4 7 bucket 8 6 2 3 5 1 4 7 bucket 6 8 2 3 5 4 7 1 values 0.05 0.1875 0.325 0.4625 0.6 targets 0.6371 0.6365 0.6359 0.6359 0.6360 /ExonModel/slope_of_bandwidth: checking values 0.05 0.084375 0.11875 0.153125 0.1875 retrieve accuracy from previous computation bucket 8 6 2 3 5 7 4 1 bucket 6 8 2 3 5 4 1 7 bucket 8 6 2 3 5 7 1 4 retrieve accuracy from previous computation values 0.05 0.084375 0.11875 0.153125 0.1875 targets 0.6371 0.6371 0.6371 0.6365 0.6365 improving parameter /ExonModel/minwindowcount curently set to 15 1-15 /ExonModel/minwindowcount: checking values 1 4 8 11 15 bucket 8 6 2 3 5 7 1 4 bucket 8 6 2 3 5 1 4 7 bucket 8 2 6 3 5 1 7 4 bucket 8 6 2 3 5 1 4 7 retrieve accuracy from previous computation values 1 4 8 11 15 targets 0.5851 0.6201 0.6265 0.6345 0.6371 improving parameter /IGenicModel/patpseudocount curently set to 5.0 0.5-7 /IGenicModel/patpseudocount: checking values 0.5 2.125 3.75 5.375 7 bucket 8 6 2 3 5 7 4 1 bucket 8 6 2 3 5 1 4 7 bucket 8 6 2 3 5 1 4 7 bucket 8 6 2 3 5 7 1 4 bucket 6 8 2 3 5 4 1 7 values 0.5 2.125 3.75 5.375 7 targets 0.6365 0.6371 0.6371 0.6371 0.6371 improving parameter /IntronModel/patpseudocount curently set to 7 0.5-7 /IntronModel/patpseudocount: checking values 0.5 2.125 3.75 5.375 7 bucket 8 6 2 3 5 1 4 7 bucket 6 8 2 3 5 1 7 4 bucket 8 6 2 3 5 7 1 4 bucket 8 6 2 3 5 4 7 1 retrieve accuracy from previous computation values 0.5 2.125 3.75 5.375 7 targets 0.6287 0.6304 0.6325 0.6340 0.6371 improving parameter /IntronModel/slope_of_bandwidth curently set to 0.325 0.05-0.6 /IntronModel/slope_of_bandwidth: checking values 0.05 0.1875 0.325 0.4625 0.6 bucket 8 6 2 3 5 4 1 7 bucket 8 6 2 3 5 4 1 7 found improvement: 0.8619, 0.8454, 0.5731, 0.6691, 0.1710, 0.1547, -1.00, -1.00, optimal target: 0.6397 changing /IntronModel/slope_of_bandwidth to 0.1875 /Constant/dss_end 3 /Constant/dss_start 2 /Constant/ass_start 2 /Constant/ass_end 2 /Constant/ass_upwindow_size 30 /IntronModel/d 525 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 6 /Constant/init_coding_len 0 /ExonModel/patpseudocount 0.921875 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 0 /ExonModel/slope_of_bandwidth 0.05 /ExonModel/minwindowcount 15 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 7 /IntronModel/slope_of_bandwidth 0.1875 /IntronModel/minwindowcount 6 /IntronModel/asspseudocount 0.01525 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 287.5 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190114_oly_busco_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_1662539526/BUSCO_Olurida_maker_busco_1662539526_parameters.cfg... retrieve accuracy from previous computation bucket 8 6 2 3 5 4 7 1 bucket 8 6 2 3 5 4 7 1 values 0.05 0.1875 0.325 0.4625 0.6 targets 0.6347 0.6397 0.6371 0.6363 0.6365 /IntronModel/slope_of_bandwidth: checking values 0.05 0.11875 0.1875 0.25625 0.325 retrieve accuracy from previous computation bucket 8 6 2 3 5 4 1 7 retrieve accuracy from previous computation bucket 6 8 2 3 5 4 7 1 found improvement: 0.8635, 0.8449, 0.5755, 0.6699, 0.1710, 0.1547, -1.00, -1.00, optimal target: 0.6405 changing /IntronModel/slope_of_bandwidth to 0.25625 /Constant/dss_end 3 /Constant/dss_start 2 /Constant/ass_start 2 /Constant/ass_end 2 /Constant/ass_upwindow_size 30 /IntronModel/d 525 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 6 /Constant/init_coding_len 0 /ExonModel/patpseudocount 0.921875 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 0 /ExonModel/slope_of_bandwidth 0.05 /ExonModel/minwindowcount 15 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 7 /IntronModel/slope_of_bandwidth 0.25625 /IntronModel/minwindowcount 6 /IntronModel/asspseudocount 0.01525 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 287.5 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190114_oly_busco_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_1662539526/BUSCO_Olurida_maker_busco_1662539526_parameters.cfg... retrieve accuracy from previous computation values 0.05 0.11875 0.1875 0.25625 0.325 targets 0.6347 0.6375 0.6397 0.6405 0.6371 /IntronModel/slope_of_bandwidth: checking values 0.1875 0.221875 0.25625 0.290625 0.325 retrieve accuracy from previous computation bucket 6 8 2 5 3 1 4 7 retrieve accuracy from previous computation bucket 8 6 2 3 5 4 1 7 retrieve accuracy from previous computation values 0.1875 0.221875 0.25625 0.290625 0.325 targets 0.6397 0.6397 0.6405 0.6371 0.6371 improving parameter /IntronModel/minwindowcount curently set to 6 1-8 /IntronModel/minwindowcount: checking values 1 2 4 6 8 bucket 8 6 2 3 5 1 7 4 bucket 8 6 2 3 5 4 1 7 bucket 8 6 2 3 5 7 4 1 retrieve accuracy from previous computation bucket 8 6 2 3 5 1 4 7 values 1 2 4 6 8 targets 0.6369 0.6369 0.6369 0.6405 0.6373 improving parameter /IntronModel/asspseudocount curently set to 0.01525 0.0005-0.03 /IntronModel/asspseudocount: checking values 0.0005 0.007875 0.01525 0.022625 0.03 bucket 8 6 2 3 5 1 4 7 bucket 6 8 2 3 5 7 1 4 retrieve accuracy from previous computation bucket 8 2 6 3 5 1 4 7 found improvement: 0.8636, 0.8449, 0.5769, 0.6711, 0.1710, 0.1547, -1.00, -1.00, optimal target: 0.6410 changing /IntronModel/asspseudocount to 0.022625 /Constant/dss_end 3 /Constant/dss_start 2 /Constant/ass_start 2 /Constant/ass_end 2 /Constant/ass_upwindow_size 30 /IntronModel/d 525 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 6 /Constant/init_coding_len 0 /ExonModel/patpseudocount 0.921875 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 0 /ExonModel/slope_of_bandwidth 0.05 /ExonModel/minwindowcount 15 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 7 /IntronModel/slope_of_bandwidth 0.25625 /IntronModel/minwindowcount 6 /IntronModel/asspseudocount 0.022625 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 287.5 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190114_oly_busco_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_1662539526/BUSCO_Olurida_maker_busco_1662539526_parameters.cfg... bucket 8 6 2 3 5 7 1 4 found improvement: 0.8640, 0.8464, 0.5780, 0.6734, 0.1710, 0.1547, -1.00, -1.00, optimal target: 0.6420 changing /IntronModel/asspseudocount to 0.03 /Constant/dss_end 3 /Constant/dss_start 2 /Constant/ass_start 2 /Constant/ass_end 2 /Constant/ass_upwindow_size 30 /IntronModel/d 525 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 6 /Constant/init_coding_len 0 /ExonModel/patpseudocount 0.921875 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 0 /ExonModel/slope_of_bandwidth 0.05 /ExonModel/minwindowcount 15 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 7 /IntronModel/slope_of_bandwidth 0.25625 /IntronModel/minwindowcount 6 /IntronModel/asspseudocount 0.03 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 287.5 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190114_oly_busco_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_1662539526/BUSCO_Olurida_maker_busco_1662539526_parameters.cfg... values 0.0005 0.007875 0.01525 0.022625 0.03 targets 0.6359 0.6405 0.6405 0.6410 0.6420 /IntronModel/asspseudocount: checking values 0.022625 0.02446875 0.0263125 0.02815625 0.03 retrieve accuracy from previous computation bucket 6 2 8 3 5 1 4 7 bucket 6 8 2 3 5 1 4 7 bucket 8 6 2 3 5 4 7 1 retrieve accuracy from previous computation values 0.022625 0.02446875 0.0263125 0.02815625 0.03 targets 0.6410 0.6410 0.6410 0.6420 0.6420 improving parameter /IntronModel/dsspseudocount curently set to 0.0005 0.0002-0.04 /IntronModel/dsspseudocount: checking values 0.0002 0.01015 0.0201 0.03005 0.04 bucket 8 6 2 3 5 7 1 4 bucket 8 6 2 3 5 1 7 4 bucket 8 6 2 3 5 4 1 7 bucket 8 6 2 3 5 1 4 7 bucket 8 6 2 3 5 7 1 4 values 0.0002 0.01015 0.0201 0.03005 0.04 targets 0.6415 0.6353 0.6360 0.6345 0.6345 improving parameter /IntronModel/dssneighborfactor curently set to 0.00173 0.0001-0.01 /IntronModel/dssneighborfactor: checking values 0.0001 0.002575 0.00505 0.007525 0.01 bucket 8 2 6 3 5 1 7 4 bucket 8 6 2 3 5 1 4 7 found improvement: 0.8643, 0.8441, 0.5790, 0.6749, 0.1710, 0.1547, -1.00, -1.00, optimal target: 0.6422 changing /IntronModel/dssneighborfactor to 0.002575 /Constant/dss_end 3 /Constant/dss_start 2 /Constant/ass_start 2 /Constant/ass_end 2 /Constant/ass_upwindow_size 30 /IntronModel/d 525 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 6 /Constant/init_coding_len 0 /ExonModel/patpseudocount 0.921875 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 0 /ExonModel/slope_of_bandwidth 0.05 /ExonModel/minwindowcount 15 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 7 /IntronModel/slope_of_bandwidth 0.25625 /IntronModel/minwindowcount 6 /IntronModel/asspseudocount 0.03 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.002575 /ExonModel/minPatSum 287.5 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190114_oly_busco_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_1662539526/BUSCO_Olurida_maker_busco_1662539526_parameters.cfg... bucket 8 6 2 3 5 1 7 4 bucket 8 6 2 3 5 1 4 7 bucket 8 6 2 3 5 7 1 4 values 0.0001 0.002575 0.00505 0.007525 0.01 targets 0.6342 0.6422 0.6420 0.6410 0.6374 /IntronModel/dssneighborfactor: checking values 0.0001 0.0013375 0.002575 0.0038125 0.00505 retrieve accuracy from previous computation bucket 8 6 2 3 5 1 7 4 retrieve accuracy from previous computation bucket 8 6 2 3 5 1 7 4 found improvement: 0.8643, 0.8441, 0.5811, 0.6737, 0.1710, 0.1547, -1.00, -1.00, optimal target: 0.6424 changing /IntronModel/dssneighborfactor to 0.0038125 /Constant/dss_end 3 /Constant/dss_start 2 /Constant/ass_start 2 /Constant/ass_end 2 /Constant/ass_upwindow_size 30 /IntronModel/d 525 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 6 /Constant/init_coding_len 0 /ExonModel/patpseudocount 0.921875 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 0 /ExonModel/slope_of_bandwidth 0.05 /ExonModel/minwindowcount 15 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 7 /IntronModel/slope_of_bandwidth 0.25625 /IntronModel/minwindowcount 6 /IntronModel/asspseudocount 0.03 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.0038125 /ExonModel/minPatSum 287.5 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190114_oly_busco_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_1662539526/BUSCO_Olurida_maker_busco_1662539526_parameters.cfg... retrieve accuracy from previous computation values 0.0001 0.0013375 0.002575 0.0038125 0.00505 targets 0.6342 0.6407 0.6422 0.6424 0.6420 /IntronModel/dssneighborfactor: checking values 0.002575 0.00319375 0.0038125 0.00443125 0.00505 retrieve accuracy from previous computation bucket 8 6 2 3 5 1 7 4 retrieve accuracy from previous computation bucket 8 6 2 3 5 1 7 4 retrieve accuracy from previous computation values 0.002575 0.00319375 0.0038125 0.00443125 0.00505 targets 0.6422 0.6419 0.6424 0.6420 0.6420 improving parameter /ExonModel/minPatSum curently set to 287.5 100-600 /ExonModel/minPatSum: checking values 100 225 350 475 600 bucket 8 6 2 3 5 1 7 4 bucket 8 6 2 3 5 1 4 7 bucket 8 6 2 3 5 1 7 4 bucket 8 6 2 3 5 1 7 4 bucket 6 8 2 3 5 1 4 7 values 100 225 350 475 600 targets 0.6300 0.6364 0.6399 0.6399 0.6399 improving parameter /Constant/probNinCoding curently set to 0.23 0.15-.25 /Constant/probNinCoding: checking values 0.15 0.175 0.2 0.225 0.25 bucket 8 6 2 3 5 1 7 4 bucket 8 6 2 3 5 7 1 4 bucket 8 6 2 3 5 1 4 7 bucket 8 6 2 3 5 1 4 7 bucket 8 6 2 3 5 1 4 7 values 0.15 0.175 0.2 0.225 0.25 targets 0.6385 0.6385 0.6385 0.6423 0.6415 improving parameter /Constant/decomp_num_steps curently set to 1 1-5 /Constant/decomp_num_steps: checking values 1 2 3 4 5 retrieve accuracy from previous computation bucket 8 6 2 3 5 1 7 4 bucket 8 6 2 3 5 1 7 4 bucket 8 6 2 3 5 1 7 4 bucket 6 8 2 3 5 4 1 7 values 1 2 3 4 5 targets 0.6424 0.6168 0.6054 0.6083 0.6065 improving parameter /Constant/dss_end curently set to 3 1-4 /Constant/dss_end: checking values 1 2 3 4 bucket 8 6 2 3 5 7 4 1 bucket 6 2 8 3 5 1 4 7 retrieve accuracy from previous computation bucket 8 2 6 3 5 1 7 4 values 1 2 3 4 targets 0.5853 0.5950 0.6424 0.6361 improving parameter /Constant/dss_start curently set to 2 1-3 /Constant/dss_start: checking values 1 2 3 bucket 8 6 2 3 5 1 4 7 retrieve accuracy from previous computation bucket 8 6 2 3 5 1 4 7 values 1 2 3 targets 0.6079 0.6424 0.6135 improving parameter /Constant/ass_start curently set to 2 1-3 /Constant/ass_start: checking values 1 2 3 bucket 8 6 2 3 5 4 7 1 retrieve accuracy from previous computation bucket 8 6 2 3 5 1 4 7 values 1 2 3 targets 0.6291 0.6424 0.6300 improving parameter /Constant/ass_end curently set to 2 0-4 /Constant/ass_end: checking values 0 1 2 3 4 bucket 8 6 2 3 5 1 4 7 bucket 8 6 2 3 5 1 7 4 retrieve accuracy from previous computation bucket 8 6 2 3 5 1 7 4 bucket 8 6 2 3 5 7 4 1 values 0 1 2 3 4 targets 0.6346 0.6331 0.6424 0.6093 0.5846 improving parameter /Constant/ass_upwindow_size curently set to 30 1-50 /Constant/ass_upwindow_size: checking values 1 13 25 37 50 bucket 6 8 2 3 5 4 7 1 bucket 8 6 2 3 5 1 7 4 bucket 8 6 2 3 5 7 1 4 bucket 6 8 2 3 5 1 4 7 bucket 8 6 2 3 5 7 4 1 values 1 13 25 37 50 targets 0.5583 0.6270 0.6350 0.6296 0.6369 improving parameter /IntronModel/d curently set to 525 100-950 /IntronModel/d: checking values 100 312 525 737 950 bucket 8 6 2 3 5 7 4 1 bucket 8 6 2 3 5 7 4 1 retrieve accuracy from previous computation bucket 8 6 2 3 5 1 4 7 bucket 8 6 2 3 5 1 7 4 found improvement: 0.8634, 0.8453, 0.5820, 0.6768, 0.1710, 0.1547, -1.00, -1.00, optimal target: 0.6432 changing /IntronModel/d to 950 /Constant/dss_end 3 /Constant/dss_start 2 /Constant/ass_start 2 /Constant/ass_end 2 /Constant/ass_upwindow_size 30 /IntronModel/d 950 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 6 /Constant/init_coding_len 0 /ExonModel/patpseudocount 0.921875 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 0 /ExonModel/slope_of_bandwidth 0.05 /ExonModel/minwindowcount 15 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 7 /IntronModel/slope_of_bandwidth 0.25625 /IntronModel/minwindowcount 6 /IntronModel/asspseudocount 0.03 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.0038125 /ExonModel/minPatSum 287.5 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190114_oly_busco_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_1662539526/BUSCO_Olurida_maker_busco_1662539526_parameters.cfg... values 100 312 525 737 950 targets 0.6301 0.6380 0.6424 0.6407 0.6432 /IntronModel/d: checking values 738 791 844 897 950 bucket 8 6 2 5 3 1 7 4 bucket 8 6 2 3 5 1 7 4 bucket 8 6 2 3 5 7 1 4 bucket 8 6 2 3 5 1 4 7 retrieve accuracy from previous computation values 738 791 844 897 950 targets 0.6407 0.6410 0.6426 0.6426 0.6432 improving parameter /IntronModel/ass_motif_memory curently set to 1 0-3 /IntronModel/ass_motif_memory: checking values 0 1 2 3 bucket 8 6 2 3 5 1 7 4 retrieve accuracy from previous computation bucket 8 6 2 3 5 1 4 7 bucket 6 8 2 3 5 7 1 4 values 0 1 2 3 targets 0.6256 0.6432 0.6205 0.5821 improving parameter /IntronModel/ass_motif_radius curently set to 1 0-4 /IntronModel/ass_motif_radius: checking values 0 1 2 3 4 bucket 8 6 2 3 5 7 4 1 retrieve accuracy from previous computation bucket 8 6 2 3 5 7 1 4 bucket 8 2 6 3 5 1 7 4 bucket 8 6 2 3 5 1 7 4 values 0 1 2 3 4 targets 0.6301 0.6432 0.6376 0.6294 0.6259 improving parameter /ExonModel/tis_motif_memory curently set to 1 0-3 /ExonModel/tis_motif_memory: checking values 0 1 2 3 bucket 8 6 2 3 5 1 7 4 retrieve accuracy from previous computation bucket 8 6 2 3 5 1 7 4 bucket 8 2 6 3 5 1 4 7 values 0 1 2 3 targets 0.6415 0.6432 0.6262 0.6221 improving parameter /ExonModel/tis_motif_radius curently set to 1 0-3 /ExonModel/tis_motif_radius: checking values 0 1 2 3 bucket 8 6 2 3 5 1 7 4 retrieve accuracy from previous computation bucket 8 6 2 3 5 7 1 4 bucket 8 6 2 3 5 1 7 4 values 0 1 2 3 targets 0.6322 0.6432 0.6424 0.6380 improving parameter /Constant/trans_init_window curently set to 6 0-25 /Constant/trans_init_window: checking values 0 6 12 18 25 bucket 8 6 2 3 5 1 4 7 retrieve accuracy from previous computation bucket 8 6 2 3 5 1 7 4 bucket 8 6 2 3 5 1 7 4 bucket 8 6 2 3 5 1 7 4 values 0 6 12 18 25 targets 0.6380 0.6432 0.6328 0.6376 0.6255 improving parameter /Constant/init_coding_len curently set to 0 0-18 /Constant/init_coding_len: checking values 0 4 9 13 18 retrieve accuracy from previous computation bucket 6 8 2 3 5 1 4 7 bucket 8 6 2 3 5 1 7 4 bucket 8 6 2 3 5 1 7 4 bucket 8 6 2 3 5 1 7 4 values 0 4 9 13 18 targets 0.6432 0.6299 0.6230 0.6196 0.6226 improving parameter /ExonModel/patpseudocount curently set to 0.921875 0.5-5 /ExonModel/patpseudocount: checking values 0.5 1.625 2.75 3.875 5 bucket 8 6 2 3 5 1 7 4 bucket 8 6 2 3 5 1 7 4 bucket 8 6 2 3 5 1 4 7 bucket 8 6 2 3 5 1 7 4 bucket 8 6 2 3 5 1 7 4 values 0.5 1.625 2.75 3.875 5 targets 0.6404 0.6381 0.6312 0.6299 0.6275 improving parameter /ExonModel/etpseudocount curently set to 3 0-10 /ExonModel/etpseudocount: checking values 0 2 5 7 10 bucket 8 6 2 3 5 1 4 7 bucket 8 6 2 3 5 1 7 4 bucket 8 6 2 3 5 1 4 7 bucket 8 6 2 3 5 7 1 4 bucket 8 6 2 3 5 7 1 4 values 0 2 5 7 10 targets 0.6432 0.6432 0.6432 0.6432 0.6432 improving parameter /ExonModel/etorder curently set to 2 0-3 /ExonModel/etorder: checking values 0 1 2 3 bucket 8 6 2 3 5 1 7 4 bucket 8 6 2 3 5 1 7 4 retrieve accuracy from previous computation bucket 8 6 2 3 5 1 4 7 values 0 1 2 3 targets 0.6432 0.6432 0.6432 0.6432 improving parameter /Constant/intterm_coding_len curently set to 0 0-13 /Constant/intterm_coding_len: checking values 0 3 6 9 13 retrieve accuracy from previous computation bucket 8 6 2 3 5 7 4 1 bucket 8 6 2 3 5 7 4 1 bucket 8 6 2 3 5 1 4 7 bucket 8 6 2 3 5 7 1 4 values 0 3 6 9 13 targets 0.6432 0.6292 0.6275 0.6218 0.6140 improving parameter /ExonModel/slope_of_bandwidth curently set to 0.05 0.05-0.6 /ExonModel/slope_of_bandwidth: checking values 0.05 0.1875 0.325 0.4625 0.6 retrieve accuracy from previous computation bucket 8 6 2 3 5 1 4 7 bucket 6 8 2 3 5 1 7 4 bucket 8 6 2 3 5 7 1 4 bucket 8 2 6 3 5 1 7 4 values 0.05 0.1875 0.325 0.4625 0.6 targets 0.6432 0.6425 0.6425 0.6425 0.6430 improving parameter /ExonModel/minwindowcount curently set to 15 1-15 /ExonModel/minwindowcount: checking values 1 4 8 11 15 bucket 8 6 2 3 5 1 7 4 bucket 8 6 2 3 5 7 1 4 bucket 8 6 2 3 5 1 7 4 bucket 8 6 2 3 5 7 4 1 retrieve accuracy from previous computation values 1 4 8 11 15 targets 0.5847 0.6290 0.6362 0.6430 0.6432 improving parameter /IGenicModel/patpseudocount curently set to 5.0 0.5-7 /IGenicModel/patpseudocount: checking values 0.5 2.125 3.75 5.375 7 bucket 8 6 2 3 5 1 4 7 bucket 8 6 2 3 5 1 4 7 bucket 8 6 2 3 5 4 7 1 bucket 8 6 2 3 5 7 1 4 bucket 8 6 2 3 5 4 1 7 values 0.5 2.125 3.75 5.375 7 targets 0.6425 0.6432 0.6432 0.6432 0.6432 improving parameter /IntronModel/patpseudocount curently set to 7 0.5-7 /IntronModel/patpseudocount: checking values 0.5 2.125 3.75 5.375 7 bucket 6 8 2 3 5 1 7 4 bucket 8 6 2 3 5 1 4 7 bucket 8 6 2 3 5 1 4 7 bucket 8 6 2 3 5 1 4 7 retrieve accuracy from previous computation values 0.5 2.125 3.75 5.375 7 targets 0.6338 0.6346 0.6368 0.6428 0.6432 improving parameter /IntronModel/slope_of_bandwidth curently set to 0.25625 0.05-0.6 /IntronModel/slope_of_bandwidth: checking values 0.05 0.1875 0.325 0.4625 0.6 bucket 8 6 2 3 5 7 1 4 bucket 8 6 2 3 5 1 7 4 bucket 8 6 2 3 5 7 1 4 bucket 6 8 2 3 5 1 7 4 bucket 8 6 2 3 5 7 1 4 values 0.05 0.1875 0.325 0.4625 0.6 targets 0.6389 0.6432 0.6404 0.6397 0.6399 improving parameter /IntronModel/minwindowcount curently set to 6 1-8 /IntronModel/minwindowcount: checking values 1 2 4 6 8 bucket 8 2 6 3 5 1 7 4 bucket 8 6 2 3 5 1 4 7 bucket 8 6 2 3 5 1 4 7 retrieve accuracy from previous computation bucket 8 6 2 3 5 7 1 4 values 1 2 4 6 8 targets 0.6396 0.6396 0.6399 0.6432 0.6404 improving parameter /IntronModel/asspseudocount curently set to 0.03 0.0005-0.03 /IntronModel/asspseudocount: checking values 0.0005 0.007875 0.01525 0.022625 0.03 bucket 8 6 2 3 5 1 7 4 bucket 8 6 2 3 5 1 7 4 bucket 8 6 2 3 5 1 7 4 bucket 8 6 2 3 5 1 7 4 retrieve accuracy from previous computation values 0.0005 0.007875 0.01525 0.022625 0.03 targets 0.6367 0.6417 0.6417 0.6432 0.6432 improving parameter /IntronModel/dsspseudocount curently set to 0.0005 0.0002-0.04 /IntronModel/dsspseudocount: checking values 0.0002 0.01015 0.0201 0.03005 0.04 bucket 8 6 2 3 5 7 1 4 bucket 8 6 2 3 5 7 1 4 bucket 8 6 2 3 5 1 7 4 bucket 6 8 2 3 5 1 4 7 bucket 8 6 2 3 5 1 7 4 values 0.0002 0.01015 0.0201 0.03005 0.04 targets 0.6432 0.6374 0.6367 0.6358 0.6365 improving parameter /IntronModel/dssneighborfactor curently set to 0.0038125 0.0001-0.01 /IntronModel/dssneighborfactor: checking values 0.0001 0.002575 0.00505 0.007525 0.01 bucket 8 6 2 3 5 1 4 7 bucket 8 6 2 3 5 1 4 7 bucket 8 6 2 3 5 1 4 7 bucket 8 6 2 3 5 1 7 4 bucket 8 6 2 3 5 7 1 4 values 0.0001 0.002575 0.00505 0.007525 0.01 targets 0.6336 0.6422 0.6417 0.6420 0.6374 improving parameter /ExonModel/minPatSum curently set to 287.5 100-600 /ExonModel/minPatSum: checking values 100 225 350 475 600 bucket 8 6 2 3 5 1 4 7 bucket 8 6 2 3 5 1 4 7 bucket 8 6 2 3 5 1 7 4 bucket 8 6 2 3 5 1 4 7 bucket 8 6 2 3 5 4 1 7 values 100 225 350 475 600 targets 0.6306 0.6424 0.6402 0.6402 0.6402 improving parameter /Constant/probNinCoding curently set to 0.23 0.15-.25 /Constant/probNinCoding: checking values 0.15 0.175 0.2 0.225 0.25 bucket 8 6 2 3 5 7 1 4 bucket 8 6 2 3 5 1 4 7 bucket 8 6 2 3 5 7 1 4 bucket 8 6 2 3 5 1 7 4 bucket 8 6 2 3 5 1 7 4 values 0.15 0.175 0.2 0.225 0.25 targets 0.6392 0.6392 0.6392 0.6431 0.6423 improving parameter /Constant/decomp_num_steps curently set to 1 1-5 /Constant/decomp_num_steps: checking values 1 2 3 4 5 retrieve accuracy from previous computation bucket 8 6 2 3 5 1 4 7 bucket 6 8 2 3 5 1 4 7 bucket 6 8 2 3 5 1 4 7 bucket 8 6 2 3 5 1 7 4 values 1 2 3 4 5 targets 0.6432 0.6144 0.6037 0.6109 0.6079 improving parameter /Constant/dss_end curently set to 3 1-4 /Constant/dss_end: checking values 1 2 3 4 bucket 8 6 2 3 5 1 4 7 bucket 8 6 2 3 5 1 7 4 retrieve accuracy from previous computation bucket 8 6 2 3 5 1 7 4 values 1 2 3 4 targets 0.5885 0.5962 0.6432 0.6369 improving parameter /Constant/dss_start curently set to 2 1-3 /Constant/dss_start: checking values 1 2 3 bucket 8 6 2 3 5 1 4 7 retrieve accuracy from previous computation bucket 8 6 2 3 5 7 1 4 values 1 2 3 targets 0.6071 0.6432 0.6112 improving parameter /Constant/ass_start curently set to 2 1-3 /Constant/ass_start: checking values 1 2 3 bucket 8 6 2 3 5 1 7 4 retrieve accuracy from previous computation bucket 6 8 2 3 5 1 7 4 values 1 2 3 targets 0.6225 0.6432 0.6265 improving parameter /Constant/ass_end curently set to 2 0-4 /Constant/ass_end: checking values 0 1 2 3 4 bucket 8 6 2 3 5 7 1 4 bucket 8 6 2 3 5 7 4 1 retrieve accuracy from previous computation bucket 8 6 2 3 5 7 1 4 bucket 8 6 2 3 5 4 1 7 values 0 1 2 3 4 targets 0.6305 0.6397 0.6432 0.6021 0.5910 improving parameter /Constant/ass_upwindow_size curently set to 30 1-50 /Constant/ass_upwindow_size: checking values 1 13 25 37 50 bucket 8 6 2 3 5 1 7 4 bucket 6 8 2 3 5 1 4 7 bucket 8 6 2 3 5 7 1 4 bucket 8 6 2 3 5 7 1 4 bucket 8 6 2 3 5 1 7 4 values 1 13 25 37 50 targets 0.5585 0.6273 0.6360 0.6321 0.6373 improving parameter /IntronModel/d curently set to 950 100-950 /IntronModel/d: checking values 100 312 525 737 950 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 100 312 525 737 950 targets 0.6301 0.6380 0.6424 0.6407 0.6432 improving parameter /IntronModel/ass_motif_memory curently set to 1 0-3 /IntronModel/ass_motif_memory: checking values 0 1 2 3 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0 1 2 3 targets 0.6256 0.6432 0.6205 0.5821 improving parameter /IntronModel/ass_motif_radius curently set to 1 0-4 /IntronModel/ass_motif_radius: checking values 0 1 2 3 4 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0 1 2 3 4 targets 0.6301 0.6432 0.6376 0.6294 0.6259 improving parameter /ExonModel/tis_motif_memory curently set to 1 0-3 /ExonModel/tis_motif_memory: checking values 0 1 2 3 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0 1 2 3 targets 0.6415 0.6432 0.6262 0.6221 improving parameter /ExonModel/tis_motif_radius curently set to 1 0-3 /ExonModel/tis_motif_radius: checking values 0 1 2 3 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0 1 2 3 targets 0.6322 0.6432 0.6424 0.6380 improving parameter /Constant/trans_init_window curently set to 6 0-25 /Constant/trans_init_window: checking values 0 6 12 18 25 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0 6 12 18 25 targets 0.6380 0.6432 0.6328 0.6376 0.6255 improving parameter /Constant/init_coding_len curently set to 0 0-18 /Constant/init_coding_len: checking values 0 4 9 13 18 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0 4 9 13 18 targets 0.6432 0.6299 0.6230 0.6196 0.6226 improving parameter /ExonModel/patpseudocount curently set to 0.921875 0.5-5 /ExonModel/patpseudocount: checking values 0.5 1.625 2.75 3.875 5 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0.5 1.625 2.75 3.875 5 targets 0.6404 0.6381 0.6312 0.6299 0.6275 improving parameter /ExonModel/etpseudocount curently set to 3 0-10 /ExonModel/etpseudocount: checking values 0 2 5 7 10 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0 2 5 7 10 targets 0.6432 0.6432 0.6432 0.6432 0.6432 improving parameter /ExonModel/etorder curently set to 2 0-3 /ExonModel/etorder: checking values 0 1 2 3 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0 1 2 3 targets 0.6432 0.6432 0.6432 0.6432 improving parameter /Constant/intterm_coding_len curently set to 0 0-13 /Constant/intterm_coding_len: checking values 0 3 6 9 13 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0 3 6 9 13 targets 0.6432 0.6292 0.6275 0.6218 0.6140 improving parameter /ExonModel/slope_of_bandwidth curently set to 0.05 0.05-0.6 /ExonModel/slope_of_bandwidth: checking values 0.05 0.1875 0.325 0.4625 0.6 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0.05 0.1875 0.325 0.4625 0.6 targets 0.6432 0.6425 0.6425 0.6425 0.6430 improving parameter /ExonModel/minwindowcount curently set to 15 1-15 /ExonModel/minwindowcount: checking values 1 4 8 11 15 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 1 4 8 11 15 targets 0.5847 0.6290 0.6362 0.6430 0.6432 improving parameter /IGenicModel/patpseudocount curently set to 5.0 0.5-7 /IGenicModel/patpseudocount: checking values 0.5 2.125 3.75 5.375 7 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0.5 2.125 3.75 5.375 7 targets 0.6425 0.6432 0.6432 0.6432 0.6432 improving parameter /IntronModel/patpseudocount curently set to 7 0.5-7 /IntronModel/patpseudocount: checking values 0.5 2.125 3.75 5.375 7 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0.5 2.125 3.75 5.375 7 targets 0.6338 0.6346 0.6368 0.6428 0.6432 improving parameter /IntronModel/slope_of_bandwidth curently set to 0.25625 0.05-0.6 /IntronModel/slope_of_bandwidth: checking values 0.05 0.1875 0.325 0.4625 0.6 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0.05 0.1875 0.325 0.4625 0.6 targets 0.6389 0.6432 0.6404 0.6397 0.6399 improving parameter /IntronModel/minwindowcount curently set to 6 1-8 /IntronModel/minwindowcount: checking values 1 2 4 6 8 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 1 2 4 6 8 targets 0.6396 0.6396 0.6399 0.6432 0.6404 improving parameter /IntronModel/asspseudocount curently set to 0.03 0.0005-0.03 /IntronModel/asspseudocount: checking values 0.0005 0.007875 0.01525 0.022625 0.03 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0.0005 0.007875 0.01525 0.022625 0.03 targets 0.6367 0.6417 0.6417 0.6432 0.6432 improving parameter /IntronModel/dsspseudocount curently set to 0.0005 0.0002-0.04 /IntronModel/dsspseudocount: checking values 0.0002 0.01015 0.0201 0.03005 0.04 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0.0002 0.01015 0.0201 0.03005 0.04 targets 0.6432 0.6374 0.6367 0.6358 0.6365 improving parameter /IntronModel/dssneighborfactor curently set to 0.0038125 0.0001-0.01 /IntronModel/dssneighborfactor: checking values 0.0001 0.002575 0.00505 0.007525 0.01 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0.0001 0.002575 0.00505 0.007525 0.01 targets 0.6336 0.6422 0.6417 0.6420 0.6374 improving parameter /ExonModel/minPatSum curently set to 287.5 100-600 /ExonModel/minPatSum: checking values 100 225 350 475 600 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 100 225 350 475 600 targets 0.6306 0.6424 0.6402 0.6402 0.6402 improving parameter /Constant/probNinCoding curently set to 0.23 0.15-.25 /Constant/probNinCoding: checking values 0.15 0.175 0.2 0.225 0.25 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0.15 0.175 0.2 0.225 0.25 targets 0.6392 0.6392 0.6392 0.6431 0.6423 improving parameter /Constant/decomp_num_steps curently set to 1 1-5 /Constant/decomp_num_steps: checking values 1 2 3 4 5 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 1 2 3 4 5 targets 0.6432 0.6144 0.6037 0.6109 0.6079 improving parameter /Constant/dss_end curently set to 3 1-4 /Constant/dss_end: checking values 1 2 3 4 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 1 2 3 4 targets 0.5885 0.5962 0.6432 0.6369 improving parameter /Constant/dss_start curently set to 2 1-3 /Constant/dss_start: checking values 1 2 3 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 1 2 3 targets 0.6071 0.6432 0.6112 improving parameter /Constant/ass_start curently set to 2 1-3 /Constant/ass_start: checking values 1 2 3 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 1 2 3 targets 0.6225 0.6432 0.6265 improving parameter /Constant/ass_end curently set to 2 0-4 /Constant/ass_end: checking values 0 1 2 3 4 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0 1 2 3 4 targets 0.6305 0.6397 0.6432 0.6021 0.5910 improving parameter /Constant/ass_upwindow_size curently set to 30 1-50 /Constant/ass_upwindow_size: checking values 1 13 25 37 50 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 1 13 25 37 50 targets 0.5585 0.6273 0.6360 0.6321 0.6373 improving parameter /IntronModel/d curently set to 950 100-950 /IntronModel/d: checking values 100 312 525 737 950 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 100 312 525 737 950 targets 0.6301 0.6380 0.6424 0.6407 0.6432 improving parameter /IntronModel/ass_motif_memory curently set to 1 0-3 /IntronModel/ass_motif_memory: checking values 0 1 2 3 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0 1 2 3 targets 0.6256 0.6432 0.6205 0.5821 improving parameter /IntronModel/ass_motif_radius curently set to 1 0-4 /IntronModel/ass_motif_radius: checking values 0 1 2 3 4 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0 1 2 3 4 targets 0.6301 0.6432 0.6376 0.6294 0.6259 improving parameter /ExonModel/tis_motif_memory curently set to 1 0-3 /ExonModel/tis_motif_memory: checking values 0 1 2 3 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0 1 2 3 targets 0.6415 0.6432 0.6262 0.6221 improving parameter /ExonModel/tis_motif_radius curently set to 1 0-3 /ExonModel/tis_motif_radius: checking values 0 1 2 3 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0 1 2 3 targets 0.6322 0.6432 0.6424 0.6380 improving parameter /Constant/trans_init_window curently set to 6 0-25 /Constant/trans_init_window: checking values 0 6 12 18 25 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0 6 12 18 25 targets 0.6380 0.6432 0.6328 0.6376 0.6255 improving parameter /Constant/init_coding_len curently set to 0 0-18 /Constant/init_coding_len: checking values 0 4 9 13 18 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0 4 9 13 18 targets 0.6432 0.6299 0.6230 0.6196 0.6226 improving parameter /ExonModel/patpseudocount curently set to 0.921875 0.5-5 /ExonModel/patpseudocount: checking values 0.5 1.625 2.75 3.875 5 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0.5 1.625 2.75 3.875 5 targets 0.6404 0.6381 0.6312 0.6299 0.6275 improving parameter /ExonModel/etpseudocount curently set to 3 0-10 /ExonModel/etpseudocount: checking values 0 2 5 7 10 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0 2 5 7 10 targets 0.6432 0.6432 0.6432 0.6432 0.6432 improving parameter /ExonModel/etorder curently set to 2 0-3 /ExonModel/etorder: checking values 0 1 2 3 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0 1 2 3 targets 0.6432 0.6432 0.6432 0.6432 improving parameter /Constant/intterm_coding_len curently set to 0 0-13 /Constant/intterm_coding_len: checking values 0 3 6 9 13 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0 3 6 9 13 targets 0.6432 0.6292 0.6275 0.6218 0.6140 improving parameter /ExonModel/slope_of_bandwidth curently set to 0.05 0.05-0.6 /ExonModel/slope_of_bandwidth: checking values 0.05 0.1875 0.325 0.4625 0.6 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0.05 0.1875 0.325 0.4625 0.6 targets 0.6432 0.6425 0.6425 0.6425 0.6430 improving parameter /ExonModel/minwindowcount curently set to 15 1-15 /ExonModel/minwindowcount: checking values 1 4 8 11 15 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 1 4 8 11 15 targets 0.5847 0.6290 0.6362 0.6430 0.6432 improving parameter /IGenicModel/patpseudocount curently set to 5.0 0.5-7 /IGenicModel/patpseudocount: checking values 0.5 2.125 3.75 5.375 7 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0.5 2.125 3.75 5.375 7 targets 0.6425 0.6432 0.6432 0.6432 0.6432 improving parameter /IntronModel/patpseudocount curently set to 7 0.5-7 /IntronModel/patpseudocount: checking values 0.5 2.125 3.75 5.375 7 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0.5 2.125 3.75 5.375 7 targets 0.6338 0.6346 0.6368 0.6428 0.6432 improving parameter /IntronModel/slope_of_bandwidth curently set to 0.25625 0.05-0.6 /IntronModel/slope_of_bandwidth: checking values 0.05 0.1875 0.325 0.4625 0.6 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0.05 0.1875 0.325 0.4625 0.6 targets 0.6389 0.6432 0.6404 0.6397 0.6399 improving parameter /IntronModel/minwindowcount curently set to 6 1-8 /IntronModel/minwindowcount: checking values 1 2 4 6 8 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 1 2 4 6 8 targets 0.6396 0.6396 0.6399 0.6432 0.6404 improving parameter /IntronModel/asspseudocount curently set to 0.03 0.0005-0.03 /IntronModel/asspseudocount: checking values 0.0005 0.007875 0.01525 0.022625 0.03 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0.0005 0.007875 0.01525 0.022625 0.03 targets 0.6367 0.6417 0.6417 0.6432 0.6432 improving parameter /IntronModel/dsspseudocount curently set to 0.0005 0.0002-0.04 /IntronModel/dsspseudocount: checking values 0.0002 0.01015 0.0201 0.03005 0.04 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0.0002 0.01015 0.0201 0.03005 0.04 targets 0.6432 0.6374 0.6367 0.6358 0.6365 improving parameter /IntronModel/dssneighborfactor curently set to 0.0038125 0.0001-0.01 /IntronModel/dssneighborfactor: checking values 0.0001 0.002575 0.00505 0.007525 0.01 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0.0001 0.002575 0.00505 0.007525 0.01 targets 0.6336 0.6422 0.6417 0.6420 0.6374 improving parameter /ExonModel/minPatSum curently set to 287.5 100-600 /ExonModel/minPatSum: checking values 100 225 350 475 600 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 100 225 350 475 600 targets 0.6306 0.6424 0.6402 0.6402 0.6402 improving parameter /Constant/probNinCoding curently set to 0.23 0.15-.25 /Constant/probNinCoding: checking values 0.15 0.175 0.2 0.225 0.25 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0.15 0.175 0.2 0.225 0.25 targets 0.6392 0.6392 0.6392 0.6431 0.6423 improving parameter /Constant/decomp_num_steps curently set to 1 1-5 /Constant/decomp_num_steps: checking values 1 2 3 4 5 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 1 2 3 4 5 targets 0.6432 0.6144 0.6037 0.6109 0.6079 Making final training with the optimized parameters. etraining --species=BUSCO_Olurida_maker_busco_1662539526 --AUGUSTUS_CONFIG_PATH=/gscratch/scrubbed/samwhite/outputs/20190114_oly_busco_augustus/augustus/config/ --/augustus/verbosity=0 --/ExonModel/verbosity=0 --/IGenicModel/verbosity=0 --/IntronModel/verbosity=0 --/UtrModel/verbosity=0 --/genbank/verbosity=0 tmp_opt_BUSCO_Olurida_maker_busco_1662539526/curtrain # Read in 81 genbank sequences. Quantiles of the GC contents in the training set: 0% 0.33 5% 0.339 10% 0.341 15% 0.345 20% 0.346 25% 0.347 30% 0.349 35% 0.35 40% 0.352 45% 0.355 50% 0.357 55% 0.359 60% 0.361 65% 0.362 70% 0.364 75% 0.365 80% 0.367 85% 0.373 90% 0.379 95% 0.387 100% 0.401 HMM-training the parameters... i= 0 bc= (0.237, 0.263, 0.263, 0.237) ** building model for exons *EXON* gene g1.t1 transcr. 1 in sequence Contig86070:2449-10528_1-8054: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig23677:1491-6048_236-4557: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig26838:3984-16267_1-11974: Initial exon does not begin with start codon but with cct gene g1.t1 transcr. 1 in sequence Contig16168:28324-43537_2795-12993: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig38493:2033-6014_4-3981: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig24838:4946-14128_1-9153: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig29164:14271-24776_1-10505: Initial exon does not begin with start codon but with gtg gene g1.t1 transcr. 1 in sequence Contig28832:0-11387_1-11090: coding length not a multiple of 3. Skipping... start codon frequencies: ATG(73) # admissible start codons and their probabilities: ATG(1), CTG(0), TTG(0) number of bases in the reading frames: 25699 25701 25714 --- frame = 0 --- minPatSum = 287 --- frame = 1 --- minPatSum = 287 --- frame = 2 --- minPatSum = 287 --- initial frame = 0 --- minPatSum = 287 --- initial frame = 1 --- minPatSum = 287 --- initial frame = 2 --- minPatSum = 287 --- internal exon terminal frame = 0 --- minPatSum = 287 --- internal exon terminal frame = 1 --- minPatSum = 287 --- internal exon terminal frame = 2 --- minPatSum = 287 single, initial, internal, terminal mean exon lengths : 1187 101 113 166 single exon : 7 initial exon 0 : 21 initial exon 1 : 22 initial exon 2 : 23 internal exon 0 : 199 internal exon 1 : 129 internal exon 2 : 138 terminal exon : 68 Frequency of stop codons: tag: 14 (0.187) taa: 22 (0.293) tga: 39 (0.52) end *EXON* Storing parameters to file... Writing exon model parameters [1] to file /gscratch/scrubbed/samwhite/outputs/20190114_oly_busco_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_1662539526/BUSCO_Olurida_maker_busco_1662539526_exon_probs.pbl. Warning: Block unknown_B is not significant enough, removed from profile. Warning: Block unknown_J is not significant enough, removed from profile. examining piece 1..5442 (5442 bp) Warning: Block unknown_B is not significant enough, removed from profile. Warning: Block unknown_D is not significant enough, removed from profile. examining piece 1..4221 (4221 bp) Warning: Block unknown_K is not significant enough, removed from profile. viterbi algorithm progress: [%]: viterbi algorithm progress: [%]: ..Warning: Block unknown_E is not significant enough, removed from profile. Warning: Block unknown_G is not significant enough, removed from profile. Warning: Block unknown_A is not significant enough, removed from profile. examining piece 1..3222 (3222 bp) Warning: Block unknown_E is not significant enough, removed from profile. viterbi algorithm progress: [%]: .examining piece 1..2053 (2053 bp) viterbi algorithm progress: [%]: Warning: Block unknown_G is not significant enough, removed from profile. .examining piece 1..7673 (7673 bp) .examining piece 1..3259 (3259 bp) .viterbi algorithm progress: [%]: .viterbi algorithm progress: [%]: .Warning: Block unknown_D is not significant enough, removed from profile. .Warning: Block unknown_G is not significant enough, removed from profile. Warning: Block unknown_M is not significant enough, removed from profile. Warning: Block unknown_A is not significant enough, removed from profile. .....examining piece 1349..7962 (6614 bp) examining piece 1..5494 (5494 bp) ...Warning: Block unknown_B is not significant enough, removed from profile. Warning: Block unknown_E is not significant enough, removed from profile. Warning: Block unknown_F is not significant enough, removed from profile. examining piece 1..2731 (2731 bp) ..Warning: Block unknown_I is not significant enough, removed from profile. ..Warning: Block unknown_K is not significant enough, removed from profile. Warning: Block unknown_L is not significant enough, removed from profile. Warning: Block unknown_L is not significant enough, removed from profile. .10viterbi algorithm progress: [%]: ......examining piece .1..3707 (3707 bp) ..examining piece 1..3013 (3013 bp) ..10viterbi algorithm progress: [%]: viterbi algorithm progress: [%]: ........examining piece 1318..7437 (6120 bp) ..Warning: Block unknown_L is not significant enough, removed from profile. examining piece 1..3260 (3260 bp) Warning: Block unknown_M is not significant enough, removed from profile. .Warning: Block unknown_D is not significant enough, removed from profile. viterbi algorithm progress: [%]: ...examining piece 1509..9758 (8250 bp) viterbi algorithm progress: [%]: .20.viterbi algorithm progress: [%]: ...10...viterbi algorithm progress: [%]: ....examining piece 764..7532 (6769 bp) ..........viterbi algorithm progress: [%]: .examining piece .1..3572 (3572 bp) .Warning: Block unknown_D is not significant enough, removed from profile. ...20.viterbi algorithm progress: [%]: ......viterbi algorithm progress: [%]: ...30...10......Warning: Block unknown_D is not significant enough, removed from profile. .....Warning: Block unknown_H is not significant enough, removed from profile. Warning: Block unknown_I is not significant enough, removed from profile. ...examining piece 1..3658 (3658 bp) ..examining piece 1..2983 (2983 bp) ..Warning: Block unknown_A is not significant enough, removed from profile. viterbi algorithm progress: [%]: ..20.viterbi algorithm progress: [%]: ........Warning: Block unknown_L is not significant enough, removed from profile. ..10..examining piece 1942..10613 (8672 bp) .Warning: Block unknown_O is not significant enough, removed from profile. ...examining piece 1..1438 (1438 bp) .....viterbi algorithm progress: [%]: .examining piece 1..6736 (6736 bp) ....viterbi algorithm progress: [%]: .Warning: Block unknown_H is not significant enough, removed from profile. ...40..10...viterbi algorithm progress: [%]: .examining piece 1..2752 (2752 bp) ....Warning: Block unknown_P is not significant enough, removed from profile. ..30Warning: Block unknown_T is not significant enough, removed from profile. ..10Warning: Block unknown_W is not significant enough, removed from profile. Warning: Block unknown_X is not significant enough, removed from profile. ..........examining piece 1..5338 (5338 bp) ..examining piece 1..2762 (2762 bp) .Warning: Block unknown_AI is not significant enough, removed from profile. ..viterbi algorithm progress: [%]: ....viterbi algorithm progress: [%]: .viterbi algorithm progress: [%]: .......30examining piece 1..7139 (7139 bp).20Warning: Block ....Warning: Block unknown_D is not significant enough, removed from profile. .........Warning: Block .unknown_E is not significant enough, removed from profile. .......20.Warning: Block unknown_F is not significant enough, removed from profile. ..... .unknown_AC10 is not significant enough, removed from profile. examining piece 1Warning: Block .....3951 (3951 bp) .10..viterbi algorithm progress: [%]: viterbi algorithm progress: [%]: .50....Warning: Block unknown_A. is not significant enough, removed from profile. .Warning: Block unknown_H is not significant enough, removed from profile. ..Warning: Block unknown_D is not significant enough, removed from profile. Warning: Block unknown_E is not significant enough, removed from profile. ...Warning: Block unknown_M is not significant enough, removed from profile. .....10..examining piece unknown_K.1 is not significant enough, removed from profile. .examining piece .Warning: Block unknown_L is not significant enough, removed from profile. ...........................10.....examining piece 1..5312 (5312 bp) examining piece .....8105.. (8105 bp) ....Warning: Block unknown_J is not significant enough, removed from profile. .examining piece 1..6134 (6134 bp) Warning: Block unknown_N is not significant enough, removed from profile. .examining piece 1viterbi algorithm progress: [%]: ..4069 (4069 bp) ....40examining piece ..examining piece 1..6973 (6973 bp) 10viterbi algorithm progress: [%]: ..viterbi algorithm progress: [%]: viterbi algorithm progress: [%]: .........20...Warning: Block unknown_E is not significant enough, removed from profile. Warning: Block unknown_F is not significant enough, removed from profile. ....Warning: Block Warning: Block 1....20..examining piece 1..2606 (2606 bp) ..viterbi algorithm progress: [%]: 10unknown_I...Warning: Block 1...1.viterbi algorithm progress: [%]: Warning: Block ...unknown_C is not significant enough, removed from profile. 10...unknown_W...2020... is not significant enough, removed from profile. ...Warning: Block ...Warning: Block unknown_B is not significant enough, removed from profile. .examining piece 1..6269 (6269 bp) Warning: Block unknown_L is not significant enough, removed from profile. ..Warning: Block unknown_O is not significant enough, removed from profile. .........viterbi algorithm progress: [%]: Warning: Block unknown_L is not significant enough, removed from profile. ..........3040...examining piece 1..6083 (6083 bp) ..............20Warning: Block unknown_D is not significant enough, removed from profile. Warning: Block unknown_E is not significant enough, removed from profile. ....3060............................examining piece 1..5274 (5274 bp) viterbi algorithm progress: [%]: 16506 (16506 bp) Warning: Block unknown_P is not significant enough, removed from profile. ....6782 (6782 bp) examining piece 1..4099 (4099 bp) ...Warning: Block unknown_H is not significant enough, removed from profile. .....examining piece 1..3976 (3976 bp) .Warning: Block unknown_J is not significant enough, removed from profile. .viterbi algorithm progress: [%]: ...Warning: Block unknown_N is not significant enough, removed from profile. 30viterbi algorithm progress: [%]: ..unknown_A is not significant enough, removed from profile. viterbi algorithm progress: [%]: ............30......viterbi algorithm progress: [%]: ... is not significant enough, removed from profile. 10.......20.Warning: Block unknown_K is not significant enough, removed from profile. ..viterbi algorithm progress: [%]: ....3493 (3493 bp) examining piece 1..2185 (2185 bp) ...viterbi algorithm progress: [%]: .viterbi algorithm progress: [%]: ........50...10...............unknown_G is not significant enough, removed from profile. ..Warning: Block unknown_O is not significant enough, removed from profile. .Warning: Block unknown_Q is not significant enough, removed from profile. ...examining piece 1..3681 (3681 bp) ..Warning: Block unknown_P is not significant enough, removed from profile. ..Warning: Block unknown_U is not significant enough, removed from profile. Warning: Block unknown_R is not significant enough, removed from profile. .Warning: Block unknown_S is not significant enough, removed from profile. .viterbi algorithm progress: [%]: ...30..........Warning: Block unknown_J is not significant enough, removed from profile. ..examining piece 15290..25454 (10165 bp) ..Warning: Block unknown_N is not significant enough, removed from profile. ......Warning: Block unknown_W is not significant enough, removed from profile. ..Warning: Block unknown_Y is not significant enough, removed from profile. .40...10.Warning: Block unknown_D is not significant enough, removed from profile. .viterbi algorithm progress: [%]: Warning: Block unknown_W is not significant enough, removed from profile. .Warning: Block unknown_T is not significant enough, removed from profile. 30Warning: Block unknown_H is not significant enough, removed from profile. Warning: Block unknown_I is not significant enough, removed from profile. Warning: Block unknown_A is not significant enough, removed from profile. ....Warning: Block unknown_L is not significant enough, removed from profile. 70Warning: Block unknown_M is not significant enough, removed from profile. .5040.....Warning: Block unknown_L is not significant enough, removed from profile. ........10..................10......40..4020....50...10..........10..............examining piece 1..3183 (3183 bp) .....40..........10....10...........Warning: Block unknown_L is not significant enough, removed from profile. ...Warning: Block unknown_L is not significant enough, removed from profile. .Warning: Block unknown_M is not significant enough, removed from profile. ..Warning: Block unknown_O is not significant enough, removed from profile. Warning: Block unknown_P is not significant enough, removed from profile. 20..Warning: Block unknown_T is not significant enough, removed from profile. ...examining piece 1..3739 (3739 bp) .Warning: Block unknown_S is not significant enough, removed from profile. 2050.viterbi algorithm progress: [%]: ...examining piece 1..11479 (11479 bp) examining piece ............examining piece 1..5040 (5040 bp) ...10.1050examining piece 10262..37256 (26995 bp) ...30......10..................examining piece 1..4136 (4136....examining piece ...viterbi algorithm progress: [%]: ..examining piece 11.....20.5380viterbi algorithm progress: [%]: ...2010examining piece .101........107221 (7221 bp) examining piece 12580..19984........viterbi algorithm progress: [%]: .....60... (5380 bp) .....10....viterbi algorithm progress: [%]: ....8413 (8413 bp) ...40viterbi algorithm progress: [%]: ....80 (1...examining piece ........ bp).................1.viterbi algorithm progress: [%]: ...........20..... .....30viterbi algorithm progress: [%]: 6137.examining piece .....50....4154.501 (.10............10......30...60.. (............10.....10..............7405viterbi algorithm progress: [%]: .20.6137.. bp)...7390 bp)...10.. (. .............. ..7390.4154..30..........60.......... bp).....viterbi algorithm progress: [%]: 60...............20.viterbi algorithm progress: [%]: .......... bp).10. ....90.....10....... .....1010viterbi algorithm progress: [%]: .......40.20..20..70.20......30.................60...............70..................20........30...........20.20........................................60.........viterbi algorithm progress: [%]: ................20....60.........30.........20...........................20............10......30...................10...70.......70..2040........20.40.......70.....4030...........10...30.10...............10.......10............20...30.......50..........20..20..100....10...........70....40............. 10..30.....................30....80.........40...20.....40........20..20.............sampling algorithm progress: [%]: .....................50.....3020..........40..........10.30.......................30....80...........40.........80.....50......30.....10........30....30........10.........80........20.......................................90..90...............60.......30....2040.....40........................20...50..40.....20................50.......20.......30....20....40.50...................80......10...............70......20.70..30.30.50.....8010...............2030......................................40...20......1004050......30...10...... .....90......30.....sampling algorithm progress: [%]: ......................50..60..30...............................10.50...5050..........90..10............60.100......60....20.10.........40................30.................50......... ..30..60............30.................40........100....60.40..90..........50......................................40..... ....................40....20........50....30....5060..sampling algorithm progress: [%]: .30.sampling algorithm progress: [%]: .....30.........70.....40...................7020.60.........20................70.........40...........40.....40..........30.60................................6080.......6010070.....................40....10........30............20....70....7030.....30........ .........70....10.............40...100.60..60.....8020.....40....30.20..4050.80.sampling algorithm progress: [%]: .......................60.....20..............70...............................40................50....90............40.10.......50......50.10........50..........7050..80 ..30.............40................60...............2050...........10..............80......60...................20....70..........................50..........sampling algorithm progress: [%]: ..........6050...............70.........80............50..........40.....40........20....................80.....80.......30..........90.....40..........3060.....90...50......60....60...........70....2090.80.....70...................4040......30......................30..............80........70......4090.....90..60.50.............60.60..............90.................80........40.............80.60.90....70................30............90...............50....40...70....30....50..........100.......50.....70.80.......40100............................................... ...50...........10050.......50......3060.......sampling algorithm progress: [%]: .. 100... .70.90..........10..................90......6080....70..........40. ..........................3030......................100............sampling algorithm progress: [%]: ..........70.......90......................examining piece ......6070.407040.........10090.100..1......50...... ......sampling algorithm progress: [%]: 10.70.60.5749.........90....... (5749 bp) ....80..70...........50.50...40...100 .....sampling algorithm progress: [%]: .100.viterbi algorithm progress: [%]: 100.......... ..40........... .........20.20 .. ......sampling algorithm progress: [%]: ...................50...50sampling algorithm progress: [%]: ..60......examining piece 2591..10167 (7577 bp) .80...sampling algorithm progress: [%]: ......viterbi algorithm progress: [%]: .........80........80........sampling algorithm progress: [%]: ...100.80......30.....60.................... ..............20.....60.80.......sampling algorithm progress: [%]: ......10....50...70...80....................10...........50..........................601050...................9030..........40...................40........20....10...............60.................................50..10....80.........80...40...................909090...........30.....100100...10........................40..............100..10................70....8070.. ....90.5080..60..........20..90...........70.20.60..70......10....50...... ......20.....30.90...60.............90........70...........................50sampling algorithm progress: [%]: 100.. ............................70................sampling algorithm progress: [%]: ...50...80...100.........20..90.....7020.........10................ ..........60...20 ...........100........80.1010.20sampling algorithm progress: [%]: ..60..Warning: Block unknown_D is not significant enough, removed from profile. Warning: Block unknown_E is not significant enough, removed from profile. Warning: Block unknown_F is not significant enough, removed from profile. .Warning: Block unknown_G is not significant enough, removed from profile. .Warning: Block unknown_J is not significant enough, removed from profile. 40.....sampling algorithm progress: [%]: .30....60................................. ...examining piece ..........60.......10.....400.50..........100..................20.90.......12773.............60...........90.60...50 (....4060...................40...30................6090.....30....sampling algorithm progress: [%]: ..12374 bp) ......80...100.80..100...... ..80viterbi algorithm progress: [%]: 70....30.....20.30.....................100......30........50........sampling algorithm progress: [%]: .................30..60........80...............10.8040....20..................................... .......2090.........70.5010...........50..80....100...................90... ...2070..90.............40.. ...40..........70............sampling algorithm progress: [%]: ...10........80......70.70....................60....................40................. ....60.sampling algorithm progress: [%]: ...sampling algorithm progress: [%]: ........40...........60100......3020..10..70.....60.100.60....40..............50....................10..70..................sampling algorithm progress: [%]: .......1030.........50 ... ....................................809050....20..70....100........30.....100..30................70....................30............sampling algorithm progress: [%]: ..50..sampling algorithm progress: [%]: ....................70100...........4070......2010..................2020.100 .....30.........70....... .........70.....10.....90.................. ......sampling algorithm progress: [%]: .......60...80...90.90...90..................40......... ......60................10.90.................70.....70.........50............sampling algorithm progress: [%]: .........20.........60........80........80....805060..40examining piece 1..2511 (2511 bp) 70..80viterbi algorithm progress: [%]: ..........50sampling algorithm progress: [%]: ........50......100....80.......40..40.....30........10.....................20..........70........8080...........6020.......80...............90.....30..100............100................90... 80..90.20........10.....100.. 50....70.....40...........30.............20.......30...............30.............100.................90........90......80................... ........sampling algorithm progress: [%]: 70....80......sampling algorithm progress: [%]: .50....80..40.........60.....80.... ..60....9060............ ......................sampling algorithm progress: [%]: ..50...60............80.................40............10..........30.10030............. ..40........1050......100.Warning: Block unknown_H is not significant enough, removed from profile. .....80Warning: Block unknown_P is not significant enough, removed from profile. ..Warning: Block unknown_S is not significant enough, removed from profile. ..40.....80...................60......20.....sampling algorithm progress: [%]: . ..........100...........30.examining piece 1..4915 (4915 bp) ......viterbi algorithm progress: [%]: ...50......100.....examining piece .2088......70...............10...100... 60......90.....90.50.......60........................80907275...sampling algorithm progress: [%]: ....40... (.....10...60.. .............70.....30.sampling algorithm progress: [%]: ....10......5188.. bp)..........50..20... 10................................70.. ..70......7090..90......50.....40........viterbi algorithm progress: [%]: .....40...70.40.....50......100.......90. ..80.100..100.........60.........10........20....... .30.......70....20..............sampling algorithm progress: [%]: ....60.......90.....20............70................90.90..sampling algorithm progress: [%]: ........9080.........10...80..Warning: Block unknown_A is not significant enough, removed from profile. 20....... ..........examining piece ......30........40.....................30...........50..examining piece ....6215.....90......1....sampling algorithm progress: [%]: .........10....................16370 (10156 bp) ....60.50.80........viterbi algorithm progress: [%]: ................10..............100100......... ................80...100...............10060...... ...70...20......20.90..3974 (3974 bp) .40.....viterbi algorithm progress: [%]: ...............50..90.6010....60...60.....90.....7020. ..30....80...80Warning: Block ..100..100.....10..sampling algorithm progress: [%]: .90100...100..... .......unknown_L is not significant enough, removed from profile. Warning: Block unknown_M is not significant enough, removed from profile. ................30.......................................40 ..examining piece ......4490 ........60..30.....................70....90.................7010098........ 20............ ........Warning: Block .20......Warning: Block ..unknown_A is not significant enough, removed from profile. ..Warning: Block unknown_C is not significant enough, removed from profile. .80..Warning: Block unknown_K is not significant enough, removed from profile. 100Warning: Block unknown_L is not significant enough, removed from profile. ... 20....10unknown_D is not significant enough, removed from profile. .........10..10Warning: Block .. (sampling algorithm progress: [%]: .5609.....examining piece 1..3710 (3710 bp) .viterbi algorithm progress: [%]: ....40.............................examining piece 1..8072 (8072 bp) ...100........viterbi algorithm progress: [%]: ..............40unknown_D.90 bp)...... ......100.80Warning: Block unknown_B is not significant enough, removed from profile. Warning: Block unknown_D is not significant enough, removed from profile. .Warning: Block unknown_F is not significant enough, removed from profile. ....Warning: Block unknown_K is not significant enough, removed from profile. Warning: Block unknown_M is not significant enough, removed from profile. 50.50. is not significant enough, removed from profile. .....70.90..80......30.....10.......50.20.....................20............50....80.examining piece 1..3133 (3133 bp) ......10....1070...viterbi algorithm progress: [%]: ..examining piece 100.100...sampling algorithm progress: [%]: .30... ........viterbi algorithm progress: [%]: 70..80..30.1..20...sampling algorithm progress: [%]: .90.....40.....10...70..............9984 (9984 bp) .......100. 70.......... ... 30..80...........60.........30..............viterbi algorithm progress: [%]: .............90..60....30.............100.....examining piece 1..7437 (7437 bp) .....viterbi algorithm progress: [%]: ....60......20..70................sampling algorithm progress: [%]: ...sampling algorithm progress: [%]: ................30.........30...70........30.......90.......20......sampling algorithm progress: [%]: ...60............. ...40.......100...........10.. ........................80..40....8060.................10.....4070......50.......40.......................80...........................50...20...30......20..........................................70....examining piece 1..3957 (3957 bp) .80.viterbi algorithm progress: [%]: ........100...4040..... ..50........80.90..90....90........10010....sampling algorithm progress: [%]: ...80.8090..40..50.. ........Warning: Block unknown_J is not significant enough, removed from profile. .Warning: Block .unknown_N is not significant enough, removed from profile. ...10.......sampling algorithm progress: [%]: ....40.90Warning: Block unknown_W is not significant enough, removed from profile. 100.... .................20....20.examining piece 570..9941 (9372 bp) ......viterbi algorithm progress: [%]: ............40..7010.10..................60..90.30.100...................40...10..examining piece 1..8198 (8198 bp) .....10.10......viterbi algorithm progress: [%]: .........90..60............50.........100.....30....70.....................90........50......3050.100.........10............ ......80...........20............20..... ...............10.............80................................. ......Warning: Block unknown_D is not significant enough, removed from profile. ......Warning: Block unknown_K is not significant enough, removed from profile. ...Warning: Block unknown_M is not significant enough, removed from profile. ...Warning: Block unknown_U is not significant enough, removed from profile. 50...100...........50....... ..examining piece 1..4184 (4184 bp) ......sampling algorithm progress: [%]: ........100.10.....................80..30....80...70.100.....40...90....100viterbi algorithm progress: [%]: ..sampling algorithm progress: [%]: ......... ...20...50..30..... ...70sampling algorithm progress: [%]: 10040.40....2060.... ...30.............90.40......20........20.....100.....10...90......... ...20..100...................... ..................70.......1020.100........... ....60....................90..80..sampling algorithm progress: [%]: ... ..................803050.............80..Warning: Block unknown_C is not significant enough, removed from profile. ...................examining piece 1..5716 (5716 bp) .....viterbi algorithm progress: [%]: .60..90.30.....100.........90.50.50......10..........examining piece ................Warning: Block unknown_C is not significant enough, removed from profile. ..10..5040..... .40........10............30.......60..sampling algorithm progress: [%]: .40examining piece sampling algorithm progress: [%]: ....102128........9763 (7636 bp) ......viterbi algorithm progress: [%]: ......20..............40...........901...........50100......sampling algorithm progress: [%]: .....2020.30 ....90.......2050.90........70..7595 (7595 bp) ...........................6020.viterbi algorithm progress: [%]: ..50......40.....................90.....60...30.60..100..........................................90.20.30...60..................50.30...................10......30...........70.1020....................40...30...4070............. .........60..............................6040..............60.505050..30...10.............100....10...................100...40........... .. ..60.....100..........100......... ...................20.....60.........10....sampling algorithm progress: [%]: ........20......707070..............60.70..............................60.....100....30.20.80..80....50 ....20...............20.....10.........30......40......70..80........................50......20........................................60100......40.......90906010..70....60........10.....90.........................60.70....40.60........20............................................100... ...70......30...............30.80.......60.303050........70..30.40.80..100.....803080.......... ..............50..10......10......30.............................40.......................................50.........30.30....80.....100............ ..40....70...40..80......70.50..40.........20.....80...90.........................90.....40.......................sampling algorithm progress: [%]: ...............................................5090...80100.80.....70..30.......90..40.....20...................50..... ......90.......70......40.....................sampling algorithm progress: [%]: ..20.....90......40.9050...................50..............8010080.......10......100...... ..20.60.......50..........60........90....2040......70......................100......................3030...100.................30......20..... .. ........60.5040....80......... .100.................60 ..70...100....sampling algorithm progress: [%]: .. 505050.60.........................................10......50.....60sampling algorithm progress: [%]: 60.......10............50.........20..........................90.70....sampling algorithm progress: [%]: .........20.......40.........30.......60..............80100.........60..60..7040.4080.70 ....30......................10...40...90..................60....................4040...70............90.100.. 70....40........90..............80..80.......50.....10.90.70.............100........... ........60..................................70......70.........2080................40...........................70.......5030.....70............50.......80..30100......60. ........80........50.....50.......20............30..............40100..50...90..............100.......60 90...20.....70..........................6050............90....5070...5070.........80.....................................70.60.100.. ....90..70............................ ..100...80..........708030.. .....................90...50...50sampling algorithm progress: [%]: ....60...................80..80100.......60.................. ...9080.........70.......80.....30..80.100..60..90........90.... ..60..................70....60..............80.....100.... ...........80..10.30................................60......100..100....70..... .40..90......................80...... .......................40..............7020....70..90.......60.........9080...............90....90..40....70...100......90...90............sampling algorithm progress: [%]: ........100.......80.9080...........7060.........90...........3050.40........... ......... ..........................70....................................80100.100.sampling algorithm progress: [%]: 60. .4010050........10070...sampling algorithm progress: [%]: 80..... .40..................... .........10.........................100..10.100.50.......80... ............70.. .............. 90..................sampling algorithm progress: [%]: .100..5010......60...20.100....................80..90....90....... ....80.sampling algorithm progress: [%]: 90...50.709080.......... .....30........80................20.60...60..8020......................................50..40...90.90.........90..7060...............................100.............100.90.... .50100.sampling algorithm progress: [%]: ...... ... ...30........100.....10 ............10......80......60...30.....................100..........90.....100..10070..70............. 6040.....100........... ..... .....1080...............60..100.....9060..........90.205040...............20..................100.. sampling algorithm progress: [%]: ....... ...........100......20... ...60.80............50............70......80..30..................70sampling algorithm progress: [%]: ...30...................30.100...100....sampling algorithm progress: [%]: .....70........ ..60..10....10...........80............70.........40.......20................40.....................8090.....40......70.30........... ..90................50...10.......5090....4080..100...20 ...70..................................50..............50.80..........................60....60.60....90...100...............80......2090.. .70...sampling algorithm progress: [%]: .........90....30....100....70...........80..70..90.60.......sampling algorithm progress: [%]: ........70..... ................100....90.. ...........100.............100 ......... .30...10.....100....80 ........sampling algorithm progress: [%]: .10..80...70.40.....80.................90.........20.............90..........................40.90................50.80.903010...100..... ..........................20.................40.100....50. ..100........... 100.90...60.....20...50. ............................60.30...sampling algorithm progress: [%]: ....10060..... ........70.........30...........100.1070.............70.....................40..802080.........40....... ............90.80......30.........80.............9050..100 ..........40..........90.......50..........50....100..... .....60.....100... .60..........60.......70.....sampling algorithm progress: [%]: 70...........80...................9070.....80............100 ............80.90................100. ..9090...10......100 ........20.........30...........40...........50....100.. ..60......sampling algorithm progress: [%]: ....70..............10.80...............90.20............100. ..30........40........50........60........70........80........90........100