lowQualScore : 1 1 111111111 111111 2222222222222222222 11111111111111111 44444444444444444444444444444444444444444 111111111 1 1
lowQualScore : 3 4 3 7 6666 33 2 4 77777 4 2 111111111 77777 777 333333 4 555 33 4444444444444444444 2 77777 9 6 999 44444444444444444 444 33 7 99999999999999999999999999999999999999999 7 333333333 3 7 88 1 3 4 8 1 1 4 5 5
lowQualScore : . . . . .... .. . . ..... . . ......... ..... ... ...... . ... .. ................... . ..... . . ... ................. ... .. . ......................................... . ......... . . .. . . . . . . . . .
lowQualScore : 2 4 3 2 5555 99 6 9 11111 1 9 444444444 77777 666 111111 1 000 99 9999999999999999999 1 11111 7 2 999 99999999999999999 777 77 1 77777777777777777777777777777777777777777 6 333333333 1 3 33 3 6 8 6 7 6 4 5 0
consensus : CCTCCGTAAACCGGACACTCTATAA-ACCGGAATAC----TCTATAAACCGTGCATT--TTCAAAAGTCCCGA-----AAATNT-TCCT---------TC-----TTTTT--CTATA------GTANAATAA---ACC--TCTATAAACCGGAA---------CCTCTCTA--TTCCGGAAA-----CCGGACGAATTTCAGCAA--TTTTTGTGTATT-TTT-GT------ACATT---AATT-TACCTCCATAAACCGGAACAACTTA-AT-NT--NT-------TCTTGATTTTTTG--ACATTACACA---------AGGTAGTGTC-ATATCAACTGATAGCTT-GAGGCGTAATTGCAAGATTCGGCTGCCA-CCTTTTATCAAATGTC
Reference ( gi|4 ) : CCTCTGTAAACCGGACACTCTATAA-ACAGGAATAC----TCTATAAACCGTGCATT--TTCAAAAGTGCTGA-----AAATTT-TCCT---------TC-----TTTTT--CTATA------GTAGAATAA---ACC--TCTATAAACCGGAA---------TCTCTCAA--TTCTGGAAA-----CCGAACAAACTTCAGCAA--TTTTTGTGTATT-TTT-GT------ACATT---AATT-TACCTCTATAAACCGGAGCTACTTG-AT-AT--AT-------TCTGGATTTTTTT--CCACTACACA---------AGGTAGTGCC-ATATCAATCGATAGCTT-GAGGCATAATTGTAAGTTTTGGCTGCCA-CTTTTGATCAAATGTC
gi|5 : CCTCCGTAAACCGGATCCTCTAAAA-ACCGGAATAT----TCTATAAACCGCGCAAT--TTCAAAAGTCCAAA-----AAATGC-TCCT---------TC-----TCTTT---TATAAT----GTAGAATAA---ACC--TTTGTAAACCGGAA---------CCTCTCTA--TTCCGGAAA-----ACGGACGGATTTCAGCA---TTTTTGTGTAAT-TTT-GT------ACATT---AATT-TACCTCCATAAACCGGAATTACTTA-TT-CT--CT-------TCTTGA-TTTTTG--ACATTTCACA---------AGGTAGTGTC-ATATCAAATGATAGCTT-GAGGCATAGTTGTAAGATCCGACTGCTA-CCTTT
gi|6 : aCCTCTGTAAACCGGGCTCTATATAA-ACCGGAATAC----TCTATAAACCACGTACT--TTTAAA-GTTCAGA-----AAATGT-TCCT---------T--------TTT--CTACT------GTAGAATAG---ACC--TCTGTATAGTGGAA---------TCTATCTA--TTCCGGAAA-----ACGGACGGATTTCAGCA-----TTCGTGTA----------------CATT---AATT-AACCTCCATCAACCGAAATAACTTA-AT-CC--CT-------TCTTAATTTTTG---ACATTACACA---------AGATATTGTC-ATATCAAATGATAACTT-GAGGCATAGTTGCATGATTCGACTTCCA-CCTTTTATCAAAc
gi|2 : gaaaCTTCCGCAAACCGGACACTCTCTAATAC-GGAATAC----ACTATAAACCGTGCTTTCTTTTAAAAATGCCGA-----AAGTTT--CGT---------TC-----TTTTT--CTATA------GTGCAATAA---ACC--TCTATAAACCGGAA---------CTTCCCTT--TTCCGGAAA-----CCG-------TT---CAA--TTTTTGGGCAGT-TTT-GTGTATAAACAAT---AAAT-TACCTCAATAAACCGGAGCAAC-----------AT-------TT----TTTTTTG--ACAATACACA---------AGGTAGTGTCAATATTTGCCGATAGCTC-GAGGTGTAATTGCAAATT---GCCGACA-Cagcc
gi|1 : CCTCCGTACACCGGACATTCTGTAA-ACCGAAGTAC----TCTATAAACTGTGCTTT--TTCAAAAGTCCCGA-----AAATGT-TCGT---------TC-----CTTTT--GAATA------GTGCAATAA---ACC--TCTATAAACAGGAA---------TCTCTCTA--TTCCAGAAA-----CCAGACAACTTTTGGTCA--TTTTTGTGCACA-TTT-AA------ACAAT---AAAA-TACCTCTTTAAACCGGAACAAC--A-AT-TT--AT-------T-TGA-----------CAATACACA---------AGGTAGTGTCAATGTTTGCCAATAGTTC-AAGGTGAAATTGaggtgtcgtgtgtcattgtttatccaatcagcggtgcgtgttttatctacataagtgtgacaatcgcctaccttgcggcaaccgatgcaacaataacggtaa
gi|8 : atgtaaCCTCTGTAAACCGGAC------T------GGAAGAC----TCTATAAAC--TGCATT--ATCAGAAGTCCAGA-----TAATGT-GCTT---------TC-----TTTTTAACTATT------GTAGCATAA---ACC---CTGTAAACCGAAA---------CCTCTC----TCCTGGAAA-----CCGGAAGAATTTCATCAA--TTTTTG-----------------------T---AA----ACCGCAATA----------ACTTA-A--AT--CT-------TCATGA-TATTTT--ACATTACACA---------AGGTAGTGTC-ATATCATTTGATAGCTT-GAGGCATAATccaattgccaaacaggtattgtgtgtcattgtttacccaatcagctgtgcatgttttatctacataaatgtgacaatcgcctaccttgtggtcattggttaaataataaaggtaa
gi|10 : gaaaCCTCTATAAACCAAACACTTTATAA-ACCGGAATACTCAGTCTATATATCGTGCAAT--TTCTAAAATA-TAAAAAATAAATTT-TCCT---------TC-----TTTTT--ATATT------GT-GAATAA---ACC--T--------------------------------TTTCGGAAA-----CAGGATATAATTCAGCAA--TTTTTGTG--TT-TTT-AT------ACATT---AATT-TACCATAGTAAACTGGAAAAACATA-AT-AT--CT-------TCTTGATTgacaatatt
gi|18 : aaCTTCCGCAAAGCAGACACTCTATTA-ACCGGAATGC----ACTATAAACTGTGCTCT--TTTAAAAGTCCTGA-----AAATTT-TTCA---------TC-----TTTTT--Cacgttagatagtgtcaaatggtat
gi|20 : aaaCCTCCGTAAACCGGATCCTCTAAAA-ACCGGAATAT----TCTATAAA
gi|17 : cagtgaaaCTCTGTGAACTGGACACT--ATAA-ATCGGAATAC----TCTATAAACCGTGTATT--TTCAAAAGTCCTGA-----AAATCTGTCCT---------
gi|7 : aatTCCGTAAACCGGACCCTATATAA-AATGGACTAT----TCTATAAACTGCTCACT--TTC-AAAGTTCAGA-----AAATGT-TCCTGGATGGATGTCAGCATTTTTT--GTGTATTTTTTGTACATTAATTTACC--TCCATAAACCGGAATAACCTAATTTTCTTGA--TTTTGGACA-----TTACACAAGCggccattgtgtgaaggcataa
gi|11 : gtgaaacgCCGGACACTTTATGA-ACCGGAATTC----TCTATAAAATGTGCATT--TTCAAAAGTCCCGA-----AAATGT-TCCT---------TT-----T---------------------AATAA---ACC--TCTATAAACCGGAA---------CCTCTCTA--TTCCGGAAA-----CCGGATAAATTTCAGCAA--TTTCAGT--------------------ATT---AATT-TACCT---TAAATCcagtgtcatatcaaatgatagcttgaggactagtatcaagattcgactgccaccttttttcaaataccatt
gi|3 : ATACTTTATAA-ACCAGAATAC----TCTATAAACCGACCATT--TTCAAAAATCCCGA-----AAATTT-TCCT---------TC-----TTTTT--TTACA------GTAAAATGA---ACC--TCAATAAACCGGAA---------CCTCTCTA--TTCCGGAAG-----CTGGACAAATACTAGCTT--TTTTTGTGTATT-TTT-GT------ACATT---AAAA-TACTTCCCTTATCTGGAGCAATTTGCATAAT--ATGATAGTATCTTGATTTTTTG--ACATTATACA---------AGGTAGTGCA-ATATCAATTGATAGCTT-GAGGCATAATTGTAAGATTTGTCTGCCACCTTTTTCCCAAATTTCaattttttttaaatataccataaggtattattatgttt
gi|16 : aaaAATAC----TCTATTAACCGTGCTTT--TTTAAAAGTTCCGA-----AAATGT-TTGT---------TC-----TTGTT--ATATA------GTGCAATAA---ACC--TCTATAAACCGGGA---------CCTCTCTA--TTCTGAAAA-----CCGGACAAatt
gi|12 : aCATT--TTTAAAACTCCTGA-----AAACTT-TCCT---------TC-----ATTTT--CTATA------GCATAATAA---ACC--T--AAAAA----AA---------------AA--ATCTG-------------ACAAATTATAGCAA--TTTTTGTGTACT-TT----------ACATT---AATT-TACCTCTATAAACTGAAGCTAC-TG-AT-AT--CT-------Tc
gi|9 : aaatctccgtacacaATT--TTCA---GTCCCGA-----TATGTT-TTCT---------TC-----TTTTT--CTTTA------GTAAAATAA---ACC--TCTATAAACCAGAA---------------------------A-----CCTGACAAATTTCAGCAT--TTTCTATGTATC-TGT-GT------GCAACGAAAAT----CCTCCTTAAACCGGAATTATTTG-AT-AT--TT-------TCTTGATTTTTA---ACATTAAACA---------AGGTGGTGTC-ATATCAATTGATAACTTTGAGGCATAATTGTAAGATTATGCTGCCA-CCTTTTATTAAGTGTCgtat
gi|7 : --CTATA-------TAAAATGG---ACTATTCTATAAACTGCTC---------ACTTTCAAAGTTCAGAAAATGTTCCTGGATGGATGTCAGCAT--TTTTTGTGTATT-TTTTGT------ACATT---AATT-TACCTCCATAAACCGGAATAACCTA-AT--T---T-------TCTTGATTTTGG---ACATTACACA---------AGCCAGTGTC-ATATCAAATGATAGCTT-GAGGACTAGTATCAAGATTCGACTGCCA-CCTTTTTTCAAATact
gi|14 : gtgaaacgtccgtaaaccggaccAGAATAA---ACA--TCTATAAATCTGAA---------CCGCCCTA--TTCTAGAAA-----CCGGACAAATTTCAG-AATTTTTTTTTGTATT-TTT-GT------ACATT---AATT-TACCTCTATAATCTTGAATAGTTTA-AT-CT--TT-------TGTTTATTTATTG--ACATTACACA---------Aaccatt
gi|13 : TTAGCAG--TTTTTGTG-ATTGTTT-GT------TCATT-----TTCTACTTCCATCAACCGGAATAACTTG-AT-GT---T-------T---GACATT-----ACATTACACA---------AGGTAGTGCC-ATATCAATTTATAGCCT-TGGGCATCATTGCAAGATTTAGCTGCCA-CATTATATCAa
gi|15 : T------ACATC---AATT-TTTCTC-ATAAACTGGAATAACTTA-AT-CCTCAT-------CTTGG-TTTTTTTGACAATTAGACATGGTACTGAAGGTAGTGTC-ATATCAACAGACAGC----AGGC----TTG-AGGCTTTGGCTTCCA-CCTTTTATCAAATGTC
gi|11 : TT---AATA-AACCTCTATAAACCGGAACCTCTC------T--AT-------TCCGGAa
gi|19 : ccggacactttatgaaccggaattctctataaaatgtgcattttcaaaagtcccgaaaatgttccttA---------AGGTAGTGTC-ATATCAACAGACAGC----AGGC----TTG-AGGCTTTGGCTGCCA-CCTTTTATCAAATGTCaaccggataaatttcagcaatttcagtattaatttaccttaaatcaattttttttaaatataccataaggtattattatgttt
Alignments
lowQualScore : 111111111111111 11111 1111111 1111 111111111
lowQualScore : 1 2 6666 33 1 99999 2 555 44 2 33 4 0 5 888888 888888 2 4 33 0 000000000000000 444 2 4 11 00000 33 9999999 1111 2 33 111111111 6 2 0 3 9 3 5 4
lowQualScore : . . .... .. . ..... . ... .. . .. . . . ...... ...... . . .. . ............... ... . . .. ..... .. ....... .... . .. ......... . . . . . . . .
lowQualScore : 2 3 5555 99 7 99999 9 888 22 0 99 1 1 0 222222 222222 1 6 99 1 000000000000000 777 7 3 77 55555 99 8888888 1111 9 99 444444444 2 9 4 3 8 7 5 4
consensus : CCTCCGTAAACCGGACACTCTATAAACCGGAATACTC----TATAAACCGTGCATT--TTCAAAAGTCCCGAAAATN----T-TCCTTCTTTTT--CTATA--GTAGAATAAACC--TCTATAAACCGGAACCTCTCTATTC------CGGAAA------CCGGACGAATTTCAGCAATTTTTGT--GTATT-TTT-GT------ACATT---AATT-TACCTCCATAAACCGGAACAACT----TAATN-T-CT----TCTTGATTTTTT-GACA-T--TACACA---------AGGTAGTGTC-ATATCAANCGATAGCTT-GAGGCATAATTGCAAGATTCGGCTGCCACC-TTTTATCAAATGTC
Reference ( family-1360 ) : CCTCCGTAAACCGGACACTCTATAAACCGGAATACTC----TATAAACCGTGCATT--TTCAAAAGTCCCGAAAATN----T-TCCTTCTTTTT--CTATA--GTANAATAAACC--TCTATAAACCGGAACCTCTCTATTC------CGGAAA------CCGGACGAATTTCAGCAATTTTTGT--GTATT-TTT-GT------ACATT---AATT-TACCTCCATAAACCGGAACAACT----TAATN-T-NT----TCTTGATTTTTT-GACA-T--TACACA---------AGGTAGTGTC-ATATCAACTGATAGCTT-GAGGCGTAATTGCAAGATTCGGCTGCCACC-TTTTATCAAATGTC
gi|1 : CCTCCGTACACCGGACATTCTGTAAACCGAAGTACTC----TATAAACTGTGCTTT--TTCAAAAGTCCCGAAAATG----T-TCGTTCCTTTT--GAATA--GTGCAATAAACC--TCTATAAACAGGAATCTCTCTATTC------CAGAAA------CCAGACAACTTTTGGTCATTTTTGT--GCACA-TTT-AA------ACAAT---AAAA-TACCTCTTTAAACCGGAACAAC------AATT-T-A--------------TTT-GACA-A--TACACA---------AGGTAGTGTCAATGTTTGCCAATAGTTC-AAGGTGAAATTGC
gi|10 : atgtaaCCTCTATAAACCAAACACTTTATAAACCGGAATACTCAGTCTATATATCGTGCAAT--TTCTAAAATATAAAAAATAAATTT-TCCTTCTTTTT--ATATT--GT-GAATAAACC--T---------------------TTT------CGGAAA------CAGGATATAATTCAGCAATTTTTGT--GT--T-TTT-AT------ACATT---AATT-TACCATAGTAAACTGGAAAAACA----TAATA-T-CT----TCTTGATT------ACG-T--T--------------AGATAGTGTC-AAATcaattgccaaacaggtattgtgtgtcattgtttacccaatcagctgtgcatgttttatctacataaatgtgacaatcgcctaccttgtggtcattggttaaataataaaggtaa
gi|11 : aaCCGGACACTTTATGAACCGGAATTCTC----TATAAAATGTGCATT--TTCAAAAGTCCCGAAAATG----T-TCCTTTT-----------------AATAAACC--TCTATAAACCGGAACCTCTCTATTC------CGGAAA------CCGGATAAATTTCAGCAATTTCAGT----------------------ATT---AATT-TACCT---TAAATCggtat
gi|12 : CATT--TTTAAAACTCCTGAAAACT----T-TCCTTCATTTT--CTATA--GCATAATAAACC--T--AAAAA----AA--------------------AAA------TCTGACAAATTATAGCAATTTTTGT--GTACT-TT----------ACATT---AATT-TACCTCTATAAACTGAAGCTAC-----TGATA-T-CT----Taattttttttaaatataccataaggtattattatgttt
gi|13 : aaatctccgtacacaTTAGCAGTTTTTGT--G-ATTGTTT-GT------TCATT-----TTCTACTTCCATCAACCGGAATAACT----TGATG-T---------TTGACATT----ACA-T--TACACA---------AGGTAGTGCC-ATATCAATTTATAGCCT-TGGGCATCATTGCAAGATTTAGCTGCCACA-TTATATCAgtat
gi|14 : AGAATAAACA--TCTATAAATCTGAACCGCCCTATTC------TAGAAA------CCGGACAAATTTCAG-AATTTTTTTTTGTATT-TTT-GT------ACATT---AATT-TACCTCTATAATCTTGAATAGTT----TAATC-T-TT----TGTTTATTTATT-GACA-T--TACACA---------A
gi|15 : T------ACATC---AATT-TTTCTC-ATAAACTGGAATAACT----TAATCCT-CA----TCTTGGTTTTTTTGACAAT--TAGACATGGTACTGAAGGTAGTGTC-ATATCAACAGACAGC----AGGC----TTG-AGGCTTTGGCTTCCACC-TTTTATCAAATGTCa
gi|16 : AATACTC----TATTAACCGTGCTTT--TTTAAAAGTTCCGAAAATG----T-TTGTTCTTGTT--ATATA--GTGCAATAAACC--TCTATAAACCGGGACCTCTCTATTC------TGAAAA------CCGGACAAa
gi|17 : aCTCTGTGAACTGGACACT--ATAAATCGGAATACTC----TATAAACCGTGTATT--TTCAAAAGTCCTGAAAATC----TGTCCTc
gi|18 : aatCTTCCGCAAAGCAGACACTCTATTAACCGGAATGCAC----TATAAACTGTGCTCT--TTTAAAAGTCCTGAAAATT----T-TTCATCTTTTT--Cggccattgtgtgaaggcataa
gi|19 : aaaTTA-GACA-TGGTACTGA---------AGGTAGTGTC-ATATCAACAGACAGC----AGGC----TTG-AGGCTTTGGCTGCCACC-TTTTATCAAATGTC
gi|2 : CTTCCGCAAACCGGACACTCTCTAATACGGAATACAC----TATAAACCGTGCTTTCTTTTAAAAATGCCGAAAGT-----T-TCGTTCTTTTT--CTATA--GTGCAATAAACC--TCTATAAACCGGAACTTCCCTTTTC------CGGAAA------CCG------TT----CAATTTTTGG--GCAGT-TTT-GTGTATAAACAAT---AAAT-TACCTCAATAAACCGGAGCAAC-------ATT-T-------------TTTTTT-GACA-A--TACACA---------AGGTAGTGTCAATATTTGCCGATAGCTC-GAGGTGTAATTGCAA-ATT--GCCGACACat
gi|20 : CCTCCGTAAACCGGATCCTCTAAAAACCGGAATATTC----TATAAAaggtgtcgtgtgtcattgtttatccaatcagcggtgcgtgttttatctacataagtgtgacaatcgcctaccttgcggcaaccgatgcaacaataacggtaa
gi|3 : cagtgaaaATACTTTATAAACCAGAATACTC----TATAAACCGACCATT--TTCAAAAATCCCGAAAATT----T-TCCTTCTTTTT--TTACA--GTAAAATGAACC--TCAATAAACCGGAACCTCTCTATTC------CGGAAG------CTGGACAAATACTAGCTTTTTTTGT--GTATT-TTT-GT------ACATT---AAAA-TACTTCCCTTATCTGGAGCAATTTGCATAATA-TGATAGTATCTTGATTTTTT-GACA-T--TATACA---------AGGTAGTGCA-ATATCAATTGATAGCTT-GAGGCATAATTGTAAGATTTGTCTGCCACCTTTTTCCCAAATTTC
gi|4 : aaaCCTCTGTAAACCGGACACTCTATAAACAGGAATACTC----TATAAACCGTGCATT--TTCAAAAGTGCTGAAAATT----T-TCCTTCTTTTT--CTATA--GTAGAATAAACC--TCTATAAACCGGAATCTCTCAATTC------TGGAAA------CCGAACAAACTTCAGCAATTTTTGT--GTATT-TTT-GT------ACATT---AATT-TACCTCTATAAACCGGAGCTACT----TGATA-T-AT----TCTGGATTTTTT-TCCA-C--TACACA---------AGGTAGTGCC-ATATCAATCGATAGCTT-GAGGCATAATTGTAAGTTTTGGCTGCCACT-TTTGATCAAATGTCatt
gi|5 : CCTCCGTAAACCGGATCCTCTAAAAACCGGAATATTC----TATAAACCGCGCAAT--TTCAAAAGTCCAAAAAATG----C-TCCTTCTCTTT---TATAATGTAGAATAAACC--TTTGTAAACCGGAACCTCTCTATTC------CGGAAA------ACGGACGGATTTCAGCA-TTTTTGT--GTAAT-TTT-GT------ACATT---AATT-TACCTCCATAAACCGGAATTACT----TATTC-T-CT----TCTTGATTTT-T-GACA-T--TTCACA---------AGGTAGTGTC-ATATCAAATGATAGCTT-GAGGCATAGTTGTAAGATCCGACTGCTACC-TTT
gi|6 : aCCTCTGTAAACCGGGCTCTATATAAACCGGAATACTC----TATAAACCACGTACT--TTTAAA-GTTCAGAAAATG----T-TCCTT---TTT--CTACT--GTAGAATAGACC--TCTGTATAGTGGAATCTATCTATTC------CGGAAA------ACGGACGGATTTCAGCA---TTCGT--GTA----------------CATT---AATT-AACCTCCATCAACCGAAATAACT----TAATC-C-CT----TCTTAATTTT-T-GACA-T--TACACA---------AGATATTGTC-ATATCAAATGATAACTT-GAGGCATAGTTGCATGATTCGACTTCCACC-TTTTATCAAAc
gi|7 : gaaa--CTATA---TAAAATGGACTATTCTATAAACTG----CTCACT-TTCAAAGTTCAGAAAATGTTCCTGGATGGATGTCAGCATTTTTTGT--GTATT-TTTTGT------ACATT---AATT-TACCTCCATAAACCGGAATAACC----TAATT-T-------TCTTGATTTTG--GACA-T--TACACA---------AGCCAGTGTC-ATATCAAATGATAGCTT-GAGGACTAGTATCAAGATTCGACTGCCACC-TTTTTTCAAATagcc
gi|8 : gtgaaacgtccgtaaaccggaccCCTCTGTAAACCGGAC-----------TGGAAGACTC----TATAAAC--TGCATT--ATCAGAAGTCCAGATAATG----T-GCTTTCTTTTTAACTATT--GTAGCATAAACC---CTGTAAACCGAAACCTCTCT--CC------TGGAAA------CCGGAAGAATTTCATCAATTTTTG-------------------------T---AA----ACCGCAATA----------ACT----TAA-A-T-CT----TCATGATATTTT--ACA-T--TACACA---------AGGTAGTGTC-ATATCATTTGATAGCTT-GAGGCATAATGACAATATTaccatt
gi|9 : gaaaATT--TTCA---GTCCCGATATGT----T-TTCTTCTTTTT--CTTTA--GTAAAATAAACC--TCTATAAACCAGAA----------------------A------CCTGACAAATTTCAGCATTTTCTAT--GTATC-TGT-GT------GCAACGAAAAT----CCTCCTTAAACCGGAATTATT----TGATA-T-TT----TCTTGATTTTT--AACA-T--TAAACA---------AGGTGGTGTC-ATATCAATTGATAACTTTGAGGCATAATTGTAAGATTATGCTGCCACC-TTTTATTAAGTGTC
Alignments
lowQualScore : 111111111111111 11111 1111111111 1111 111111111
lowQualScore : 1 2 6666 33 1 99999 2 555 44 2 33 4 0 5 888888 888888 2 4 33 0 000000000000000 444 2 4 11 00000 6666666666 1111 2 33 111111111 6 44 0 3 3 3 5 4
lowQualScore : . . .... .. . ..... . ... .. . .. . . . ...... ...... . . .. . ............... ... . . .. ..... .......... .... . .. ......... . .. . . . . . .
lowQualScore : 2 3 5555 99 7 99999 9 888 22 4 99 1 1 0 222222 222222 1 6 99 1 000000000000000 777 7 3 77 55555 9999999999 1111 9 99 444444444 2 55 4 3 7 7 5 4
consensus : CCTCCGTAAACCGGACACTCTATAAACCGGAATACTC----TATAAACCGTGCATT--TTCAAAAGTCCCGAAAATN----T-TCCTTCTTTTT--CTATA--GTAGAATAAACC--TCTATAAACCGGAACCTCTCTATTC------CGGAAA------CCGGACGAATTTCAGCAATTTTTGT--GTATT-TTT-GT------ACATT---AATT-TACCTCCATAAACCGGAACAACT----TAATN-T-----CTTCTTGATTTTTT-GACA-T--TACACA---------AGGTAGTGTC-ATATCAANCGATAGCTT-GAGGCATAATTGCAAGATTCGGCTGCCACC-TTTTATCAAATGTC
Reference ( family-1360 ) : CCTCCGTAAACCGGACACTCTATAAACCGGAATACTC----TATAAACCGTGCATT--TTCAAAAGTCCCGAAAATN----T-TCCTTCTTTTT--CTATA--GTAGAATAAACC--TCTATAAACCGGAACCTCTCTATTC------CGGAAA------CCGGACGAATTTCAGCAATTTTTGT--GTATT-TTT-GT------ACATT---AATT-TACCTCCATAAACCGGAACAACT----TAATN-T-----CTTCTTGATTTTTT-GACA-T--TACACA---------AGGTAGTGTC-ATATCAANCGATAGCTT-GAGGCATAATTGCAAGATTCGGCTGCCACC-TTTTATCAAATGTC
gi|1 : CCTCCGTACACCGGACATTCTGTAAACCGAAGTACTC----TATAAACTGTGCTTT--TTCAAAAGTCCCGAAAATG----T-TCGTTCCTTTT--GAATA--GTGCAATAAACC--TCTATAAACAGGAATCTCTCTATTC------CAGAAA------CCAGACAACTTTTGGTCATTTTTGT--GCACA-TTT-AA------ACAAT---AAAA-TACCTCTTTAAACCGGAACAAC------AAT----------------TTATTT-GACA-A--TACACA---------AGGTAGTGTCAATGTTTGCCAATAGTTC-AAGGTGAAATTGC
gi|10 : atgtaaCCTCTATAAACCAAACACTTTATAAACCGGAATACTCAGTCTATATATCGTGCAAT--TTCTAAAATATAAAAAATAAATTT-TCCTTCTTTTT--ATATT--GT-GAATAAACC--T---------------------TTT------CGGAAA------CAGGATATAATTCAGCAATTTTTGT--GT--T-TTT-AT------ACATT---AATT-TACCATAGTAAACTGGAAAAACA----TAATA-T-----CTTCTTGATT------ACG-T--T--------------AGATAGTGTC-AAATcaattgccaaacaggtattgtgtgtcattgtttacccaatcagctgtgcatgttttatctacataaatgtgacaatcgcctaccttgtggtcattggttaaataataaaggtaa
gi|11 : aaCCGGACACTTTATGAACCGGAATTCTC----TATAAAATGTGCATT--TTCAAAAGTCCCGAAAATG----T-TCCTTTT-----------------AATAAACC--TCTATAAACCGGAACCTCTCTATTC------CGGAAA------CCGGATAAATTTCAGCAATTTCAGT----------------------ATT---AATT-TACCT---TAAATCggtat
gi|12 : CATT--TTTAAAACTCCTGAAAACT----T-TCCTTCATTTT--CTATA--GCATAATAAACC--T--AAAAA----AA--------------------AAA------TCTGACAAATTATAGCAATTTTTGT--GTACT-TT----------ACATT---AATT-TACCTCTATAAACTGAAGCTAC-----TGATA-T-----CTTaattttttttaaatataccataaggtattattatgttt
gi|13 : aaatctccgtacacaTTAGCAGTTTTTGT--G-ATTGTTT-GT------TCATT-----TTCTACTTCCATCAACCGGAATAACT----TGATG-T---------TTGACATT----ACA-T--TACACA---------AGGTAGTGCC-ATATCAATTTATAGCCT-TGGGCATCATTGCAAGATTTAGCTGCCACA-TTATATCAgtat
gi|14 : AGAATAAACA--TCTATAAATCTGAACCGCCCTATTC------TAGAAA------CCGGACAAATTTCAG-AATTTTTTTTTGTATT-TTT-GT------ACATT---AATT-TACCTCTATAATCTTGAATAGTT----TAATC-T-----TTTGTTTATTTATT-GACA-T--TACACA---------A
gi|15 : T------ACATC---AATT-TTTCTC-ATAAACTGGAATAACT----TAATCCT-----CATCTTGGTTTTTTTGACAAT--TAGACATGGTACTGAAGGTAGTGTC-ATATCAACAGACAGC----AGGC----TTG-AGGCTTTGGCTTCCACC-TTTTATCAAATGTCa
gi|16 : AATACTC----TATTAACCGTGCTTT--TTTAAAAGTTCCGAAAATG----T-TTGTTCTTGTT--ATATA--GTGCAATAAACC--TCTATAAACCGGGACCTCTCTATTC------TGAAAA------CCGGACAAa
gi|17 : aCTCTGTGAACTGGACACT--ATAAATCGGAATACTC----TATAAACCGTGTATT--TTCAAAAGTCCTGAAAATC----TGTCCTc
gi|18 : aatCTTCCGCAAAGCAGACACTCTATTAACCGGAATGCAC----TATAAACTGTGCTCT--TTTAAAAGTCCTGAAAATT----T-TTCATCTTTTT--Cggccattgtgtgaaggcataa
gi|19 : aaaTTA-GACA-TGGTACTGA---------AGGTAGTGTC-ATATCAACAGACAGC----AGGC----TTG-AGGCTTTGGCTGCCACC-TTTTATCAAATGTC
gi|2 : CTTCCGCAAACCGGACACTCTCTAATACGGAATACAC----TATAAACCGTGCTTTCTTTTAAAAATGCCGAAAGT-----T-TCGTTCTTTTT--CTATA--GTGCAATAAACC--TCTATAAACCGGAACTTCCCTTTTC------CGGAAA------CCG------TT----CAATTTTTGG--GCAGT-TTT-GTGTATAAACAAT---AAAT-TACCTCAATAAACCGGAGCAAC-------ATT-T-------------TTTTTT-GACA-A--TACACA---------AGGTAGTGTCAATATTTGCCGATAGCTC-GAGGTGTAATTGCAA-ATT--GCCGACACat
gi|20 : CCTCCGTAAACCGGATCCTCTAAAAACCGGAATATTC----TATAAAaggtgtcgtgtgtcattgtttatccaatcagcggtgcgtgttttatctacataagtgtgacaatcgcctaccttgcggcaaccgatgcaacaataacggtaa
gi|3 : cagtgaaaATACTTTATAAACCAGAATACTC----TATAAACCGACCATT--TTCAAAAATCCCGAAAATT----T-TCCTTCTTTTT--TTACA--GTAAAATGAACC--TCAATAAACCGGAACCTCTCTATTC------CGGAAG------CTGGACAAATACTAGCTTTTTTTGT--GTATT-TTT-GT------ACATT---AAAA-TACTTCCCTTATCTGGAGCAATTTGCATAATA-TGATAGTATCTTGATTTTTT-GACA-T--TATACA---------AGGTAGTGCA-ATATCAATTGATAGCTT-GAGGCATAATTGTAAGATTTGTCTGCCACCTTTTTCCCAAATTTC
gi|4 : aaaCCTCTGTAAACCGGACACTCTATAAACAGGAATACTC----TATAAACCGTGCATT--TTCAAAAGTGCTGAAAATT----T-TCCTTCTTTTT--CTATA--GTAGAATAAACC--TCTATAAACCGGAATCTCTCAATTC------TGGAAA------CCGAACAAACTTCAGCAATTTTTGT--GTATT-TTT-GT------ACATT---AATT-TACCTCTATAAACCGGAGCTACT----TGATA-T-----ATTCTGGATTTTTT-TCCA-C--TACACA---------AGGTAGTGCC-ATATCAATCGATAGCTT-GAGGCATAATTGTAAGTTTTGGCTGCCACT-TTTGATCAAATGTCatt
gi|5 : CCTCCGTAAACCGGATCCTCTAAAAACCGGAATATTC----TATAAACCGCGCAAT--TTCAAAAGTCCAAAAAATG----C-TCCTTCTCTTT---TATAATGTAGAATAAACC--TTTGTAAACCGGAACCTCTCTATTC------CGGAAA------ACGGACGGATTTCAGCA-TTTTTGT--GTAAT-TTT-GT------ACATT---AATT-TACCTCCATAAACCGGAATTACT----TATTC-T-----CTTCTTGATTTT-T-GACA-T--TTCACA---------AGGTAGTGTC-ATATCAAATGATAGCTT-GAGGCATAGTTGTAAGATCCGACTGCTACC-TTT
gi|6 : aCCTCTGTAAACCGGGCTCTATATAAACCGGAATACTC----TATAAACCACGTACT--TTTAAA-GTTCAGAAAATG----T-TCCTT---TTT--CTACT--GTAGAATAGACC--TCTGTATAGTGGAATCTATCTATTC------CGGAAA------ACGGACGGATTTCAGCA---TTCGT--GTA----------------CATT---AATT-AACCTCCATCAACCGAAATAACT----TAATC-C-----CTTCTTAATTTT-T-GACA-T--TACACA---------AGATATTGTC-ATATCAAATGATAACTT-GAGGCATAGTTGCATGATTCGACTTCCACC-TTTTATCAAAc
gi|7 : gaaa--CTATA---TAAAATGGACTATTCTATAAACTG----CTCACT-TTCAAAGTTCAGAAAATGTTCCTGGATGGATGTCAGCATTTTTTGT--GTATT-TTTTGT------ACATT---AATT-TACCTCCATAAACCGGAATAACC----TAATT-T-------TCTTGATTTTG--GACA-T--TACACA---------AGCCAGTGTC-ATATCAAATGATAGCTT-GAGGACTAGTATCAAGATTCGACTGCCACC-TTTTTTCAAATagcc
gi|8 : gtgaaacgtccgtaaaccggaccCCTCTGTAAACCGGAC-----------TGGAAGACTC----TATAAAC--TGCATT--ATCAGAAGTCCAGATAATG----T-GCTTTCTTTTTAACTATT--GTAGCATAAACC---CTGTAAACCGAAACCTCTCT--CC------TGGAAA------CCGGAAGAATTTCATCAATTTTTG-------------------------T---AA----ACCGCAATA----------ACT----TAA-A-T-----CTTCATGATATTTT--ACA-T--TACACA---------AGGTAGTGTC-ATATCATTTGATAGCTT-GAGGCATAATGACAATATTaccatt
gi|9 : gaaaATT--TTCA---GTCCCGATATGT----T-TTCTTCTTTTT--CTTTA--GTAAAATAAACC--TCTATAAACCAGAA----------------------A------CCTGACAAATTTCAGCATTTTCTAT--GTATC-TGT-GT------GCAACGAAAAT----CCTCCTTAAACCGGAATTATT----TGATA-T-----TTTCTTGATTTTT--AACA-T--TAAACA---------AGGTGGTGTC-ATATCAATTGATAACTTTGAGGCATAATTGTAAGATTATGCTGCCACC-TTTTATTAAGTGTC
Alignments
lowQualScore : 111111111111111 11111 1111111111 1111 111111111
lowQualScore : 1 2 6666 33 1 99999 2 555 44 2 33 4 0 5 888888 888888 2 4 33 0 000000000000000 444 2 4 11 00000 6666666666 1111 2 33 111111111 6 44 0 3 3 3 5 4
lowQualScore : . . .... .. . ..... . ... .. . .. . . . ...... ...... . . .. . ............... ... . . .. ..... .......... .... . .. ......... . .. . . . . . .
lowQualScore : 2 3 5555 99 7 99999 9 888 22 4 99 1 1 0 222222 222222 1 6 99 1 000000000000000 777 7 3 77 55555 9999999999 1111 9 99 444444444 2 55 4 3 7 7 5 4
consensus : CCTCCGTAAACCGGACACTCTATAAACCGGAATACTC----TATAAACCGTGCATT--TTCAAAAGTCCCGAAAATN----T-TCCTTCTTTTT--CTATA--GTAGAATAAACC--TCTATAAACCGGAACCTCTCTATTC------CGGAAA------CCGGACGAATTTCAGCAATTTTTGT--GTATT-TTT-GT------ACATT---AATT-TACCTCCATAAACCGGAACAACT----TAATN-T-----CTTCTTGATTTTTT-GACA-T--TACACA---------AGGTAGTGTC-ATATCAANCGATAGCTT-GAGGCATAATTGCAAGATTCGGCTGCCACC-TTTTATCAAATGTC
Reference ( family-1360 ) : CCTCCGTAAACCGGACACTCTATAAACCGGAATACTC----TATAAACCGTGCATT--TTCAAAAGTCCCGAAAATN----T-TCCTTCTTTTT--CTATA--GTAGAATAAACC--TCTATAAACCGGAACCTCTCTATTC------CGGAAA------CCGGACGAATTTCAGCAATTTTTGT--GTATT-TTT-GT------ACATT---AATT-TACCTCCATAAACCGGAACAACT----TAATN-T-----CTTCTTGATTTTTT-GACA-T--TACACA---------AGGTAGTGTC-ATATCAANCGATAGCTT-GAGGCATAATTGCAAGATTCGGCTGCCACC-TTTTATCAAATGTC
gi|1 : CCTCCGTACACCGGACATTCTGTAAACCGAAGTACTC----TATAAACTGTGCTTT--TTCAAAAGTCCCGAAAATG----T-TCGTTCCTTTT--GAATA--GTGCAATAAACC--TCTATAAACAGGAATCTCTCTATTC------CAGAAA------CCAGACAACTTTTGGTCATTTTTGT--GCACA-TTT-AA------ACAAT---AAAA-TACCTCTTTAAACCGGAACAAC------AAT----------------TTATTT-GACA-A--TACACA---------AGGTAGTGTCAATGTTTGCCAATAGTTC-AAGGTGAAATTGC
gi|10 : atgtaaCCTCTATAAACCAAACACTTTATAAACCGGAATACTCAGTCTATATATCGTGCAAT--TTCTAAAATATAAAAAATAAATTT-TCCTTCTTTTT--ATATT--GT-GAATAAACC--T---------------------TTT------CGGAAA------CAGGATATAATTCAGCAATTTTTGT--GT--T-TTT-AT------ACATT---AATT-TACCATAGTAAACTGGAAAAACA----TAATA-T-----CTTCTTGATT------ACG-T--T--------------AGATAGTGTC-AAATcaattgccaaacaggtattgtgtgtcattgtttacccaatcagctgtgcatgttttatctacataaatgtgacaatcgcctaccttgtggtcattggttaaataataaaggtaa
gi|11 : aaCCGGACACTTTATGAACCGGAATTCTC----TATAAAATGTGCATT--TTCAAAAGTCCCGAAAATG----T-TCCTTTT-----------------AATAAACC--TCTATAAACCGGAACCTCTCTATTC------CGGAAA------CCGGATAAATTTCAGCAATTTCAGT----------------------ATT---AATT-TACCT---TAAATCggtat
gi|12 : CATT--TTTAAAACTCCTGAAAACT----T-TCCTTCATTTT--CTATA--GCATAATAAACC--T--AAAAA----AA--------------------AAA------TCTGACAAATTATAGCAATTTTTGT--GTACT-TT----------ACATT---AATT-TACCTCTATAAACTGAAGCTAC-----TGATA-T-----CTTaattttttttaaatataccataaggtattattatgttt
gi|13 : aaatctccgtacacaTTAGCAGTTTTTGT--G-ATTGTTT-GT------TCATT-----TTCTACTTCCATCAACCGGAATAACT----TGATG-T---------TTGACATT----ACA-T--TACACA---------AGGTAGTGCC-ATATCAATTTATAGCCT-TGGGCATCATTGCAAGATTTAGCTGCCACA-TTATATCAgtat
gi|14 : AGAATAAACA--TCTATAAATCTGAACCGCCCTATTC------TAGAAA------CCGGACAAATTTCAG-AATTTTTTTTTGTATT-TTT-GT------ACATT---AATT-TACCTCTATAATCTTGAATAGTT----TAATC-T-----TTTGTTTATTTATT-GACA-T--TACACA---------A
gi|15 : T------ACATC---AATT-TTTCTC-ATAAACTGGAATAACT----TAATCCT-----CATCTTGGTTTTTTTGACAAT--TAGACATGGTACTGAAGGTAGTGTC-ATATCAACAGACAGC----AGGC----TTG-AGGCTTTGGCTTCCACC-TTTTATCAAATGTCa
gi|16 : AATACTC----TATTAACCGTGCTTT--TTTAAAAGTTCCGAAAATG----T-TTGTTCTTGTT--ATATA--GTGCAATAAACC--TCTATAAACCGGGACCTCTCTATTC------TGAAAA------CCGGACAAa
gi|17 : aCTCTGTGAACTGGACACT--ATAAATCGGAATACTC----TATAAACCGTGTATT--TTCAAAAGTCCTGAAAATC----TGTCCTc
gi|18 : aatCTTCCGCAAAGCAGACACTCTATTAACCGGAATGCAC----TATAAACTGTGCTCT--TTTAAAAGTCCTGAAAATT----T-TTCATCTTTTT--Cggccattgtgtgaaggcataa
gi|19 : aaaTTA-GACA-TGGTACTGA---------AGGTAGTGTC-ATATCAACAGACAGC----AGGC----TTG-AGGCTTTGGCTGCCACC-TTTTATCAAATGTC
gi|2 : CTTCCGCAAACCGGACACTCTCTAATACGGAATACAC----TATAAACCGTGCTTTCTTTTAAAAATGCCGAAAGT-----T-TCGTTCTTTTT--CTATA--GTGCAATAAACC--TCTATAAACCGGAACTTCCCTTTTC------CGGAAA------CCG------TT----CAATTTTTGG--GCAGT-TTT-GTGTATAAACAAT---AAAT-TACCTCAATAAACCGGAGCAAC-------ATT-T-------------TTTTTT-GACA-A--TACACA---------AGGTAGTGTCAATATTTGCCGATAGCTC-GAGGTGTAATTGCAA-ATT--GCCGACACat
gi|20 : CCTCCGTAAACCGGATCCTCTAAAAACCGGAATATTC----TATAAAaggtgtcgtgtgtcattgtttatccaatcagcggtgcgtgttttatctacataagtgtgacaatcgcctaccttgcggcaaccgatgcaacaataacggtaa
gi|3 : cagtgaaaATACTTTATAAACCAGAATACTC----TATAAACCGACCATT--TTCAAAAATCCCGAAAATT----T-TCCTTCTTTTT--TTACA--GTAAAATGAACC--TCAATAAACCGGAACCTCTCTATTC------CGGAAG------CTGGACAAATACTAGCTTTTTTTGT--GTATT-TTT-GT------ACATT---AAAA-TACTTCCCTTATCTGGAGCAATTTGCATAATA-TGATAGTATCTTGATTTTTT-GACA-T--TATACA---------AGGTAGTGCA-ATATCAATTGATAGCTT-GAGGCATAATTGTAAGATTTGTCTGCCACCTTTTTCCCAAATTTC
gi|4 : aaaCCTCTGTAAACCGGACACTCTATAAACAGGAATACTC----TATAAACCGTGCATT--TTCAAAAGTGCTGAAAATT----T-TCCTTCTTTTT--CTATA--GTAGAATAAACC--TCTATAAACCGGAATCTCTCAATTC------TGGAAA------CCGAACAAACTTCAGCAATTTTTGT--GTATT-TTT-GT------ACATT---AATT-TACCTCTATAAACCGGAGCTACT----TGATA-T-----ATTCTGGATTTTTT-TCCA-C--TACACA---------AGGTAGTGCC-ATATCAATCGATAGCTT-GAGGCATAATTGTAAGTTTTGGCTGCCACT-TTTGATCAAATGTCatt
gi|5 : CCTCCGTAAACCGGATCCTCTAAAAACCGGAATATTC----TATAAACCGCGCAAT--TTCAAAAGTCCAAAAAATG----C-TCCTTCTCTTT---TATAATGTAGAATAAACC--TTTGTAAACCGGAACCTCTCTATTC------CGGAAA------ACGGACGGATTTCAGCA-TTTTTGT--GTAAT-TTT-GT------ACATT---AATT-TACCTCCATAAACCGGAATTACT----TATTC-T-----CTTCTTGATTTT-T-GACA-T--TTCACA---------AGGTAGTGTC-ATATCAAATGATAGCTT-GAGGCATAGTTGTAAGATCCGACTGCTACC-TTT
gi|6 : aCCTCTGTAAACCGGGCTCTATATAAACCGGAATACTC----TATAAACCACGTACT--TTTAAA-GTTCAGAAAATG----T-TCCTT---TTT--CTACT--GTAGAATAGACC--TCTGTATAGTGGAATCTATCTATTC------CGGAAA------ACGGACGGATTTCAGCA---TTCGT--GTA----------------CATT---AATT-AACCTCCATCAACCGAAATAACT----TAATC-C-----CTTCTTAATTTT-T-GACA-T--TACACA---------AGATATTGTC-ATATCAAATGATAACTT-GAGGCATAGTTGCATGATTCGACTTCCACC-TTTTATCAAAc
gi|7 : gaaa--CTATA---TAAAATGGACTATTCTATAAACTG----CTCACT-TTCAAAGTTCAGAAAATGTTCCTGGATGGATGTCAGCATTTTTTGT--GTATT-TTTTGT------ACATT---AATT-TACCTCCATAAACCGGAATAACC----TAATT-T-------TCTTGATTTTG--GACA-T--TACACA---------AGCCAGTGTC-ATATCAAATGATAGCTT-GAGGACTAGTATCAAGATTCGACTGCCACC-TTTTTTCAAATagcc
gi|8 : gtgaaacgtccgtaaaccggaccCCTCTGTAAACCGGAC-----------TGGAAGACTC----TATAAAC--TGCATT--ATCAGAAGTCCAGATAATG----T-GCTTTCTTTTTAACTATT--GTAGCATAAACC---CTGTAAACCGAAACCTCTCT--CC------TGGAAA------CCGGAAGAATTTCATCAATTTTTG-------------------------T---AA----ACCGCAATA----------ACT----TAA-A-T-----CTTCATGATATTTT--ACA-T--TACACA---------AGGTAGTGTC-ATATCATTTGATAGCTT-GAGGCATAATGACAATATTaccatt
gi|9 : gaaaATT--TTCA---GTCCCGATATGT----T-TTCTTCTTTTT--CTTTA--GTAAAATAAACC--TCTATAAACCAGAA----------------------A------CCTGACAAATTTCAGCATTTTCTAT--GTATC-TGT-GT------GCAACGAAAAT----CCTCCTTAAACCGGAATTATT----TGATA-T-----TTTCTTGATTTTT--AACA-T--TAAACA---------AGGTGGTGTC-ATATCAATTGATAACTTTGAGGCATAATTGTAAGATTATGCTGCCACC-TTTTATTAAGTGTC
blockSeqs : A T AGTC CT A AAATT G AAC AT G AT C A AAAGTT ATGTTC A A TT GTTTTGTGTATAA GAA C A AA TTGCA ATGATAGTA TTTG A GG TGGTACTGA A TT T A C T T
blockSeqs : A T . . C G . A . T . C A . . A A . TTGTTTGT . . T CT A CCTCA TTG . . . . CA . G C T .
blockSeqs : A C . . T T . C . G . C A . . A A . TTTTTTGT . . C TA T ATCT TAG . . . . CA . A T T .
blockSeqs : A C . . C G . A . C . C T . . A G . TTTTTGT . . T TA T ATCT TTG . . . . CC . A T T .
blockSeqs : A C . . T C . C . C . C A . . A A . TTTTTGT . . A TA T CTTT TTG . . . . TT . A T C .
blockSeqs : C T . . T T . C . A . T A . . A A . TTTTTGT . . C CA T ATAT TTT . . . . TC . A C C .
blockSeqs : A C . . C T . T . G . C A . . A T . ATTTTGT . . T CA T CTCT TG . . . . AT . C C C .
blockSeqs : A C . . C T . C . G . T A . . G A . TCTGTGT . . C CT T CCCT TG . . . . AT . A C A .
blockSeqs : C A . . T G . C . G . C . . . G T . TTTTAT . . C TT C ATCT GG . . . . AT . A T .
blockSeqs : T . . . A G . C . A . . . . . G A . CTTT . . C TA T ATTT TT . . . . TT . . .
blockSeqs : . . . . A G . C . G . . . . . G T . . . . A TA T GT TA . . . . TT . . .
blockSeqs : . . A T . . . A . . . . . A . . . . . C TT . TT . . . . .
blockSeqs : . C . . . . . . . . . . . . . . . . . . TT . . . .
blockSeqs : . . .
blockSeqCons : T**** ATCT****** TTG*
originalCons : CCTCCGTAAACCGGACACTCTATAAACCGGAATACTC----TATAAACCGTGCATT--TTCAAAAGTCCCGAAAATN----T-TCCTTCTTTTT--CTATA--GTAGAATAAACC--TCTATAAACCGGAACCTCTCTATTC------CGGAAA------CCGGACGAATTTCAGCAATTTTTGT--GTATT-TTT-GT------ACATT---AATT-TACCTCCATAAACCGGAACAACT----TAATN-T-----CTTCTTGATTTTTT-GACA-T--TACACA---------AGGTAGTGTC-ATATCAANCGATAGCTT-GAGGCATAATTGCAAGATTCGGCTGCCACC-TTTTATCAAATGTC
finalCons : CCTCCGTAAACCGGACACTCTATAAACCGGAATACTC----TATAAACCGTGCATT--TTCAAAAGTCCCGAAAATN----T-TCCTTCTTTTT--CTATA--GTAGAATAAACC--TCTATAAACCGGAACCTCTCTATTC------CGGAAA------CCGGACGAATTTCAGCAATTTTTGT--GTATT-TTT-GT------ACATT---AATT-TACCTCCATAAACCGGAACAACT----TAATATCT------TCTTGATTTTTTG-ACA-T--TACACA---------AGGTAGTGTC-ATATCAANCGATAGCTT-GAGGCATAATTGCAAGATTCGGCTGCCACC-TTTTATCAAATGTC
Alignments
lowQualScore : 111111111111111 11111 111111111 1111 111111111
lowQualScore : 1 2 6666 33 1 99999 2 555 44 2 33 4 0 5 888888 888888 2 4 33 0 000000000000000 444 2 4 11 00000 444444444 1111 2 33 111111111 6 44 0 3 3 3 5 4
lowQualScore : . . .... .. . ..... . ... .. . .. . . . ...... ...... . . .. . ............... ... . . .. ..... ......... .... . .. ......... . .. . . . . . .
lowQualScore : 2 3 5555 99 7 99999 9 888 22 4 99 1 1 0 222222 222222 1 6 99 1 000000000000000 777 7 3 77 55555 333333333 1111 9 99 444444444 2 55 4 3 7 7 5 4
consensus : CCTCCGTAAACCGGACACTCTATAAACCGGAATACTC----TATAAACCGTGCATT--TTCAAAAGTCCCGAAAATN----T-TCCTTCTTTTT--CTATA--GTAGAATAAACC--TCTATAAACCGGAACCTCTCTATTC------CGGAAA------CCGGACGAATTTCAGCAATTTTTGT--GTATT-TTT-GT------ACATT---AATT-TACCTCCATAAACCGGAACAACT----TAATA-T-----CTTCTTGATTTTTT-GACA-T--TACACA---------AGGTAGTGTC-ATATCAANCGATAGCTT-GAGGCATAATTGCAAGATTCGGCTGCCACC-TTTTATCAAATGTC
Reference ( family-1360 ) : CCTCCGTAAACCGGACACTCTATAAACCGGAATACTC----TATAAACCGTGCATT--TTCAAAAGTCCCGAAAATN----T-TCCTTCTTTTT--CTATA--GTAGAATAAACC--TCTATAAACCGGAACCTCTCTATTC------CGGAAA------CCGGACGAATTTCAGCAATTTTTGT--GTATT-TTT-GT------ACATT---AATT-TACCTCCATAAACCGGAACAACT----TAATA-T-----CTTCTTGATTTTTT-GACA-T--TACACA---------AGGTAGTGTC-ATATCAANCGATAGCTT-GAGGCATAATTGCAAGATTCGGCTGCCACC-TTTTATCAAATGTC
gi|1 : CCTCCGTACACCGGACATTCTGTAAACCGAAGTACTC----TATAAACTGTGCTTT--TTCAAAAGTCCCGAAAATG----T-TCGTTCCTTTT--GAATA--GTGCAATAAACC--TCTATAAACAGGAATCTCTCTATTC------CAGAAA------CCAGACAACTTTTGGTCATTTTTGT--GCACA-TTT-AA------ACAAT---AAAA-TACCTCTTTAAACCGGAACAAC------AAT----------------TTATTT-GACA-A--TACACA---------AGGTAGTGTCAATGTTTGCCAATAGTTC-AAGGTGAAATTGC
gi|10 : atgtaaCCTCTATAAACCAAACACTTTATAAACCGGAATACTCAGTCTATATATCGTGCAAT--TTCTAAAATATAAAAAATAAATTT-TCCTTCTTTTT--ATATT--GT-GAATAAACC--T---------------------TTT------CGGAAA------CAGGATATAATTCAGCAATTTTTGT--GT--T-TTT-AT------ACATT---AATT-TACCATAGTAAACTGGAAAAACA----TAATA-T-----CTTCTTGATT------ACG-T--T--------------AGATAGTGTC-AAATcaattgccaaacaggtattgtgtgtcattgtttacccaatcagctgtgcatgttttatctacataaatgtgacaatcgcctaccttgtggtcattggttaaataataaaggtaa
gi|11 : aaCCGGACACTTTATGAACCGGAATTCTC----TATAAAATGTGCATT--TTCAAAAGTCCCGAAAATG----T-TCCTTTT-----------------AATAAACC--TCTATAAACCGGAACCTCTCTATTC------CGGAAA------CCGGATAAATTTCAGCAATTTCAGT----------------------ATT---AATT-TACCT---TAAATCggtat
gi|12 : CATT--TTTAAAACTCCTGAAAACT----T-TCCTTCATTTT--CTATA--GCATAATAAACC--T--AAAAA----AA--------------------AAA------TCTGACAAATTATAGCAATTTTTGT--GTACT-TT----------ACATT---AATT-TACCTCTATAAACTGAAGCTAC-----TGATA-T-----CTTaattttttttaaatataccataaggtattattatgttt
gi|13 : aaatctccgtacacaTTAGCAGTTTTTGT--G-ATTGTTT-GT------TCATT-----TTCTACTTCCATCAACCGGAATAACT----TGATG-T---------TTGACATT----ACA-T--TACACA---------AGGTAGTGCC-ATATCAATTTATAGCCT-TGGGCATCATTGCAAGATTTAGCTGCCACA-TTATATCAgtat
gi|14 : AGAATAAACA--TCTATAAATCTGAACCGCCCTATTC------TAGAAA------CCGGACAAATTTCAG-AATTTTTTTTTGTATT-TTT-GT------ACATT---AATT-TACCTCTATAATCTTGAATAGTT----TAATC-T-----TTTGTTTATTTATT-GACA-T--TACACA---------A
gi|15 : T------ACATC---AATT-TTTCTC-ATAAACTGGAATAACT----TAATCCT-----CATCTTGGTTTTTTTGACAAT--TAGACATGGTACTGAAGGTAGTGTC-ATATCAACAGACAGC----AGGC----TTG-AGGCTTTGGCTTCCACC-TTTTATCAAATGTCa
gi|16 : AATACTC----TATTAACCGTGCTTT--TTTAAAAGTTCCGAAAATG----T-TTGTTCTTGTT--ATATA--GTGCAATAAACC--TCTATAAACCGGGACCTCTCTATTC------TGAAAA------CCGGACAAa
gi|17 : aCTCTGTGAACTGGACACT--ATAAATCGGAATACTC----TATAAACCGTGTATT--TTCAAAAGTCCTGAAAATC----TGTCCTc
gi|18 : aatCTTCCGCAAAGCAGACACTCTATTAACCGGAATGCAC----TATAAACTGTGCTCT--TTTAAAAGTCCTGAAAATT----T-TTCATCTTTTT--Cggccattgtgtgaaggcataa
gi|19 : aaaTTA-GACA-TGGTACTGA---------AGGTAGTGTC-ATATCAACAGACAGC----AGGC----TTG-AGGCTTTGGCTGCCACC-TTTTATCAAATGTC
gi|2 : CTTCCGCAAACCGGACACTCTCTAATACGGAATACAC----TATAAACCGTGCTTTCTTTTAAAAATGCCGAAAGT-----T-TCGTTCTTTTT--CTATA--GTGCAATAAACC--TCTATAAACCGGAACTTCCCTTTTC------CGGAAA------CCG------TT----CAATTTTTGG--GCAGT-TTT-GTGTATAAACAAT---AAAT-TACCTCAATAAACCGGAGCAAC---------A-T-----TT------TTTTTT-GACA-A--TACACA---------AGGTAGTGTCAATATTTGCCGATAGCTC-GAGGTGTAATTGCAA-ATT--GCCGACACat
gi|20 : CCTCCGTAAACCGGATCCTCTAAAAACCGGAATATTC----TATAAAaggtgtcgtgtgtcattgtttatccaatcagcggtgcgtgttttatctacataagtgtgacaatcgcctaccttgcggcaaccgatgcaacaataacggtaa
gi|3 : cagtgaaaATACTTTATAAACCAGAATACTC----TATAAACCGACCATT--TTCAAAAATCCCGAAAATT----T-TCCTTCTTTTT--TTACA--GTAAAATGAACC--TCAATAAACCGGAACCTCTCTATTC------CGGAAG------CTGGACAAATACTAGCTTTTTTTGT--GTATT-TTT-GT------ACATT---AAAA-TACTTCCCTTATCTGGAGCAATTTGCATAATA-TGATAGTATCTTGATTTTTT-GACA-T--TATACA---------AGGTAGTGCA-ATATCAATTGATAGCTT-GAGGCATAATTGTAAGATTTGTCTGCCACCTTTTTCCCAAATTTC
gi|4 : aaaCCTCTGTAAACCGGACACTCTATAAACAGGAATACTC----TATAAACCGTGCATT--TTCAAAAGTGCTGAAAATT----T-TCCTTCTTTTT--CTATA--GTAGAATAAACC--TCTATAAACCGGAATCTCTCAATTC------TGGAAA------CCGAACAAACTTCAGCAATTTTTGT--GTATT-TTT-GT------ACATT---AATT-TACCTCTATAAACCGGAGCTACT----TGATA-T-----ATTCTGGATTTTTT-TCCA-C--TACACA---------AGGTAGTGCC-ATATCAATCGATAGCTT-GAGGCATAATTGTAAGTTTTGGCTGCCACT-TTTGATCAAATGTCatt
gi|5 : CCTCCGTAAACCGGATCCTCTAAAAACCGGAATATTC----TATAAACCGCGCAAT--TTCAAAAGTCCAAAAAATG----C-TCCTTCTCTTT---TATAATGTAGAATAAACC--TTTGTAAACCGGAACCTCTCTATTC------CGGAAA------ACGGACGGATTTCAGCA-TTTTTGT--GTAAT-TTT-GT------ACATT---AATT-TACCTCCATAAACCGGAATTACT----TATTC-T-----CTTCTTGATTTT-T-GACA-T--TTCACA---------AGGTAGTGTC-ATATCAAATGATAGCTT-GAGGCATAGTTGTAAGATCCGACTGCTACC-TTT
gi|6 : aCCTCTGTAAACCGGGCTCTATATAAACCGGAATACTC----TATAAACCACGTACT--TTTAAA-GTTCAGAAAATG----T-TCCTT---TTT--CTACT--GTAGAATAGACC--TCTGTATAGTGGAATCTATCTATTC------CGGAAA------ACGGACGGATTTCAGCA---TTCGT--GTA----------------CATT---AATT-AACCTCCATCAACCGAAATAACT----TAATC-C-----CTTCTTAATTTT-T-GACA-T--TACACA---------AGATATTGTC-ATATCAAATGATAACTT-GAGGCATAGTTGCATGATTCGACTTCCACC-TTTTATCAAAc
gi|7 : gaaa--CTATA---TAAAATGGACTATTCTATAAACTG----CTCACT-TTCAAAGTTCAGAAAATGTTCCTGGATGGATGTCAGCATTTTTTGT--GTATT-TTTTGT------ACATT---AATT-TACCTCCATAAACCGGAATAACC----TAAT--------TTTCTTGATTTTG--GACA-T--TACACA---------AGCCAGTGTC-ATATCAAATGATAGCTT-GAGGACTAGTATCAAGATTCGACTGCCACC-TTTTTTCAAATagcc
gi|8 : gtgaaacgtccgtaaaccggaccCCTCTGTAAACCGGAC-----------TGGAAGACTC----TATAAAC--TGCATT--ATCAGAAGTCCAGATAATG----T-GCTTTCTTTTTAACTATT--GTAGCATAAACC---CTGTAAACCGAAACCTCTCT--CC------TGGAAA------CCGGAAGAATTTCATCAATTTTTG-------------------------T---AA----ACCGCAATA----------ACT----TAA-A-T-----CTTCATGATATTTT--ACA-T--TACACA---------AGGTAGTGTC-ATATCATTTGATAGCTT-GAGGCATAATGACAATATTaccatt
gi|9 : gaaaATT--TTCA---GTCCCGATATGT----T-TTCTTCTTTTT--CTTTA--GTAAAATAAACC--TCTATAAACCAGAA----------------------A------CCTGACAAATTTCAGCATTTTCTAT--GTATC-TGT-GT------GCAACGAAAAT----CCTCCTTAAACCGGAATTATT----TGATA-T-----TTTCTTGATTTTT--AACA-T--TAAACA---------AGGTGGTGTC-ATATCAATTGATAACTTTGAGGCATAATTGTAAGATTATGCTGCCACC-TTTTATTAAGTGTC