lowQualScore : 1111111111111111111111
lowQualScore : 33333333333333 33333333333333 1111 1 3333333333 1 111 1111 4444 1 22 1 0000000000000000000000 1
lowQualScore : 2 6 3 2 66666666666666 4 999 8 5 99999999999999 6 0 9999 2 44 1111111111 33 6 4 3 44 3 55 999 1 55 2 0000 4 0000 4 5 11 7 4444444444444444444444 6 7 6
lowQualScore : . . . . .............. . ... . . .............. . . .... . .. .......... .. . . . .. . .. ... . .. . .... . .... . . .. . ...................... . . .
lowQualScore : 5 0 0 5 00000000000000 2 000 1 7 99999999999999 0 8 7777 8 66 8888888888 33 1 9 1 22 6 77 222 8 55 1 8888 4 3333 0 0 00 0 0000000000000000000000 0 0 0
consensus : NNATNAATGTNTNTGTC-AATAAAAAA-TGTATAAA-TCTTGGTG-GCATG---CAAGA-AA-AGAATCGATCANGAGTATACNATTGA-GATAATGAGATTC-------CAACCCT-CGGTATCAC-TG--TTTT-GATAGGA--ACCTCGGC--AGAGCCTCGGNTCCG-ATAA-AAC---AANTGAACTTACATTTTTTTTACTAAATACCAATGATTGA--TTCCTTTATCTCA
Reference ( gi|5 ) : ATATCAACGTATGTGT--AATACCGCA-TGTACAGA-TCTTAGTG-GCATG---GAATATAA-ATAACCAATCAGGGGTATACTATTGA-GATAATGAGATTA-------CTACCCT-CGGTACCGC-TG--TGTT-GATAGGC--ACCTCGAC--AGAGCCTCGGTTTCA-ATAA-AACCGGAAATGACCTTATCTTATTTT-----AATACCAATGG--GACGTTCTTATATTTCA
gi|2 : ATAAATGTCTGTGTTGAAAAACGAA-T--ACAAA-TATTGTTG-GTATG---CAAGAGAA-AGACTCGATTACGTGCATACCATTGG-CACTATGGGACTT-------CAACCTT-CGGTATCAT-AG--ATTT-GGCAGAA--AACTCGAC--AGAGCATCGTTTTCG-AAAA-AA----AATTAAACTTACATTTTTTTTACTAAATACCAATGATTGA--TTCCTTTATCTCA
gi|4 : aaaatgcacgtgctaatatgacgtcatcctatcttagaatattgttaATCAATGTATTTGTC-AATAAAAAAATGTAAAAAATCTT---G-AC-CG---GTATACAAGAAAATTAATCA----------ATTGA-GATAAAGATATTC-------CGACACT-TGGTATCAC-TGTTTATT-AAT-GGA--GCCTTGCC--AGAACTTCAGATGTA-ATGA-AA
gi|7 : cacaatggaatgacatcattaccatattttcagaagatggtaa--AATACAACA-T-TATAG----CTGGTATGCATG----AACA----AGAATCAATAATGACTACACAATCAA-GATAATGGGAGTC-------AAACTCA-TGGTATCAC-TG--TTTT-GATAGGA--ACCattgttcaaactcgggttggcatgtccctatctcaaac
gi|1 : taatgcactgataaaatgtgtgcactataatgatgcaatttaagctactgtaaggtggttattcagcatattatttgacaaA-TATATAGA-T-TTGATT-GTATG---CAAGAAAA-AGAATCCACTAGGAGTATACAATCCA-GTTAATGAGATTC-------CAACGTT-TGGTATCTC-TG--TTTTCAATA-GCAAAACTCAGCAGAGAGCCTCGATCT---ATAAGAAC----AATGA
gi|8 : acgctaaggcagagataaaactcctgtggtataaaaatgcacatgctagtatgactgctatattcttacaagaagaaaattatgcaattgttaaaaacaaaAAA-TCTTAGTG-GCATG---TAAGAGAA-AGAATTGACCATAAGTATAGGATTGA-GATGATGAGACAA---------ACCCT-TAATATCaactaagggttggtatatctttaaccctaacccaatggccattaaagatatttatattccacactatagtatccctatttca
gi|12 : gtataacgtcatactactcttagaagatgtaaatctatgttagacagcaaatgacagctatgttgttattaagaaA-TTTTAGTG-GTATA---CAA---GA-AGAATCAGTTATGAGTATA----------TAATGAGATCATTTGATTCCAACCT-TGGCATCACTTT--TTTT-TATAGAA--ACCTata
gi|6 : -TTTTTGTG-GTATGCTAGAAAA-AA-AGAATTCATTAAGG--ATACAATTGA----AATGAGATTC-------CAACCCTGAGGTATCG---G--TGTT--ATAA-------TCGGC----AGTCTCTGATTGAGATAA-AA
gi|3 : taaaatgaacatgttagtgtatgatgtcatgctgttcatgaaatacagcacattccatgtatttgttttagaaaaaaaaaaagAATCAGTTGTAGAC-AGTAACGATAATGGGATTC-------CAA--CT-AGGTATCGC-TG--CTTT-GGTTGGA--ACCTCAAG--AGAGCTTatagtgaa
gi|17 : tctcatccttgagtcaagataaaattgacttgctaatgaaatacacattagtatgaaatcactttatgtttagaaaactgtatatcagtggatttgtgggggggaaaagtaaaaaaaacaataaactttggtatgcgagaaaaagTCATGACTATACAGCTGA-GATAGTGAGATTT-------ATACCCT-CCGTACTTC-TG--TTTC-TATAGGG--ACCtag
gi|14 : TATACTATTGA-TGTTGTGAGATTC-------CAATTCT-CGGTAAAAC-TG--TTTT-GATAGAA--ACCTCGGC--AAAGCCGAGGGTCAG-ATAA-A
gi|13 : ATACTATTGA-TGTTGTGAGATTC-------CAATTCT-CGGTAAAAC-TG--TTTT-GATAGAA--ACCTCGGC--AAAGCCGAGGGTCAG-AT-A-AACTGGActgg
gi|10 : ATTGG-GATAATGAGATTC-------AAATCCT-TGGTATCAC-GG--T-TT-AATGTGA--ACCTTTAC--AGAGCCTCAGTTCCA-ATGA-A
gi|9 : gACTGA-GATAATGAGATTT-------CAACCAT-CAGTATCAC-TG--TTTT-GATATG----------------GCCTCGGTTCCA-ATAA-Acacttaaaacctttggttggaacatcaatccttatctcc
gi|16 : agaaaattaaatatcaacA-------CCATCGT-CGGTATCAC-TG--TATT-AACAGAA--ACTTCGAC--AGGGTCTCCGTTCCA-ATAA-Agagagttttaaaaaaaacaaaaaacctctggttggaatttgcttatctcaacctacat
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): GACAAAAACCTTTAAGGCATGCATAAAAAAGAATTAATCATGATTACTGACAATTAAGTTAAGAGAATGAATGTTCAACCTTTGGTATCACTGCTTTGCAAGGAACC
Unaligned ( gi|15 ): AGTACGACGTCATCCTATTCCCACAAGATGGTTAACTGATGTTCAGAATATATGTATAAAACTTTGTGGTGTGCAAGAAAAAGA
Unaligned ( gi|18 ): CTGTTCAAAAAAAATATAGACAAATATAAAGAACCATCATGG
Unaligned ( gi|19 ): ACAACAGTAAAACATCAGGTTGGAATATCCCTATCTCA
Alignments
lowQualScore : 111 22222 22222222 1 2222 22222 11 22
lowQualScore : 1 000 88888 5 33333333 4 2 2 3 2 666 3 0 3 7 4 9 44 2 66666 2 22 2 33 2 2 1 55 44 1 33 4 0000 1 3 4 77777 88 77 4
lowQualScore : . ... ..... . ........ . . . . . ... . . . . . . .. . ..... . .. . .. . . . .. .. . .. . .... . . . ..... .. .. .
lowQualScore : 0 222 88888 7 22222222 0 3 3 6 5 444 6 9 6 3 6 4 22 1 77777 7 66 7 77 7 7 8 00 77 0 77 0 0000 0 0 0 00000 55 55 0
consensus : NNATCAATGTATTTGTT----AATAA-AAAA-CG--TATAAA-TCTTGGT-GGTATGC---A-AGA-A-AA-GAATCGATCATGAGTAT--ACAATTGAG-----ATAATGAGAT-TCCAACCCT-CGGTATCAC-TGTT--TT-GATAG-GAACCTCGGC--AGAGCCTC-GGTTCCGATAA-AAN---AANTGAACTTACNTTNTTTTTACTAAATACCAATGGTTGACGTTCCTNTATCTCA
Reference ( family-94 ) : NNATNAATGTNTNTGTC----AATAA-AAAA-TG--TATAAA-TCTTGGT-GGCATGC---A-AGA-A-AA-GAATCGATCANGAGTAT--ACNATTGAG-----ATAATGAGAT-TCCAACCCT-CGGTATCAC-TGTT--TT-GATAG-GAACCTCGGC--AGAGCCTC-GGNTCCGATAA-AAC---AANTGAACTTACATTTTTTTTACTAAATACCAATGATTGA--TTCCTTTATCTCA
gi|1 : ATGCAATTGTT----AAAAACAAAA-TA--TATAGA-T-TTGAT-TGTATGC---A-AGA-A-AAAGAATCCACTAGGAGTAT--ACAATCCAG-----TTAATGAGAT-TCCAACGTT-TGGTATCTC-TGTT--TTCAATAGCAAAACTCAGCAGAGAGCCTC--GATCT-ATAAGAAC---AATGAAACT
gi|10 : acgctaaggcagagataaaactcctgtggtataaaaatgcacatgctagtatgactgctatattcttacaagaagaaaattATTGGG-----ATAATGAGAT-TCAAATCCT-TGGTATCAC--GGT--TT-AATGT-GAACCTTTAC--AGAGCCTC-AGTTCCAATGA-Aaagggttggtatatctttaaccctaacccaatggccattaaagatatttatattccacactatagtatccctatttca
gi|11 : gAAA-CCTTTAA-GGCATGC---ATAAA-A-AA-GAATTAATCATGATTACTGACAATTAAGTTAAGAGAATGA-ATGTTCAACCTT-TGGTATCAC-TGCT--TT-GCAAG-GAACCcacttaaaacctttggttggaacatcaatccttatctcc
gi|12 : gacaaA-TTTTAGT-GGTATAC---A-AGA-A----GAATCAGTTATGAGTAT--ATAA-TGAG-----ATCATTTGAT-TCCAA-CCT-TGGCATCACTTTTT--TT-TATAG-AAACCT
gi|13 : AT--ACTATTGAT-----GTTGTGAGAT-TCCAATTCT-CGGTAAAAC-TGTT--TT-GATAG-AAACCTCGGC--AAAGCCGA-GGGTCAGATAA-A
gi|14 : TAT--ACTATTGAT-----GTTGTGAGAT-TCCAATTCT-CGGTAAAAC-TGTT--TT-GATAG-AAACCTCGGC--AAAGCCGA-GGGTCAGATAA-Actgga
gi|15 : A-TG--TATAAA-ACTTTGT-GGTGTGC---A-AGA-A-AA-ctgg
gi|16 : agtacgacgtcatcctattcccacaagatggttaactgatgttcagaatatT-CGGTATCAC-TGTA--TT-AACAG-AAACTTCGAC--AGGGTCTC-CGTTCCAATAA-Aaga
gi|17 : accatcgTCATGACTAT--ACAGCTGAG-----ATAGTGAGAT-TTATACCCT-CCGTACTTC-TGTT--TC-TATAG-GGACCtttgtcagacctta
gi|2 : ATAAATGTCTGTGT-------TGA-AAAA-CGAATACAAA-TATTGTT-GGTATGC---A-AGAGA-AA-GACTCGATTACGTGCAT--ACCATTGGC-----ACTATGGGAC-TTCAACCTT-CGGTATCAT-AGAT--TT-GGCAG-AAAACTCGAC--AGAGCATC-GTTTTCGA-AA-AAA---AATTAAACTTACATTTTTTTTACTAAATACCAATGATTGA--TTCCTTTATCTCA
gi|3 : aaaatgcacgtgctaatatgacgtcatcctatcttagaatattgttaAA-AAAA-CA---ATAAA-CTTTGGT----ATGC---G-AGA-A-AAAGAATCAGTT----GTAG--ACAGTAACG-----ATAATGGGAT-TCCAAC--T-AGGTATCGC-TGCT--TT-GGTTG-GAACCTCAAG--AGAGCTT
gi|4 : tctcatccttgagtcaagataaaattgacttgctaatgaaatacacattagtatgaaatcactttatgtttagaaaactgtatatcagtggatttgtgggggggaaaagtaaATCAATGTATTTGTC----AATAA-AAAAATG--TAAAAAATCTTGACCGGTATAC---A-AGA-A-AA----TTAATCA------------ATTGAG-----ATAAAGATAT-TCCGACACT-TGGTATCAC-TGTTTATT-AAT-G-GAGCCTTGCC--AGAACTTC-AGATGTAATGA-AAtag
gi|5 : cacaatggaatgacatcattaccatattttcagaagatggtaaATCAACGTATGTGT-----AATAC-CGCA-TG--TACAGA-TCTTAGT-GGCATGG---A-ATATA-AA-TAACCAATCAGGGGTAT--ACTATTGAG-----ATAATGAGAT-TACTACCCT-CGGTACCGC-TGTG--TT-GATAG-GCACCTCGAC--AGAGCCTC-GGTTTCAATAA-AACCGGAAATGACCTTATCTTATTTT-----AATACCAATGG--GACGTTCTTATATTTCAattgttcaaactcgggttggcatgtccctatctcaaac
gi|6 : atATGTATTTGTTTTAGAAAAA-AAAA--------AAG-TTTTTGT-GGTATGCTAGA-AAA-A-AA-GAATTCATTA--AGGAT--ACAATTGA--------AATGAGAT-TCCAACCCTGAGGTATCGG-TGTT------ATAA------TCGGC----AGTCTCTGATTGAGATAA-AAA---TAGTGAA
gi|7 : taaaatgaacatgttagtgtatgatgtcatgctgttcatgaaatacagcacattccT-GGTATGC---A-TGA-ACAA-GAATCAATAATGACTAC--ACAATCAAG-----ATAATGGGAG-TCAAACTCA-TGGTATCAC-TGTT--TT-GATAG-GAACC
gi|8 : taatgcactgataaaatgtgtgcactataatgatgcaatttaagctactgtaaggtggttattcagcatattatttgacaaaatacaacattatagcATGT---TGTT----ATTAA-GAAA---------AA-TCTTAGT-GGCATGT---A-AGAGA-AA-GAATTGACCATAAGTAT--AGGATTGAG-----ATGATGAGA---CAAACCCT-TAATATCA
gi|9 : gtataacgtcatactactcttagaagatgtaaatctatgttagacagcaaatgacagctACTGAG-----ATAATGAGAT-TTCAACCAT-CAGTATCAC-TGTT--TT-GATAT-G--------------GCCTC-GGTTCCAATAA-Ata
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): CTGTTCAAAAAAAATATAGACAAATATAAAGAACCATCATGG
Unaligned ( gi|19 ): ACAACAGTAAAACATCAGGTTGGAATATCCCTATCTCA
Alignments
lowQualScore : 44444444444444444444444444444444444 1 11111 22222 11 11
lowQualScore : 5 00000000000000000000000000000000000 3 444 999 3 666 3 0 3 7 4 77 44 1 66666 2 22 2 33 2 2 1 55 4 0 0 66666 1 1 1 77777 88 77 1
lowQualScore : . ................................... . ... ... . ... . . . . . .. .. . ..... . .. . .. . . . .. . . . ..... . . . ..... .. .. .
lowQualScore : 0 00000000000000000000000000000000000 6 000 777 6 444 6 9 6 3 6 00 22 8 77777 7 66 7 77 7 7 8 00 0 7 5 77777 0 0 0 00000 55 55 0
consensus : NNATCAACGTAT-TTGT------------T----AANAA-AAAA-CG--TACAA-A-TCTTNG-T-GGTATGC---A-AGA-A-AA-GAATCAATCAT-GAGTAT--ACAATTGAG-----ATAATGAGAT-TCCAACCCT-CGGTATCAC-TGTT--TT-GATAG-GAACCTCGGC--AGAGCCTC-GGTTCCGATAAAA---ANAGTGAACTTACNTTNTTTTTACTAAATACCAATGGTTGACGTTCCTNTATCTCA
Reference ( family-94 ) : NNATCAATGTAT-TTGT------------T----AATAA-AAAA-CG--TATAA-A-TCTTGG-T-GGTATGC---A-AGA-A-AA-GAATCGATCAT-GAGTAT--ACAATTGAG-----ATAATGAGAT-TCCAACCCT-CGGTATCAC-TGTT--TT-GATAG-GAACCTCGGC--AGAGCCTC-GGTTCCGATAAAA---NAANTGAACTTACNTTNTTTTTACTAAATACCAATGGTTGACGTTCCTNTATCTCA
gi|1 : ATGCAA-TTGT------------T----AAAAACAAAA-TA--TATAG-A-T-TTGA-T-TGTATGC---A-AGA-A-AAAGAATCCACTAG-GAGTAT--ACAATCCAG-----TTAATGAGAT-TCCAACGTT-TGGTATCTC-TGTT--TTCAATAGCAAAACTCAGCAGAGAGCCTC-GAT--CTATAAGA---ACAATGAA
gi|10 : acgctaaggcagagataaaactcctgtggtataaaaatgcacatgctagtatgactgctatattcttacaagaagaaaattATTGGG-----ATAATGAGAT-TCAAATCCT-TGGTATCAC--GGT--TT-AATGT-GAACCTTTAC--AGAGCCTC-AGTTCCAATGAAactaagggttggtatatctttaaccctaacccaatggccattaaagatatttatattccacactatagtatccctatttca
gi|11 : gAA-A-CCTTTA-A-GGCATGC---ATAAA-A-AA-GAATTAATCAT-GATTACTGACAATTAAGTTAAGAGAATGA-ATGTTCAACCTT-TGGTATCAC-TGCT--TT-GCAAG-GAACCcacttaaaacctttggttggaacatcaatccttatctcc
gi|12 : gacaa-A-TTTTAG-T-GGTATAC---A-AGA-A----GAATCAGTTAT-GAGTAT--ATAA-TGAG-----ATCATTTGAT-TCCAA-CCT-TGGCATCACTTTTT--TT-TATAG-AAACCT
gi|13 : AT--ACTATTGAT-----GTTGTGAGAT-TCCAATTCT-CGGTAAAAC-TGTT--TT-GATAG-AAACCTCGGC--AAAGCCGA-GGGTCAGATAAA
gi|14 : TAT--ACTATTGAT-----GTTGTGAGAT-TCCAATTCT-CGGTAAAAC-TGTT--TT-GATAG-AAACCTCGGC--AAAGCCGA-GGGTCAGATAAActgga
gi|15 : TGT------------T----CAGAA-TATA-TG--TATAA-A-ACTTTG-T-GGTGTGC---A-AGA-A-AA-ctgg
gi|16 : agtacgacgtcatcctattcccacaagatggttaactgaT-CGGTATCAC-TGTA--TT-AACAG-AAACTTCGAC--AGGGTCTC-CGTTCCAATAAAaga
gi|17 : accatcgTCAT-GACTAT--ACAGCTGAG-----ATAGTGAGAT-TTATACCCT-CCGTACTTC-TGTT--TC-TATAG-GGACCtttgtcagacctta
gi|2 : ATAAATGTCT-GTGT------------T----GA----AAAA-CGAATACAA-A-TATTGT-T-GGTATGC---A-AGAGA-AA-GACTCGATTAC-GTGCAT--ACCATTGGC-----ACTATGGGAC-TTCAACCTT-CGGTATCAT-AGAT--TT-GGCAG-AAAACTCGAC--AGAGCATC-GTTTTCGA-AAAA---AAATTAAACTTACATTTTTTTTACTAAATACCAATGATTGA--TTCCTTTATCTCA
gi|3 : aaaatgcacgtgctaatatgacgtcatcctatcttagaatattgttaATCAGTGGAT-TTGTGGGGGGGAAAAGT----AA-AA-AAAA-CA---ATAA-A--CTT---T-GGTATGC---G-AGA-A-AAAGAATCAGTT-----GTAG--ACAGTAACG-----ATAATGGGAT-TCCAAC--T-AGGTATCGC-TGCT--TT-GGTTG-GAACCTCAAG--AGAGCTT
gi|4 : tctcatccttgagtcaagataaaattgacttgctaatgaaatacacattagtatgaaatcactttatgtttagaaaactgtatATCAATGTAT-TTGT------------C----AATAA-AAAAATG--TAAAA-AATCTTGA-CCGGTATAC---A-AGA-A-AA----TTAATCA-------------ATTGAG-----ATAAAGATAT-TCCGACACT-TGGTATCAC-TGTTTATT-AAT-G-GAGCCTTGCC--AGAACTTC-AGATGTAATGAAA---tag
gi|5 : cacaatggaatgacatcattaccatattttcagaagatggtaaATCAACGTAT-GTGT-----------------AATAC-CGCA-TG--TACAG-A-TCTTAG-T-GGCATGG---A-ATATA-AA-TAACCAATCAG-GGGTAT--ACTATTGAG-----ATAATGAGAT-TACTACCCT-CGGTACCGC-TGTG--TT-GATAG-GCACCTCGAC--AGAGCCTC-GGTTTCAATAAAACCGGAAATGACCTTATCTTATTTT-----AATACCAATGG--GACGTTCTTATATTTCAattgttcaaactcgggttggcatgtccctatctcaaac
gi|6 : atTCCATGTAT-TTGT------------TTTAGAAAAA-AAAA--------AA-G-TTTTTG-T-GGTATGCTAGA-AAA-A-AA-GAAT---TCATTAAGGAT--ACAATTGA--------AATGAGAT-TCCAACCCTGAGGTATCGG-TGTT------ATAA------TCGGC----AGTCTCTGATTGAGATAAAA---ATAGTGAA
gi|7 : taaaatgaacatgttagtgtatgatgtcatgctgttcatgaaatacagcacatTCAGCATAT-TATT------------T----GACAA-AA-------TACAACA-TTATAGCT-GGTATGC---A-TGA-ACAA-GAATCAATAAT-GACTAC--ACAATCAAG-----ATAATGGGAG-TCAAACTCA-TGGTATCAC-TGTT--TT-GATAG-GAACC
gi|8 : taatgcactgataaaatgtgtgcactataatgatgcaatttaagctactgtaaggtggttatTATGTTGT------------T----ATTAA-GAAA---------A-A-TCTTAG-T-GGCATGT---A-AGAGA-AA-GAATTGACCAT-AAGTAT--AGGATTGAG-----ATGATGAGA---CAAACCCT-TAATATCA
gi|9 : gtataacgtcatactactcttagaagatgtaaatctatgttagacagcaaatgacagcACTGAG-----ATAATGAGAT-TTCAACCAT-CAGTATCAC-TGTT--TT-GATAT-G--------------GCCTC-GGTTCCAATAAAG---AGAGTta
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): CTGTTCAAAAAAAATATAGACAAATATAAAGAACCATCATGG
Unaligned ( gi|19 ): ACAACAGTAAAACATCAGGTTGGAATATCCCTATCTCA
Alignments
lowQualScore : 1111 222222 1 111 22222 11 11
lowQualScore : 5 0000 5 4 2 555555 3 3 444 777 3 666 3 0 3 6 1 99 77 1 66666 2 22 2 33 2 2 1 55 4 0 0 111 1 99 1 1 77777 88 77 1
lowQualScore : . .... . . . ...... . . ... ... . ... . . . . . .. .. . ..... . .. . .. . . . .. . . . ... . .. . . ..... .. .. .
lowQualScore : 7 6666 3 4 0 222222 7 6 000 111 6 444 6 9 6 7 2 88 99 1 77777 7 66 7 77 7 7 8 00 0 7 5 777 0 22 0 0 00000 55 55 0
consensus : NNATCAACGTAT-TTGTT----AANAA-AAAA-CG--TACAA-A-TCTTNG-T-GGTATGC---A-AGA-A-AA-GAATCAATCA-TGAGTAT--ACAATTGAG-----ATAATGAGAT-TCCAACCCT-CGGTATCAC-TGTT--TT-GATAG-GAACCTCGGC--AGAGCCTC-GGTTCCGATAAAA---ANAGT--GAACTTACNTTNTTTTTACTAAATACCAATGGTTGACGTTCCTNTATCTCA
Reference ( family-94 ) : NNATCAACGTAT-TTGTT----AANAA-AAAA-CG--TACAA-A-TCTTNG-T-GGTATGC---A-AGA-A-AA-GAATCAATCA-TGAGTAT--ACAATTGAG-----ATAATGAGAT-TCCAACCCT-CGGTATCAC-TGTT--TT-GATAG-GAACCTCGGC--AGAGCCTC-GGTTCCGATAAAA---ANAGT--GAACTTACNTTNTTTTTACTAAATACCAATGGTTGACGTTCCTNTATCTCA
gi|1 : -TTGTT----AAAAACAAAA-TA--TATAG-A-T-TTGA-T-TGTATGC---A-AGA-A-AAAGAATCCACTA-GGAGTAT--ACAATCCAG-----TTAATGAGAT-TCCAACGTT-TGGTATCTC-TGTT--TTCAATAGCAAAACTCAGCAGAGAGCCTC-GAT--CTATAAGA---ACAAT--GAA
gi|10 : acgctaaggcagagataaaactcctgtggtataaaaatgcacatgctagtatgactgctatattcttacaagaagaaaattatgcaaATTGGG-----ATAATGAGAT-TCAAATCCT-TGGTATCAC--GGT--TT-AATGT-GAACCTTTAC--AGAGCCTC-AGTTCCAATGAAactaagggttggtatatctttaaccctaacccaatggccattaaagatatttatattccacactatagtatccctatttca
gi|11 : gAA-A-CCTTTA-A-GGCATGC---ATAAA-A-AA-GAATTAATCA-TGATTACTGACAATTAAGTTAAGAGAATGA-ATGTTCAACCTT-TGGTATCAC-TGCT--TT-GCAAG-GAACCcacttaaaacctttggttggaacatcaatccttatctcc
gi|12 : gacaa-A-TTTTAG-T-GGTATAC---A-AGA-A----GAATCAGTTA-TGAGTAT--ATAA-TGAG-----ATCATTTGAT-TCCAA-CCT-TGGCATCACTTTTT--TT-TATAG-AAACCT
gi|13 : AT--ACTATTGAT-----GTTGTGAGAT-TCCAATTCT-CGGTAAAAC-TGTT--TT-GATAG-AAACCTCGGC--AAAGCCGA-GGGTCAGATAAA
gi|14 : TAT--ACTATTGAT-----GTTGTGAGAT-TCCAATTCT-CGGTAAAAC-TGTT--TT-GATAG-AAACCTCGGC--AAAGCCGA-GGGTCAGATAAActgga
gi|15 : TGTT----CAGAA-TATA-TG--TATAA-A-ACTTTG-T-GGTGTGC---A-AGA-A-AA-ctgg
gi|16 : agtacgacgtcatcctattcccacaagatggttaactgaT-CGGTATCAC-TGTA--TT-AACAG-AAACTTCGAC--AGGGTCTC-CGTTCCAATAAAaga
gi|17 : accatcgTCA-TGACTAT--ACAGCTGAG-----ATAGTGAGAT-TTATACCCT-CCGTACTTC-TGTT--TC-TATAG-GGACCtttgtcagacctta
gi|2 : ATAAATGTCT-GTGTT----GA----AAAA-CGAATACAA-A-TATTGT-T-GGTATGC---A-AGAGA-AA-GACTCGATTA-CGTGCAT--ACCATTGGC-----ACTATGGGAC-TTCAACCTT-CGGTATCAT-AGAT--TT-GGCAG-AAAACTCGAC--AGAGCATC-GTTTTCGA-AAAA---AAATT--AAACTTACATTTTTTTTACTAAATACCAATGATTGA--TTCCTTTATCTCA
gi|3 : aaaatgcacgtgctaatatgacgtcatcctatcttagaatattgttaAAAA-AAAA-CA---ATAA-A--CTT---T-GGTATGC---G-AGA-A-AAAGAATCAGTT-----GTAG--ACAGTAACG-----ATAATGGGAT-TCCAAC--T-AGGTATCGC-TGCT--TT-GGTTG-GAACCTCAAG--AGAGCTT
gi|4 : tctcatccttgagtcaagataaaattgacttgctaatgaaatacacattagtatgaaatcactttatgtttagaaaactgtatatcagtggatttgtgggggggaaaagtATCAATGTAT-TTGTC----AATAA-AAAAATG--TAAAA-AATCTTGA-CCGGTATAC---A-AGA-A-AA----TTAATCA-------------ATTGAG-----ATAAAGATAT-TCCGACACT-TGGTATCAC-TGTTTATT-AAT-G-GAGCCTTGCC--AGAACTTC-AGATGTAATGAAA---ATTGTTCAAACTtag
gi|5 : cacaatggaatgacatcattaccatattttcagaagatggtaaATCAACGTAT-GTGT-----AATAC-CGCA-TG--TACAG-A-TCTTAG-T-GGCATGG---A-ATATA-AA-TAACCAATCA-GGGGTAT--ACTATTGAG-----ATAATGAGAT-TACTACCCT-CGGTACCGC-TGTG--TT-GATAG-GCACCTCGAC--AGAGCCTC-GGTTTCAATAAAACCGGAAAT--GACCTTATCTTATTTT-----AATACCAATGG--GACGTTCTTATATTTCAcgggttggcatgtccctatctcaaac
gi|6 : atTCCATGTAT-TTGTTTTAGAAAAA-AAAA--------AA-G-TTTTTG-T-GGTATGCTAGA-AAA-A-AA-GAAT---TCATTAAGGAT--ACAATTGA--------AATGAGAT-TCCAACCCTGAGGTATCGG-TGTT------ATAA------TCGGC----AGTCTCTGATTGAGATAAAA---ATAGT--GAA
gi|7 : taaaatgaacatgttagtgtatgatgtcatgctgttcatgaaatacagcacatTCAGCATAT-TATTT----GACAA-AA-------TACAACA-TTATAGCT-GGTATGC---A-TGA-ACAA-GAATCAATAA-TGACTAC--ACAATCAAG-----ATAATGGGAG-TCAAACTCA-TGGTATCAC-TGTT--TT-GATAG-GAACC
gi|8 : taatgcactgataaaatgtgtgcactataatgatgcaatttaagctactgtaaggtggttatTATGTTGTT----ATTAA-GAAA---------A-A-TCTTAG-T-GGCATGT---A-AGAGA-AA-GAATTGACCA-TAAGTAT--AGGATTGAG-----ATGATGAGA---CAAACCCT-TAATATCA
gi|9 : gtataacgtcatactactcttagaagatgtaaatctatgttagacagcaaatgacagcA-GAA--AATTA---AATATCAACA-CTGAG-----ATAATGAGAT-TTCAACCAT-CAGTATCAC-TGTT--TT-GATAT-G--------------GCCTC-GGTTCCAATAAAG---AGAGT--ta
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): CTGTTCAAAAAAAATATAGACAAATATAAAGAACCATCATGG
Unaligned ( gi|19 ): ACAACAGTAAAACATCAGGTTGGAATATCCCTATCTCA
Alignments
lowQualScore : 1111 222222 1 111 22222 11 11
lowQualScore : 5 0000 5 4 2 555555 3 3 444 777 3 666 3 0 3 6 1 99 77 1 66666 2 22 2 33 2 2 1 55 4 0 0 111 1 99 1 1 77777 88 77 1
lowQualScore : . .... . . . ...... . . ... ... . ... . . . . . .. .. . ..... . .. . .. . . . .. . . . ... . .. . . ..... .. .. .
lowQualScore : 7 6666 3 4 0 222222 7 6 000 111 6 444 6 9 6 7 2 88 99 1 77777 7 66 7 77 7 7 8 00 0 7 5 777 0 22 0 0 00000 55 55 0
consensus : NNATCAACGTAT-TTGTT----AANAA-AAAA-CG--TACAA-A-TCTTNG-T-GGTATGC---A-AGA-A-AA-GAATCAATCA-TGAGTAT--ACAATTGAG-----ATAATGAGAT-TCCAACCCT-CGGTATCAC-TGTT--TT-GATAG-GAACCTCGGC--AGAGCCTC-GGTTCCGATAAAA---ANAGT--GAACTTACNTTNTTTTTACTAAATACCAATGGTTGACGTTCCTNTATCTCA
Reference ( family-94 ) : NNATCAACGTAT-TTGTT----AANAA-AAAA-CG--TACAA-A-TCTTNG-T-GGTATGC---A-AGA-A-AA-GAATCAATCA-TGAGTAT--ACAATTGAG-----ATAATGAGAT-TCCAACCCT-CGGTATCAC-TGTT--TT-GATAG-GAACCTCGGC--AGAGCCTC-GGTTCCGATAAAA---ANAGT--GAACTTACNTTNTTTTTACTAAATACCAATGGTTGACGTTCCTNTATCTCA
gi|1 : -TTGTT----AAAAACAAAA-TA--TATAG-A-T-TTGA-T-TGTATGC---A-AGA-A-AAAGAATCCACTA-GGAGTAT--ACAATCCAG-----TTAATGAGAT-TCCAACGTT-TGGTATCTC-TGTT--TTCAATAGCAAAACTCAGCAGAGAGCCTC-GAT--CTATAAGA---ACAAT--GAA
gi|10 : acgctaaggcagagataaaactcctgtggtataaaaatgcacatgctagtatgactgctatattcttacaagaagaaaattatgcaaATTGGG-----ATAATGAGAT-TCAAATCCT-TGGTATCAC--GGT--TT-AATGT-GAACCTTTAC--AGAGCCTC-AGTTCCAATGAAactaagggttggtatatctttaaccctaacccaatggccattaaagatatttatattccacactatagtatccctatttca
gi|11 : gAA-A-CCTTTA-A-GGCATGC---ATAAA-A-AA-GAATTAATCA-TGATTACTGACAATTAAGTTAAGAGAATGA-ATGTTCAACCTT-TGGTATCAC-TGCT--TT-GCAAG-GAACCcacttaaaacctttggttggaacatcaatccttatctcc
gi|12 : gacaa-A-TTTTAG-T-GGTATAC---A-AGA-A----GAATCAGTTA-TGAGTAT--ATAA-TGAG-----ATCATTTGAT-TCCAA-CCT-TGGCATCACTTTTT--TT-TATAG-AAACCT
gi|13 : AT--ACTATTGAT-----GTTGTGAGAT-TCCAATTCT-CGGTAAAAC-TGTT--TT-GATAG-AAACCTCGGC--AAAGCCGA-GGGTCAGATAAA
gi|14 : TAT--ACTATTGAT-----GTTGTGAGAT-TCCAATTCT-CGGTAAAAC-TGTT--TT-GATAG-AAACCTCGGC--AAAGCCGA-GGGTCAGATAAActgga
gi|15 : TGTT----CAGAA-TATA-TG--TATAA-A-ACTTTG-T-GGTGTGC---A-AGA-A-AA-ctgg
gi|16 : agtacgacgtcatcctattcccacaagatggttaactgaT-CGGTATCAC-TGTA--TT-AACAG-AAACTTCGAC--AGGGTCTC-CGTTCCAATAAAaga
gi|17 : accatcgTCA-TGACTAT--ACAGCTGAG-----ATAGTGAGAT-TTATACCCT-CCGTACTTC-TGTT--TC-TATAG-GGACCtttgtcagacctta
gi|2 : ATAAATGTCT-GTGTT----GA----AAAA-CGAATACAA-A-TATTGT-T-GGTATGC---A-AGAGA-AA-GACTCGATTA-CGTGCAT--ACCATTGGC-----ACTATGGGAC-TTCAACCTT-CGGTATCAT-AGAT--TT-GGCAG-AAAACTCGAC--AGAGCATC-GTTTTCGA-AAAA---AAATT--AAACTTACATTTTTTTTACTAAATACCAATGATTGA--TTCCTTTATCTCA
gi|3 : aaaatgcacgtgctaatatgacgtcatcctatcttagaatattgttaAAAA-AAAA-CA---ATAA-A--CTT---T-GGTATGC---G-AGA-A-AAAGAATCAGTT-----GTAG--ACAGTAACG-----ATAATGGGAT-TCCAAC--T-AGGTATCGC-TGCT--TT-GGTTG-GAACCTCAAG--AGAGCTT
gi|4 : tctcatccttgagtcaagataaaattgacttgctaatgaaatacacattagtatgaaatcactttatgtttagaaaactgtatatcagtggatttgtgggggggaaaagtATCAATGTAT-TTGTC----AATAA-AAAAATG--TAAAA-AATCTTGA-CCGGTATAC---A-AGA-A-AA----TTAATCA-------------ATTGAG-----ATAAAGATAT-TCCGACACT-TGGTATCAC-TGTTTATT-AAT-G-GAGCCTTGCC--AGAACTTC-AGATGTAATGAAA---ATTGTTCAAACTtag
gi|5 : cacaatggaatgacatcattaccatattttcagaagatggtaaATCAACGTAT-GTGT-----AATAC-CGCA-TG--TACAG-A-TCTTAG-T-GGCATGG---A-ATATA-AA-TAACCAATCA-GGGGTAT--ACTATTGAG-----ATAATGAGAT-TACTACCCT-CGGTACCGC-TGTG--TT-GATAG-GCACCTCGAC--AGAGCCTC-GGTTTCAATAAAACCGGAAAT--GACCTTATCTTATTTT-----AATACCAATGG--GACGTTCTTATATTTCAcgggttggcatgtccctatctcaaac
gi|6 : atTCCATGTAT-TTGTTTTAGAAAAA-AAAA--------AA-G-TTTTTG-T-GGTATGCTAGA-AAA-A-AA-GAAT---TCATTAAGGAT--ACAATTGA--------AATGAGAT-TCCAACCCTGAGGTATCGG-TGTT------ATAA------TCGGC----AGTCTCTGATTGAGATAAAA---ATAGT--GAA
gi|7 : taaaatgaacatgttagtgtatgatgtcatgctgttcatgaaatacagcacatTCAGCATAT-TATTT----GACAA-AA-------TACAACA-TTATAGCT-GGTATGC---A-TGA-ACAA-GAATCAATAA-TGACTAC--ACAATCAAG-----ATAATGGGAG-TCAAACTCA-TGGTATCAC-TGTT--TT-GATAG-GAACC
gi|8 : taatgcactgataaaatgtgtgcactataatgatgcaatttaagctactgtaaggtggttatTATGTTGTT----ATTAA-GAAA---------A-A-TCTTAG-T-GGCATGT---A-AGAGA-AA-GAATTGACCA-TAAGTAT--AGGATTGAG-----ATGATGAGA---CAAACCCT-TAATATCA
gi|9 : gtataacgtcatactactcttagaagatgtaaatctatgttagacagcaaatgacagcA-GAA--AATTA---AATATCAACA-CTGAG-----ATAATGAGAT-TTCAACCAT-CAGTATCAC-TGTT--TT-GATAT-G--------------GCCTC-GGTTCCAATAAAG---AGAGT--ta
blockSeqs : G TTAG G . T CGAAT T C ATC AGC C TAG T G C A T TT TG A TTAAG G GA T TA . . A . T CCG A TC C A . . CG A
blockSeqs : . . A . A ATGT C . CC TA . . . T . . C T CA A . . T . . . . G . . . T .
blockSeqs : . . T . A TGT T . TT AG . . . G . . C T . T . . T . . . . G . . . A .
blockSeqs : . . T . A TGT A . AC TG . . . . . . C T . T . . T . . . . A . . . T .
blockSeqs : . . A . C CA C . TA GT . . . . . . T C . A . . C . . . . A . . . G .
blockSeqs : . . C . A T C . TC GA . . . . . . C G . C . . C . . . . A . .
blockSeqs : . T . A . . . TT AG . . . . . . C T . A . . C . . . . C . .
blockSeqs : . . . . . . TT TG . . . . . . T T . T . . C . . . . A . .
blockSeqs : . TC AG . . . . . . . . . A . . C . . . . G . .
blockSeqs : . C . . . . . . . . . . A . . A . . . . . .
blockSeqs : . . . G . . T . . . .
blockSeqs : . A . . C . . . .
blockSeqs : . . . . T . . . .
blockSeqs : . . T . . . .
blockSeqs : C
blockSeqCons : TC* **
originalCons : NNATCAACGTAT-TTGTT----AANAA-AAAA-CG--TACAA-A-TCTTNG-T-GGTATGC---A-AGA-A-AA-GAATCAATCA-TGAGTAT--ACAATTGAG-----ATAATGAGAT-TCCAACCCT-CGGTATCAC-TGTT--TT-GATAG-GAACCTCGGC--AGAGCCTC-GGTTCCGATAAAA---ANAGT--GAACTTACNTTNTTTTTACTAAATACCAATGGTTGACGTTCCTNTATCTCA
finalCons : NNATCAACGTAT-TTGTT----AANAA-AAAA-CG--TACAA-ATC-TTNG-T-GGTATGC---A-AGA-A-AA-GAATCAATCA-TGAGTAT--ACAATTGAG-----ATAATGAGAT-TCCAACCCT-CGGTATCAC-TGTT--TT-GATAG-GAACCTCGGC--AGAGCCTC-GGTTCCGATAAAA---ANAGT--GAACTTACNTTNTTTTTACTAAATACCAATGGTTGACGTTCCTNTATCTCA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): CTGTTCAAAAAAAATATAGACAAATATAAAGAACCATCATGG
Unaligned ( gi|19 ): ACAACAGTAAAACATCAGGTTGGAATATCCCTATCTCA
Alignments
lowQualScore : 1111 222222 1 111 22222 11 11
lowQualScore : 5 0000 5 4 2 555555 3 3 444 777 3 666 3 0 3 6 1 99 77 1 66666 2 22 2 33 2 2 1 55 4 0 0 111 1 99 1 1 77777 88 77 1
lowQualScore : . .... . . . ...... . . ... ... . ... . . . . . .. .. . ..... . .. . .. . . . .. . . . ... . .. . . ..... .. .. .
lowQualScore : 7 6666 3 4 0 222222 7 6 000 111 6 444 6 9 6 7 2 88 99 1 77777 7 66 7 77 7 7 8 00 0 7 5 777 0 22 0 0 00000 55 55 0
consensus : NNATCAACGTAT-TTGTT----AANAA-AAAA-CG--TACAA-A-TCTTNG-T-GGTATGC---A-AGA-A-AA-GAATCAATCA-TGAGTAT--ACAATTGAG-----ATAATGAGAT-TCCAACCCT-CGGTATCAC-TGTT--TT-GATAG-GAACCTCGGC--AGAGCCTC-GGTTCCGATAAAA---ANAGT--GAACTTACNTTNTTTTTACTAAATACCAATGGTTGACGTTCCTNTATCTCA
Reference ( family-94 ) : NNATCAACGTAT-TTGTT----AANAA-AAAA-CG--TACAA-A-TCTTNG-T-GGTATGC---A-AGA-A-AA-GAATCAATCA-TGAGTAT--ACAATTGAG-----ATAATGAGAT-TCCAACCCT-CGGTATCAC-TGTT--TT-GATAG-GAACCTCGGC--AGAGCCTC-GGTTCCGATAAAA---ANAGT--GAACTTACNTTNTTTTTACTAAATACCAATGGTTGACGTTCCTNTATCTCA
gi|1 : -TTGTT----AAAAACAAAA-TA--TATAG-A-T-TTGA-T-TGTATGC---A-AGA-A-AAAGAATCCACTA-GGAGTAT--ACAATCCAG-----TTAATGAGAT-TCCAACGTT-TGGTATCTC-TGTT--TTCAATAGCAAAACTCAGCAGAGAGCCTC-GAT--CTATAAGA---ACAAT--GAA
gi|10 : acgctaaggcagagataaaactcctgtggtataaaaatgcacatgctagtatgactgctatattcttacaagaagaaaattatgcaaATTGGG-----ATAATGAGAT-TCAAATCCT-TGGTATCAC--GGT--TT-AATGT-GAACCTTTAC--AGAGCCTC-AGTTCCAATGAAactaagggttggtatatctttaaccctaacccaatggccattaaagatatttatattccacactatagtatccctatttca
gi|11 : gAA-A-CCTTTA-A-GGCATGC---ATAAA-A-AA-GAATTAATCA-TGATTACTGACAATTAAGTTAAGAGAATGA-ATGTTCAACCTT-TGGTATCAC-TGCT--TT-GCAAG-GAACCcacttaaaacctttggttggaacatcaatccttatctcc
gi|12 : gacaa-A-TTTTAG-T-GGTATAC---A-AGA-A----GAATCAGTTA-TGAGTAT--ATAA-TGAG-----ATCATTTGAT-TCCAA-CCT-TGGCATCACTTTTT--TT-TATAG-AAACCT
gi|13 : AT--ACTATTGAT-----GTTGTGAGAT-TCCAATTCT-CGGTAAAAC-TGTT--TT-GATAG-AAACCTCGGC--AAAGCCGA-GGGTCAGATAAA
gi|14 : TAT--ACTATTGAT-----GTTGTGAGAT-TCCAATTCT-CGGTAAAAC-TGTT--TT-GATAG-AAACCTCGGC--AAAGCCGA-GGGTCAGATAAActgga
gi|15 : TGTT----CAGAA-TATA-TG--TATAA-A-ACTTTG-T-GGTGTGC---A-AGA-A-AA-ctgg
gi|16 : agtacgacgtcatcctattcccacaagatggttaactgaT-CGGTATCAC-TGTA--TT-AACAG-AAACTTCGAC--AGGGTCTC-CGTTCCAATAAAaga
gi|17 : accatcgTCA-TGACTAT--ACAGCTGAG-----ATAGTGAGAT-TTATACCCT-CCGTACTTC-TGTT--TC-TATAG-GGACCtttgtcagacctta
gi|2 : ATAAATGTCT-GTGTT----GA----AAAA-CGAATACAA-A-TATTGT-T-GGTATGC---A-AGAGA-AA-GACTCGATTA-CGTGCAT--ACCATTGGC-----ACTATGGGAC-TTCAACCTT-CGGTATCAT-AGAT--TT-GGCAG-AAAACTCGAC--AGAGCATC-GTTTTCGA-AAAA---AAATT--AAACTTACATTTTTTTTACTAAATACCAATGATTGA--TTCCTTTATCTCA
gi|3 : aaaatgcacgtgctaatatgacgtcatcctatcttagaatattgttaAAAA-AAAA-CA---ATAA-A--CTT---T-GGTATGC---G-AGA-A-AAAGAATCAGTT-----GTAG--ACAGTAACG-----ATAATGGGAT-TCCAAC--T-AGGTATCGC-TGCT--TT-GGTTG-GAACCTCAAG--AGAGCTT
gi|4 : tctcatccttgagtcaagataaaattgacttgctaatgaaatacacattagtatgaaatcactttatgtttagaaaactgtatatcagtggatttgtgggggggaaaagtATCAATGTAT-TTGTC----AATAA-AAAAATG--TAAAA-AATCTTGA-CCGGTATAC---A-AGA-A-AA----TTAATCA-------------ATTGAG-----ATAAAGATAT-TCCGACACT-TGGTATCAC-TGTTTATT-AAT-G-GAGCCTTGCC--AGAACTTC-AGATGTAATGAAA---ATTGTTCAAACTtag
gi|5 : cacaatggaatgacatcattaccatattttcagaagatggtaaATCAACGTAT-GTGT-----AATAC-CGCA-TG--TACAG-A-TCTTAG-T-GGCATGG---A-ATATA-AA-TAACCAATCA-GGGGTAT--ACTATTGAG-----ATAATGAGAT-TACTACCCT-CGGTACCGC-TGTG--TT-GATAG-GCACCTCGAC--AGAGCCTC-GGTTTCAATAAAACCGGAAAT--GACCTTATCTTATTTT-----AATACCAATGG--GACGTTCTTATATTTCAcgggttggcatgtccctatctcaaac
gi|6 : atTCCATGTAT-TTGTTTTAGAAAAA-AAAA--------AA-G-TTTTTG-T-GGTATGCTAGA-AAA-A-AA-GAAT---TCATTAAGGAT--ACAATTGA--------AATGAGAT-TCCAACCCTGAGGTATCGG-TGTT------ATAA------TCGGC----AGTCTCTGATTGAGATAAAA---ATAGT--GAA
gi|7 : taaaatgaacatgttagtgtatgatgtcatgctgttcatgaaatacagcacatTCAGCATAT-TATTT----GACAA-AA-------TACAACA-TTATAGCT-GGTATGC---A-TGA-ACAA-GAATCAATAA-TGACTAC--ACAATCAAG-----ATAATGGGAG-TCAAACTCA-TGGTATCAC-TGTT--TT-GATAG-GAACC
gi|8 : taatgcactgataaaatgtgtgcactataatgatgcaatttaagctactgtaaggtggttatTATGTTGTT----ATTAA-GAAA---------A-A-TCTTAG-T-GGCATGT---A-AGAGA-AA-GAATTGACCA-TAAGTAT--AGGATTGAG-----ATGATGAGA---CAAACCCT-TAATATCA
gi|9 : gtataacgtcatactactcttagaagatgtaaatctatgttagacagcaaatgacagcA-GAA--AATTA---AATATCAACA-CTGAG-----ATAATGAGAT-TTCAACCAT-CAGTATCAC-TGTT--TT-GATAT-G--------------GCCTC-GGTTCCAATAAAG---AGAGT--ta
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): CTGTTCAAAAAAAATATAGACAAATATAAAGAACCATCATGG
Unaligned ( gi|19 ): ACAACAGTAAAACATCAGGTTGGAATATCCCTATCTCA