lowQualScore : 11111
lowQualScore : 0 66666 777777 33 6
lowQualScore : . ..... ...... .. .
lowQualScore : 7 22222 777777 22 0
consensus : NTGTCTACACAATGACATAAG-NTCT------TTCCTAGCC--TGGAGTTCCTAGGCAGGAGGGGATTGAAC
Reference ( gi|6 ) : GTGTCTACACAATGGCATGAA-ATCT------TTCCTAGCC--TGGAGTTCCTAGGCAGGAGGGAATTGAAC
gi|5 : TGTCTACACAATGACATAAG-ATTT------GTCCTTGCC--TCGAGTTCCTAGGCAGGAGGGGATTGAAC
gi|1 : tTGTCTACACAATGACATTAG-CTCT------TAACTAGCC--TGGAGATCCCAGGCAGAAGGGGATTGAA
gi|4 : aaaacttTGTCTACACAATGGCATAAACATCT------T-CCT-GCC--TGGAGTTCCTAGCCAGGAGG
gi|2 : taaaacttTGTCTACACAATGACATGAG-CTCT------TAACTAGCC--TTGGGTTCCCAAGCAGAAGGGGATTaggt
gi|3 : aaaatttTGCCTACACAATGGCATAAG-CTGTCGGAGGTTCCTAGCCGCTGGAGTTCCTAGGCAta
gi|7 : taaaacttTGTCTACATAATGACAT--A-AGCT------CTC---------GGAGTTCCTATGCAGGAGGGGATTG
gi|13 : aatctt------TTCCTAGCC--TGGAGTTCCTAGGCAGGAGGGGAATGAAC
gi|8 : cgata------TTCCTAGCC--TAGAGTTCCTATGCAGGAGGGGATTGAAC
gi|9 : agatg------TTCCTAGCC--TGGTGTTTCTAGGCAGGAGGGGATTGAACc
gi|17 : agagg------TTCCTAGCC--TGGAATTCTTAGGCAGGAAGGGATTGAACc
gi|16 : aagg------TTCCTAGCC--TGGAATTCTTAGGCAGGAAGGGATTGAAC
gi|11 : agg------TTCCTAGCC--TGGAATTCTTAGGCAGGAAGGGATTGAACc
gi|10 : aaagg------TTTCTAGCC--AGGAGTTTCTAGGCAGGAGGGGATTGAAC
gi|14 : gagg------TTCCTAGCC--TGGAGTTCCTAGGCAGAAAGGGATTcc
gi|15 : agagg------TTCCTAGCC--AGGAGTTTCTAGGCAGGAGGGGaga
gi|12 : aagaggTCCAAGCC--TGGAATTCCCAGGCAGGAGGGGATTAAACgtta
gi|18 : gagaaCTAGCC--TGGAGTTCCTAGGCAGAAGGAGATTGAACc
Alignments
lowQualScore : 1 777777 33
lowQualScore : . ...... ..
lowQualScore : 0 222222 11
consensus : NTGTCTACACAATGGCATAAGCTCT------TTCCTAGC--CTGGAGTTCCTAGGCAGGAGGGGATTGAAC
Reference ( family-903 ) : NTGTCTACACAATGACATAAGNTCT------TTCCTAGC--CTGGAGTTCCTAGGCAGGAGGGGATTGAAC
gi|1 : TGTCTACACAATGACATTAGCTCT------TAACTAGC--CTGGAGATCCCAGGCAGAAGGGGATTGAA
gi|10 : aaaactt------TTTCTAGC--CAGGAGTTTCTAGGCAGGAGGGGATTGAAC
gi|11 : gagg------TTCCTAGC--CTGGAATTCTTAGGCAGGAAGGGATTGAACcc
gi|12 : aaaggTCCAAGC--CTGGAATTCCCAGGCAGGAGGGGATTAAAC
gi|13 : gagaa------TTCCTAGC--CTGGAGTTCCTAGGCAGGAGGGGAATGAACc
gi|14 : cgata------TTCCTAGC--CTGGAGTTCCTAGGCAGAAAGGGATT
gi|15 : agagg------TTCCTAGC--CAGGAGTTTCTAGGCAGGAGGGGAaga
gi|16 : aagagg------TTCCTAGC--CTGGAATTCTTAGGCAGGAAGGGATTGAACgtta
gi|17 : agg------TTCCTAGC--CTGGAATTCTTAGGCAGGAAGGGATTGAACc
gi|18 : aaggCTAGC--CTGGAGTTCCTAGGCAGAAGGAGATTGAAC
gi|2 : TGTCTACACAATGACATGAGCTCT------TAACTAGC--CTTGGGTTCCCAAGCAGAAGGGGATTcc
gi|3 : aaaatttTGCCTACACAATGGCATAAGCTGTCGGAGGTTCCTAGCCGCTGGAGTTCCTAGGCAta
gi|4 : taaaacttTGTCTACACAATGGCATAAACATC------TTCCT-GC--CTGGAGTTCCTAGCCAGGAGGAGGT
gi|5 : taaaacttTGTCTACACAATGACATAAGATTT------GTCCTTGC--CTCGAGTTCCTAGGCAGGAGGGGATTGAAC
gi|6 : tTGTCTACACAATGGCATGAAATCT------TTCCTAGC--CTGGAGTTCCTAGGCAGGAGGGAATTGAAC
gi|7 : gTGTCTACATAATGACATAAGCTCT------C-----------GGAGTTCCTATGCAGGAGGGGATTG
gi|8 : aatctt------TTCCTAGC--CTAGAGTTCCTATGCAGGAGGGGATTGAAC
gi|9 : agatg------TTCCTAGC--CTGGTGTTTCTAGGCAGGAGGGGATTGAACc
Alignments
lowQualScore : 777777 33
lowQualScore : ...... ..
lowQualScore : 222222 11
consensus : NTGTCTACACAATGGCATAAGCTCT------TTCCTAGC--CTGGAGTTCCTAGGCAGGAGGGGATTGAAC
Reference ( family-903 ) : NTGTCTACACAATGGCATAAGCTCT------TTCCTAGC--CTGGAGTTCCTAGGCAGGAGGGGATTGAAC
gi|1 : TGTCTACACAATGACATTAGCTCT------TAACTAGC--CTGGAGATCCCAGGCAGAAGGGGATTGAA
gi|10 : aaaactt------TTTCTAGC--CAGGAGTTTCTAGGCAGGAGGGGATTGAAC
gi|11 : gagg------TTCCTAGC--CTGGAATTCTTAGGCAGGAAGGGATTGAACcc
gi|12 : aaaggTCCAAGC--CTGGAATTCCCAGGCAGGAGGGGATTAAAC
gi|13 : gagaa------TTCCTAGC--CTGGAGTTCCTAGGCAGGAGGGGAATGAACc
gi|14 : cgata------TTCCTAGC--CTGGAGTTCCTAGGCAGAAAGGGATT
gi|15 : agagg------TTCCTAGC--CAGGAGTTTCTAGGCAGGAGGGGAaga
gi|16 : aagagg------TTCCTAGC--CTGGAATTCTTAGGCAGGAAGGGATTGAACgtta
gi|17 : agg------TTCCTAGC--CTGGAATTCTTAGGCAGGAAGGGATTGAACc
gi|18 : aaggCTAGC--CTGGAGTTCCTAGGCAGAAGGAGATTGAAC
gi|2 : TGTCTACACAATGACATGAGCTCT------TAACTAGC--CTTGGGTTCCCAAGCAGAAGGGGATTcc
gi|3 : aaaatttTGCCTACACAATGGCATAAGCTGTCGGAGGTTCCTAGCCGCTGGAGTTCCTAGGCAta
gi|4 : taaaacttTGTCTACACAATGGCATAAACATC------TTCCT-GC--CTGGAGTTCCTAGCCAGGAGGAGGT
gi|5 : taaaacttTGTCTACACAATGACATAAGATTT------GTCCTTGC--CTCGAGTTCCTAGGCAGGAGGGGATTGAAC
gi|6 : tTGTCTACACAATGGCATGAAATCT------TTCCTAGC--CTGGAGTTCCTAGGCAGGAGGGAATTGAAC
gi|7 : gTGTCTACATAATGACATAAGCTCT------C-----------GGAGTTCCTATGCAGGAGGGGATTG
gi|8 : aatctt------TTCCTAGC--CTAGAGTTCCTATGCAGGAGGGGATTGAAC
gi|9 : agatg------TTCCTAGC--CTGGTGTTTCTAGGCAGGAGGGGATTGAACc
blockSeqs : CGGAGG CG
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : .
blockSeqs : .
blockSeqCons :
originalCons : NTGTCTACACAATGGCATAAGCTCT------TTCCTAGC--CTGGAGTTCCTAGGCAGGAGGGGATTGAAC
finalCons : NTGTCTACACAATGGCATAAGCTCT------TTCCTAGC--CTGGAGTTCCTAGGCAGGAGGGGATTGAAC
Alignments
lowQualScore : 777777 33
lowQualScore : ...... ..
lowQualScore : 222222 11
consensus : NTGTCTACACAATGGCATAAGCTCT------TTCCTAGC--CTGGAGTTCCTAGGCAGGAGGGGATTGAAC
Reference ( family-903 ) : NTGTCTACACAATGGCATAAGCTCT------TTCCTAGC--CTGGAGTTCCTAGGCAGGAGGGGATTGAAC
gi|1 : TGTCTACACAATGACATTAGCTCT------TAACTAGC--CTGGAGATCCCAGGCAGAAGGGGATTGAA
gi|10 : aaaactt------TTTCTAGC--CAGGAGTTTCTAGGCAGGAGGGGATTGAAC
gi|11 : gagg------TTCCTAGC--CTGGAATTCTTAGGCAGGAAGGGATTGAACcc
gi|12 : aaaggTCCAAGC--CTGGAATTCCCAGGCAGGAGGGGATTAAAC
gi|13 : gagaa------TTCCTAGC--CTGGAGTTCCTAGGCAGGAGGGGAATGAACc
gi|14 : cgata------TTCCTAGC--CTGGAGTTCCTAGGCAGAAAGGGATT
gi|15 : agagg------TTCCTAGC--CAGGAGTTTCTAGGCAGGAGGGGAaga
gi|16 : aagagg------TTCCTAGC--CTGGAATTCTTAGGCAGGAAGGGATTGAACgtta
gi|17 : agg------TTCCTAGC--CTGGAATTCTTAGGCAGGAAGGGATTGAACc
gi|18 : aaggCTAGC--CTGGAGTTCCTAGGCAGAAGGAGATTGAAC
gi|2 : TGTCTACACAATGACATGAGCTCT------TAACTAGC--CTTGGGTTCCCAAGCAGAAGGGGATTcc
gi|3 : aaaatttTGCCTACACAATGGCATAAGCTGTCGGAGGTTCCTAGCCGCTGGAGTTCCTAGGCAta
gi|4 : taaaacttTGTCTACACAATGGCATAAACATC------TTCCT-GC--CTGGAGTTCCTAGCCAGGAGGAGGT
gi|5 : taaaacttTGTCTACACAATGACATAAGATTT------GTCCTTGC--CTCGAGTTCCTAGGCAGGAGGGGATTGAAC
gi|6 : tTGTCTACACAATGGCATGAAATCT------TTCCTAGC--CTGGAGTTCCTAGGCAGGAGGGAATTGAAC
gi|7 : gTGTCTACATAATGACATAAGCTCT------C-----------GGAGTTCCTATGCAGGAGGGGATTG
gi|8 : aatctt------TTCCTAGC--CTAGAGTTCCTATGCAGGAGGGGATTGAAC
gi|9 : agatg------TTCCTAGC--CTGGTGTTTCTAGGCAGGAGGGGATTGAACc