lowQualScore                  :                          11111                                                 
lowQualScore                  :                      0   66666   777777         33                     6       
lowQualScore                  :                      .   .....   ......         ..                     .       
lowQualScore                  :                      7   22222   777777         22                     0       
consensus                     :        NTGTCTACACAATGACATAAG-NTCT------TTCCTAGCC--TGGAGTTCCTAGGCAGGAGGGGATTGAAC
Reference ( gi|6 )            :        GTGTCTACACAATGGCATGAA-ATCT------TTCCTAGCC--TGGAGTTCCTAGGCAGGAGGGAATTGAAC
gi|5                          :         TGTCTACACAATGACATAAG-ATTT------GTCCTTGCC--TCGAGTTCCTAGGCAGGAGGGGATTGAAC
gi|1                          :        tTGTCTACACAATGACATTAG-CTCT------TAACTAGCC--TGGAGATCCCAGGCAGAAGGGGATTGAA
gi|4                          :  aaaacttTGTCTACACAATGGCATAAACATCT------T-CCT-GCC--TGGAGTTCCTAGCCAGGAGG
gi|2                          : taaaacttTGTCTACACAATGACATGAG-CTCT------TAACTAGCC--TTGGGTTCCCAAGCAGAAGGGGATTaggt
gi|3                          :  aaaatttTGCCTACACAATGGCATAAG-CTGTCGGAGGTTCCTAGCCGCTGGAGTTCCTAGGCAta
gi|7                          : taaaacttTGTCTACATAATGACAT--A-AGCT------CTC---------GGAGTTCCTATGCAGGAGGGGATTG
gi|13                         :                            aatctt------TTCCTAGCC--TGGAGTTCCTAGGCAGGAGGGGAATGAAC
gi|8                          :                             cgata------TTCCTAGCC--TAGAGTTCCTATGCAGGAGGGGATTGAAC
gi|9                          :                             agatg------TTCCTAGCC--TGGTGTTTCTAGGCAGGAGGGGATTGAACc
gi|17                         :                             agagg------TTCCTAGCC--TGGAATTCTTAGGCAGGAAGGGATTGAACc
gi|16                         :                              aagg------TTCCTAGCC--TGGAATTCTTAGGCAGGAAGGGATTGAAC
gi|11                         :                               agg------TTCCTAGCC--TGGAATTCTTAGGCAGGAAGGGATTGAACc
gi|10                         :                             aaagg------TTTCTAGCC--AGGAGTTTCTAGGCAGGAGGGGATTGAAC
gi|14                         :                              gagg------TTCCTAGCC--TGGAGTTCCTAGGCAGAAAGGGATTcc
gi|15                         :                             agagg------TTCCTAGCC--AGGAGTTTCTAGGCAGGAGGGGaga
gi|12                         :                                   aagaggTCCAAGCC--TGGAATTCCCAGGCAGGAGGGGATTAAACgtta
gi|18                         :                                      gagaaCTAGCC--TGGAGTTCCTAGGCAGAAGGAGATTGAACc





Alignments
lowQualScore                  :                             1   777777        33                              
lowQualScore                  :                             .   ......        ..                              
lowQualScore                  :                             0   222222        11                              
consensus                     :        NTGTCTACACAATGGCATAAGCTCT------TTCCTAGC--CTGGAGTTCCTAGGCAGGAGGGGATTGAAC
Reference ( family-903 )      :        NTGTCTACACAATGACATAAGNTCT------TTCCTAGC--CTGGAGTTCCTAGGCAGGAGGGGATTGAAC
gi|1                          :         TGTCTACACAATGACATTAGCTCT------TAACTAGC--CTGGAGATCCCAGGCAGAAGGGGATTGAA
gi|10                         :                          aaaactt------TTTCTAGC--CAGGAGTTTCTAGGCAGGAGGGGATTGAAC
gi|11                         :                             gagg------TTCCTAGC--CTGGAATTCTTAGGCAGGAAGGGATTGAACcc
gi|12                         :                                   aaaggTCCAAGC--CTGGAATTCCCAGGCAGGAGGGGATTAAAC
gi|13                         :                            gagaa------TTCCTAGC--CTGGAGTTCCTAGGCAGGAGGGGAATGAACc
gi|14                         :                            cgata------TTCCTAGC--CTGGAGTTCCTAGGCAGAAAGGGATT
gi|15                         :                            agagg------TTCCTAGC--CAGGAGTTTCTAGGCAGGAGGGGAaga
gi|16                         :                           aagagg------TTCCTAGC--CTGGAATTCTTAGGCAGGAAGGGATTGAACgtta
gi|17                         :                              agg------TTCCTAGC--CTGGAATTCTTAGGCAGGAAGGGATTGAACc
gi|18                         :                                      aaggCTAGC--CTGGAGTTCCTAGGCAGAAGGAGATTGAAC
gi|2                          :         TGTCTACACAATGACATGAGCTCT------TAACTAGC--CTTGGGTTCCCAAGCAGAAGGGGATTcc
gi|3                          :  aaaatttTGCCTACACAATGGCATAAGCTGTCGGAGGTTCCTAGCCGCTGGAGTTCCTAGGCAta
gi|4                          : taaaacttTGTCTACACAATGGCATAAACATC------TTCCT-GC--CTGGAGTTCCTAGCCAGGAGGAGGT
gi|5                          : taaaacttTGTCTACACAATGACATAAGATTT------GTCCTTGC--CTCGAGTTCCTAGGCAGGAGGGGATTGAAC
gi|6                          :        tTGTCTACACAATGGCATGAAATCT------TTCCTAGC--CTGGAGTTCCTAGGCAGGAGGGAATTGAAC
gi|7                          :        gTGTCTACATAATGACATAAGCTCT------C-----------GGAGTTCCTATGCAGGAGGGGATTG
gi|8                          :                           aatctt------TTCCTAGC--CTAGAGTTCCTATGCAGGAGGGGATTGAAC
gi|9                          :                            agatg------TTCCTAGC--CTGGTGTTTCTAGGCAGGAGGGGATTGAACc





Alignments
lowQualScore                  :                                 777777        33                              
lowQualScore                  :                                 ......        ..                              
lowQualScore                  :                                 222222        11                              
consensus                     :        NTGTCTACACAATGGCATAAGCTCT------TTCCTAGC--CTGGAGTTCCTAGGCAGGAGGGGATTGAAC
Reference ( family-903 )      :        NTGTCTACACAATGGCATAAGCTCT------TTCCTAGC--CTGGAGTTCCTAGGCAGGAGGGGATTGAAC
gi|1                          :         TGTCTACACAATGACATTAGCTCT------TAACTAGC--CTGGAGATCCCAGGCAGAAGGGGATTGAA
gi|10                         :                          aaaactt------TTTCTAGC--CAGGAGTTTCTAGGCAGGAGGGGATTGAAC
gi|11                         :                             gagg------TTCCTAGC--CTGGAATTCTTAGGCAGGAAGGGATTGAACcc
gi|12                         :                                   aaaggTCCAAGC--CTGGAATTCCCAGGCAGGAGGGGATTAAAC
gi|13                         :                            gagaa------TTCCTAGC--CTGGAGTTCCTAGGCAGGAGGGGAATGAACc
gi|14                         :                            cgata------TTCCTAGC--CTGGAGTTCCTAGGCAGAAAGGGATT
gi|15                         :                            agagg------TTCCTAGC--CAGGAGTTTCTAGGCAGGAGGGGAaga
gi|16                         :                           aagagg------TTCCTAGC--CTGGAATTCTTAGGCAGGAAGGGATTGAACgtta
gi|17                         :                              agg------TTCCTAGC--CTGGAATTCTTAGGCAGGAAGGGATTGAACc
gi|18                         :                                      aaggCTAGC--CTGGAGTTCCTAGGCAGAAGGAGATTGAAC
gi|2                          :         TGTCTACACAATGACATGAGCTCT------TAACTAGC--CTTGGGTTCCCAAGCAGAAGGGGATTcc
gi|3                          :  aaaatttTGCCTACACAATGGCATAAGCTGTCGGAGGTTCCTAGCCGCTGGAGTTCCTAGGCAta
gi|4                          : taaaacttTGTCTACACAATGGCATAAACATC------TTCCT-GC--CTGGAGTTCCTAGCCAGGAGGAGGT
gi|5                          : taaaacttTGTCTACACAATGACATAAGATTT------GTCCTTGC--CTCGAGTTCCTAGGCAGGAGGGGATTGAAC
gi|6                          :        tTGTCTACACAATGGCATGAAATCT------TTCCTAGC--CTGGAGTTCCTAGGCAGGAGGGAATTGAAC
gi|7                          :        gTGTCTACATAATGACATAAGCTCT------C-----------GGAGTTCCTATGCAGGAGGGGATTG
gi|8                          :                           aatctt------TTCCTAGC--CTAGAGTTCCTATGCAGGAGGGGATTGAAC
gi|9                          :                            agatg------TTCCTAGC--CTGGTGTTTCTAGGCAGGAGGGGATTGAACc


blockSeqs                     :                                 CGGAGG        CG
blockSeqs                     :                                 .             . 
blockSeqs                     :                                 .             . 
blockSeqs                     :                                 .             . 
blockSeqs                     :                                 .             . 
blockSeqs                     :                                 .             . 
blockSeqs                     :                                 .             . 
blockSeqs                     :                                 .             . 
blockSeqs                     :                                 .             . 
blockSeqs                     :                                 .             . 
blockSeqs                     :                                 .             . 
blockSeqs                     :                                 .             . 
blockSeqs                     :                                 .             . 
blockSeqs                     :                                 .             . 
blockSeqs                     :                                 .             . 
blockSeqs                     :                                               . 
blockSeqs                     :                                               . 


blockSeqCons                  :        
originalCons                  :        NTGTCTACACAATGGCATAAGCTCT------TTCCTAGC--CTGGAGTTCCTAGGCAGGAGGGGATTGAAC
finalCons                     :        NTGTCTACACAATGGCATAAGCTCT------TTCCTAGC--CTGGAGTTCCTAGGCAGGAGGGGATTGAAC





Alignments
lowQualScore                  :                                 777777        33                              
lowQualScore                  :                                 ......        ..                              
lowQualScore                  :                                 222222        11                              
consensus                     :        NTGTCTACACAATGGCATAAGCTCT------TTCCTAGC--CTGGAGTTCCTAGGCAGGAGGGGATTGAAC
Reference ( family-903 )      :        NTGTCTACACAATGGCATAAGCTCT------TTCCTAGC--CTGGAGTTCCTAGGCAGGAGGGGATTGAAC
gi|1                          :         TGTCTACACAATGACATTAGCTCT------TAACTAGC--CTGGAGATCCCAGGCAGAAGGGGATTGAA
gi|10                         :                          aaaactt------TTTCTAGC--CAGGAGTTTCTAGGCAGGAGGGGATTGAAC
gi|11                         :                             gagg------TTCCTAGC--CTGGAATTCTTAGGCAGGAAGGGATTGAACcc
gi|12                         :                                   aaaggTCCAAGC--CTGGAATTCCCAGGCAGGAGGGGATTAAAC
gi|13                         :                            gagaa------TTCCTAGC--CTGGAGTTCCTAGGCAGGAGGGGAATGAACc
gi|14                         :                            cgata------TTCCTAGC--CTGGAGTTCCTAGGCAGAAAGGGATT
gi|15                         :                            agagg------TTCCTAGC--CAGGAGTTTCTAGGCAGGAGGGGAaga
gi|16                         :                           aagagg------TTCCTAGC--CTGGAATTCTTAGGCAGGAAGGGATTGAACgtta
gi|17                         :                              agg------TTCCTAGC--CTGGAATTCTTAGGCAGGAAGGGATTGAACc
gi|18                         :                                      aaggCTAGC--CTGGAGTTCCTAGGCAGAAGGAGATTGAAC
gi|2                          :         TGTCTACACAATGACATGAGCTCT------TAACTAGC--CTTGGGTTCCCAAGCAGAAGGGGATTcc
gi|3                          :  aaaatttTGCCTACACAATGGCATAAGCTGTCGGAGGTTCCTAGCCGCTGGAGTTCCTAGGCAta
gi|4                          : taaaacttTGTCTACACAATGGCATAAACATC------TTCCT-GC--CTGGAGTTCCTAGCCAGGAGGAGGT
gi|5                          : taaaacttTGTCTACACAATGACATAAGATTT------GTCCTTGC--CTCGAGTTCCTAGGCAGGAGGGGATTGAAC
gi|6                          :        tTGTCTACACAATGGCATGAAATCT------TTCCTAGC--CTGGAGTTCCTAGGCAGGAGGGAATTGAAC
gi|7                          :        gTGTCTACATAATGACATAAGCTCT------C-----------GGAGTTCCTATGCAGGAGGGGATTG
gi|8                          :                           aatctt------TTCCTAGC--CTAGAGTTCCTATGCAGGAGGGGATTGAAC
gi|9                          :                            agatg------TTCCTAGC--CTGGTGTTTCTAGGCAGGAGGGGATTGAACc