lowQualScore : 1111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111 1 5555555555555555555555555555555555555555555555555555555555 33333333333333333 1 3333333333333333 11 222 1111111 1111111111111 111111 11 1 11 111
lowQualScore : 2 1 777777 555 0 7777777777777777777777777777777777777777777777777777777777 11111111111111111 3 0 333 2 4444 33 99 3 5555 0 4 3 555 7777777777777777 2 11 4 000 6666 4444 1 2 1 0000000 666 4444444444444 3 222 000000 33 11 33 5 3 4 1 2 22 8 1 1 4 3 4 8 1 11 222
lowQualScore : . . ...... ... . .......................................................... ................. . . ... . .... .. .. . .... . . . ... ................ . .. . ... .... .... . . . ....... ... ............. . ... ...... .. .. .. . . . . . .. . . . . . . . . .. ...
lowQualScore : 5 1 777777 222 5 7777777777777777777777777777777777777777777777777777777777 11111111111111111 5 9 999 3 7777 11 22 4 4444 1 4 6 111 6666666666666666 0 00 2 000 2222 2222 2 5 7 0000000 444 3333333333333 5 555 444444 77 11 77 1 0 5 5 7 00 9 5 5 6 5 6 5 8 99 000
consensus : AACAACCATAAGT-GCACCTCATTTAA---NN-TAAT-CAATTACATGCACTAATTATAA--C-T--------AA--------------------G----T-------A----ATATAT-----------------GGCTGCAATCGGTAAATACAAAAAGAAATA---ATA----A--TA--TTCTT-GTCG--ATT-AATCTAC-ACT--TT-----A----A-----TC-GTCAGTC-TACANATTTAANCTTA----TCA----TGAGTATAAACAATGTTAGTAAATAGTAAGCACCGAATCC-AAAAA-------TA-T-AAAA-------------TA-GTTGT-AGTA-----TTAAAC--AACTT-AGTTAANGATAAAC-TTCAAATTT-GAATGTAG--ACACGTCTT-A-TT-ATGTG-AAATCATCTTCATTCATCACTCATTAATCATCACAGAAATGCGTAATCATCTTTTAT-GTTTTT
Reference ( gi|5 ) : AACAACCATAAGT-GCACCTTATTTAA---AT-TAAT-CAAATACATGCACTAAT------------------AA--------------------G----T-------A----ATATAT-----------------GGCTGCAATCGGTAAATATAAAAAGAAATA---ATA----A--TA--TTCTTAGTTG--ATT-AATCTAC-ACT--TT-----G----A-----TC-GTCAATC-AACAAATTTAAAAATA----TCA----TGAGTATAAACAATGTTAGTAAACAGTAAGCACCGAATCC-AAAAA-------TA-T-AAAA-------------TA-GTTGT-AGTA-----TTAAAC--AACTC-AGTTAATAATAAAC-TTCAAAGTT-GAATATAG--ACACGACTT-A-TT-ATGTG-AA-TCATCTCCATTCATCATACATTAATCATCACAGAAATGTGTAATCATCTTTTAA-ATTTTT
gi|6 : AACAACCATAAGT-GCACCTTATTTAA---AT-TAAT-CAAATACATGCACTAAT------------------AA--------------------G----T-------A----ATATAT-----------------GGCTGCAATCGGTAAATATAAAAAGAAATA---ATA----A--TA--TTCTTAGTTG--ATT-AATCTAC-ACT--TT-----G----A-----TC-GTCAATC-AACAAATTTAAAAATA----TCA----TGAGTATAAACAATGTTAGTAAACAGTAAGCACCGAATCC-AAAAA-------TA-T-AAAA-------------TA-GTTGT-AGTA-----TTAAAC--AACTC-AGTTAATAATAAAC-TTCAAAGTT-GAATATAG--ACACGACTT-A-TT-AGGTG-AA-TCATCTCCATTCATCATACATTAATCATCACAGAAATGTGTAATCATCTTTTAA-ATTTTT
gi|8 : AACAACCATAAGT-GCACCTTATTTAA---AT-TAAT-CAAATACATGCACTAAT------------------AA--------------------G----T-------A----ATATAT-----------------GGCTGCAATCGGTAAATACAAAAAGAAATA---ATA----A--TA--TTCTTAGTTG--ATT-AATCTAC-ACT--TT-----G----G-----TC-GTCAACC-AACAAATTTAAAAATA----TCA----TGAGTATAAATAATGTTAGTAATCAGTAAGCACCGAATCC-AAAAA-------TT-T-AAAA-------------TA-GTTGT-AGTA-----TTAAAC--AACTT-AATTAATGATAAAC-TTCAAAGTT-GAATATAG--ACACGACTT-A-TT-ATGTG-AA-TCATCTCCATTCATCATACATTAATCATCACAGAAATGTGTAATCATCTTTT-A-ATTTTT
gi|9 : AACAACCATAAGT-GCACCTTATTTAA---AT-TAAT-CAATTACATGCACTAAT------------------AA--------------------G----T-------A----GTATAT-----------------GGCTGCAATCGGTAAATACAAAAAGAAATA---ATA----A--TA--TTCTTAGTTG--ATT-AATCTAC-ACT--TT-----G----G-----TC-GTCAATC-TACAAATTTAAAAATA----TCA----TGAGTATAAACAATGTTAGTAATCAGTAAGCACCGAAT-C-AAAAA-------TA-T-TAAA-------------TA-GTTGT-AGTA-----TTAAAC--AACTC-AGTTAATAATAAAC-TTCAAAGTT-GAATATAG--ACACGACTT-A-TT-TTGTG-AA-TCATCTCCATTCATCACACATTAATCATCACAGAAATGTGTAATCATCTTTT-A-ATTTT
gi|7 : AACAACCATATGT-GCACCTTATTTAA---AT-TAAT-CAATTACATGCACTAAT------------------AA--------------------G----T-------A----ATATAT-----------------GGCTGCAATCGGTAAATACAAAAAGAAATA---ATA----A--TA--TTCTTAGTCG--ATT-AATCTAC-ACT--TT-----A----G-----TC-GTCAATC-TACAAACTTAAAATTA----TCA----TGAGTATAAACAATGTTAGTAATTAGTAAGCACCGAATCC-AAAAA-------TA-T-AAAA-------------TA-GTTGT-AGTA-----TTAAAC--AACTC-AGTTAATAACAAAC-TTCAAAGTT-GAATATAG--ACACGACTT-A-TT-AAGTG-AA-TCATCTACATTCATCACACATTAATCATCACAGAAATGTGTAATCATCTTTT---ATTTTT
gi|17 : AACAACCATAAGT-GCACCTTATTTAA---AT-TAAT-CAAATACATGCACTAAT------------------AA--------------------G----T-------A----ATATAT-----------------GGCTGCAATCGGTAAATACAAAAAGAAATA---ATA----A--TA--TTCTTAGTTG--AAA-AATATAA-AATAGTT-----GT---A-----GT-ATTAAAC-AACTCAGTTAATAATAAACTTCAAAGTTGAATATAGACAt
gi|20 : AACAAGCATAGGT-GCACCTCATTTAA---CA-TAAG-TAATTACATGCACTGATTATAAACCATT-------AATAGGTTTAT-----------G----T-------A----ATATAT-----------------GGCTGCAATCGGTGAATACAAACTGAAATA---AAA----A--TAATTTCTTTGT----A-T-AAACTACAAAT--TT-----G----A-----cgacttattatgtgaatcatctccattcatcatacattaatcatcacagaaatgtgtaatcatcttttaattttt
gi|19 : AACAAGCA-AAGTTGCACCTCATTTAA---CA-TAAG-TAATTACATGCACTGATTATAAACCATT-------AATAGGTTTAT-----------G----T-------A----ATATAT-----------------GGCTGCAATCGGTGAATACAAACTGAAATA---AAA----A--TAATTTCTTTGT----A-T-AAACTACAAAT--TT-----G----A-----atgcaaactcttcttatttattgaaatcatcttcattcatcactcattattcatcacagaaatgcgtaatcatcttatatgttttt
gi|29 : AACAACCATAAGT-GCACCTTATTTAA---AT-TAAT-CAAAatgcaaactcttcttatttattgaaatcatcttcattcatcactcattattcatcacataaatgcgtaatcatcttatatgttttt
gi|1 : T-GCACTTCATTTAA---TA-TAAG-TAATTACATGCACTAATCAT---------------AA--------------------ACCATT-------A----ATATACAGGTTTATATTATATAAGGCTGCAATCAGTAAATACAAAAAGAAAAACAAATA----A--TA--TTTTTG--TG--ATTTAATCTAC-ACA--TT-----A----AAACAATC-ATCAGTC-TACACATTTAATCTTA----TTA----TGAGTATAATCAACCTTTGTAAATAGTAAGCACCGAATCC-AAAAA-------AA-T-AAAAAA-----------TA-AAAAA-AACAA----TTAGTCG-AACCT-AATTAAAGATAAAC-TTCAAGTTT-GAATGTCG--ACACGTCTT-A-TT-ATGTG-AAATCATCCTCATTCATCACTCATTAAACATCACAGAAATGCGAAATCATCTTTTAT-GTTTTT
gi|4 : T-GCACTTCATTTAA---TA-TAAG-TAATTACATGCACTAATTATAAACCATTAGTATACAA--------------------G----TTT-----ATGTTATATAA-----------------GGCTGCATTCGGTGAATACAAAAAGAAGAA---AAA----A--AA--T-----GTCA--TTT-AATCTAC-ACA--TT-----A----AAACAATC-GTCAGTC-TACACACTTAAGTTTA----TTA----TGAGTATAATCAACACTTGTAAATAGTAAGCACCGAAT---AAAAA-------AA-A-AAAA-------------GA-------AGAA-----TTAGTCG-AACCT-AATTAAAGATAAAC-TTCAAATTT-GAATGTCG--ACACGTCTT-A-TT-ATGTG-AACTCATCCTCATTCATCACGCATTAATCACCACAGAAATGTGTAATCATCTTTTAT-GTTTTT
gi|3 : T-GCACTTCATATAA---TA-TAAG-TAATTACATGCACTAATTAT---------------AA--------------------ACCATT-------A----ATATACAGGTTTACGTTATATAAGGCTGCAATTGGTAAATACAAACTGAAAAA---A-A----A--GA--TTTTT--TTGTCATTTAATCTAC-ACA--TT-----A----AAACAATC-ATCAGTC-CACACATTTCATCTTA----TTA----TGAGTATAATCA-CATTTGTAAATAGTAAGCACAGAATAA-AAAAA-------AA-A-AAAA-------------AA-ATT---AGT-------CAAAC----CT--AATTAAAGATAAAC-TTCAAGTTT-GAATGTTG--ACACGTCTT-A-TT-ATGTG-AAATCATCCTCATTCATCACTCATTAATCATCACAGAAATGTGTAATCATCTTTTAT-ATTTTT
gi|11 : T-GCACCTAATTTAA----C-TAATGTAATTACATGCACTAATTATAAACCATTAAT----AG--------------------G----TTTTTTCTAT---ATATAT-----------------GGCTGCAATTGGTAATTATAAAAA-AAATA---ATAGAAAA--TAAATTTTTTGATA--ATT-AATCTAC-ATA--TT-----A----AAATAGTC-GTCGGTC-TACAAATTTAATCTTA----TCC----AGACTATAAACAATGTTATTAAATGGTAAGCACTGAATC-----AA-------TA-TAAAAA-------------TT-GTTGT-TATAT----TTATGC--AGATT-AGTTAAAAATAAACATTCAAATTT-AAATATAA--ACAC--CTTAA-TT-GT-TGAAA-TCATCTTCATT-------CATTAGTCATCACAGA
gi|16 : T-GCACCTCATTTAAT--AT-AAGT-TAT-TGCATGCATTAATTATAACTCTTT-------AATATATAGGTTTCT-------G----T-------A----ATATAT-----------------GGCTGCAATCGGTAAATAC-AAAAGAAAT-----T-----A--TA--TTTTT-GTTA--ATT-AATCTAC-ATA--TTAAAACA----A-----TC-TCCAGTT-TACACACTTAATCTTA----TTG----TGATTATAAACAATGTTATTAAATAGTAAGCACCGAATCA-AAAAA-------AA-T-GAAA-------------TA-AAAAA-AATAAT---TTATGC--AACTT-AGTTAATAATAAAC-TTCAAATTT-GAATGTAA--ACTCGTCTT-A-T
gi|12 : T-GCACTTCATTTAA---TA-TAAG-TAATTGCATGCACTAATTATAAACCATC-------AATATACAGGTTTAT-------G----T-------T----ATATAA-----------------GGCTGCAATCGGTAAATACAAAAAGAAAAA---AAA----AAATA--TTTTT-GTCA--TTT-AATCTA--------------------------------------CACATT--AAAACAC---TCG----TCAGTTTACACA---TT---------TAAGCAGCAAATCC-AAAAA-------AA-A-AAAA-------------AA-ATT---AGT-----------CG-AACCT-AATTAAAGATAAAC-TTCAAGTTT-GAATGTCG--ACACGTCGT-A-TT-ATGTG-AAATCATCCTCATTCATCACTCATTAATCATCACAGAAATGTGTAATCATCTTTTAT-GTTTTT
gi|15 : T-GCACTTCATTTAATATATGTAAT-----TACATGCACTAATTATA--------------AACCATTGATATACAGGTTTATG----T-------T----ATATAA-----------------GGCTGCAATCGGTAAATACAAAAAGAAAAA---AAA----A--TG--TCATT---------T-AATTTAC-ACA--TT-----A----AAACAATC-GTCAGTC-TACACATTTAATCTTA----GTA----TGAATATAATCAACGTTTGTAAATAGTATGCACCGAATCC-AAAAAAAAAC--TA-T-ATAA-------------T---TTTT---TT-----TTAAGTCGAACCT-TATTAAAGATAAAC-TTCAAGTTT-GAATGTCG--ACACGTCTT-A-TA-ATGTGAAA-TCATCCTCATTTAT
gi|2 : -GCACCTCATTTAA---TA-TAAG-AAACTACATGCACTAATTATAAACCTTT-------AATATATAGGTTTAT-------G----T-------A----ATATAT-----------------GGCTGCAACTGGTGAATACAATAAGAAATA---ATA----A--TA--GTTTTGGTCA--ATT-A-------------------------------------ATC-TACACATTTAATCTTA----TCA----TGAGTATTAACAATGTTAGTAAATAGTAAGCACCGAATCC-AAAAAAAAAAGTTA-T-AAAAAAACAACAAAAAATA-GTTGT-ATGA-----TAATGC--AACCT-AGTTGA-AATAA-C-TTCAAGTTT-GAATGTCG--ACACGCCTT-A-TC-ATTTG-AAACCATCTTCATTGATCACTCATTAATCATCACAGAAATGCGTAATCATCTTTTAT-GTTTTT
gi|14 : -TAAT-CAAATACATGCACTAAT------------------AA--------------------G----T-------A----ATATAT-----------------GGCTGCAATCGGTAAATATAAAAAGAAATA---ATA----A--TA--TTCTTAGTTG--ATT-AATCTAC-ACT--TT-----G----G-----TC-GTCAATC-AACAAATTTAAAAATA----TCA----TGAGTATAAACAATGTTAGTAAACAGTAAGCACCGAATCC-AAAAA-------TA-T-AAAA-------------TA-GTTGT-AGTA-----TTAAAC--AACTC-AGTTAATAATAAAC-TTCAAAGTT-GAAAATAG--ACACGACTT-A-TT-ATGTG-AA-TCATCTCCATTCATCATACATTAATCATCACAGAAATGTGTAATCATCTTTTAA-ATTTTT
gi|13 : T------------------AT--------------------G----T-------A----ATATAT-----------------GGCTGCAATCGGTAAATACAAAAAGAAATG---ATA----A--TA--TTTTTTGTTA--ACT-AATCTAC-ATA--TTAAAACA----A-----TT-GTCAGTT-TACACATTTAATCTTA----TCA----TGAGTATAAACAATGTTAGTAAATATTAAGCAACTAATCCAAAAAA-------TA-G-AAAA-------------TA-GTTGT-ATGA-----TTATGC--AACTT-TGTTAATAATAAAC-TTCAAATCT-GAATGTCA--ACATGTCTT-A-T-----------TTATCTTCATTCATCACTCATTAATCATCTCAGAAATGCGTAATCATCTTTTAT-GTTTTT
gi|10 : ataaacctttaatatacaggttT------------------AT--------------------G----T-------T----ATATAC-----------------GGCTGCAATTGGTTAATACAAAAAGAAA------------A--TA--TTTTT-GTCA--TTT-AATCTTC-ACA--TA-----AGGAAA-----TC-TTCAGTCTAACA--TTTAATCTTA----TTA----TGAGTATAATCAATGTTTGTAAATAGTAAGCACCGAACCC-AAAAA-------TA---AAAA-------------TAAGTT---AGT-----------CG-AACTT-AATTAAAGATAAAC-TTCAAGTTT-GAATGTCG--ACACGTCTT-A-TT-ATGTG-AAATCATCCTCATTCATCACTCATTAATCATCACAGAAATGTGTAATCATCTTTTAT-GTTTTT
gi|18 : tatttaatacaagtagttacatgcactaattataaacaattaatataggttCTAC-ATT--TT-----ATAC-A-----TTTATCAATC-TATAACTTTAG---------TC-----T---TATAA-TAATGATGATAAATAGTAAGCACGGAATCC-ATAGA------------AAAA-------------TA-GTTGTAAATA------TAAAC--CTCTT-GGTTTGCAA-AAATGTTTTAAGTT-ACATA-AGTTACACG--TT-ATTT-AT-TG-AAGTAATTTCCATTCATCACCCATCAGTCATCAC
gi|23 : AC-ACT--TT-----A----A-----TC-GTCAATC-TACAAATTTAAACTTA----TCA----TGAATATAAACAATGTTAGTAATTAGTAAGCACCGAATCC-AAAAA-------TA-T-AAAA-------------TA-GTTGT-AGTA-----TTAAAC--AACTC-AGTTAATAACACAC-TTCAAAGTT-GAATATAG--ACACGACTT-A-TT-ATGTG-AA-TCATCTCCATTCATCACTCATTAATCATCACAGAAATGTGTAATCATCTTTTAT-GTTTTTccaccattcatcacccatcagtcatcacagacattttgaatcatcttttatgttttt
gi|22 : AC-ACT--TT-----A----A-----TC-GTCAATC-TAAAAATTTAATCGTA----TCA----TGAGTATAAACAATGTTAGTAATTAGTAAGCACCGAATCC-AAAAA-------TA-G-AAAA-------------TA-GTTGT-AGTA-----TTATAC--AACTT-AGTTAATAACAAAC-TTCAAGGTT-GTATATAG--ACACGACTT-A-TT-ATGTG-AA-TCATCTTCATTCATCACTCATTAATCACCACAGAAATGTGTAATCATCTTTTAT-GTTTTT
gi|24 : -ACT--TT-----G----A-----TC-GTCAATC-AACAAATTTAAAAATA----TCA----TGAGTATAAACAATGTTAGTAAACAGTAAGCACCGAATCC-AAAAA-------TA-T-AAAA-------------TA-GTTGT-AGTA-----TTAAAC--AACTC-AGTTAATAATAAAC-TTCAAAGTT-GAATATAG--ACACGACTT-A-TT-ATGTG-AA-TCATCTCCATTCATCATACATTAATCATCACAGAAATGTGTAATCATCTTTTAA-ATTTTT
gi|26 : TAAATAATAAGCACCGAACCC-AAAAA-------TA---AAAA-------------TAAGTT---AGTC----------C--AAATT-AATTAAAGATAAAC-TTCAAGTTT-CAATATCG--ACAAATCTT-A-TT-ATGTG-AAATTATCCTCATTCATCACTCATTAATTATCACAGAAATGCGTAATCATCTTTTAT-GTTTTT
gi|21 : TAAGCCCCGAATCC-AAAAA-------TA-A-AAAA-------------------GT-AAAAAAAATTTAGTCG-AACTT-AATTAAAGATAAAC-TTCAAATTT-GAATGTCG--ACACTTCTT-A-TT-ATGTGAAA-TCATCTTCATTCAACACTCATTAATCATCACAGAAATCTG-AATCAT-TTCTAATGTTTTT
gi|17 : agccaaccagaggtgaattacctcgtatgacctttaatggaatgttaagcagctttaattcaact-AAAAA-------TA-T-AAAA-------------TA-GTTGT-AGTA-----TTAAAC--AACTC-AGTTAATAATAAAC-TTCAAAGTT-GAATATAG--ACACGACTT-A-TT-ATGTG-AA-TCATCTCCATTCATCATACATTAATCATCACAGAAATGTGTAATCATCTTTT-A-ATTTTT
gi|25 : aacaaccataagtgcaccttatttaaattaatcaaatacatgcactaataagtaatatatggctgcaatcggtaaatacaaaaagaaataataatattcttagttg-AAAAA-------TAAT-AAAACA-----------TA-GTTGT-A-TG-----ATAATG--AAATCTAGTAAAAGATCAAC-TTCATGTTT-GAATGTCG--ACACGTCTT-A-TT-ATTTG-AAATCATCCTCATTCATCACTCATTAATCATCACAGAAATGCGTAATTATCTTTTAT-GTTTTT
gi|20 : gaatgacaaattgtttttatATAAAC-TACAAATTT-GAATGCAA--ACTCTTCTT-A-TTTAT-TG-AAATCATCTTCATTCATCACTCATTATTCATCACAGAAATGCGTAATCATCTTATAT-GTTTTTa
gi|19 : aacaagcataggtgcacctcatttaacataagtaattacatgcactgattataaaccattaataggtttatgtaatatatggctgcaatcggtgaatacaaactgaaataaaaataatttctttgtATAAAC-TACAAATTT-GAATGCAA--ACTCTTCTT-A-TTTAT-TG-AAATCATCTTCATTCATCACTCATTATTCATCACATAAATGCGTAATCATCTTATAT-GTTTTT
gi|27 : aacaagcaaagttgcacctcatttaacataagtaattacatgcactgattataaaccattaataggtttatgtaatatatggctgcaatcggtgaatacaaactgaaataaaaataatttctttgtATAAAC-TACAAAATTTGAATGCAA--ACTC---TT-A-TTTAT-TG-AAATCATC---ATTCATCACTCATAATTCATCACAGAAATGCGTAATCATCTTTTAT-GTTTTT
gi|28 : AAAC-TTTTAAGTT---ATAT-----------TT-A-TT-G---A-AA-TCATTTTCATTCGTCATTCATCAATAATTACAGAAATAAGTAATCATTCTTTAT-GCTTTT
gi|30 : CATCACAAAAATGTGTAATCATCTTTTAT-GTTTTT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 555555555555555555555555555555555555555555555555555555555555555555 1 3333333333 1111111111111 11 1
lowQualScore : 2 44 55 777777777777777777777777777777777777777777777777777777777777777777 0 333 0 6666 22 999 4 6 2 55 2 3 8888888888 2 0 1 333 2 0 1 9999999 555 3333333333333 3 1 22 1 99999 11 00 222 11 1 1 0 222 2 1 5 3 0 0 1 0
lowQualScore : . .. .. .................................................................. . ... . .... .. ... . . . .. . . .......... . . . ... . . . ....... ... ............. . . .. . ..... .. .. ... .. . . . ... . . . . . . . .
lowQualScore : 4 22 77 333333333333333333333333333333333333333333333333333333333333333333 4 777 5 6666 99 555 2 8 1 77 2 9 0000000000 0 5 7 000 0 7 7 6666666 777 8888888888888 3 8 33 7 88888 77 66 999 88 5 5 9 666 1 5 9 9 0 5 2 7
consensus : AACAACCATAAGT-GCACCTCATTTAANATAAG-CAATTACATGCACTAATTATA----AA----------------TT----A--A-------------GTA--------------ATATATGGCTGCAATCGGTAAATACAAAAAGAAATA---ATA----A--TA---TTC-TT-G-TCGATT-AATCTACACTTTA----A-----TC-GTCAGTCTACAAATTTAANCTTA-TCATGAGTATAAACAATGTTAGTAAATAGTAAGCACCGAATCC-AAAAA-------TA-T-AAAA-------------TA-GTTGTA--G-TA-----TTAAAC--AACTTAGTT---AANGATAAAC-TTCAAA-TTTGAATGTAG---ACACGTCTT-ATT-ATGTGAAATCATCTTCATTCATCACTCATTAATCATCACAGAAATGCGTAATCATCTTTTATGTTTTT
Reference ( family-896 ) : AACAACCATAAGT-GCACCTCATTTAANNTAAT-CAATTACATGCACTAATTATA----A-----------------CT----A--A-------------GTA--------------ATATATGGCTGCAATCGGTAAATACAAAAAGAAATA---ATA----A--TA---TTC-TT-G-TCGATT-AATCTACACTTTA----A-----TC-GTCAGTCTACANATTTAANCTTA-TCATGAGTATAAACAATGTTAGTAAATAGTAAGCACCGAATCC-AAAAA-------TA-T-AAAA-------------TA-GTTGTA--G-TA-----TTAAAC--AACTTAGTT---AANGATAAAC-TTCAAA-TTTGAATGTAG---ACACGTCTT-ATT-ATGTGAAATCATCTTCATTCATCACTCATTAATCATCACAGAAATGCGTAATCATCTTTTATGTTTTT
gi|1 : T-GCACTTCATTTAATATAAG-TAATTACATGCACTAATCATA----AA----------------CC----ATTA-------------ATATACAGGTTTATATTATATAAGGCTGCAATCAGTAAATACAAAAAGAAAAACAAATA----A--TA---TTT-TT-G-T-GATTTAATCTACACATTA----AAACAATC-ATCAGTCTACACATTTAATCTTA-TTATGAGTATAATCAACCTTTGTAAATAGTAAGCACCGAATCC-AAAAA-------AA-T-AAAAAA-----------TA-AAAAAA--A-CAA----TTAGTCG-AACCTAATT---AAAGATAAAC-TTCAAG-TTTGAATGTCG---ACACGTCTT-ATT-ATGTGAAATCATCCTCATTCATCACTCATTAAACATCACAGAAATGCGAAATCATCTTTTATGTTTTT
gi|10 : ATTTAATACAAG-TAGTTACATGCACTAATTATA----AACAA-------------TT----A--ATATAGGTTTAT--GTT--------------ATATACGGCTGCAATTGGTTAATACAAAAAGAAA------------A--TA---TTT-TT-G-TCATTT-AATCTTCACATAAGGAAA-----TC-TTCAGTCTA-ACATTTAATCTTA-TTATGAGTATAATCAATGTTTGTAAATAGTAAGCACCGAACCC-AAAAA-------TA---AAAA-------------TAAGTT--A--G-T-----------CG-AACTTAATT---AAAGATAAAC-TTCAAG-TTTGAATGTCG---ACACGTCTT-ATT-ATGTGAAATCATCCTCATTCATCACTCATTAATCATCACAGAAATGTGTAATCATCTTTTATGTTTTT
gi|11 : tT-GCACCTAATTTAAC-TAATGTAATTACATGCACTAATTATA----AA----------------CC----ATTA-------------ATAGGTTTTTTCTAT--ATATATGGCTGCAATTGGTAATTATAAAAA-AAATA---ATAGAAAA--TAAATTTT-TT-G-ATAATT-AATCTACATATTA----AAATAGTC-GTCGGTCTACAAATTTAATCTTA-TCCAGACTATAAACAATGTTATTAAATGGTAAGCACTGAATC-----AA-------TA-TAAAAA-------------TT-GTTGTT--A-TAT----TTATGC--AGATTAGTT---AAAAATAAACATTCAAA-TTTAAATATAA---ACAC--CTTAATT-GT-TGAAATCATCTTCAT-------TCATTAGTCATCACAGA
gi|12 : T-GCACTTCATTTAATATAAG-TAATTGCATGCACTAATTATA----AACCATCAATATACAGGTTT----A--T-------------GTT--------------ATATAAGGCTGCAATCGGTAAATACAAAAAGAAAAA---AAA----AAATA---TTT-TT-G-TCA-------------TTTA----A-----TC--------TACACATTAAAAC--ACTCGTCAGTTTACACA---TT---------TAAGCAGCAAATCC-AAAAA-------AA-A-AAAA-------------AA-ATT--A--G-T-----------CG-AACCTAATT---AAAGATAAAC-TTCAAG-TTTGAATGTCG---ACACGTCGT-ATT-ATGTGAAATCATCCTCATTCATCACTCATTAATCATCACAGAAATGTGTAATCATCTTTTATGTTTTT
gi|13 : T----A--T-------------GTA--------------ATATATGGCTGCAATCGGTAAATACAAAAAGAAATG---ATA----A--TA---TTT-TTTG-TTAACT-AATCTACATATTA----AAACAATT-GTCAGTTTACACATTTAATCTTA-TCATGAGTATAAACAATGTTAGTAAATATTAAGCAACTAATCCAAAAAA-------TA-G-AAAA-------------TA-GTTGTA--T-GA-----TTATGC--AACTTTGTT---AATAATAAAC-TTCAAA-TCTGAATGTCA---ACATGTCTT-AT----------TTATCTTCATTCATCACTCATTAATCATCTCAGAAATGCGTAATCATCTTTTATGTTTTT
gi|14 : ataaacctttaatatacaggttTAAT-CAAATACATGCACTAAT--------------------------------A--A-------------GTA--------------ATATATGGCTGCAATCGGTAAATATAAAAAGAAATA---ATA----A--TA---TTC-TTAG-TTGATT-AATCTACACTTTG----G-----TC-GTCAATCAACAAATTTAAAAATA-TCATGAGTATAAACAATGTTAGTAAACAGTAAGCACCGAATCC-AAAAA-------TA-T-AAAA-------------TA-GTTGTA--G-TA-----TTAAAC--AACTCAGTT---AATAATAAAC-TTCAAA-GTTGAAAATAG---ACACGACTT-ATT-ATGTG-AATCATCTCCATTCATCATACATTAATCATCACAGAAATGTGTAATCATCTTTTAAATTTTT
gi|15 : T-GCACTTCATTTAATATATG-TAATTACATGCACTAATTATA----AACCATTGATATACAGGTTT----A--T-------------GTT--------------ATATAAGGCTGCAATCGGTAAATACAAAAAGAAAAA---AAA----A--T-----------G-TCATTT-AATTTACACATTA----AAACAATC-GTCAGTCTACACATTTAATCTTA-GTATGAATATAATCAACGTTTGTAAATAGTATGCACCGAATCC-AAAAAAAAAC--TA-T-ATAA-------------T---TTTT-----TT-----TTAAGTCGAACCTTATT---AAAGATAAAC-TTCAAG-TTTGAATGTCG---ACACGTCTT-ATA-ATGTGAAATCATCCTCATTTAT
gi|16 : T-GCACCTCATTTAATATAAG-TTATTGCATGCATTAATTATA----A-----------------CTCTTTA--ATATATAGGTTTCTGTA--------------ATATATGGCTGCAATCGGTAAATACAAAA-GAAAT-----TA-------TA---TTT-TT-G-TTAATT-AATCTACATATTA----AAACAATC-TCCAGTTTACACACTTAATCTTA-TTGTGATTATAAACAATGTTATTAAATAGTAAGCACCGAATCA-AAAAA-------AA-T-GAAA-------------TA-AAAAAA--A-TAAT---TTATGC--AACTTAGTT---AATAATAAAC-TTCAAA-TTTGAATGTAA---ACTCGTCTT-AT
gi|17 : AACAACCATAAGT-GCACCTTATTTAAATTAAT-CAAATACATGCACTAAT--------------------------------A--A-------------GTA--------------ATATATGGCTGCAATCGGTAAATACAAAAAGAAATA---ATA----A--TA---TTC-TTAG-TTGA
gi|17 : -AAAAA-------TA-T-AAAA-------------TA-GTTGTA--G-TA-----TTAAAC--AACTCAGTT---AATAATAAAC-TTCAAA-GTTGAATATAG---ACACGACTT-ATT-ATGTG-AATCATCTCCATTCATCATACATTAATCATCACAGAAATGTGTAATCATCTTTTA-ATTTTTaaaatataaaatagttgtagtattaaacaactcagttaataataaacttcaaagttgaatatagacacgacttattatgtgaatcatctccattcatcatacattaatcatcacagaaatgtgtaatcatcttttaattttt
gi|18 : aacaaccataagtgcaccttatttaaattaatcaaatacatgcactaataagtaatatatggctgcaatcggtaaatacaaaaagaaataataatattcttagttgCTACATTTTATAC-A-----TTTATCAATCTATAACTTTAGTCTTA-T----------AATAATGATGATAAATAGTAAGCACGGAATCC-ATAGA------------AAAA-------------TA-GTTGTA--AATA-----T-AAAC--CTCTTGGTTTGCAAAAATG--T-TTTAAG-TT---ACATAAGTTACACGT--T-ATTTAT-TGAAGTAATTTCCATTCATCACCCATCAGTCATCAC
gi|18 : AATCATCTTTTATGTTTTTccaccattcatcacccatcagtcatcacagacattttgaatcatcttttatgttttt
gi|19 : ctacattttatacatttatcaatctataactttagtcttataataatgatgataaatagtaagcacggaatccatagaaaaatagttgtaaatataaacctcttggtttgcaaaaatgttttaagttacataagttacacgttatttattgaagtaatttccattcatcacccatcagtcatcacccaccattcatcacccatcagtcatcacagacattttgAACAAGCA-AAGTTGCACCTCATTTAACATAAG-TAATTACATGCACTGATTATA----AACCA-------------TT----A--ATAGGTTTAT----GTA--------------ATATATGGCTGCAATCGGTGAATACAAACTGAAATA---AAA----A--TAAT-TTCTTT-G-T--A-T-AAACTACA
gi|19 : ATAAAC-TACAAA-TTTGAATGCAA---ACTCTTCTT-ATTTAT-TGAAATCATCTTCATTCATCACTCATTATTCATCACATAAATGCGTAATCATCTTATATGTTTTTaatttgaatgcaaactcttcttatttattgaaatcatcttcattcatcactcattattcatcacataaatgcgtaatcatcttatatgttttt
gi|2 : aacaagcaaagttgcacctcatttaacataagtaattacatgcactgattataaaccattaataggtttatgtaatatatggctgcaatcggtgaatacaaactgaaataaaaataatttctttgt-GCACCTCATTTAATATAAG-AAACTACATGCACTAATTATA----AACCT-------------TT----A--ATATATAGGTTTATGTA--------------ATATATGGCTGCAACTGGTGAATACAATAAGAAATA---ATA----A--TA---GTT-TT-GGTCAATT-AATCTACAC-----------------------------ATTTAATCTTA-TCATGAGTATTAACAATGTTAGTAAATAGTAAGCACCGAATCC-AAAAAAAAAAGTTA-T-AAAAAAACAACAAAAAATA-GTTGTA--T-GA-----TAATGC--AACCTAGTT---GAA-ATAA-C-TTCAAG-TTTGAATGTCG---ACACGCCTT-ATC-ATTTGAAACCATCTTCATTGATCACTCATTAATCATCACAGAAATGCGTAATCATCTTTTATGTTTTT
gi|20 : AACAAGCATAGGT-GCACCTCATTTAACATAAG-TAATTACATGCACTGATTATAAACCA-----------------TT----A--ATAGGTTTAT----GTA--------------ATATATGGCTGCAATCGGTGAATACAAACTGAAATA---AAA----A--TAAT-TTCTTT-G-T--A-T-AAACTACA
gi|20 : ATAAAC-TACAAA-TTTGAATGCAA---ACTCTTCTT-ATTTAT-TGAAATCATCTTCATTCATCACTCATTATTCATCACAGAAATGCGTAATCATCTTATATGTTTTTaatttgaatgcaaactcttcttatttattgaaatcatcttcattcatcactcattattcatcacagaaatgcgtaatcatcttatatgttttt
gi|21 : aacaagcataggtgcacctcatttaacataagtaattacatgcactgattataaaccattaataggtttatgtaatatatggctgcaatcggtgaatacaaactgaaataaaaataatttctttgtTAAGCCCCGAATCC-AAAAA-------TA-A-AAAA-------------------GTA--A-AAAAAATTTAGTCG-AACTTAATT---AAAGATAAAC-TTCAAA-TTTGAATGTCG---ACACTTCTT-ATT-ATGTGAAATCATCTTCATTCAACACTCATTAATCATCACAGAAATCTG-AATCATTTCTAATGTTTTT
gi|22 : agccaaccagaggtgaattacctcgtatgacctttaatggaatgttaagcagctttaattcaactACACTTTA----A-----TC-GTCAATCTAAAAATTTAATCGTA-TCATGAGTATAAACAATGTTAGTAATTAGTAAGCACCGAATCC-AAAAA-------TA-G-AAAA-------------TA-GTTGTA--G-TA-----TTATAC--AACTTAGTT---AATAACAAAC-TTCAAG-GTTGTATATAG---ACACGACTT-ATT-ATGTG-AATCATCTTCATTCATCACTCATTAATCACCACAGAAATGTGTAATCATCTTTTATGTTTTT
gi|23 : ACACTTTA----A-----TC-GTCAATCTACAAATTTAAACTTA-TCATGAATATAAACAATGTTAGTAATTAGTAAGCACCGAATCC-AAAAA-------TA-T-AAAA-------------TA-GTTGTA--G-TA-----TTAAAC--AACTCAGTT---AATAACACAC-TTCAAA-GTTGAATATAG---ACACGACTT-ATT-ATGTG-AATCATCTCCATTCATCACTCATTAATCATCACAGAAATGTGTAATCATCTTTTATGTTTTT
gi|24 : ACTTTG----A-----TC-GTCAATCAACAAATTTAAAAATA-TCATGAGTATAAACAATGTTAGTAAACAGTAAGCACCGAATCC-AAAAA-------TA-T-AAAA-------------TA-GTTGTA--G-TA-----TTAAAC--AACTCAGTT---AATAATAAAC-TTCAAA-GTTGAATATAG---ACACGACTT-ATT-ATGTG-AATCATCTCCATTCATCATACATTAATCATCACAGAAATGTGTAATCATCTTTTAAATTTTT
gi|25 : -AAAAA-------TAAT-AAAACA-----------TA-GTTGTATGA-TA-----ATGAA----ATCTAGTA---AAAGATCAAC-TTCATG-TTTGAATGTCG---ACACGTCTT-ATT-ATTTGAAATCATCCTCATTCATCACTCATTAATCATCACAGAAATGCGTAATTATCTTTTATGTTTTT
gi|26 : gaatgacaaattgtttttatTAAATAATAAGCACCGAACCC-AAAAA-------TA---AAAA-------------TAAGTT--A--G-TC----------C--AAATTAATT---AAAGATAAAC-TTCAAG-TTTCAATATCG---ACAAATCTT-ATT-ATGTGAAATTATCCTCATTCATCACTCATTAATTATCACAGAAATGCGTAATCATCTTTTATGTTTTTa
gi|27 : ATAAAC-TACAAAATTTGAATGCAA---AC---TCTT-ATTTAT-TGAAATCATC---ATTCATCACTCATAATTCATCACAGAAATGCGTAATCATCTTTTATGTTTTT
gi|28 : TT-AT-TGAAATCATTTTCATTCGTCATTCATCAATAATTACAGAAATAAGTAATCATTCTTTATGCTTTT
gi|29 : aaacttttaagttatatAACAACCATAAGT-GCACCTTATTTAAATTAAT-CAA
gi|3 : T-GCACTTCATATAATATAAG-TAATTACATGCACTAATTATA----AACCA-------------TT----A--ATATACAGGTTTACGTT--------------ATATAAGGCTGCAATTGGTAAATACAAACTGAAAAA---AAAG---A--TT---TTT-TT-G-TCATTT-AATCTACACATTA----AAACAATC-ATCAGTCCACACATTTCATCTTA-TTATGAGTATAATCA-CATTTGTAAATAGTAAGCACAGAATAA-AAAAA-------AA-A-AAAA-------------AA-ATT--A--G-T-------CAAAC-----CTAATT---AAAGATAAAC-TTCAAG-TTTGAATGTTG---ACACGTCTT-ATT-ATGTGAAATCATCCTCATTCATCACTCATTAATCATCACAGAAATGTGTAATCATCTTTTATATTTTTa
gi|30 : CATCACAAAAATGTGTAATCATCTTTTATGTTTTT
gi|4 : T-GCACTTCATTTAATATAAG-TAATTACATGCACTAATTATA----AA----------------CC----ATTA-------------GTATACAAGTTTATGTTATATAAGGCTGCATTCGGTGAATACAAAAAGAAGAA---AAA----A--AA---T------G-TCATTT-AATCTACACATTA----AAACAATC-GTCAGTCTACACACTTAAGTTTA-TTATGAGTATAATCAACACTTGTAAATAGTAAGCACCGAAT---AAAAA-------AA-A-AAAA-------------GA------A--G-AA-----TTAGTCG-AACCTAATT---AAAGATAAAC-TTCAAA-TTTGAATGTCG---ACACGTCTT-ATT-ATGTGAACTCATCCTCATTCATCACGCATTAATCACCACAGAAATGTGTAATCATCTTTTATGTTTTT
gi|5 : AACAACCATAAGT-GCACCTTATTTAAATTAAT-CAAATACATGCACTAAT--------------------------------A--A-------------GTA--------------ATATATGGCTGCAATCGGTAAATATAAAAAGAAATA---ATA----A--TA---TTC-TTAG-TTGATT-AATCTACACTTTG----A-----TC-GTCAATCAACAAATTTAAAAATA-TCATGAGTATAAACAATGTTAGTAAACAGTAAGCACCGAATCC-AAAAA-------TA-T-AAAA-------------TA-GTTGTA--G-TA-----TTAAAC--AACTCAGTT---AATAATAAAC-TTCAAA-GTTGAATATAG---ACACGACTT-ATT-ATGTG-AATCATCTCCATTCATCATACATTAATCATCACAGAAATGTGTAATCATCTTTTAAATTTTT
gi|6 : AACAACCATAAGT-GCACCTTATTTAAATTAAT-CAAATACATGCACTAAT--------------------------------A--A-------------GTA--------------ATATATGGCTGCAATCGGTAAATATAAAAAGAAATA---ATA----A--TA---TTC-TTAG-TTGATT-AATCTACACTTTG----A-----TC-GTCAATCAACAAATTTAAAAATA-TCATGAGTATAAACAATGTTAGTAAACAGTAAGCACCGAATCC-AAAAA-------TA-T-AAAA-------------TA-GTTGTA--G-TA-----TTAAAC--AACTCAGTT---AATAATAAAC-TTCAAA-GTTGAATATAG---ACACGACTT-ATT-AGGTG-AATCATCTCCATTCATCATACATTAATCATCACAGAAATGTGTAATCATCTTTTAAATTTTT
gi|7 : AACAACCATATGT-GCACCTTATTTAAATTAAT-CAATTACATGCACTAAT--------------------------------A--A-------------GTA--------------ATATATGGCTGCAATCGGTAAATACAAAAAGAAATA---ATA----A--TA---TTC-TTAG-TCGATT-AATCTACACTTTA----G-----TC-GTCAATCTACAAACTTAAAATTA-TCATGAGTATAAACAATGTTAGTAATTAGTAAGCACCGAATCC-AAAAA-------TA-T-AAAA-------------TA-GTTGTA--G-TA-----TTAAAC--AACTCAGTT---AATAACAAAC-TTCAAA-GTTGAATATAG---ACACGACTT-ATT-AAGTG-AATCATCTACATTCATCACACATTAATCATCACAGAAATGTGTAATCATCTTTTATTTTTT
gi|8 : AACAACCATAAGT-GCACCTTATTTAAATTAAT-CAAATACATGCACTAAT--------------------------------A--A-------------GTA--------------ATATATGGCTGCAATCGGTAAATACAAAAAGAAATA---ATA----A--TA---TTC-TTAG-TTGATT-AATCTACACTTTG----G-----TC-GTCAACCAACAAATTTAAAAATA-TCATGAGTATAAATAATGTTAGTAATCAGTAAGCACCGAATCC-AAAAA-------TT-T-AAAA-------------TA-GTTGTA--G-TA-----TTAAAC--AACTTAATT---AATGATAAAC-TTCAAA-GTTGAATATAG---ACACGACTT-ATT-ATGTG-AATCATCTCCATTCATCATACATTAATCATCACAGAAATGTGTAATCATCTTTTA-ATTTTT
gi|9 : AACAACCATAAGT-GCACCTTATTTAAATTAAT-CAATTACATGCACTAAT--------------------------------A--A-------------GTA--------------GTATATGGCTGCAATCGGTAAATACAAAAAGAAATA---ATA----A--TA---TTC-TTAG-TTGATT-AATCTACACTTTG----G-----TC-GTCAATCTACAAATTTAAAAATA-TCATGAGTATAAACAATGTTAGTAATCAGTAAGCACCGAAT-C-AAAAA-------TA-T-TAAA-------------TA-GTTGTA--G-TA-----TTAAAC--AACTCAGTT---AATAATAAAC-TTCAAA-GTTGAATATAG---ACACGACTT-ATT-TTGTG-AATCATCTCCATTCATCACACATTAATCATCACAGAAATGTGTAATCATCTTTTA-ATTTT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 3333333333333333333333333333333333333333333333333333333333333333 1 3333333333 1111111111111 11 1
lowQualScore : 2 44 22 7777777777777777777777777777777777777777777777777777777777777777 22 0 333 44444 2 22 999 4 6 2 55 2 3 8888888888 2 0 1 333 2 0 1 9999999 555 3333333333333 3 1 22 1 99999 11 00 222 11 1 1 0 222 2 1 5 3 0 0 1 0
lowQualScore : . .. .. ................................................................ .. . ... ..... . .. ... . . . .. . . .......... . . . ... . . . ....... ... ............. . . .. . ..... .. .. ... .. . . . ... . . . . . . . .
lowQualScore : 4 88 66 8888888888888888888888888888888888888888888888888888888888888888 99 4 777 99999 1 99 555 2 8 1 77 2 9 0000000000 0 5 8 000 0 7 7 6666666 777 8888888888888 3 8 33 7 88888 77 66 999 88 5 5 9 666 1 5 9 9 0 5 2 7
consensus : AACAACCATAAGT-GCACCTCATTTAANATAA-GCAATTACATGCACTAATTATAA---A----------------T---TA--A-------------GTA--------------ATATAT--GGCTGCAATCGGTAAATACAAAAAGAAATA---AT----A-A--TA---TTC-TT-G-TCGATT-AATCTACACTTTA----A-----TC-GTCAGTCTACAAATTTAANCTTA-TCATGAGTATAAACAATGTTAGTAAATAGTAAGCACCGAATCC-AAAAA-------TA-T-AAAA-------------TA-GTTGTA--G-TA-----TTAAAC--AACTTAGTT---AANGATAAAC-TTCAAA-TTTGAATGTAG---ACACGTCTT-ATT-ATGTGAAATCATCTTCATTCATCACTCATTAATCATCACAGAAATGCGTAATCATCTTTTATGTTTTT
Reference ( family-896 ) : AACAACCATAAGT-GCACCTCATTTAANATAA-GCAATTACATGCACTAATTATAA---A----------------T---TA--A-------------GTA--------------ATATAT--GGCTGCAATCGGTAAATACAAAAAGAAATA---AT----A-A--TA---TTC-TT-G-TCGATT-AATCTACACTTTA----A-----TC-GTCAGTCTACAAATTTAANCTTA-TCATGAGTATAAACAATGTTAGTAAATAGTAAGCACCGAATCC-AAAAA-------TA-T-AAAA-------------TA-GTTGTA--G-TA-----TTAAAC--AACTTAGTT---AANGATAAAC-TTCAAA-TTTGAATGTAG---ACACGTCTT-ATT-ATGTGAAATCATCTTCATTCATCACTCATTAATCATCACAGAAATGCGTAATCATCTTTTATGTTTTT
gi|1 : T-GCACTTCATTTAATATAA-GTAATTACATGCACTAATCATAA---ACCA-------------T---TA--ATATACAGGTTT--ATA--------------TTATATAAGGCTGCAATCAGTAAATACAAAAAGAAAAACAAAT----A-A--TA---TTT-TT-G-T-GATTTAATCTACACATTA----AAACAATC-ATCAGTCTACACATTTAATCTTA-TTATGAGTATAATCAACCTTTGTAAATAGTAAGCACCGAATCC-AAAAA-------AA-T-AAAAAA-----------TA-AAAAAA--A-CAA----TTAGTCG-AACCTAATT---AAAGATAAAC-TTCAAG-TTTGAATGTCG---ACACGTCTT-ATT-ATGTGAAATCATCCTCATTCATCACTCATTAAACATCACAGAAATGCGAAATCATCTTTTATGTTTTT
gi|10 : ATTTAATACAA-GTAGTTACATGCACTAATTATAA---ACAA-------------T---TA--ATATAGGTTTAT--GTT--------------ATATAC--GGCTGCAATTGGTTAATACAAAAAGAAA-------------A--TA---TTT-TT-G-TCATTT-AATCTTCACATAAGGAAA-----TC-TTCAGTCTA-ACATTTAATCTTA-TTATGAGTATAATCAATGTTTGTAAATAGTAAGCACCGAACCC-AAAAA-------TA---AAAA-------------TAAGTT--A--G-T-----------CG-AACTTAATT---AAAGATAAAC-TTCAAG-TTTGAATGTCG---ACACGTCTT-ATT-ATGTGAAATCATCCTCATTCATCACTCATTAATCATCACAGAAATGTGTAATCATCTTTTATGTTTTT
gi|11 : tT-GCACCTAATTTAAC-TAATGTAATTACATGCACTAATTATAAACCA----------------T---TA--A--------------TAGGTTTTTTCTAT--ATATAT--GGCTGCAATTGGTAATTATAAAAA-AAATA---ATAGAAA-A--TAAATTTT-TT-G-ATAATT-AATCTACATATTA----AAATAGTC-GTCGGTCTACAAATTTAATCTTA-TCCAGACTATAAACAATGTTATTAAATGGTAAGCACTGAATC-----AA-------TA-TAAAAA-------------TT-GTTGTT--A-TAT----TTATGC--AGATTAGTT---AAAAATAAACATTCAAA-TTTAAATATAA---ACAC--CTTAATT-GT-TGAAATCATCTTCAT-------TCATTAGTCATCACAGA
gi|12 : T-GCACTTCATTTAATATAA-GTAATTGCATGCACTAATTATAA---ACCATCAATATACAGGTT---TA--T-------------GTT--------------ATATAA--GGCTGCAATCGGTAAATACAAAAAGAAAAA---AA----A-AAATA---TTT-TT-G-TCA-------------TTTA----A-----TC--------TACACATTAAAAC--ACTCGTCAGTTTACACA---TT---------TAAGCAGCAAATCC-AAAAA-------AA-A-AAAA-------------AA-ATT--A--G-T-----------CG-AACCTAATT---AAAGATAAAC-TTCAAG-TTTGAATGTCG---ACACGTCGT-ATT-ATGTGAAATCATCCTCATTCATCACTCATTAATCATCACAGAAATGTGTAATCATCTTTTATGTTTTT
gi|13 : ----------------T---TA--T-------------GTA--------------ATATAT--GGCTGCAATCGGTAAATACAAAAAGAAATG---AT----A-A--TA---TTT-TTTG-TTAACT-AATCTACATATTA----AAACAATT-GTCAGTTTACACATTTAATCTTA-TCATGAGTATAAACAATGTTAGTAAATATTAAGCAACTAATCCAAAAAA-------TA-G-AAAA-------------TA-GTTGTA--T-GA-----TTATGC--AACTTTGTT---AATAATAAAC-TTCAAA-TCTGAATGTCA---ACATGTCTT-AT----------TTATCTTCATTCATCACTCATTAATCATCTCAGAAATGCGTAATCATCTTTTATGTTTTT
gi|14 : ataaacctttaatatacaggtTAA-TCAAATACATGCACTAAT------------------------------A--A-------------GTA--------------ATATAT--GGCTGCAATCGGTAAATATAAAAAGAAATA---AT----A-A--TA---TTC-TTAG-TTGATT-AATCTACACTTTG----G-----TC-GTCAATCAACAAATTTAAAAATA-TCATGAGTATAAACAATGTTAGTAAACAGTAAGCACCGAATCC-AAAAA-------TA-T-AAAA-------------TA-GTTGTA--G-TA-----TTAAAC--AACTCAGTT---AATAATAAAC-TTCAAA-GTTGAAAATAG---ACACGACTT-ATT-ATGTG-AATCATCTCCATTCATCATACATTAATCATCACAGAAATGTGTAATCATCTTTTAAATTTTT
gi|15 : T-GCACTTCATTTAATATAT-GTAATTACATGCACTAATTATAA---ACCATTGATATACAGGTT---TA--T-------------GTT--------------ATATAA--GGCTGCAATCGGTAAATACAAAAAGAAAAA---AA----A-A--T-----------G-TCATTT-AATTTACACATTA----AAACAATC-GTCAGTCTACACATTTAATCTTA-GTATGAATATAATCAACGTTTGTAAATAGTATGCACCGAATCC-AAAAAAAAAC--TA-T-ATAA-------------T---TTTT-----TT-----TTAAGTCGAACCTTATT---AAAGATAAAC-TTCAAG-TTTGAATGTCG---ACACGTCTT-ATA-ATGTGAAATCATCCTCATTTAT
gi|16 : T-GCACCTCATTTAATATAA-GTTATTGCATGCATTAATTATAA---C----------------TCTTTA--ATATATAGGTTTCTGTA--------------ATATAT--GGCTGCAATCGGTAAATACAAAA-GAAAT-----T----A----TA---TTT-TT-G-TTAATT-AATCTACATATTA----AAACAATC-TCCAGTTTACACACTTAATCTTA-TTGTGATTATAAACAATGTTATTAAATAGTAAGCACCGAATCA-AAAAA-------AA-T-GAAA-------------TA-AAAAAA--A-TAAT---TTATGC--AACTTAGTT---AATAATAAAC-TTCAAA-TTTGAATGTAA---ACTCGTCTT-AT
gi|17 : AACAACCATAAGT-GCACCTTATTTAAATTAA-TCAAATACATGCACTAAT------------------------------A--A-------------GTA--------------ATATAT--GGCTGCAATCGGTAAATACAAAAAGAAATA---AT----A-A--TA---TTC-TTAG-TTGA
gi|17 : -AAAAA-------TA-T-AAAA-------------TA-GTTGTA--G-TA-----TTAAAC--AACTCAGTT---AATAATAAAC-TTCAAA-GTTGAATATAG---ACACGACTT-ATT-ATGTG-AATCATCTCCATTCATCATACATTAATCATCACAGAAATGTGTAATCATCTTTTA-ATTTTTaaaatataaaatagttgtagtattaaacaactcagttaataataaacttcaaagttgaatatagacacgacttattatgtgaatcatctccattcatcatacattaatcatcacagaaatgtgtaatcatcttttaattttt
gi|18 : aacaaccataagtgcaccttatttaaattaatcaaatacatgcactaataagtaatatatggctgcaatcggtaaatacaaaaagaaataataatattcttagttgCTACATTTTATAC-A-----TTTATCAATCTATAACTTTAGTCTTA-T----------AATAATGATGATAAATAGTAAGCACGGAATCC-ATAGA------------AAAA-------------TA-GTTGTA--AATA-----T-AAAC--CTCTTGGTTTGCAAAAATG--T-TTTAAG-TT---ACATAAGTTACACGT--T-ATTTAT-TGAAGTAATTTCCATTCATCACCCATCAGTCATCAC
gi|18 : AATCATCTTTTATGTTTTTccaccattcatcacccatcagtcatcacagacattttgaatcatcttttatgttttt
gi|19 : ctacattttatacatttatcaatctataactttagtcttataataatgatgataaatagtaagcacggaatccatagaaaaatagttgtaaatataaacctcttggtttgcaaaaatgttttaagttacataagttacacgttatttattgaagtaatttccattcatcacccatcagtcatcacccaccattcatcacccatcagtcatcacagacattttgAACAAGCA-AAGTTGCACCTCATTTAACATAA-GTAATTACATGCACTGATTATAAACCA----------------T---TA--ATAGGTTTAT----GTA--------------ATATAT--GGCTGCAATCGGTGAATACAAACTGAAATA---AA----A-A--TAAT-TTCTTT-G-T--A-T-AAACTACA
gi|19 : ATAAAC-TACAAA-TTTGAATGCAA---ACTCTTCTT-ATTTAT-TGAAATCATCTTCATTCATCACTCATTATTCATCACATAAATGCGTAATCATCTTATATGTTTTTaatttgaatgcaaactcttcttatttattgaaatcatcttcattcatcactcattattcatcacataaatgcgtaatcatcttatatgttttt
gi|2 : aacaagcaaagttgcacctcatttaacataagtaattacatgcactgattataaaccattaataggtttatgtaatatatggctgcaatcggtgaatacaaactgaaataaaaataatttctttgt-GCACCTCATTTAATATAA-GAAACTACATGCACTAATTATAA---ACCT-------------T---TA--ATATATAGGTTTATGTA--------------ATATAT--GGCTGCAACTGGTGAATACAATAAGAAATA---AT----A-A--TA---GTT-TT-GGTCAATT-AATCTACAC-----------------------------ATTTAATCTTA-TCATGAGTATTAACAATGTTAGTAAATAGTAAGCACCGAATCC-AAAAAAAAAAGTTA-T-AAAAAAACAACAAAAAATA-GTTGTA--T-GA-----TAATGC--AACCTAGTT---GAA-ATAA-C-TTCAAG-TTTGAATGTCG---ACACGCCTT-ATC-ATTTGAAACCATCTTCATTGATCACTCATTAATCATCACAGAAATGCGTAATCATCTTTTATGTTTTT
gi|20 : AACAAGCATAGGT-GCACCTCATTTAACATAA-GTAATTACATGCACTGATTATAAACCA----------------T---TA--ATAGGTTTAT----GTA--------------ATATAT--GGCTGCAATCGGTGAATACAAACTGAAATA---AA----A-A--TAAT-TTCTTT-G-T--A-T-AAACTACA
gi|20 : ATAAAC-TACAAA-TTTGAATGCAA---ACTCTTCTT-ATTTAT-TGAAATCATCTTCATTCATCACTCATTATTCATCACAGAAATGCGTAATCATCTTATATGTTTTTaatttgaatgcaaactcttcttatttattgaaatcatcttcattcatcactcattattcatcacagaaatgcgtaatcatcttatatgttttt
gi|21 : aacaagcataggtgcacctcatttaacataagtaattacatgcactgattataaaccattaataggtttatgtaatatatggctgcaatcggtgaatacaaactgaaataaaaataatttctttgtTAAGCCCCGAATCC-AAAAA-------TA-A-AAAA-------------------GTA--A-AAAAAATTTAGTCG-AACTTAATT---AAAGATAAAC-TTCAAA-TTTGAATGTCG---ACACTTCTT-ATT-ATGTGAAATCATCTTCATTCAACACTCATTAATCATCACAGAAATCTG-AATCATTTCTAATGTTTTT
gi|22 : agccaaccagaggtgaattacctcgtatgacctttaatggaatgttaagcagctttaattcaactACACTTTA----A-----TC-GTCAATCTAAAAATTTAATCGTA-TCATGAGTATAAACAATGTTAGTAATTAGTAAGCACCGAATCC-AAAAA-------TA-G-AAAA-------------TA-GTTGTA--G-TA-----TTATAC--AACTTAGTT---AATAACAAAC-TTCAAG-GTTGTATATAG---ACACGACTT-ATT-ATGTG-AATCATCTTCATTCATCACTCATTAATCACCACAGAAATGTGTAATCATCTTTTATGTTTTT
gi|23 : ACACTTTA----A-----TC-GTCAATCTACAAATTTAAACTTA-TCATGAATATAAACAATGTTAGTAATTAGTAAGCACCGAATCC-AAAAA-------TA-T-AAAA-------------TA-GTTGTA--G-TA-----TTAAAC--AACTCAGTT---AATAACACAC-TTCAAA-GTTGAATATAG---ACACGACTT-ATT-ATGTG-AATCATCTCCATTCATCACTCATTAATCATCACAGAAATGTGTAATCATCTTTTATGTTTTT
gi|24 : ACTTTG----A-----TC-GTCAATCAACAAATTTAAAAATA-TCATGAGTATAAACAATGTTAGTAAACAGTAAGCACCGAATCC-AAAAA-------TA-T-AAAA-------------TA-GTTGTA--G-TA-----TTAAAC--AACTCAGTT---AATAATAAAC-TTCAAA-GTTGAATATAG---ACACGACTT-ATT-ATGTG-AATCATCTCCATTCATCATACATTAATCATCACAGAAATGTGTAATCATCTTTTAAATTTTT
gi|25 : -AAAAA-------TAAT-AAAACA-----------TA-GTTGTATGA-TA-----ATGAA----ATCTAGTA---AAAGATCAAC-TTCATG-TTTGAATGTCG---ACACGTCTT-ATT-ATTTGAAATCATCCTCATTCATCACTCATTAATCATCACAGAAATGCGTAATTATCTTTTATGTTTTT
gi|26 : gaatgacaaattgtttttatTAAATAATAAGCACCGAACCC-AAAAA-------TA---AAAA-------------TAAGTT--A--G-TC----------C--AAATTAATT---AAAGATAAAC-TTCAAG-TTTCAATATCG---ACAAATCTT-ATT-ATGTGAAATTATCCTCATTCATCACTCATTAATTATCACAGAAATGCGTAATCATCTTTTATGTTTTTa
gi|27 : ATAAAC-TACAAAATTTGAATGCAA---AC---TCTT-ATTTAT-TGAAATCATC---ATTCATCACTCATAATTCATCACAGAAATGCGTAATCATCTTTTATGTTTTT
gi|28 : TT-AT-TGAAATCATTTTCATTCGTCATTCATCAATAATTACAGAAATAAGTAATCATTCTTTATGCTTTT
gi|29 : aaacttttaagttatatAACAACCATAAGT-GCACCTTATTTAAATTAA-TCAA
gi|3 : T-GCACTTCATATAATATAA-GTAATTACATGCACTAATTATAA---ACCA-------------T---TA--ATATACAGGTTTACGTT--------------ATATAA--GGCTGCAATTGGTAAATACAAACTGAAAAA---AA----AGA--TT---TTT-TT-G-TCATTT-AATCTACACATTA----AAACAATC-ATCAGTCCACACATTTCATCTTA-TTATGAGTATAATCA-CATTTGTAAATAGTAAGCACAGAATAA-AAAAA-------AA-A-AAAA-------------AA-ATT--A--G-T-------CAAAC-----CTAATT---AAAGATAAAC-TTCAAG-TTTGAATGTTG---ACACGTCTT-ATT-ATGTGAAATCATCCTCATTCATCACTCATTAATCATCACAGAAATGTGTAATCATCTTTTATATTTTTa
gi|30 : CATCACAAAAATGTGTAATCATCTTTTATGTTTTT
gi|4 : T-GCACTTCATTTAATATAA-GTAATTACATGCACTAATTATAA---A----------------C---CATTA-------------GTATACAAGTTTATGTTATATAA--GGCTGCATTCGGTGAATACAAAAAGAAGAA---AA----A-A--AA---T------G-TCATTT-AATCTACACATTA----AAACAATC-GTCAGTCTACACACTTAAGTTTA-TTATGAGTATAATCAACACTTGTAAATAGTAAGCACCGAAT---AAAAA-------AA-A-AAAA-------------GA------A--G-AA-----TTAGTCG-AACCTAATT---AAAGATAAAC-TTCAAA-TTTGAATGTCG---ACACGTCTT-ATT-ATGTGAACTCATCCTCATTCATCACGCATTAATCACCACAGAAATGTGTAATCATCTTTTATGTTTTT
gi|5 : AACAACCATAAGT-GCACCTTATTTAAATTAA-TCAAATACATGCACTAAT------------------------------A--A-------------GTA--------------ATATAT--GGCTGCAATCGGTAAATATAAAAAGAAATA---AT----A-A--TA---TTC-TTAG-TTGATT-AATCTACACTTTG----A-----TC-GTCAATCAACAAATTTAAAAATA-TCATGAGTATAAACAATGTTAGTAAACAGTAAGCACCGAATCC-AAAAA-------TA-T-AAAA-------------TA-GTTGTA--G-TA-----TTAAAC--AACTCAGTT---AATAATAAAC-TTCAAA-GTTGAATATAG---ACACGACTT-ATT-ATGTG-AATCATCTCCATTCATCATACATTAATCATCACAGAAATGTGTAATCATCTTTTAAATTTTT
gi|6 : AACAACCATAAGT-GCACCTTATTTAAATTAA-TCAAATACATGCACTAAT------------------------------A--A-------------GTA--------------ATATAT--GGCTGCAATCGGTAAATATAAAAAGAAATA---AT----A-A--TA---TTC-TTAG-TTGATT-AATCTACACTTTG----A-----TC-GTCAATCAACAAATTTAAAAATA-TCATGAGTATAAACAATGTTAGTAAACAGTAAGCACCGAATCC-AAAAA-------TA-T-AAAA-------------TA-GTTGTA--G-TA-----TTAAAC--AACTCAGTT---AATAATAAAC-TTCAAA-GTTGAATATAG---ACACGACTT-ATT-AGGTG-AATCATCTCCATTCATCATACATTAATCATCACAGAAATGTGTAATCATCTTTTAAATTTTT
gi|7 : AACAACCATATGT-GCACCTTATTTAAATTAA-TCAATTACATGCACTAAT------------------------------A--A-------------GTA--------------ATATAT--GGCTGCAATCGGTAAATACAAAAAGAAATA---AT----A-A--TA---TTC-TTAG-TCGATT-AATCTACACTTTA----G-----TC-GTCAATCTACAAACTTAAAATTA-TCATGAGTATAAACAATGTTAGTAATTAGTAAGCACCGAATCC-AAAAA-------TA-T-AAAA-------------TA-GTTGTA--G-TA-----TTAAAC--AACTCAGTT---AATAACAAAC-TTCAAA-GTTGAATATAG---ACACGACTT-ATT-AAGTG-AATCATCTACATTCATCACACATTAATCATCACAGAAATGTGTAATCATCTTTTATTTTTT
gi|8 : AACAACCATAAGT-GCACCTTATTTAAATTAA-TCAAATACATGCACTAAT------------------------------A--A-------------GTA--------------ATATAT--GGCTGCAATCGGTAAATACAAAAAGAAATA---AT----A-A--TA---TTC-TTAG-TTGATT-AATCTACACTTTG----G-----TC-GTCAACCAACAAATTTAAAAATA-TCATGAGTATAAATAATGTTAGTAATCAGTAAGCACCGAATCC-AAAAA-------TT-T-AAAA-------------TA-GTTGTA--G-TA-----TTAAAC--AACTTAATT---AATGATAAAC-TTCAAA-GTTGAATATAG---ACACGACTT-ATT-ATGTG-AATCATCTCCATTCATCATACATTAATCATCACAGAAATGTGTAATCATCTTTTA-ATTTTT
gi|9 : AACAACCATAAGT-GCACCTTATTTAAATTAA-TCAATTACATGCACTAAT------------------------------A--A-------------GTA--------------GTATAT--GGCTGCAATCGGTAAATACAAAAAGAAATA---AT----A-A--TA---TTC-TTAG-TTGATT-AATCTACACTTTG----G-----TC-GTCAATCTACAAATTTAAAAATA-TCATGAGTATAAACAATGTTAGTAATCAGTAAGCACCGAAT-C-AAAAA-------TA-T-TAAA-------------TA-GTTGTA--G-TA-----TTAAAC--AACTCAGTT---AATAATAAAC-TTCAAA-GTTGAATATAG---ACACGACTT-ATT-TTGTG-AATCATCTCCATTCATCACACATTAATCATCACAGAAATGTGTAATCATCTTTTA-ATTTT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 3333333333333333333333333333333333333333333333333333333333333333 1 3333333333 1111111111111 11 1
lowQualScore : 2 44 22 7777777777777777777777777777777777777777777777777777777777777777 22 0 333 44444 2 22 999 4 6 2 55 2 3 8888888888 2 0 1 333 2 0 1 9999999 555 3333333333333 3 1 22 1 99999 11 00 222 11 1 1 0 222 2 1 5 3 0 0 1 0
lowQualScore : . .. .. ................................................................ .. . ... ..... . .. ... . . . .. . . .......... . . . ... . . . ....... ... ............. . . .. . ..... .. .. ... .. . . . ... . . . . . . . .
lowQualScore : 4 88 66 8888888888888888888888888888888888888888888888888888888888888888 99 4 777 99999 1 99 555 2 8 1 77 2 9 0000000000 0 5 8 000 0 7 7 6666666 777 8888888888888 3 8 33 7 88888 77 66 999 88 5 5 9 666 1 5 9 9 0 5 2 7
consensus : AACAACCATAAGT-GCACCTCATTTAANATAA-GCAATTACATGCACTAATTATAA---A----------------T---TA--A-------------GTA--------------ATATAT--GGCTGCAATCGGTAAATACAAAAAGAAATA---AT----A-A--TA---TTC-TT-G-TCGATT-AATCTACACTTTA----A-----TC-GTCAGTCTACAAATTTAANCTTA-TCATGAGTATAAACAATGTTAGTAAATAGTAAGCACCGAATCC-AAAAA-------TA-T-AAAA-------------TA-GTTGTA--G-TA-----TTAAAC--AACTTAGTT---AANGATAAAC-TTCAAA-TTTGAATGTAG---ACACGTCTT-ATT-ATGTGAAATCATCTTCATTCATCACTCATTAATCATCACAGAAATGCGTAATCATCTTTTATGTTTTT
Reference ( family-896 ) : AACAACCATAAGT-GCACCTCATTTAANATAA-GCAATTACATGCACTAATTATAA---A----------------T---TA--A-------------GTA--------------ATATAT--GGCTGCAATCGGTAAATACAAAAAGAAATA---AT----A-A--TA---TTC-TT-G-TCGATT-AATCTACACTTTA----A-----TC-GTCAGTCTACAAATTTAANCTTA-TCATGAGTATAAACAATGTTAGTAAATAGTAAGCACCGAATCC-AAAAA-------TA-T-AAAA-------------TA-GTTGTA--G-TA-----TTAAAC--AACTTAGTT---AANGATAAAC-TTCAAA-TTTGAATGTAG---ACACGTCTT-ATT-ATGTGAAATCATCTTCATTCATCACTCATTAATCATCACAGAAATGCGTAATCATCTTTTATGTTTTT
gi|1 : T-GCACTTCATTTAATATAA-GTAATTACATGCACTAATCATAA---ACCA-------------T---TA--ATATACAGGTTT--ATA--------------TTATATAAGGCTGCAATCAGTAAATACAAAAAGAAAAACAAAT----A-A--TA---TTT-TT-G-T-GATTTAATCTACACATTA----AAACAATC-ATCAGTCTACACATTTAATCTTA-TTATGAGTATAATCAACCTTTGTAAATAGTAAGCACCGAATCC-AAAAA-------AA-T-AAAAAA-----------TA-AAAAAA--A-CAA----TTAGTCG-AACCTAATT---AAAGATAAAC-TTCAAG-TTTGAATGTCG---ACACGTCTT-ATT-ATGTGAAATCATCCTCATTCATCACTCATTAAACATCACAGAAATGCGAAATCATCTTTTATGTTTTT
gi|10 : ATTTAATACAA-GTAGTTACATGCACTAATTATAA---ACAA-------------T---TA--ATATAGGTTTAT--GTT--------------ATATAC--GGCTGCAATTGGTTAATACAAAAAGAAA-------------A--TA---TTT-TT-G-TCATTT-AATCTTCACATAAGGAAA-----TC-TTCAGTCTA-ACATTTAATCTTA-TTATGAGTATAATCAATGTTTGTAAATAGTAAGCACCGAACCC-AAAAA-------TA---AAAA-------------TAAGTT--A--G-T-----------CG-AACTTAATT---AAAGATAAAC-TTCAAG-TTTGAATGTCG---ACACGTCTT-ATT-ATGTGAAATCATCCTCATTCATCACTCATTAATCATCACAGAAATGTGTAATCATCTTTTATGTTTTT
gi|11 : tT-GCACCTAATTTAAC-TAATGTAATTACATGCACTAATTATAAACCA----------------T---TA--A--------------TAGGTTTTTTCTAT--ATATAT--GGCTGCAATTGGTAATTATAAAAA-AAATA---ATAGAAA-A--TAAATTTT-TT-G-ATAATT-AATCTACATATTA----AAATAGTC-GTCGGTCTACAAATTTAATCTTA-TCCAGACTATAAACAATGTTATTAAATGGTAAGCACTGAATC-----AA-------TA-TAAAAA-------------TT-GTTGTT--A-TAT----TTATGC--AGATTAGTT---AAAAATAAACATTCAAA-TTTAAATATAA---ACAC--CTTAATT-GT-TGAAATCATCTTCAT-------TCATTAGTCATCACAGA
gi|12 : T-GCACTTCATTTAATATAA-GTAATTGCATGCACTAATTATAA---ACCATCAATATACAGGTT---TA--T-------------GTT--------------ATATAA--GGCTGCAATCGGTAAATACAAAAAGAAAAA---AA----A-AAATA---TTT-TT-G-TCA-------------TTTA----A-----TC--------TACACATTAAAAC--ACTCGTCAGTTTACACA---TT---------TAAGCAGCAAATCC-AAAAA-------AA-A-AAAA-------------AA-ATT--A--G-T-----------CG-AACCTAATT---AAAGATAAAC-TTCAAG-TTTGAATGTCG---ACACGTCGT-ATT-ATGTGAAATCATCCTCATTCATCACTCATTAATCATCACAGAAATGTGTAATCATCTTTTATGTTTTT
gi|13 : ----------------T---TA--T-------------GTA--------------ATATAT--GGCTGCAATCGGTAAATACAAAAAGAAATG---AT----A-A--TA---TTT-TTTG-TTAACT-AATCTACATATTA----AAACAATT-GTCAGTTTACACATTTAATCTTA-TCATGAGTATAAACAATGTTAGTAAATATTAAGCAACTAATCCAAAAAA-------TA-G-AAAA-------------TA-GTTGTA--T-GA-----TTATGC--AACTTTGTT---AATAATAAAC-TTCAAA-TCTGAATGTCA---ACATGTCTT-AT----------TTATCTTCATTCATCACTCATTAATCATCTCAGAAATGCGTAATCATCTTTTATGTTTTT
gi|14 : ataaacctttaatatacaggtTAA-TCAAATACATGCACTAAT------------------------------A--A-------------GTA--------------ATATAT--GGCTGCAATCGGTAAATATAAAAAGAAATA---AT----A-A--TA---TTC-TTAG-TTGATT-AATCTACACTTTG----G-----TC-GTCAATCAACAAATTTAAAAATA-TCATGAGTATAAACAATGTTAGTAAACAGTAAGCACCGAATCC-AAAAA-------TA-T-AAAA-------------TA-GTTGTA--G-TA-----TTAAAC--AACTCAGTT---AATAATAAAC-TTCAAA-GTTGAAAATAG---ACACGACTT-ATT-ATGTG-AATCATCTCCATTCATCATACATTAATCATCACAGAAATGTGTAATCATCTTTTAAATTTTT
gi|15 : T-GCACTTCATTTAATATAT-GTAATTACATGCACTAATTATAA---ACCATTGATATACAGGTT---TA--T-------------GTT--------------ATATAA--GGCTGCAATCGGTAAATACAAAAAGAAAAA---AA----A-A--T-----------G-TCATTT-AATTTACACATTA----AAACAATC-GTCAGTCTACACATTTAATCTTA-GTATGAATATAATCAACGTTTGTAAATAGTATGCACCGAATCC-AAAAAAAAAC--TA-T-ATAA-------------T---TTTT-----TT-----TTAAGTCGAACCTTATT---AAAGATAAAC-TTCAAG-TTTGAATGTCG---ACACGTCTT-ATA-ATGTGAAATCATCCTCATTTAT
gi|16 : T-GCACCTCATTTAATATAA-GTTATTGCATGCATTAATTATAA---C----------------TCTTTA--ATATATAGGTTTCTGTA--------------ATATAT--GGCTGCAATCGGTAAATACAAAA-GAAAT-----T----A----TA---TTT-TT-G-TTAATT-AATCTACATATTA----AAACAATC-TCCAGTTTACACACTTAATCTTA-TTGTGATTATAAACAATGTTATTAAATAGTAAGCACCGAATCA-AAAAA-------AA-T-GAAA-------------TA-AAAAAA--A-TAAT---TTATGC--AACTTAGTT---AATAATAAAC-TTCAAA-TTTGAATGTAA---ACTCGTCTT-AT
gi|17 : AACAACCATAAGT-GCACCTTATTTAAATTAA-TCAAATACATGCACTAAT------------------------------A--A-------------GTA--------------ATATAT--GGCTGCAATCGGTAAATACAAAAAGAAATA---AT----A-A--TA---TTC-TTAG-TTGA
gi|17 : -AAAAA-------TA-T-AAAA-------------TA-GTTGTA--G-TA-----TTAAAC--AACTCAGTT---AATAATAAAC-TTCAAA-GTTGAATATAG---ACACGACTT-ATT-ATGTG-AATCATCTCCATTCATCATACATTAATCATCACAGAAATGTGTAATCATCTTTTA-ATTTTTaaaatataaaatagttgtagtattaaacaactcagttaataataaacttcaaagttgaatatagacacgacttattatgtgaatcatctccattcatcatacattaatcatcacagaaatgtgtaatcatcttttaattttt
gi|18 : aacaaccataagtgcaccttatttaaattaatcaaatacatgcactaataagtaatatatggctgcaatcggtaaatacaaaaagaaataataatattcttagttgCTACATTTTATAC-A-----TTTATCAATCTATAACTTTAGTCTTA-T----------AATAATGATGATAAATAGTAAGCACGGAATCC-ATAGA------------AAAA-------------TA-GTTGTA--AATA-----T-AAAC--CTCTTGGTTTGCAAAAATG--T-TTTAAG-TT---ACATAAGTTACACGT--T-ATTTAT-TGAAGTAATTTCCATTCATCACCCATCAGTCATCAC
gi|18 : AATCATCTTTTATGTTTTTccaccattcatcacccatcagtcatcacagacattttgaatcatcttttatgttttt
gi|19 : ctacattttatacatttatcaatctataactttagtcttataataatgatgataaatagtaagcacggaatccatagaaaaatagttgtaaatataaacctcttggtttgcaaaaatgttttaagttacataagttacacgttatttattgaagtaatttccattcatcacccatcagtcatcacccaccattcatcacccatcagtcatcacagacattttgAACAAGCA-AAGTTGCACCTCATTTAACATAA-GTAATTACATGCACTGATTATAAACCA----------------T---TA--ATAGGTTTAT----GTA--------------ATATAT--GGCTGCAATCGGTGAATACAAACTGAAATA---AA----A-A--TAAT-TTCTTT-G-T--A-T-AAACTACA
gi|19 : ATAAAC-TACAAA-TTTGAATGCAA---ACTCTTCTT-ATTTAT-TGAAATCATCTTCATTCATCACTCATTATTCATCACATAAATGCGTAATCATCTTATATGTTTTTaatttgaatgcaaactcttcttatttattgaaatcatcttcattcatcactcattattcatcacataaatgcgtaatcatcttatatgttttt
gi|2 : aacaagcaaagttgcacctcatttaacataagtaattacatgcactgattataaaccattaataggtttatgtaatatatggctgcaatcggtgaatacaaactgaaataaaaataatttctttgt-GCACCTCATTTAATATAA-GAAACTACATGCACTAATTATAA---ACCT-------------T---TA--ATATATAGGTTTATGTA--------------ATATAT--GGCTGCAACTGGTGAATACAATAAGAAATA---AT----A-A--TA---GTT-TT-GGTCAATT-AATCTACAC-----------------------------ATTTAATCTTA-TCATGAGTATTAACAATGTTAGTAAATAGTAAGCACCGAATCC-AAAAAAAAAAGTTA-T-AAAAAAACAACAAAAAATA-GTTGTA--T-GA-----TAATGC--AACCTAGTT---GAA-ATAA-C-TTCAAG-TTTGAATGTCG---ACACGCCTT-ATC-ATTTGAAACCATCTTCATTGATCACTCATTAATCATCACAGAAATGCGTAATCATCTTTTATGTTTTT
gi|20 : AACAAGCATAGGT-GCACCTCATTTAACATAA-GTAATTACATGCACTGATTATAAACCA----------------T---TA--ATAGGTTTAT----GTA--------------ATATAT--GGCTGCAATCGGTGAATACAAACTGAAATA---AA----A-A--TAAT-TTCTTT-G-T--A-T-AAACTACA
gi|20 : ATAAAC-TACAAA-TTTGAATGCAA---ACTCTTCTT-ATTTAT-TGAAATCATCTTCATTCATCACTCATTATTCATCACAGAAATGCGTAATCATCTTATATGTTTTTaatttgaatgcaaactcttcttatttattgaaatcatcttcattcatcactcattattcatcacagaaatgcgtaatcatcttatatgttttt
gi|21 : aacaagcataggtgcacctcatttaacataagtaattacatgcactgattataaaccattaataggtttatgtaatatatggctgcaatcggtgaatacaaactgaaataaaaataatttctttgtTAAGCCCCGAATCC-AAAAA-------TA-A-AAAA-------------------GTA--A-AAAAAATTTAGTCG-AACTTAATT---AAAGATAAAC-TTCAAA-TTTGAATGTCG---ACACTTCTT-ATT-ATGTGAAATCATCTTCATTCAACACTCATTAATCATCACAGAAATCTG-AATCATTTCTAATGTTTTT
gi|22 : agccaaccagaggtgaattacctcgtatgacctttaatggaatgttaagcagctttaattcaactACACTTTA----A-----TC-GTCAATCTAAAAATTTAATCGTA-TCATGAGTATAAACAATGTTAGTAATTAGTAAGCACCGAATCC-AAAAA-------TA-G-AAAA-------------TA-GTTGTA--G-TA-----TTATAC--AACTTAGTT---AATAACAAAC-TTCAAG-GTTGTATATAG---ACACGACTT-ATT-ATGTG-AATCATCTTCATTCATCACTCATTAATCACCACAGAAATGTGTAATCATCTTTTATGTTTTT
gi|23 : ACACTTTA----A-----TC-GTCAATCTACAAATTTAAACTTA-TCATGAATATAAACAATGTTAGTAATTAGTAAGCACCGAATCC-AAAAA-------TA-T-AAAA-------------TA-GTTGTA--G-TA-----TTAAAC--AACTCAGTT---AATAACACAC-TTCAAA-GTTGAATATAG---ACACGACTT-ATT-ATGTG-AATCATCTCCATTCATCACTCATTAATCATCACAGAAATGTGTAATCATCTTTTATGTTTTT
gi|24 : ACTTTG----A-----TC-GTCAATCAACAAATTTAAAAATA-TCATGAGTATAAACAATGTTAGTAAACAGTAAGCACCGAATCC-AAAAA-------TA-T-AAAA-------------TA-GTTGTA--G-TA-----TTAAAC--AACTCAGTT---AATAATAAAC-TTCAAA-GTTGAATATAG---ACACGACTT-ATT-ATGTG-AATCATCTCCATTCATCATACATTAATCATCACAGAAATGTGTAATCATCTTTTAAATTTTT
gi|25 : -AAAAA-------TAAT-AAAACA-----------TA-GTTGTATGA-TA-----ATGAA----ATCTAGTA---AAAGATCAAC-TTCATG-TTTGAATGTCG---ACACGTCTT-ATT-ATTTGAAATCATCCTCATTCATCACTCATTAATCATCACAGAAATGCGTAATTATCTTTTATGTTTTT
gi|26 : gaatgacaaattgtttttatTAAATAATAAGCACCGAACCC-AAAAA-------TA---AAAA-------------TAAGTT--A--G-TC----------C--AAATTAATT---AAAGATAAAC-TTCAAG-TTTCAATATCG---ACAAATCTT-ATT-ATGTGAAATTATCCTCATTCATCACTCATTAATTATCACAGAAATGCGTAATCATCTTTTATGTTTTTa
gi|27 : ATAAAC-TACAAAATTTGAATGCAA---AC---TCTT-ATTTAT-TGAAATCATC---ATTCATCACTCATAATTCATCACAGAAATGCGTAATCATCTTTTATGTTTTT
gi|28 : TT-AT-TGAAATCATTTTCATTCGTCATTCATCAATAATTACAGAAATAAGTAATCATTCTTTATGCTTTT
gi|29 : aaacttttaagttatatAACAACCATAAGT-GCACCTTATTTAAATTAA-TCAA
gi|3 : T-GCACTTCATATAATATAA-GTAATTACATGCACTAATTATAA---ACCA-------------T---TA--ATATACAGGTTTACGTT--------------ATATAA--GGCTGCAATTGGTAAATACAAACTGAAAAA---AA----AGA--TT---TTT-TT-G-TCATTT-AATCTACACATTA----AAACAATC-ATCAGTCCACACATTTCATCTTA-TTATGAGTATAATCA-CATTTGTAAATAGTAAGCACAGAATAA-AAAAA-------AA-A-AAAA-------------AA-ATT--A--G-T-------CAAAC-----CTAATT---AAAGATAAAC-TTCAAG-TTTGAATGTTG---ACACGTCTT-ATT-ATGTGAAATCATCCTCATTCATCACTCATTAATCATCACAGAAATGTGTAATCATCTTTTATATTTTTa
gi|30 : CATCACAAAAATGTGTAATCATCTTTTATGTTTTT
gi|4 : T-GCACTTCATTTAATATAA-GTAATTACATGCACTAATTATAA---A----------------C---CATTA-------------GTATACAAGTTTATGTTATATAA--GGCTGCATTCGGTGAATACAAAAAGAAGAA---AA----A-A--AA---T------G-TCATTT-AATCTACACATTA----AAACAATC-GTCAGTCTACACACTTAAGTTTA-TTATGAGTATAATCAACACTTGTAAATAGTAAGCACCGAAT---AAAAA-------AA-A-AAAA-------------GA------A--G-AA-----TTAGTCG-AACCTAATT---AAAGATAAAC-TTCAAA-TTTGAATGTCG---ACACGTCTT-ATT-ATGTGAACTCATCCTCATTCATCACGCATTAATCACCACAGAAATGTGTAATCATCTTTTATGTTTTT
gi|5 : AACAACCATAAGT-GCACCTTATTTAAATTAA-TCAAATACATGCACTAAT------------------------------A--A-------------GTA--------------ATATAT--GGCTGCAATCGGTAAATATAAAAAGAAATA---AT----A-A--TA---TTC-TTAG-TTGATT-AATCTACACTTTG----A-----TC-GTCAATCAACAAATTTAAAAATA-TCATGAGTATAAACAATGTTAGTAAACAGTAAGCACCGAATCC-AAAAA-------TA-T-AAAA-------------TA-GTTGTA--G-TA-----TTAAAC--AACTCAGTT---AATAATAAAC-TTCAAA-GTTGAATATAG---ACACGACTT-ATT-ATGTG-AATCATCTCCATTCATCATACATTAATCATCACAGAAATGTGTAATCATCTTTTAAATTTTT
gi|6 : AACAACCATAAGT-GCACCTTATTTAAATTAA-TCAAATACATGCACTAAT------------------------------A--A-------------GTA--------------ATATAT--GGCTGCAATCGGTAAATATAAAAAGAAATA---AT----A-A--TA---TTC-TTAG-TTGATT-AATCTACACTTTG----A-----TC-GTCAATCAACAAATTTAAAAATA-TCATGAGTATAAACAATGTTAGTAAACAGTAAGCACCGAATCC-AAAAA-------TA-T-AAAA-------------TA-GTTGTA--G-TA-----TTAAAC--AACTCAGTT---AATAATAAAC-TTCAAA-GTTGAATATAG---ACACGACTT-ATT-AGGTG-AATCATCTCCATTCATCATACATTAATCATCACAGAAATGTGTAATCATCTTTTAAATTTTT
gi|7 : AACAACCATATGT-GCACCTTATTTAAATTAA-TCAATTACATGCACTAAT------------------------------A--A-------------GTA--------------ATATAT--GGCTGCAATCGGTAAATACAAAAAGAAATA---AT----A-A--TA---TTC-TTAG-TCGATT-AATCTACACTTTA----G-----TC-GTCAATCTACAAACTTAAAATTA-TCATGAGTATAAACAATGTTAGTAATTAGTAAGCACCGAATCC-AAAAA-------TA-T-AAAA-------------TA-GTTGTA--G-TA-----TTAAAC--AACTCAGTT---AATAACAAAC-TTCAAA-GTTGAATATAG---ACACGACTT-ATT-AAGTG-AATCATCTACATTCATCACACATTAATCATCACAGAAATGTGTAATCATCTTTTATTTTTT
gi|8 : AACAACCATAAGT-GCACCTTATTTAAATTAA-TCAAATACATGCACTAAT------------------------------A--A-------------GTA--------------ATATAT--GGCTGCAATCGGTAAATACAAAAAGAAATA---AT----A-A--TA---TTC-TTAG-TTGATT-AATCTACACTTTG----G-----TC-GTCAACCAACAAATTTAAAAATA-TCATGAGTATAAATAATGTTAGTAATCAGTAAGCACCGAATCC-AAAAA-------TT-T-AAAA-------------TA-GTTGTA--G-TA-----TTAAAC--AACTTAATT---AATGATAAAC-TTCAAA-GTTGAATATAG---ACACGACTT-ATT-ATGTG-AATCATCTCCATTCATCATACATTAATCATCACAGAAATGTGTAATCATCTTTTA-ATTTTT
gi|9 : AACAACCATAAGT-GCACCTTATTTAAATTAA-TCAATTACATGCACTAAT------------------------------A--A-------------GTA--------------GTATAT--GGCTGCAATCGGTAAATACAAAAAGAAATA---AT----A-A--TA---TTC-TTAG-TTGATT-AATCTACACTTTG----G-----TC-GTCAATCTACAAATTTAAAAATA-TCATGAGTATAAACAATGTTAGTAATCAGTAAGCACCGAAT-C-AAAAA-------TA-T-TAAA-------------TA-GTTGTA--G-TA-----TTAAAC--AACTCAGTT---AATAATAAAC-TTCAAA-GTTGAATATAG---ACACGACTT-ATT-TTGTG-AATCATCTCCATTCATCACACATTAATCATCACAGAAATGTGTAATCATCTTTTA-ATTTT
blockSeqs : T TA TG TATAAACCATCAATATACAGGTTTATGTT . . TAGAA G AA AAT T T G CA . A AAATAG T C TCT C A AAAAAGT TA AAACAACAAAAAA A G TG A AAAAT TG CG TGC AG A A GTT T A T G A T
blockSeqs : . TA G TATAAACCATTGATATACAGGTTTATGTT . . A . . AT T A . TA . A AAACAA . A TCT . . AAAAC AT CA A G . . AT TG G . AA . . . T . T G A T
blockSeqs : . TA G TATAACTCTTTAATATATAGGTTTCTGTA . . T . . AT . A . CA . T AAACAA . C TCT . . . A . . G . . T AA G . AG . . . T . T G A C
blockSeqs : . TA T TATAAACCTTTAATATATAGGTTTATGTA . . T . . . . A . TA . A AAACAA . C AAA . . . G . . T . . . AG G . TA . . . A . T G A T
blockSeqs : . AT G TATAAACCATTAATATACAGGTTTACGTT . . A . . . . A . TG . T AAACAA . A TCT . . . T . . A . . . TG G . TA . . . T . . G A T
blockSeqs : . CA G TATAAACCATTAGTATACAAGTTTATGTT . . T . . . . A . CA . A AAACAA . C TCT . . . T . . G . . . AA . . AG . . . T . . T A C
blockSeqs : . TA T TATAAACAATTAATATAGGTTTATGTT . . T . . . . A . TA . A GGAAA . C TCT . . . T . . G . . . AA . . TA . . . A . . G A C
blockSeqs : . CA G TATAAACCATTAATAGGTTTTTTCTAT . . A . . . . A . TG . T TACA . A TCT . . . T . . G . . . TG . . TA . . . T . . G A C
blockSeqs : . AT G TATAAACCATTAATAGGTTTATGTA . . T . . . . . . CA . T A . A TCG . . . T . . G . . . GT . . AA . . . T . . G A T
blockSeqs : . TA G TATAAACCATTAATAGGTTTATGTA . . A . . . . . . CA . T G . A ACT . . . A . . G . . . TA . . AG . . . C . . G A T
blockSeqs : . TA T AAGTA . . A . . . . . . CA . T A . A AAA . . . G . . G . . . AA . . TA . . . T . . T A T
blockSeqs : . AT G AAGTA . . A . . . . . . TG . A A . C TCT . . . T . . G . . . AA . . TA . . . T . . G A T
blockSeqs : . AT G AAGTA . . T . . . . . . TG . A A . C GTT . . . T . . G . . . AA . . TA . . . A . . G A C
blockSeqs : . AT T AAGTA . . T . . . . . . CG . T A . A AAA . . . A . . G . . . AA . . AG . . . A . . G A C
blockSeqs : . AT T AAGTA . . T . . . . . . TG . T A . A AAA . . . A . . G . . . GT . . AG . . . A . . G A C
blockSeqs : . AT T AAGTA . . T . . . . . . TG . T G . A AAT . . . T . . G . . . AA . . AG . . . T . . G . A
blockSeqs : C T AAGTA . . T . . . . . . . . T G . A AAA . . . T . . G . . . AA . . AG . . . T . . G . T
blockSeqs : T . . . . . . . . . . T G . A AAA . . . T . . G . . . AA . . TA . . . T . . G . T
blockSeqs : . . . . AC . . . T . . . . . . AA . . TA . . . T . . G . T
blockSeqs : . . T . . . . . . AA . . TA . . . T . . . . T
blockSeqs : . . . . . . . . . . . . TG . . . A . . . . T
blockSeqs : . . . . . . . . . . . . TA . . . A . . . . T
blockSeqs : . . . . . . . . . . . . A . . . A . . . . T
blockSeqs : . . . A . . . . T
blockSeqs : . . . A . . . .
blockSeqs : . . . . . . . .
blockSeqCons : ** *** CG A********* ************* ***** **
originalCons : AACAACCATAAGT-GCACCTCATTTAANATAA-GCAATTACATGCACTAATTATAA---A----------------T---TA--A-------------GTA--------------ATATAT--GGCTGCAATCGGTAAATACAAAAAGAAATA---AT----A-A--TA---TTC-TT-G-TCGATT-AATCTACACTTTA----A-----TC-GTCAGTCTACAAATTTAANCTTA-TCATGAGTATAAACAATGTTAGTAAATAGTAAGCACCGAATCC-AAAAA-------TA-T-AAAA-------------TA-GTTGTA--G-TA-----TTAAAC--AACTTAGTT---AANGATAAAC-TTCAAA-TTTGAATGTAG---ACACGTCTT-ATT-ATGTGAAATCATCTTCATTCATCACTCATTAATCATCACAGAAATGCGTAATCATCTTTTATGTTTTT
finalCons : AACAACCATAAGT-GCACCTCATTTAANATAA-GCAATTACATGCACTAATTATAA---A----------------T---TA--A-------------GTA--------------ATATAT--GGCTGCAATCGGTAAATACAAAAAGAAATA---AT----A-A--TA---TTC-TT-G-TCGATT-AATCTACACTTTAA---------TC-GTCAGTCTACAAATTTAANCTTA-TCATGAGTATAAACAATGTTAGTAAATAGTAAGCACCGAATCC-AAAAA-------TA-T-AAAA-------------TA-GTTGTA--G-TA-----TTAAAC--AACTTAGTT---AANGATAAAC-TTCAAA-TTTGAATGTAG---ACACGTCTT-ATT-ATGTGAAATCATCTTCATTCATCACTCATTAATCATCACAGAAATGCGTAATCATCTTTTATGTTTTT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 3333333333333333333333333333333333333333333333333333333333333333 1 3333333333 1111111111111 11 1
lowQualScore : 2 44 22 7777777777777777777777777777777777777777777777777777777777777777 22 0 333 44444 2 22 999 4 6 2 55 2 3 8888888888 2 0 1 333 2 0 1 9999999 555 3333333333333 3 1 22 1 99999 11 00 222 11 1 1 0 222 2 1 5 3 0 0 1 0
lowQualScore : . .. .. ................................................................ .. . ... ..... . .. ... . . . .. . . .......... . . . ... . . . ....... ... ............. . . .. . ..... .. .. ... .. . . . ... . . . . . . . .
lowQualScore : 4 88 66 8888888888888888888888888888888888888888888888888888888888888888 99 4 777 99999 1 99 555 2 8 1 77 2 9 0000000000 0 5 8 000 0 7 7 6666666 777 8888888888888 3 8 33 7 88888 77 66 999 88 5 5 9 666 1 5 9 9 0 5 2 7
consensus : AACAACCATAAGT-GCACCTCATTTAANATAA-GCAATTACATGCACTAATTATAA---A----------------T---TA--A-------------GTA--------------ATATAT--GGCTGCAATCGGTAAATACAAAAAGAAATA---AT----A-A--TA---TTC-TT-G-TCGATT-AATCTACACTTTA----A-----TC-GTCAGTCTACAAATTTAANCTTA-TCATGAGTATAAACAATGTTAGTAAATAGTAAGCACCGAATCC-AAAAA-------TA-T-AAAA-------------TA-GTTGTA--G-TA-----TTAAAC--AACTTAGTT---AANGATAAAC-TTCAAA-TTTGAATGTAG---ACACGTCTT-ATT-ATGTGAAATCATCTTCATTCATCACTCATTAATCATCACAGAAATGCGTAATCATCTTTTATGTTTTT
Reference ( family-896 ) : AACAACCATAAGT-GCACCTCATTTAANATAA-GCAATTACATGCACTAATTATAA---A----------------T---TA--A-------------GTA--------------ATATAT--GGCTGCAATCGGTAAATACAAAAAGAAATA---AT----A-A--TA---TTC-TT-G-TCGATT-AATCTACACTTTA----A-----TC-GTCAGTCTACAAATTTAANCTTA-TCATGAGTATAAACAATGTTAGTAAATAGTAAGCACCGAATCC-AAAAA-------TA-T-AAAA-------------TA-GTTGTA--G-TA-----TTAAAC--AACTTAGTT---AANGATAAAC-TTCAAA-TTTGAATGTAG---ACACGTCTT-ATT-ATGTGAAATCATCTTCATTCATCACTCATTAATCATCACAGAAATGCGTAATCATCTTTTATGTTTTT
gi|1 : T-GCACTTCATTTAATATAA-GTAATTACATGCACTAATCATAA---ACCA-------------T---TA--ATATACAGGTTT--ATA--------------TTATATAAGGCTGCAATCAGTAAATACAAAAAGAAAAACAAAT----A-A--TA---TTT-TT-G-T-GATTTAATCTACACATTA----AAACAATC-ATCAGTCTACACATTTAATCTTA-TTATGAGTATAATCAACCTTTGTAAATAGTAAGCACCGAATCC-AAAAA-------AA-T-AAAAAA-----------TA-AAAAAA--A-CAA----TTAGTCG-AACCTAATT---AAAGATAAAC-TTCAAG-TTTGAATGTCG---ACACGTCTT-ATT-ATGTGAAATCATCCTCATTCATCACTCATTAAACATCACAGAAATGCGAAATCATCTTTTATGTTTTT
gi|10 : ATTTAATACAA-GTAGTTACATGCACTAATTATAA---ACAA-------------T---TA--ATATAGGTTTAT--GTT--------------ATATAC--GGCTGCAATTGGTTAATACAAAAAGAAA-------------A--TA---TTT-TT-G-TCATTT-AATCTTCACATAAGGAAA-----TC-TTCAGTCTA-ACATTTAATCTTA-TTATGAGTATAATCAATGTTTGTAAATAGTAAGCACCGAACCC-AAAAA-------TA---AAAA-------------TAAGTT--A--G-T-----------CG-AACTTAATT---AAAGATAAAC-TTCAAG-TTTGAATGTCG---ACACGTCTT-ATT-ATGTGAAATCATCCTCATTCATCACTCATTAATCATCACAGAAATGTGTAATCATCTTTTATGTTTTT
gi|11 : tT-GCACCTAATTTAAC-TAATGTAATTACATGCACTAATTATAAACCA----------------T---TA--A--------------TAGGTTTTTTCTAT--ATATAT--GGCTGCAATTGGTAATTATAAAAA-AAATA---ATAGAAA-A--TAAATTTT-TT-G-ATAATT-AATCTACATATTA----AAATAGTC-GTCGGTCTACAAATTTAATCTTA-TCCAGACTATAAACAATGTTATTAAATGGTAAGCACTGAATC-----AA-------TA-TAAAAA-------------TT-GTTGTT--A-TAT----TTATGC--AGATTAGTT---AAAAATAAACATTCAAA-TTTAAATATAA---ACAC--CTTAATT-GT-TGAAATCATCTTCAT-------TCATTAGTCATCACAGA
gi|12 : T-GCACTTCATTTAATATAA-GTAATTGCATGCACTAATTATAA---ACCATCAATATACAGGTT---TA--T-------------GTT--------------ATATAA--GGCTGCAATCGGTAAATACAAAAAGAAAAA---AA----A-AAATA---TTT-TT-G-TCA-------------TTTA----A-----TC--------TACACATTAAAAC--ACTCGTCAGTTTACACA---TT---------TAAGCAGCAAATCC-AAAAA-------AA-A-AAAA-------------AA-ATT--A--G-T-----------CG-AACCTAATT---AAAGATAAAC-TTCAAG-TTTGAATGTCG---ACACGTCGT-ATT-ATGTGAAATCATCCTCATTCATCACTCATTAATCATCACAGAAATGTGTAATCATCTTTTATGTTTTT
gi|13 : ----------------T---TA--T-------------GTA--------------ATATAT--GGCTGCAATCGGTAAATACAAAAAGAAATG---AT----A-A--TA---TTT-TTTG-TTAACT-AATCTACATATTA----AAACAATT-GTCAGTTTACACATTTAATCTTA-TCATGAGTATAAACAATGTTAGTAAATATTAAGCAACTAATCCAAAAAA-------TA-G-AAAA-------------TA-GTTGTA--T-GA-----TTATGC--AACTTTGTT---AATAATAAAC-TTCAAA-TCTGAATGTCA---ACATGTCTT-AT----------TTATCTTCATTCATCACTCATTAATCATCTCAGAAATGCGTAATCATCTTTTATGTTTTT
gi|14 : ataaacctttaatatacaggtTAA-TCAAATACATGCACTAAT------------------------------A--A-------------GTA--------------ATATAT--GGCTGCAATCGGTAAATATAAAAAGAAATA---AT----A-A--TA---TTC-TTAG-TTGATT-AATCTACACTTTG----G-----TC-GTCAATCAACAAATTTAAAAATA-TCATGAGTATAAACAATGTTAGTAAACAGTAAGCACCGAATCC-AAAAA-------TA-T-AAAA-------------TA-GTTGTA--G-TA-----TTAAAC--AACTCAGTT---AATAATAAAC-TTCAAA-GTTGAAAATAG---ACACGACTT-ATT-ATGTG-AATCATCTCCATTCATCATACATTAATCATCACAGAAATGTGTAATCATCTTTTAAATTTTT
gi|15 : T-GCACTTCATTTAATATAT-GTAATTACATGCACTAATTATAA---ACCATTGATATACAGGTT---TA--T-------------GTT--------------ATATAA--GGCTGCAATCGGTAAATACAAAAAGAAAAA---AA----A-A--T-----------G-TCATTT-AATTTACACATTA----AAACAATC-GTCAGTCTACACATTTAATCTTA-GTATGAATATAATCAACGTTTGTAAATAGTATGCACCGAATCC-AAAAAAAAAC--TA-T-ATAA-------------T---TTTT-----TT-----TTAAGTCGAACCTTATT---AAAGATAAAC-TTCAAG-TTTGAATGTCG---ACACGTCTT-ATA-ATGTGAAATCATCCTCATTTAT
gi|16 : T-GCACCTCATTTAATATAA-GTTATTGCATGCATTAATTATAA---C----------------TCTTTA--ATATATAGGTTTCTGTA--------------ATATAT--GGCTGCAATCGGTAAATACAAAA-GAAAT-----T----A----TA---TTT-TT-G-TTAATT-AATCTACATATTA----AAACAATC-TCCAGTTTACACACTTAATCTTA-TTGTGATTATAAACAATGTTATTAAATAGTAAGCACCGAATCA-AAAAA-------AA-T-GAAA-------------TA-AAAAAA--A-TAAT---TTATGC--AACTTAGTT---AATAATAAAC-TTCAAA-TTTGAATGTAA---ACTCGTCTT-AT
gi|17 : AACAACCATAAGT-GCACCTTATTTAAATTAA-TCAAATACATGCACTAAT------------------------------A--A-------------GTA--------------ATATAT--GGCTGCAATCGGTAAATACAAAAAGAAATA---AT----A-A--TA---TTC-TTAG-TTGA
gi|17 : -AAAAA-------TA-T-AAAA-------------TA-GTTGTA--G-TA-----TTAAAC--AACTCAGTT---AATAATAAAC-TTCAAA-GTTGAATATAG---ACACGACTT-ATT-ATGTG-AATCATCTCCATTCATCATACATTAATCATCACAGAAATGTGTAATCATCTTTTA-ATTTTTaaaatataaaatagttgtagtattaaacaactcagttaataataaacttcaaagttgaatatagacacgacttattatgtgaatcatctccattcatcatacattaatcatcacagaaatgtgtaatcatcttttaattttt
gi|18 : aacaaccataagtgcaccttatttaaattaatcaaatacatgcactaataagtaatatatggctgcaatcggtaaatacaaaaagaaataataatattcttagttgCTACATTTTATAC-A-----TTTATCAATCTATAACTTTAGTCTTA-T----------AATAATGATGATAAATAGTAAGCACGGAATCC-ATAGA------------AAAA-------------TA-GTTGTA--AATA-----T-AAAC--CTCTTGGTTTGCAAAAATG--T-TTTAAG-TT---ACATAAGTTACACGT--T-ATTTAT-TGAAGTAATTTCCATTCATCACCCATCAGTCATCAC
gi|18 : AATCATCTTTTATGTTTTTccaccattcatcacccatcagtcatcacagacattttgaatcatcttttatgttttt
gi|19 : ctacattttatacatttatcaatctataactttagtcttataataatgatgataaatagtaagcacggaatccatagaaaaatagttgtaaatataaacctcttggtttgcaaaaatgttttaagttacataagttacacgttatttattgaagtaatttccattcatcacccatcagtcatcacccaccattcatcacccatcagtcatcacagacattttgAACAAGCA-AAGTTGCACCTCATTTAACATAA-GTAATTACATGCACTGATTATAAACCA----------------T---TA--ATAGGTTTAT----GTA--------------ATATAT--GGCTGCAATCGGTGAATACAAACTGAAATA---AA----A-A--TAAT-TTCTTT-G-T--A-T-AAACTACA
gi|19 : ATAAAC-TACAAA-TTTGAATGCAA---ACTCTTCTT-ATTTAT-TGAAATCATCTTCATTCATCACTCATTATTCATCACATAAATGCGTAATCATCTTATATGTTTTTaatttgaatgcaaactcttcttatttattgaaatcatcttcattcatcactcattattcatcacataaatgcgtaatcatcttatatgttttt
gi|2 : aacaagcaaagttgcacctcatttaacataagtaattacatgcactgattataaaccattaataggtttatgtaatatatggctgcaatcggtgaatacaaactgaaataaaaataatttctttgt-GCACCTCATTTAATATAA-GAAACTACATGCACTAATTATAA---ACCT-------------T---TA--ATATATAGGTTTATGTA--------------ATATAT--GGCTGCAACTGGTGAATACAATAAGAAATA---AT----A-A--TA---GTT-TT-GGTCAATT-AATCTACAC-----------------------------ATTTAATCTTA-TCATGAGTATTAACAATGTTAGTAAATAGTAAGCACCGAATCC-AAAAAAAAAAGTTA-T-AAAAAAACAACAAAAAATA-GTTGTA--T-GA-----TAATGC--AACCTAGTT---GAA-ATAA-C-TTCAAG-TTTGAATGTCG---ACACGCCTT-ATC-ATTTGAAACCATCTTCATTGATCACTCATTAATCATCACAGAAATGCGTAATCATCTTTTATGTTTTT
gi|20 : AACAAGCATAGGT-GCACCTCATTTAACATAA-GTAATTACATGCACTGATTATAAACCA----------------T---TA--ATAGGTTTAT----GTA--------------ATATAT--GGCTGCAATCGGTGAATACAAACTGAAATA---AA----A-A--TAAT-TTCTTT-G-T--A-T-AAACTACA
gi|20 : ATAAAC-TACAAA-TTTGAATGCAA---ACTCTTCTT-ATTTAT-TGAAATCATCTTCATTCATCACTCATTATTCATCACAGAAATGCGTAATCATCTTATATGTTTTTaatttgaatgcaaactcttcttatttattgaaatcatcttcattcatcactcattattcatcacagaaatgcgtaatcatcttatatgttttt
gi|21 : aacaagcataggtgcacctcatttaacataagtaattacatgcactgattataaaccattaataggtttatgtaatatatggctgcaatcggtgaatacaaactgaaataaaaataatttctttgtTAAGCCCCGAATCC-AAAAA-------TA-A-AAAA-------------------GTA--A-AAAAAATTTAGTCG-AACTTAATT---AAAGATAAAC-TTCAAA-TTTGAATGTCG---ACACTTCTT-ATT-ATGTGAAATCATCTTCATTCAACACTCATTAATCATCACAGAAATCTG-AATCATTTCTAATGTTTTT
gi|22 : agccaaccagaggtgaattacctcgtatgacctttaatggaatgttaagcagctttaattcaactACACTTTA----A-----TC-GTCAATCTAAAAATTTAATCGTA-TCATGAGTATAAACAATGTTAGTAATTAGTAAGCACCGAATCC-AAAAA-------TA-G-AAAA-------------TA-GTTGTA--G-TA-----TTATAC--AACTTAGTT---AATAACAAAC-TTCAAG-GTTGTATATAG---ACACGACTT-ATT-ATGTG-AATCATCTTCATTCATCACTCATTAATCACCACAGAAATGTGTAATCATCTTTTATGTTTTT
gi|23 : ACACTTTA----A-----TC-GTCAATCTACAAATTTAAACTTA-TCATGAATATAAACAATGTTAGTAATTAGTAAGCACCGAATCC-AAAAA-------TA-T-AAAA-------------TA-GTTGTA--G-TA-----TTAAAC--AACTCAGTT---AATAACACAC-TTCAAA-GTTGAATATAG---ACACGACTT-ATT-ATGTG-AATCATCTCCATTCATCACTCATTAATCATCACAGAAATGTGTAATCATCTTTTATGTTTTT
gi|24 : ACTTTG----A-----TC-GTCAATCAACAAATTTAAAAATA-TCATGAGTATAAACAATGTTAGTAAACAGTAAGCACCGAATCC-AAAAA-------TA-T-AAAA-------------TA-GTTGTA--G-TA-----TTAAAC--AACTCAGTT---AATAATAAAC-TTCAAA-GTTGAATATAG---ACACGACTT-ATT-ATGTG-AATCATCTCCATTCATCATACATTAATCATCACAGAAATGTGTAATCATCTTTTAAATTTTT
gi|25 : -AAAAA-------TAAT-AAAACA-----------TA-GTTGTATGA-TA-----ATGAA----ATCTAGTA---AAAGATCAAC-TTCATG-TTTGAATGTCG---ACACGTCTT-ATT-ATTTGAAATCATCCTCATTCATCACTCATTAATCATCACAGAAATGCGTAATTATCTTTTATGTTTTT
gi|26 : gaatgacaaattgtttttatTAAATAATAAGCACCGAACCC-AAAAA-------TA---AAAA-------------TAAGTT--A--G-TC----------C--AAATTAATT---AAAGATAAAC-TTCAAG-TTTCAATATCG---ACAAATCTT-ATT-ATGTGAAATTATCCTCATTCATCACTCATTAATTATCACAGAAATGCGTAATCATCTTTTATGTTTTTa
gi|27 : ATAAAC-TACAAAATTTGAATGCAA---AC---TCTT-ATTTAT-TGAAATCATC---ATTCATCACTCATAATTCATCACAGAAATGCGTAATCATCTTTTATGTTTTT
gi|28 : TT-AT-TGAAATCATTTTCATTCGTCATTCATCAATAATTACAGAAATAAGTAATCATTCTTTATGCTTTT
gi|29 : aaacttttaagttatatAACAACCATAAGT-GCACCTTATTTAAATTAA-TCAA
gi|3 : T-GCACTTCATATAATATAA-GTAATTACATGCACTAATTATAA---ACCA-------------T---TA--ATATACAGGTTTACGTT--------------ATATAA--GGCTGCAATTGGTAAATACAAACTGAAAAA---AA----AGA--TT---TTT-TT-G-TCATTT-AATCTACACATTA----AAACAATC-ATCAGTCCACACATTTCATCTTA-TTATGAGTATAATCA-CATTTGTAAATAGTAAGCACAGAATAA-AAAAA-------AA-A-AAAA-------------AA-ATT--A--G-T-------CAAAC-----CTAATT---AAAGATAAAC-TTCAAG-TTTGAATGTTG---ACACGTCTT-ATT-ATGTGAAATCATCCTCATTCATCACTCATTAATCATCACAGAAATGTGTAATCATCTTTTATATTTTTa
gi|30 : CATCACAAAAATGTGTAATCATCTTTTATGTTTTT
gi|4 : T-GCACTTCATTTAATATAA-GTAATTACATGCACTAATTATAA---A----------------C---CATTA-------------GTATACAAGTTTATGTTATATAA--GGCTGCATTCGGTGAATACAAAAAGAAGAA---AA----A-A--AA---T------G-TCATTT-AATCTACACATTA----AAACAATC-GTCAGTCTACACACTTAAGTTTA-TTATGAGTATAATCAACACTTGTAAATAGTAAGCACCGAAT---AAAAA-------AA-A-AAAA-------------GA------A--G-AA-----TTAGTCG-AACCTAATT---AAAGATAAAC-TTCAAA-TTTGAATGTCG---ACACGTCTT-ATT-ATGTGAACTCATCCTCATTCATCACGCATTAATCACCACAGAAATGTGTAATCATCTTTTATGTTTTT
gi|5 : AACAACCATAAGT-GCACCTTATTTAAATTAA-TCAAATACATGCACTAAT------------------------------A--A-------------GTA--------------ATATAT--GGCTGCAATCGGTAAATATAAAAAGAAATA---AT----A-A--TA---TTC-TTAG-TTGATT-AATCTACACTTTG----A-----TC-GTCAATCAACAAATTTAAAAATA-TCATGAGTATAAACAATGTTAGTAAACAGTAAGCACCGAATCC-AAAAA-------TA-T-AAAA-------------TA-GTTGTA--G-TA-----TTAAAC--AACTCAGTT---AATAATAAAC-TTCAAA-GTTGAATATAG---ACACGACTT-ATT-ATGTG-AATCATCTCCATTCATCATACATTAATCATCACAGAAATGTGTAATCATCTTTTAAATTTTT
gi|6 : AACAACCATAAGT-GCACCTTATTTAAATTAA-TCAAATACATGCACTAAT------------------------------A--A-------------GTA--------------ATATAT--GGCTGCAATCGGTAAATATAAAAAGAAATA---AT----A-A--TA---TTC-TTAG-TTGATT-AATCTACACTTTG----A-----TC-GTCAATCAACAAATTTAAAAATA-TCATGAGTATAAACAATGTTAGTAAACAGTAAGCACCGAATCC-AAAAA-------TA-T-AAAA-------------TA-GTTGTA--G-TA-----TTAAAC--AACTCAGTT---AATAATAAAC-TTCAAA-GTTGAATATAG---ACACGACTT-ATT-AGGTG-AATCATCTCCATTCATCATACATTAATCATCACAGAAATGTGTAATCATCTTTTAAATTTTT
gi|7 : AACAACCATATGT-GCACCTTATTTAAATTAA-TCAATTACATGCACTAAT------------------------------A--A-------------GTA--------------ATATAT--GGCTGCAATCGGTAAATACAAAAAGAAATA---AT----A-A--TA---TTC-TTAG-TCGATT-AATCTACACTTTA----G-----TC-GTCAATCTACAAACTTAAAATTA-TCATGAGTATAAACAATGTTAGTAATTAGTAAGCACCGAATCC-AAAAA-------TA-T-AAAA-------------TA-GTTGTA--G-TA-----TTAAAC--AACTCAGTT---AATAACAAAC-TTCAAA-GTTGAATATAG---ACACGACTT-ATT-AAGTG-AATCATCTACATTCATCACACATTAATCATCACAGAAATGTGTAATCATCTTTTATTTTTT
gi|8 : AACAACCATAAGT-GCACCTTATTTAAATTAA-TCAAATACATGCACTAAT------------------------------A--A-------------GTA--------------ATATAT--GGCTGCAATCGGTAAATACAAAAAGAAATA---AT----A-A--TA---TTC-TTAG-TTGATT-AATCTACACTTTG----G-----TC-GTCAACCAACAAATTTAAAAATA-TCATGAGTATAAATAATGTTAGTAATCAGTAAGCACCGAATCC-AAAAA-------TT-T-AAAA-------------TA-GTTGTA--G-TA-----TTAAAC--AACTTAATT---AATGATAAAC-TTCAAA-GTTGAATATAG---ACACGACTT-ATT-ATGTG-AATCATCTCCATTCATCATACATTAATCATCACAGAAATGTGTAATCATCTTTTA-ATTTTT
gi|9 : AACAACCATAAGT-GCACCTTATTTAAATTAA-TCAATTACATGCACTAAT------------------------------A--A-------------GTA--------------GTATAT--GGCTGCAATCGGTAAATACAAAAAGAAATA---AT----A-A--TA---TTC-TTAG-TTGATT-AATCTACACTTTG----G-----TC-GTCAATCTACAAATTTAAAAATA-TCATGAGTATAAACAATGTTAGTAATCAGTAAGCACCGAAT-C-AAAAA-------TA-T-TAAA-------------TA-GTTGTA--G-TA-----TTAAAC--AACTCAGTT---AATAATAAAC-TTCAAA-GTTGAATATAG---ACACGACTT-ATT-TTGTG-AATCATCTCCATTCATCACACATTAATCATCACAGAAATGTGTAATCATCTTTTA-ATTTT