lowQualScore : 111111111111111111111111111111111111
lowQualScore : 111111 111 222222222 3333333333333 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1 1111 22 33333 2222222222 22222222222 1 1 33333333 1 55555555555555555555555 1 1 22 2 11111111111111111 3333 111 111111 111 22 1 11 1 666666666666666666666666666666 11 11 66666666666666666666666666666666 1 11 22222222222222222222 1 11 11 222222222222222222222222222222222222 33333 2 1 11 11 8888888888888888888888888888888
lowQualScore : 5 5 3 111111 5 000 2 3 222222222 0 0 4444444444444 5 5 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 8 7 2 3 4444 77 1 0 0 5 5 00 88888 6 6 6666666666 7 00000000000 3 1 88 2 5 77777777 888888 55 1 3 0 3 33333333333333333333333 3 5 7 55 4 55 4 55 4 2 55 9 1 55 7 0 88888888888888888 3 8888 4444 111 777777 4 8 33 000 4 1 55 00 1 1 7 77 5 00 88 5 5 1 1 2 22 5 99 333333333333333333333333333333 0 0 1 55 5 88 0 0 22 6 777 1 99 6 99 99 11111111111111111111111111111111 3 0 4 555 2 5 00 7 55 55 22222222222222222222 4 4 1 44 11 77 4 66 4 000000000000000000000000000000000000 3 44444 6 0 5 2 3 0 7 99 5 44 7777777777777777777777777777777 66
lowQualScore : . . . ...... . ... . . ......... . . ............. . . .............................................................................................. . . . . .... .. . . . . . .. ..... . . .......... . ........... . . .. . . ........ ...... .. . . . . ....................... . . . .. . .. . .. . . .. . . .. . . ................. . .... .... ... ...... . . .. ... . . .. .. . . . .. . .. .. . . . . . .. . .. .............................. . . . .. . .. . . .. . ... . .. . .. .. ................................ . . . ... . . .. . .. .. .................... . . . .. .. .. . .. . .................................... . ..... . . . . . . . .. . .. ............................... ..
lowQualScore : 7 7 7 444444 0 111 2 2 555555555 4 4 6666666666666 7 7 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 2 2 3 2222 99 6 3 6 7 7 11 55555 7 5 9999999999 3 22222222222 2 9 88 5 4 88888888 555555 00 2 6 2 6 55555555555555555555555 5 9 4 55 0 55 6 55 4 3 55 8 7 55 1 0 44444444444444444 7 5555 0000 555 444444 0 0 33 555 1 2 77 33 4 4 9 33 7 99 88 4 0 9 3 6 33 7 22 555555555555555555555555555555 3 7 1 77 7 33 9 8 66 0 888 5 22 7 22 22 00000000000000000000000000000000 3 5 3 666 5 3 66 3 00 00 33333333333333333333 3 7 4 77 66 00 1 99 1 333333333333333333333333333333333333 9 66666 7 4 5 0 3 7 7 11 7 33 3333333333333333333333333333333 88
consensus : GATA-G-ATTGGCC----TACC-A--ATGGCGTGATTTGCAATACATGTGTTATAGA---AANAAATGAAGGGAAACATAAAAA-ACGNA----A--G-TA-TGGCCAGTGTGTGTGTGTGTGTTTGTGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTAGGAAACAATAATTACACAACT-ACTAGTCTCGTACTAAGCTACATATCGTAG----GATCA--CTTGTAGATTTCGGTTAT-A-ATTTCAAATATTAAAAAGGTATTGATAAT-ATAAT-AGACAGCACGTCGAGGCAATTCTTCAAAT----------GAGTGA-----C-----TGAAGTGAACAAAACATAAACTTGTAGATTTCGGTCCTAATTTCAAAAACTAAAAATGTATTGATAATAACAGACAGCACGTCGA---G--ACAAT--NT--CA--AATGA-TGAAGC-A--C--G--------A--------AGTGAACAAAACAGAAACTTGTTATAAAAGCATATTTGGAGAATCCGGG--TATCGAT-CCCGGTACC--TCTCACATGCTA--AGCGAGCGCTCTACC--ACTTGAGCTAATTCCCC-ATCCCGTCGTAGTAAAA-C---AT---TAANAC-TACGATGATGAT----ATC-AGTTCAGCAATCGAAT--ATTAAGN-----TNTTT-CTGTTTCCATCTCAGGAAAACNAGAATCGATTAAAATAATAGAAAATGTCA-ATTT-TGCAATAAAACNGGCATACTCTCTTTTGACAGATCTTGAATNAAAAGTTAT-TGGCCA--GTATGG-----------C-------------T----ATTCGCGTTATTAGCACGACGCTCTAAGCGACTGA--GCT-ACGCGGCCATTTCGTTCTA-NGCTT--TATTTCGTACGAT--C-A--CTT--GT-----------ACA--TT---G----------AAATATTAAAAATGTATTGATAATAATAGACAGCACGTCG-AGGCAA-AT-TT--CA--AAT-GATGAAGCACGAGTGATTGAAGTGAACAAAACAGAAACTTGTTATAAAAGCATANTTGGAGAATCCGGGTATCGAT-CCCGGTACC--TCTCACATGCT-AGCGAGCGC-----------T-----------CTACCACTTGAGCTAATTCCCT-N-TCCCGTTAGTAGTATGTTTCAAATATTAAAAAGNTATTAATAATAA-TAGACAGCACGTTGAGGCAAG-----TCTCACAAGATAAAGCACGAGTGACTGAAGTGAAT
Reference ( gi|1 ) : GATA-G-ACTGGTT----TACC-A--ATGGCGTGATTTGCAATACATGTGTTATAGA---AAAAATTGAAGGGAAACATAAAAA-ATATG----A--G-TA-TGGCCAGTGTGTGTGTGTGTGTTTGTGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTAGGAAACAATAATTACATAACT-ACTAGTCTCGTACTAAGCTTCACATCGTAG----GATCA--CTTGTAGATTTCGGTTAT-A-ATTGTAAATATTAAAAAGGTATTGATAATTATAAT-AGACAGCACGTTGAGACAATTCTTCAAAT----------GAGTGA-----C-----TGAAGTGAACAAAACATAAACTTGTAGATTTCGGTCCTAATTTCCAAAACTAAAAATGTATTGATGATAACAGCCATCATGTCAA---A--A-AAT--GT--CA--AATTA-TGAAAC-A--C--A--------A--------AGTAAACAAACCAGAAACTTGTTATAAAAGCATATTTGGAGAATCCGTG--TATCGAT-CCCGGTACC--TCTCATATGCTA--AGTGATCGCTCTACC--ACTTTAGCTAAATCCCTGATCCCATTGTA-TAAAA-C---AT---TAAGAC-TACGATAGTGAT----AT----TTCAGCAATCGAAT--ATTAAGA-----TATTT-CTGTTTCCATTTCAGGAAACCCAGAATCGGTTAAAATAACAGCAACTGTCA-ATTT-TGCAATAAAACAAGTATACT-TCTTTTAATAGATCTTGAATAAAAAGTTAT-TAGCCA--GTATGG-----------C-------------T----ATTTGCGTTATTAGCACGACGCTCTAAGCGACTAA--GCT-ACGCGGCCATTTCGTTCTA-TGATT--TATTTCGTATGAT--C-A--CTT--GT-----------ACA--TT---G----------AAATGTTATAAATGTATTGATAATAATAAACAGCATGTTG-AAGTAA-AT-TT--CA--AAT-AATAAAGCACGAATGATTAAAGTGAACATAACAGAAACCTGTTGTAAAAATATAGCTGGAGAATCCGGGTATCGAT-ACTGGTACC--TTTCACAT-----------GC-----------T-----------CTATCACTTGAGCTAATTCCTT-T-TCCCATTAGTAGTATGTTCCAGATATTAAGAAGTTATTAATAAATA-TAGACAGTCCG--GAG---AG-----TCTCACAAGATGAAGCACGAGTGATTGAGATGAAT
gi|2 : GATA-G-ACTGGTT----TACC-A--ATGGCGTGATTTGCAATACATGTGTTATAGA---AAAAATTGAAGGGAAACATAAAAA-ATATG----A--G-TA-TGGCCAGTGTGTGTGTGTGTGTTTGTGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTAGGAAACAATAATTACATAACT-ACTAGTCTCGTACTAAGCTTCACATCGTAG----GATCA--CTTGTAGATTTCGGTTAT-A-ATTGTAAATATTAAAAAGGTATTGATAATTATAAT-AGACAGCACGTTGAGACAATTCTTCAAAT----------GAGTGA-----C-----TGAAGTGAACAAAACATAAACTTGTAGATTTCGGTCCTAATTTCCAAAACTAAAAATGTATTGATGATAACAGCCATCATGTCAA---A--A-AAT--GT--CA--AATTA-TGAAAC-A--C--A--------A--------AGTAAACAAACCAGAAACTTGTTATAAAAGCATATTTGGAGAATCCGTG--TATCGAT-CCCGGTACC--TCTCATATGCTA--AGTGATCGCTCTACC--ACTTTAGCTAAATCCCTGATCCCATTGTA-TAAAA-C---AT---TAAGAC-TACGATAGTGAT----AT----TTCAGCAATCGAAT--ATTAAGA-----TATTT-CTGTTTCCATTTCAGGAAACCCAGAATCGGTTAAAATAACAGCAACTGTCA-ATTT-TGCAATAAAACAAGTATACT-TCTTTTAATAGATCTTGAATAAAAAGTTAT-TAGCCA--GTATGG-----------C-------------T----ATTTGCGTTATTAGCACGACGCTCTAAGCGACTAA--GCT-ACGCGGCCATTTCGTTCTA-TGATT--TATTTCGTATGAT--C-A--CTT--GT-----------ACA--TT---G----------AAATGTTATAAATGTATTGATAATAATAAACAGCATGTTG-AAGTAA-AT-TT--CA--AAT-AATAAAGCACGAATGATTAAAGTGAACATAACAGAAACCTGTTGTAAAAATATAGCTGGAGAATCCGGGTATCGAT-ACTGGTACC--TTTCACAT-----------GC-----------T-----------CTATCACTTGAGCTAATTCCTT-T-TCCCATTAGTAGTATGTTCCAGATATTAAGAAGTTATTAATAAATA-TAGACAGTCCG--GAG---AG-----TCTCACAAGATGAAGCACGAGTGATTGAGATGAAT
gi|3 : GATA-ATATTGGTT----GACCTACTATGGCGTGATTTGCAATACATGTGTTATAAA---TACAAATGAAGTGAAACAT-AAAA-ATGTA----AC-GTTA-TGGCCAGTGTG
gi|8 : GATAAG-ATTGGTTGGCCTACC-A---TGGCGTG-TTTGCAATGCATGTGTTATAAATTCAAA---TGAAGGGAAAC-TTAAAA-ATGTA----AAGG-TA-TGGCCAGTGTGggggtcgtacccacgacatttgcattattagcacaacgcactaaccgactgagttaaccgaccatgtggcaaagtatgatattacaacattaggaaacaataattacacaactactagtctcgtactacgctacgtatcgtagaatcactagtggatttcggttattagttaaaatattaaaaaggtattaataataatagacagcacgttgagacaattcttcaaatgagtgactgaagtgaacaaaacataaacttgtagatttcggtcttaatttcagaaataaaaaatgtattgatgataacagacatcatggcaagacaatgtgacaaatgaagaaacatttgaagtgaacagaccagaaacttgttataaaagcctttttggagaatccgggtattgatcccggtacctctcacatgcttagggagcgctctaccacttgagctaattcccccgttctacgatgatgatttttcagcaatcaaatattaaggcatttctgtttttatctcaggaaatccaggatcgattaaaataacaccaactgtcaattttgcaataaaacaattatacttcttttaatagatcttgaataaaaagttattagccagtatggctatttgcgttattagcacgacgctctaagcgactaacggctatgcggccatttagttctatgctttatttcgtatgatcacttgtacat
gi|14 : aGATA-G-ATTGGCC----TACC-A--ATGACATAATTTGCAATACATGTGTTATAGA---AACAAATGAAGGGAAACATAAAAATGCAAA----A--G-TACTGGCCAGTGTGgacggtggaaccctcgacattcgtgttattagtacaacgctctaacagactgtgctaaccgaccatgtggcaaagtatgatattacaacattaggaaacagtaattacacaactactagtctcgtactacgctacatatcgtaggatcacttgtagatttcggttataatttcaaatattaaaaagatattaataataatagacagcacgtggagacaattcttcaagtgagtgactgaagtgaacaaaacataaacttgtagatttcggtcctaattgaaacaaaaataccttaataa
gi|15 : GATA-G-ATTGGCC----TACC-A--ATGACATAATTTGTAATACATGTGTTATAGA---AACAAATGAAGGGAAACATAAAAAGGCAAA----G--G-TA-TTGCCAGTAT
gi|17 : aATA-G-ATTGGCC----TACC-A--ATGAC-TGATTTGCAATACATGTGCTATAGA---AAAAAATGAAAAGAAACATAAAAA-AT-TGTAAAA--G-TA-TGGCCAGTGTG
gi|16 : ATA-G-ATTGGCC----TACC-A--ATGACATAATTTGTAATACATGTGTTATAGA---AACATATGAAAACAAACATAAAAAGACAAA----G--G-TA-TTGCCAGTAT
gi|4 : aaTGGCC----TACC-A---TGGCGTG-TTTGCAATGCATGTGTTATAAATTCAAA---TGAAGGGAAACTTAAAAA-
gi|3 : gattgggCATTAGGAAACAATAATTACACAACT-ACTAGTCTCGTACTACGCTACGTATCGTAG----AATCA--CTAGTGGATTTCGGTTATTA-GTTA-AAATATTAAAAAGGTATTAATAAT---AAT-AGACAGCACGTTGAGACAATTCTTCAAAT----------GAGTGA-----C-----TGAAGTGAACAAAACATAAACTTGTAGATTTCGGTCTTAATTTCAGAAATAAAAAATGTATTGATGATAACAGACATCATGGCAA---G--ACAAT--GTGACA--AATGA-AGAAAC-ATTT--G--------A--------AGTGAACAGACCAGAAACTTGTTATAAAAGCCTTTTTGGAGAATCCGGG--TATTGAT-CCCGGTACC--TCTCACATGCTT--AGGGAGCGCTCTACC--ACTTGAGCTAATTCC-----CCCGTT------------------------C-TACGATGATGAT----TT----TTCAGCAATCAAAT--ATTAAGG-----CATTT-CTGTTTTTATCTCAGGAAATCCAGGATCGATTAAAATAACACCAACTGTCA-ATTT-TGCAATAAAACAATTATACT-TCTTTTAATAGATCTTGAATAAAAAGTTAT-TAGCCA--GTATGG-----------C-------------T----ATTTGCGTTATTAGCACGACGCTCTAAGCGACTAACGGCT-ATGCGGCCATTTAGTTCTA-TGCTT--TATTTCGTATGAT--C-A--CTT--GT-----------ACA--Ttgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcacgtggcaaagtatgatattacaacattaggaaacaataattacacaactactagtctcgtactaagctacatatcgtagaatcacttgttgatttcggttataatttcaaatattaaaaagatattaataatagtagacagcacgtggagacaattcttcaagtgagtgactgaagtgaacaaaacataaacttgtagatttcggttctaatttcaaaaaataaaaatgtattgatgacaacagacatcatgtcaaaacaatgtcaaatgatgaaacatgaagaaaacaaaccagaaacttgttataaaagcatacttggagaatccgggtatcgatcccggtacctctcacatgctaagcgagcgctctaccacttgagctaattcccccatccctttgcataaaacataaagactacaatgctgatatttcagcaattgattattaaggtatttttgtttcaattaggaccgaaatc
gi|4 : gataatattggttgacctactatggcgtgatttgcaatacatgtgttataaatacaaatgaagtgaaacataaaaatgtaacgttatggccagtgtgggggtcgtacccacgacatttgcattattagcacaacgcactaaccgactgagttaaccgaccatgtggcaaagtatgatattacaaCATTAGGAAACAATAATTACACAACT-ACTAGTCTCGTACTAAGCTACATATCGTAG----AATCA--CTTGTTGATTTCGGTTAT-A-ATTTCAAATATTAAAAAGATATTAATAAT---AGT-AGACAGCACGTGGAGACAATTCTTCAAGT----------GAGTGA-----C-----TGAAGTGAACAAAACATAAACTTGTAGATTTCGGTTCTAATTTCAAAAAATAAAAATGTATTGATGACAACAGACATCATGTCAA---A--ACAAT--GT--CA--AATGA-TGAAAC-A--T--G--------A--------AGAAAACAAACCAGAAACTTGTTATAAAAGCATACTTGGAGAATCCGGG--TATCGAT-CCCGGTACC--TCTCACATGCTA--AGCGAGCGCTCTACC--ACTTGAGCTAATTCCCCCATCCCTTTGCA-TAAAA-C---AT---AAAGAC-TACAATGCTGAT----AT----TTCAGCAATTGATT--ATTAAGG-----TATTT-TTGTTTCAATT--AGGA---CCGAAATC
gi|8 : gattgggtggcctaccatggcgtgtttgcaatgcatgtgttataaattcaaatgaagggaaacttaaaaatgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcacgtggcaaagtatgatattacaaCATTAGGAAACAGTAATTACACAACT-ACTAGTCTCGTACTACGCTACATATCGTAG----GATCA--CTTGTAGATTTCGGTTAT-A-ATTTCAAATATTAAAAAGATATTAATA---ATAAT-AGACAGCACGTGGAGACAATTCTTCAAGT----------GAGTGA-----C-----TGAAGTGAACAAAACATAAACTTGTAGATTTCGGTCCTAATT---GAAAC-AAAAATACCTTAATAA
gi|9 : agataagattggttggcctaccatggcgtgtttgcaatgcatgtgttataaattcaaatgaagggaaacttaaaaatgtaaaggtatggccagtgtggacggtggaaccctcgacattcgtgttattagtacaacgctctaacagactgtgctaaccgaccatgtggcaaagtatgatattacaaATCATGACATAACCGACTGAGCT--TACCG-GCT--ATTTCGTAGTAGTGATCATTCTGGTCCATTTTAGTCTT-A-ATTTCAAATATTAAAAAGTTATTAATA---ATAAT-AGACAGCACATTAATGCAATTTCTCAATT----------GA---------------TAAAGTAAACAAAACATACTCTTGT
gi|12 : attttggtaaattttggatatcgattcccggttcctctcacatgctaagcgagtgctctaccacttgagctaattccccattcccttgtagtaaaacataattaatacgatgatgatTTTCGTTCTAAGCTTTATTTCGTAC----GATAA--C----AG---TC--TTGT-ACATTG-AAATATTATGAATGTATTGATAAT---AAT-AGACAGCATGTTGAGGCAAAT-TTCAAATAATAAAGCACGAGTGA-----T-----TCAAGTGAACAAAACAGAAACATGTtataaaaggatactttgagaatccgggtaccgatccctgtacccgtctcacatattattacgacgccctaacagactgagctaaccggacattttgtagtaatttgtatttcat
gi|6 : caaggtatatttcttttaatagatcttgaataaaacgttattagccagtatggctatttgcgttattagcacgacgctctaagcgacttacggctatgcggccaA--CTTGTAGATTTCGGTCTT-A-ATTTCAAAAAATAAAAATGTATTGATG---ATAAC-AGACATCATGTCAAGACAATGTCACAAAT----------GA-TGAAACATT-----TGAAGTGAACAGACTAGAAACTTGT
gi|11 : aatgagacagcacgttgaaacaattcttcaaatgagtgactgtagtgaacaaaacataaGTATTGATAAT---AAT-AGACAGCATGTTGAGGCAAAT-TTCAAATAATAAAGCACGAGTGA-----T-----TCAAGTGAACAAAACAGAAACATGTtataaaagcctttttggagaatccgggtattgatcccggtacatctcaaatgctaagcgagcgctctaccacttgagttaagtccctcatccctatgtattaactcattaagactacgatagtgatatttcagcaatcgaatatttagatattctgtttccatttcaggaaacctagaatcggtaaaaataatagaaaatgtcaattttgcaataaaacagatatacttcttttaatagatcttgaataaaaagttattggccagtatggctatttacgttattagcacgacgcagtaagtgactaagcaatgcggccatttcgttctaagctttat
gi|10 : atTAAC-TGACAGCACGTCAACTTAATATCTCAAAT----------GA---------------TGAAGCAAACAAAACATAAAATTGTgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttccccattccgtcgtagtaaaatataattaatatgatgatgatgatatcaagttcagcaatcgagttttaagtttttttctgtttccatctcagaaaaacaagaatc
gi|6 : AATGAGACAGCACGTTGAAACAATTCTTCAAAT----------GAGTGA-----C-----TGTAGTGAACAAAACATAAACTTGTAGATTTCGGTCTTAATTTCAAAAAATAAAAATGTATTGATGATAACAGACATCATGTCAA---G--ACAAT--GT--CACAAATGA-TGAAAC-A--TTTG--------A--------AGTGAACAGACTAGAAACTTGTTATAAAAGCCTTTTTGGAGAATCCGGG--TATTGAT-CCCGGTACA--TCTCAAATGCTA--AGCGAGCGCTCTACC--ACTTGAGTTAAGTCCCTCATCCCTATGTA-TTAACTC---AT---TAAGAC-TACGATAGTGAT----AT----TTCAGCAATCGAAT--ATTTAGA-----TATT--CTGTTTCCATTTCAGGAAACCTAGAATCGGTAAAAATAATAGAAAATGTCA-ATTT-TGCAATAAAACAGATATACT-TCTTTTAATAGATCTTGAATAAAAAGTTAT-TGGCCA--GTATGG-----------C-------------T----ATTTACGTTATTAGCACGACGCAGTAAGTGACTAA--GCA-ATGCGGCCATTTCGTTCTA-AGCTT--TATcataaaagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacgacaataatatcaagttcagcaatcaaatttaattttttttctgtttccatctgagaaaaataagaaattattaaaaatagaaaatgtcactttctgaatgcaaatggcatattctctttcgtcaaattgtgaattaaaatatatggcaag
gi|5 : AATGAGACAGCACGTTGAAACAATTCTTCAAAT----------GAGTGA-----C-----TGTAGTGAACAAAACATAAACTTG
gi|18 : taactgacagcacgtcaatgtaatatctcacatgatgaagcaaacaaaacataaacttgtcataaaagcaaatttggagaatccgggtatcgatcccggtacctctcacatgctaagcgagcgttctaccacttgagctaattccccatttcgtcgtagtaaaacataaacaatacgataatgataacaagttcagcaatcaaattgattttttttctgtttccatctcagataaacaagaaactattaaaaatagagaatgtcattttttgaataaaacttgcatattctcttttgtcagattgtgaattaaaatatattgcaattgtagatgtcgaacacaagatatttgcgtagccgaacatattctagaaatttgtatttcatcaaatagtgatacaataatgatgattgagataagattgattggactaccatgttcaggtatggccAAC-AGACAGCACGTCAATGTAGTATCTCAAAT----------GA---------------TGAAGCAAACAAAACATAAACTTG
gi|7 : TTAAGGCAATT-TTCAACT----------AATTAAGCA--CGATAATTAAGTGAACAAAACAGAAACCTGT
gi|8 : taACTTGTAGATTTCGGTTATAATTTCAAATATTAAAAAGATATTAATAATAATAGACAGCACGTGGA---G--ACAATTCTT--CA--AGTGAGTG--AC----T--G--------A--------AGTGAACAAAACATAAACTTGTtgtataaatacagttggagaatcctggtatcgatctcggtacttctcacatgctaatcgagcgctctaccacttgagctaattccctattcagttgtagtaaaatataattaatacgctgatgacatcgagttcagcaatcgaattttaaggcttttctgtttccatctattaaaaaatagaaatgccacatttttaataaaactcggataatcccttttgccagattgtgaattaaaatatatggcaattgtagacatcgaaaacaagatattcgcgttattgataagacaccctaaccgactgagctagccggacatattctagtaatttgtatttca
gi|4 : agataagattggttggcctaccatggcgtgtttgcaatgcatgtgttataaattcaaatgaagggaaacttaaaaatgtaaaggtatggccagtgtggacggtggaaccctcgacattcgtgttattagtacaacgctctaacagactgtgctaaccgaccatgtggcaaagtatgatattacaacattaggaaacagtaattacacaactactagtctcgtactacgctacatatcgtaggatcGATTTCGGTCCTAATT---GAAAC-AAAAATACCTTAATAATagatttcggtcctaattgaaacaaaaataccttaataa
gi|9 : gattgggtggcctaccatggcgtgtttgcaatgcatgtgttataaattcaaatgaagggaaacttaaaaatgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcacgtggcaaagtatgatattacaacattaggaaacaataattacacaactactagtctcgtactaagctacatatcgtagaatcacttgttgatttcggttataatttcaaatattaaaaagatattaataatagtagacagcacgtggagacaattcttcaagtgagtgactgaagtgaacaaaacataaacttgtagatttcggttctaatttcaaaaaataaaaatgtattgatgacaacagacatcatgtcaaaacaatgtcaaatgatgaaacatgaagaaaacaaaccagaaacttgttataaaagcatacttggagaatccgggtatcgatcccggtacctctcacatgctaagcgagcgctctaccacttgagctaattcccccatccctttgcataaaacataaagactacaatgctgatatttcagcaattgATTTTAGTCTTAATTTCAAATATTAAAAAGTTATTAATAATAATAGACAGCACATTAA----------T--G---CA--ATTTC-TCAATTGA--T--A--------A--------AGTAAACAAAACATACTCTTGTTATAAAAGGATACTTTGAGAATCCGGG--TACCGAT-CCCTGTACCCGTCTCACATATTATTA-CGA-CGCCCTAACAGAC-TGAGCTAA
gi|12 : attttggtaaattttggatatcgattcccggttcctctcacatgctaagcgagtgctctaccacttgagctaattccccattcccttgtagtaaaacataattaatacgatgatgatatcatgacataaccgactgagcttaccggctatttcgtagtagtgatcattctggtccAATGTATTGATAATAATAGACAGCATGTTGA---GGCA-AAT--TT--CA--AATAA-TAAAGC-A--C--GAGTGATTCA--------AGTGAACAAAACAGAAACATGTccggacattttgtagtaatttgtatttcat
gi|11 : caaggtatatttcttttaatagatcttgaataaaacgttattagccagtatggctatttgcgttattagcacgacgctctaagcgacttacggctatgcggccatttcgttctaagctttatttcgtacgataacagtcttgtacattgaaatattatgATGTATTGATAATAATAGACAGCATGTTGA---GGCA-AAT--TT--CA--AATAA-TAAAGC-A--C--G--------AGTGATTCAAGTGAACAAAACAGAAACATGT-GTNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNN-NNNNNNNNN--NNNNNNNNNNNN--NNNNNNNNNNNNNNN--NNNNNNNNNNNTTCCCC-ATTCCGTCGTAGTAAAA-T---ATAATTAATAT-GATGATGATGAT----ATCAAGTTCAGCAATCGAGT--TTTAAGT-----TTTTTTCTGTTTCCATCTCAGAAAAACAAGAATC
gi|5 : TAACTGACAGCACGTCAATGTA--A-TAT--CT--CA--CATGA-TGAAGC-A---------------------------AACAAAACATAAACTTGTCATAAAAGCAAATTTGGAGAATCCGGG--TATCGAT-CCCGGTACC--TCTCACATGCTA--AGCGAGCGTTCTACC--ACTTGAGCTAATTCCCC-ATTTCGTCGTAGTAAAA-C---AT---AAACAA-TACGATAATGATAACAAG----TTCAGCAATCAAATTGATT---T-----TTTTT-CTGTTTCCATCTCAGATAAACAAGAAACTATTAAA--AATAGAGAATGTCA-TTTT-TTGAATAAAACTTGCATATTCTCTTTTGTCAGATTGTGAATTAAAATATAT-T
gi|10 : TAACTGACAGCACGTCAACTTA--A-TAT--CT--CA--AATGA-TGAAGC-A---------------------------AACAAAACATAAAATTGTCATAAAAGCNNNNNNNNNNNNNNNNNN--NNNNNNN-NNNNNNNNN--NNNNNNNNNNNN--NNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNN-N---NN---NNNNNN-NACGACAATAAT----ATCAAGTTCAGCAATCAAAT---TTAATT-----TTTTTTCTGTTTCCATCTGAGAAAAATAAGAAATTATTAAA--AATAGAAAATGTCA-CTTTCTG-AATGCAAATGGCATATTCTCTTTCGTCAAATTGTGAATTAAAAgcaattgtagatgtcgaacacaagatatttgcgtagccgaacatattctagaaatttgtatttcatcaaatagtgatacaataatgatgattgagataagattgattggactaccatgttcaggtatggccaatgagacagcacgttgaaacaattcttcaaatgagtgactgtagtgaacaaaacataaacttg
gi|7 : T--CA--ACTAA-TTAAGC-A--C--G--------ATAATTA--AGTGAACAAAACAGAAACCTGTTGTATAAATACAGTTGGAGAATCCTGG--TATCGAT-CTCGGTACT--TCTCACATGCTA--ATCGAGCGCTCTACC--ACTTGAGCTAATTCCCT-ATTCAGTTGTAGTAAAA-TATAAT---TAA----TACGCTGATGAC----ATCGAGTTCAGCAATCGAAT--TTTAAGG-----CTTTT-CTGTTTCCATCT-----------------ATTAAAA-AATAG-AAATGCCACATTT-T-TAATAAAACTCGGATAATCCCTTTTGCCAGATTGTGAATTAAAA--TATATGGCAATTGTA-GA-----------CATCGAAAACAAGAT----ATTCGCGTTATTGATAAGACACCCTAACCGACTGA--GCT-AGCCGGACAT---ATTCTAGTAATTTGTATTTCtatatggcaag
gi|9 : tattaaggcaatttTTTGGTAAATTT-TGGATATCGATTCCCGGTTCC--TCTCACATGCTA--AGCGAGTGCTCTACC--ACTTGAGCTAATTCCCC-ATTCCCTTGTAGTAAAA-CATAAT---TAA----TACGATGATGAT----AT----a
gi|13 : atGCTAATTCCCC-ATTGCGTCGTAGTAAAA-C---AT----AACACATACGACAATAAT----ATCAAGTTCAGCAATCAAAT---TTAAGTGTTTTTTTTT-CTGTTTCCATCTCAGATAAACAAGATACTATTAAA--AATAGAAAATGTCA-CTTT-TTGAATAAAACTGGCATA-T-TCTTTTcatgacataaccgactgagcttaccggctatttcgtagtagtgatcattctggtccattttagtcttaatttcaaatattaaaaagttattaataataatagacagcacattaatgcaatttctcaattgataaagtaaacaaaacatactcttgttataaaaggatactttgagaatccgggtaccgatccctgtacccgtctcacatattattacgacgccctaacagactgagctaaccggacattttgtagtaatttgtatttcat
gi|8 : T--ATTAAGG-----TATTT-TTGTTTCAATT--AGGA---CCGAAATC
gi|12 : agataagattggttggcctaccatggcgtgtttgcaatgcatgtgttataaattcaaatgaagggaaacttaaaaatgtaaaggtatggccagtgtggacggtggaaccctcgacattcgtgttattagtacaacgctctaacagactgtgctaaccgaccatgtggcaaagtatgatattacaacattaggaaacagtaattacacaactactagtctcgtactacgctacatatcgtaggatcacttgtagatttcggttataatttcaaatattaaaaagatattaataataatagacagcacgtggagacaattcttcaagtgagtgactgaagtgaacaaaacataaacttgtaAGGTATATT-TCTTTTAATAGATCTTGAATAAAACGTTAT-TAGCCA--GTATGG-----------C-------------T----ATTTGCGTTATTAGCACGACGCTCTAAGCGACTTACGGCT-ATGCGGCCATTTCGTTCTA-AGCTT--TATTTCGTACGATAAC-AGTCTT--GT-----------ACA--TT---G----------AAATATTATGAATGTATTGATAATAATAGACAGCATGTTG-AGGCAA-AT-TT--CA--AAT-AATAAAGCACGAGTGATTCAAGTGAACAAAACAGAAACATGTa
gi|8 : caAATGTAAAGGTAT--GGCCA--GTGTGGACGGTGGAACCC-------------TCGACATTCGTGTTATTAGTACAACGCTCTAACAGACTGT--GCT-AACCGACCAT
gi|9 : agataagattggttggcctaccatggcgtgtttgcaatgcatgtgttataaattcaaatgaagggaaacttaaaTATCATGACA---TAACCGACTGA--GCTTAC-CGGCTATTTCGTAGTAGTGATC---ATTC----TGGT--CCA--TTTTAGTCTT--------AAT--TT---C----------AAATATTAAAAAGTTATTAATAATAATAGACAGCACATTA-ATGCAA--T-TT--C-----TCAAT----------TGAT-AAAGTAAACAAAACATACTCTTGTTATAAAAGGATACTTTGAGAATCCGGGTACCGAT-CCCTGTACCCGTCTCACAT-----------gtggcaaagtatgatattacaacattaggaaacagtaattacacaactactagtctcgtactacgctacatatcgtaggatcacttgtagatttcggttataatttcaaatattaaaaagatattaataataatagacagcacgtggagacaattcttcaagtgagtgactgaagtgaacaaaacataaacttgtagatttcggtcctaattgaaacaaaaataccttaataa
gi|4 : attttggtaaattttggatatcgattcccggttcctctcacatgctaagcgagtgctctaccacttgagctaattccccattcccttgtagtaaaacataattaatacgatgatgaTCTCGTACTA-AGCTA--CATATCGTAGAAT--C-A--CTT--GTTGATTTCGGTTATAATTT---C----------AAATATTAAAAAGATATTAATAATAGTAGACAGCACGTGG-AGACAA-TTCTT--CA--AGT-----------GAGTGACTGAAGTGAACAAAACATAAACTTGTattattacgacgccctaacagactgagctaaccggacattttgtagtaatttgtatttcat
gi|8 : gattgggtggcctaccatggcgtgtttgcaatgcatgtgttataaattcaaatgaagggaaacttaaaaatgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcacgtggcaaagtatgatattacaacattaggaaacaataattacacaactactagTCTCGTACTA-CGCTA--CATATCGTAGGAT--C-A--CTT--GT-----------AGA--TTTCGGTTATAATTTCAAATATTAAAAAGATATTAATAATAATAGACAGCACGTGG-AGACAA-TTCTT--CA--AGT-----------GAGTGACTGAAGTGAACAAAACATAAACTTGTagatttcggttctaatttcaaaaaataaaaatgtattgatgacaacagacatcatgtcaaaacaatgtcaaatgatgaaacatgaagaaaacaaaccagaaacttgttataaaagcatacttggagaatccgggtatcgatcccggtacctctcacatgctaagcgagcgctctaccacttgagctaattcccccatccctttgcataaaacataaagactacaatgctgatatttcagcaattgattattaaggtatttttgtttcaattaggaccgaaatc
gi|3 : agataagattggttggcctaccatggcgtgtttgcaatgcatgtgttataaattcaaatgaagggaaacttaaaaatgtaaaggtatggccagtgtggacggtggaaccctcgacattcgtgttattagtacaacgctctaacagactgtgctaaccgaccatgtggcaaagtatgatattacaacattaggaaacagtaattacacaactactag---G----------AAATA--AAAAATGTATTGATGATAACAGACATCATG--GCAAGACA-AT-GTGACA--AAT-GAAGAAACAT------TTGAAGTGAACAGACCAGAAACTTGTTATAAAAGCCTTTTTGGAGAATCCGGGTATTGAT-CCCGGTACC--TCTCACATGCTTAGGGAGCGC-----------T-----------CTACCACTTGAGCTAATTCC------CCCGTTagatttcggtcctaattgaaacaaaaataccttaataa
gi|6 : gataatattggttgacctactatggcgtgatttgcaatacatgtgttataaatacaaatgaagtgaaacataaaaatgtaacgttatggccagtgtgggggtcgtacccacgacatttgcattattagcacaacgcactaaccgactgagttaaccgaccatgtggcaaagtatgatattacaacattaggaaacaataattacacaactactagtctcgtactacgctacgtatcgtagaatcactagtggatttcggttattagttaaaatattaaaaaggtattaataataatagacagcacgttgagacaattcttcaaatgagtgactgaagtgaacaaaacataaacttgtagatttcggtcttaatttcaTAAAAATGTATTGATGATAACAGACATCATGTC--AAGACA-AT-GT--CACAAAT-GATGAAACAT------TTGAAGTGAACAGACTAGAAACTTGTTATAAAAGCCTTTTTGGAGAATCCGGGTATTGAT-CCCGGTACA--TCTCAAATGCTAAGCGAGCGC-----------T-----------CTACCACTTGAGTTAAGTCCCT-CATCCCctacgatgatgatttttcagcaatcaaatattaaggcatttctgtttttatctcaggaaatccaggatcgattaaaataacaccaactgtcaattttgcaataaaacaattatacttcttttaatagatcttgaataaaaagttattagccagtatggctatttgcgttattagcacgacgctctaagcgactaacggctatgcggccatttagttctatgctttatttcgtatgatcacttgtacat
gi|4 : aatgagacagcacgttgaaacaattcttcaaatgagtgactgtagtgaacaaaacataaacttgtagatttcggtcttaatttcaaaaaaTAAAAATGTATTGATGACAACAGACATCATGTCA-AAACAA--T-GT--CA--AAT-GATGAAACATGAA-GA-------AAACAAACCAGAAACTTGTTATAAAAGCATACTTGGAGAATCCGGGTATCGAT-CCCGGTACC--TCTCACATGCTAAGCGAGCGC-----------T-----------CTACCACTTGAGCTAATTCC------CCCATtatgtattaactcattaagactacgatagtgatatttcagcaatcgaatatttagatattctgtttccatttcaggaaacctagaatcggtaaaaataatagaaaatgtcaattttgcaataaaacagatatacttcttttaatagatcttgaataaaaagttattggccagtatggctatttacgttattagcacgacgcagtaagtgactaagcaatgcggccatttcgttctaagctttat
gi|11 : gattgggtggcctaccatggcgtgtttgcaatgcatgtgttataaattcaaatgaagggaaacttaaaaatgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcacgtggcaaagtatgatattacaacattaggaaacaataattacacaactactagtctcgtactaagctacatatcgtagaatcacttgttgatttcggttataatttcaaatattaaaaagatattaataatagtagacagcacgtggagacaattcttcaagtgagtgactgaagtgaacaaaacataaacttgtagatttcggttctaatttcaaaaaaATGTATTGATAATAATAGACAGCATGTTG-AGGCAA-AT-TT--CA--AAT-AATAAAGCACGAGTGATTCAAGTGAACAAAACAGAAACATGTccctttgcataaaacataaagactacaatgctgatatttcagcaattgattattaaggtatttttgtttcaattaggaccgaaatc
gi|5 : ACAGCACGTCA-ATGTAATAT-CT--CA--CAT-GATGAAGCA---------------AACAAAACATAAACTTGTCATAAAAGCAAATTTGGAGAATCCGGGTATCGAT-CCCGGTACC--TCTCACAT-----------GCTAAGCGAGCGTT-----------CTACCACTTGAGCTAATTCCCC-A-TTTCGTC-GTAGTAgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttccccattccgtcgtagtaaaatataattaatatgatgatgatgatatcaagttcagcaatcgagttttaagtttttttctgtttccatctcagaaaaacaagaatc
gi|7 : taactgTATTA-AGGCAA-TT-TT--CA--ACT-AATTAAGCACGA-TAATTAA-GTGAACAAAACAGAAACCTGTTGTATAAATACAGTTGGAGAATCCTGGTATCGAT-CTCGGTACT--TCTCACATGCTAATCGAGCGC-----------T-----------CTACCACTTGAGCTAATTCCCT-A-TTCAGTT-GTAGTAaaacataaacaatacgataatgataacaagttcagcaatcaaattgattttttttctgtttccatctcagataaacaagaaactattaaaaatagagaatgtcattttttgaataaaacttgcatattctcttttgtcagattgtgaattaaaatatattgcaattgtagatgtcgaacacaagatatttgcgtagccgaacatattctagaaatttgtatttcatcaaatagtgatacaataatgatgattgagataagattgattggactaccatgttcaggtatggccaatgagacagcacgttgaaacaattcttcaaatgagtgactgtagtgaacaaaacataaacttg
gi|9 : GGATATCGATTCCCGGTTCC--TCTCACAT-----------GC-----------TAAGCGAGTGCTCTACCACTTGAGCTAATTCCCCAT-TCCC-TT-GTAGTAaaatataattaatacgctgatgacatcgagttcagcaatcgaattttaaggcttttctgtttccatctattaaaaaatagaaatgccacatttttaataaaactcggataatcccttttgccagattgtgaattaaaatatatggcaattgtagacatcgaaaacaagatattcgcgttattgataagacaccctaaccgactgagctagccggacatattctagtaatttgtatttca
gi|9 : attttggtaaattttTTAGTCTTA-ATTTCAAATATTAAAAAGTTATTAATAATAA-TAGACAGaaacataattaatacgatgatgatatcatgacataaccgactgagcttaccggctatttcgtagtagtgatcattctggtccattttagtcttaatttcaaatattaaaaagttattaataataatagacagcacattaatgcaatttctcaattgataaagtaaacaaaacatactcttgttataaaaggatactttgagaatccgggtaccgatccctgtacccgtctcacatattattacgacgccctaacagactgagctaaccggacattttgtagtaatttgtatttcat
gi|4 : attttggtaaattttggatatcgattcccggttcctctcacatgctaagcgagtgctctaccacttgagctaattccccattcccttgtagtaaaacataattaatacgatgatgatatcatgacataaccgactgagcttaccggctatttcgtagtagtgatcattctggtccattTTTCAAATATTAAAAAGATATTAAT-AATAGTAGACAGCACG--TGG---AGACAATTCTT-CAAG--------TGAGTGACTGAAGTGAAcacattaatgcaatttctcaattgataaagtaaacaaaacatactcttgttataaaaggatactttgagaatccgggtaccgatccctgtacccgtctcacatattattacgacgccctaacagactgagctaaccggacattttgtagtaatttgtatttcat
gi|8 : gattgggtggcctaccatggcgtgtttgcaatgcatgtgttataaattcaaatgaagggaaacttaaaaatgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcacgtggcaaagtatgatattacaacattaggaaacaataattacacaactactagtctcgtactaagctacatatcgtagaatcacttgttgatttcggttataaTTTCAAATATTAAAAAGATATTAATAATAA-TAGACAGCACG--TGG---AGACAATTCTT-CAAG--------TGAGTGACTGAAGTGAAcaaaacataaacttgtagatttcggttctaatttcaaaaaataaaaatgtattgatgacaacagacatcatgtcaaaacaatgtcaaatgatgaaacatgaagaaaacaaaccagaaacttgttataaaagcatacttggagaatccgggtatcgatcccggtacctctcacatgctaagcgagcgctctaccacttgagctaattcccccatccctttgcataaaacataaagactacaatgctgatatttcagcaattgattattaaggtatttttgtttcaattaggaccgaaatc
gi|3 : agataagattggttggcctaccatggcgtgtttgcaatgcatgtgttataaattcaaatgaagggaaacttaaaaatgtaaaggtatggccagtgtggacggtggaaccctcgacattcgtgttattagtacaacgctctaacagactgtgctaaccgaccatgtggcaaagtatgatattacaacattaggaaacagtaattacacaactactagtctcgtactacgctacatatcgtaggatcacttgtagatttcggttataaAAATATTAAAAAGGTATTAATAATAA-TAGACAGCACGTTGAGACAAT-----TCTT-CAA--------ATGAGTGACTGAAGTGAAcaaaacataaacttgtagatttcggtcctaattgaaacaaaaataccttaataa
gi|12 : gataatattggttgacctactatggcgtgatttgcaatacatgtgttataaatacaaatgaagtgaaacataaaaatgtaacgttatggccagtgtgggggtcgtacccacgacatttgcattattagcacaacgcactaaccgactgagttaaccgaccatgtggcaaagtatgatattacaacattaggaaacaataattacacaactactagtctcgtactacgctacgtatcgtagaatcactagtggatttcggttattagttaAAATATTATGAATGTATTGATAATAA-TAGACAGCATGTTGAGGCAAA-----TTTCAAATAATAAAGCACGAGTGATTCAAGTGAAcaaaacataaacttgtagatttcggtcttaatttcagaaataaaaaatgtattgatgataacagacatcatggcaagacaatgtgacaaatgaagaaacatttgaagtgaacagaccagaaacttgttataaaagcctttttggagaatccgggtattgatcccggtacctctcacatgcttagggagcgctctaccacttgagctaattcccccgttctacgatgatgatttttcagcaatcaaatattaaggcatttctgtttttatctcaggaaatccaggatcgattaaaataacaccaactgtcaattttgcaataaaacaattatacttcttttaatagatcttgaataaaaagttattagccagtatggctatttgcgttattagcacgacgctctaagcgactaacggctatgcggccatttagttctatgctttatttcgtatgatcacttgtacat
gi|11 : caaggtatatttcttttaatagatcttgaataaaacgttattagccagtatggctatttgcgttattagcacgacgctctaagcgacttacggctatgcggccatttcgttctaagctttatttcgtacgataacagtcttgtacattgTATTGATAATAA-TAGACAGCATGTTGAGGCAAA-----TTTCAAATAATAAAGCACGAGTGATTCAAGTGAAcaaaacagaaacatgt
Alignments
lowQualScore : 111111111111
lowQualScore : 222222222222 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 2222 11111 4444444444444 33333 111 1111111 1 1 7777777777777777777777777777777 11 11 11 11 111 1 1 1 11 333333333333 11 33 999999999999 11
lowQualScore : 7 0 1 1 111111111111 5 5 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 1 22 3333 5 8 6 666 8 0 3 0 4 666 55 4 1 66666 5555555555555 33 3 4 4 3 888 0 1 9 666 8 2 3 55555 111 5555555 1 4 4 2 2 2 2 6 55 5 77 11 1 7 0 1 33 88 66 7777777777777777777777777777777 2 1 1 22 4 77 888 3 5 0 4 11 11 11 444 0 2 6 4 0 2 6 2 4 0 4 5 1 99 22 6 0 88 0 555555555555 9 88 7 6 1 6 6 6 6 1 44 777777777777 6 6 22
lowQualScore : . . . . ............ . . .............................................................................................. . . .. .... . . . ... . . . . . ... .. . . ..... ............. .. . . . . ... . . . ... . . . ..... ... ....... . . . . . . . . .. . .. .. . . . . .. .. .. ............................... . . . .. . .. ... . . . . .. .. .. ... . . . . . . . . . . . . . .. .. . . .. . ............ . .. . . . . . . . . .. ............ . . ..
lowQualScore : 3 9 9 0 222222222222 0 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 6 4 00 6666 7 6 0 999 7 4 9 7 2 777 55 0 0 00000 7777777777777 11 0 0 0 6 555 7 2 2 444 0 3 6 33333 555 0000000 0 0 6 6 3 5 4 1 22 0 00 99 7 8 5 0 33 88 11 2222222222222222222222222222222 0 1 1 22 4 66 999 0 7 8 6 00 00 00 000 5 0 0 2 0 0 0 5 2 5 0 0 0 77 00 7 7 33 7 333333333333 0 33 3 0 0 0 0 0 0 0 00 000000000000 0 0 00
consensus : GATAGATTGGCCTACCAATGGCGTGATTTGCAATACATGTGTTATAGAAACAAATGAAGGGAAACATAAAAA-A---TANAA--G-TA-TGGCCAGTGTGTGTGTGTGTGTTTGTGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTAGGAAACAATAATTACACAACTACTAGTCTCGTACTAAGCTACATATCGTAGGATCACTTGTAGATTTCGGTTATAATTTCAAATATTAAAAAGGTATTGATAAT-ATAAT-AGACAGCACGTTGAGACAATTCTTCAAATGAGTGACTGAAGTGAACAAAACATAAACTTGTAGATTTCGGTCCTAATTTCCGAAACTAAAAATGTATTGATGATAACAGACATCACGTCAAGGCA--A-TGT--C--AAATGATGAAGCA--CGA--------AGTGAACAAANCAGAAACTTGTTATAAAAGCATATTTGGAGAATCC-GGGTATCGAT-CCCGGTACCTCTCACATGCTAAGCGAGCGCTCTACCACTTGAGCTAATT-CCC-C-ATCCCGTTGTAGTAAAAC---ATNAANAC-TACGATGATGATATC-A-GTTCAGCAATCGAAT--ATTAAG-N-----TNTTT-CTGTTTCCATCTCAGGAAANCNAGAATCGATTAAAATAATAGAAAATGTCA-ATTT-TGCAATAAAACNGGTATACTCTCTTTTAATAGATCTTGAATNAAAAGTTAT-TGGCCA--GTATGG------------C-------------T----ATTTGCGTTATTAGCACGACGCTCTAAGCGACTGA--GCT-ACGCGGCCATTTCGTTCTA--NGNTT-TATTTCGTATGAT--CA--CTT--GT---ACATTGAAATGTTATAAATGTATTGATAATAATAGACAGCACGTTGAAGCAAATT-TCAAATAATAAAGCACGAATGATTAAAGTGAACANAACAGAAACCTGTTGTAAAAATATAGCTGGAGAATCCGGGTATCGATACCGGTACC--TTTCACAT------------GCTCTATC--ACTTGAGCTAATTCCTTTTCCCATTAGTAGTATGTTCCAGATATTAAGAAGTTATTAATAAATATAGACAGTCCG--GAG---AGTCTCACAAGATGAAGCACGAGTGATTGAGATGAAT
Reference ( family-8913 ) : GATAGATTGGCCTACCAATGGCGTGATTTGCAATACATGTGTTATAGAAANAAATGAAGGGAAACATAAAAA-A---CGNAA--G-TA-TGGCCAGTGTGTGTGTGTGTGTTTGTGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTAGGAAACAATAATTACACAACTACTAGTCTCGTACTAAGCTACATATCGTAGGATCACTTGTAGATTTCGGTTATAATTTCAAATATTAAAAAGGTATTGATAAT-ATAAT-AGACAGCACGTCGAGGCAATTCTTCAAATGAGTGACTGAAGTGAACAAAACATAAACTTGTAGATTTCGGTCCTAATTTCAAAAACTAAAAATGTATTGATAATAACAGACAGCACGTCGAGACA--A-TNT--C--AAATGATGAAGCA--CGA--------AGTGAACAAAACAGAAACTTGTTATAAAAGCATATTTGGAGAATCC-GGGTATCGAT-CCCGGTACCTCTCACATGCTAAGCGAGCGCTCTACCACTTGAGCTAATT-CCC-C-ATCCCGTCGTAGTAAAAC---ATTAANAC-TACGATGATGATATC-A-GTTCAGCAATCGAAT--ATTAAG-N-----TNTTT-CTGTTTCCATCTCAGGAAAACNAGAATCGATTAAAATAATAGAAAATGTCA-ATTT-TGCAATAAAACNGGCATACTCTCTTTTGACAGATCTTGAATNAAAAGTTAT-TGGCCA--GTATGG------------C-------------T----ATTCGCGTTATTAGCACGACGCTCTAAGCGACTGA--GCT-ACGCGGCCATTTCGTTCTA--NGCTT-TATTTCGTACGAT--CA--CTT--GT---ACATTGAAATATTAAAAATGTATTGATAATAATAGACAGCACGTCGAGGCAAATT-TCAAATGATGAAGCACGAGTGATTGAAGTGAACAAAACAGAAACTTGTTATAAAAGCATANTTGGAGAATCCGGGTATCGATCCCGGTACC--TCTCACATGCTA--GCGAGCGCTCTACC--ACTTGAGCTAATTCCCTNTCCCGTTAGTAGTATGTTTCAAATATTAAAAAGNTATTAATAATAATAGACAGCACGTTGAGGCAAGTCTCACAAGATAAAGCACGAGTGACTGAAGTGAAT
gi|1 : GATAGACTGGTTTACCAATGGCGTGATTTGCAATACATGTGTTATAGAAAAAATTGAAGGGAAACATAAAAA-A---TATGA--G-TA-TGGCCAGTGTGTGTGTGTGTGTTTGTGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTAGGAAACAATAATTACATAACTACTAGTCTCGTACTAAGCTTCACATCGTAGGATCACTTGTAGATTTCGGTTATAATTGTAAATATTAAAAAGGTATTGATAATTATAAT-AGACAGCACGTTGAGACAATTCTTCAAATGAGTGACTGAAGTGAACAAAACATAAACTTGTAGATTTCGGTCCTAATTTCCAAAACTAAAAATGTATTGATGATAACAGCCATCATGTCAAAA-A--A-TGT--C--AAATTATGAAACA--CAA--------AGTAAACAAACCAGAAACTTGTTATAAAAGCATATTTGGAGAATCC-GTGTATCGAT-CCCGGTACCTCTCATATGCTAAGTGATCGCTCTACCACTTTAGCTAAAT-CCC-TGATCCCATTGTA-TAAAAC---ATTAAGAC-TACGATAGTGATAT-----TTCAGCAATCGAAT--ATTAAG-A-----TATTT-CTGTTTCCATTTCAGGAAACCCAGAATCGGTTAAAATAACAGCAACTGTCA-ATTT-TGCAATAAAACAAGTATACT-TCTTTTAATAGATCTTGAATAAAAAGTTAT-TAGCCA--GTATGG------------C-------------T----ATTTGCGTTATTAGCACGACGCTCTAAGCGACTAA--GCT-ACGCGGCCATTTCGTTCTA--TGATT-TATTTCGTATGAT--CA--CTT--GT---ACATTGAAATGTTATAAATGTATTGATAATAATAAACAGCATGTTGAAGTAAATT-TCAAATAATAAAGCACGAATGATTAAAGTGAACATAACAGAAACCTGTTGTAAAAATATAGCTGGAGAATCCGGGTATCGATACTGGTACC--TTTCACAT------------GCTCTATC--ACTTGAGCTAATTCCTTTTCCCATTAGTAGTATGTTCCAGATATTAAGAAGTTATTAATAAATATAGACAGTCCG--GAG---AGTCTCACAAGATGAAGCACGAGTGATTGAGATGAAT
gi|10 : TAACTGACAGCACGTCAACTTA--A-TAT--CTCAAATGATGAAGCA-----------------AACAAAACATAAAATTGTCATAAAAGCNNNNNNNNNNNNNNN-NNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNN-N-NNNNNNNNNNNNNNNNNN---NNNNNNNN-NACGACAATAATATC-AAGTTCAGCAATCAAAT---TTAAT-T-----TTTTTTCTGTTTCCATCTGAGAAAAATAAGAAATTATTAAAA--ATAGAAAATGTCA-CTTTCTG-AATGCAAATGGCATATTCTCTTTCGTCAAATTGTGAATTAAAA--TATATGGCAA--G
gi|11 : ATGTATTGATAATAATAGACAGCATGTTGAGGCA--AATTT--C--AAATAATAAAGCA--CGAGTGATTCAAGTGAACAAAACAGAAACATGT-GTNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT-CCC-C-ATTCCGTCGTAGTAAAATATAATTAATAT-GATGATGATGATATCAA-GTTCAGCAATCGAGT--TTTAAGTT-----TTTTT-CTGTTTCCATCTCAGAAAAACAAGAATC
gi|12 : GGTATATT-TCTTTTAATAGATCTTGAATAAAACGTTAT-TAGCCA--GTATGG------------C-------------T----ATTTGCGTTATTAGCACGACGCTCTAAGCGACTTACGGCT-ATGCGGCCATTTCGTTCTA--AGCTT-TATTTCGTACGATAACAGTCTT--GT---ACATTGAAATATTATGAATGTATTGATAATAATAGACAGCATGTTGAGGCAAATT-TCAAATAATAAAGCACGAGTGATTCAAGTGAACAAAACAGAAACATGT
gi|13 : caaGCTAATT-CCC-C-ATTGCGTCGTAGTAAAAC---AT-AACACATACGACAATAATATC-AAGTTCAGCAATCAAAT---TTAAG-TGTTTTTTTTT-CTGTTTCCATCTCAGATAAACAAGATACTATTAAAA--ATAGAAAATGTCA-CTTT-TTGAATAAAACTGGCATATTCTTTT
gi|14 : GATAGATTGGCCTACCAATGACATAATTTGCAATACATGTGTTATAGAAACAAATGAAGGGAAACATAAAAATG---CAAAA--G-TACTGGCCAGTGTG
gi|15 : GATAGATTGGCCTACCAATGACATAATTTGTAATACATGTGTTATAGAAACAAATGAAGGGAAACATAAAAAGG---CAAAG--G-TA-TTGCCAGTAT
gi|16 : aATAGATTGGCCTACCAATGACATAATTTGTAATACATGTGTTATAGAAACATATGAAAACAAACATAAAAAGA---CAAAG--G-TA-TTGCCAGTAT
gi|17 : aaATAGATTGGCCTACCAATGAC-TGATTTGCAATACATGTGCTATAGAAAAAAATGAAAAGAAACATAAAAA-ATTGTAAAA--G-TA-TGGCCAGTGTG
gi|18 : AACAGACAGCACGTCAATGTAGTA-TCT--C--AAATGATGAAGCA-----------------AACAAAACATAAACTTG
gi|2 : GATAGACTGGTTTACCAATGGCGTGATTTGCAATACATGTGTTATAGAAAAAATTGAAGGGAAACATAAAAA-A---TATGA--G-TA-TGGCCAGTGTGTGTGTGTGTGTTTGTGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTAGGAAACAATAATTACATAACTACTAGTCTCGTACTAAGCTTCACATCGTAGGATCACTTGTAGATTTCGGTTATAATTGTAAATATTAAAAAGGTATTGATAATTATAAT-AGACAGCACGTTGAGACAATTCTTCAAATGAGTGACTGAAGTGAACAAAACATAAACTTGTAGATTTCGGTCCTAATTTCCAAAACTAAAAATGTATTGATGATAACAGCCATCATGTCAAAA-A--A-TGT--C--AAATTATGAAACA--CAA--------AGTAAACAAACCAGAAACTTGTTATAAAAGCATATTTGGAGAATCC-GTGTATCGAT-CCCGGTACCTCTCATATGCTAAGTGATCGCTCTACCACTTTAGCTAAAT-CCC-TGATCCCATTGTA-TAAAAC---ATTAAGAC-TACGATAGTGATAT-----TTCAGCAATCGAAT--ATTAAG-A-----TATTT-CTGTTTCCATTTCAGGAAACCCAGAATCGGTTAAAATAACAGCAACTGTCA-ATTT-TGCAATAAAACAAGTATACT-TCTTTTAATAGATCTTGAATAAAAAGTTAT-TAGCCA--GTATGG------------C-------------T----ATTTGCGTTATTAGCACGACGCTCTAAGCGACTAA--GCT-ACGCGGCCATTTCGTTCTA--TGATT-TATTTCGTATGAT--CA--CTT--GT---ACATTGAAATGTTATAAATGTATTGATAATAATAAACAGCATGTTGAAGTAAATT-TCAAATAATAAAGCACGAATGATTAAAGTGAACATAACAGAAACCTGTTGTAAAAATATAGCTGGAGAATCCGGGTATCGATACTGGTACC--TTTCACAT------------GCTCTATC--ACTTGAGCTAATTCCTTTTCCCATTAGTAGTATGTTCCAGATATTAAGAAGTTATTAATAAATATAGACAGTCCG--GAG---AGTCTCACAAGATGAAGCACGAGTGATTGAGATGAAT
gi|3 : ATTGGTTGACCTACTA-TGGCGTGATTTGCAATACATGTGTTATAAATACAAATGAAGTGAAACAT-AAAA-A---TGTAAC-GTTA-TGGCCAGTGTG
gi|3 : gataatAATGTAACGTTAT--GGCCA--GTGTGGGGGTCGTACCCACGA-----------C----ATTTGCATTATTAGCACAACGCACTAACCGACTGA--GTT-AACCGACCATggggtcgtacccacgacatttgcattattagcacaacgcactaaccgactgagttaaccgaccatgtggcaaagtatgatattacaacattaggaaacaataattacacaactactagtctcgtactacgctacgtatcgtagaatcactagtggatttcggttattagttaaaatattaaaaaggtattaataataatagacagcacgttgagacaattcttcaaatgagtgactgaagtgaacaaaacataaacttgtagatttcggtcttaatttcagaaataaaaaatgtattgatgataacagacatcatggcaagacaatgtgacaaatgaagaaacatttgaagtgaacagaccagaaacttgttataaaagcctttttggagaatccgggtattgatcccggtacctctcacatgcttagggagcgctctaccacttgagctaattcccccgttctacgatgatgatttttcagcaatcaaatattaaggcatttctgtttttatctcaggaaatccaggatcgattaaaataacaccaactgtcaattttgcaataaaacaattatacttcttttaatagatcttgaataaaaagttattagccagtatggctatttgcgttattagcacgacgctctaagcgactaacggctatgcggccatttagttctatgctttatttcgtatgatcacttgtacat
gi|3 : gataatattggttgacctactatggcgtgatttgcaatacatgtgttataaatacaaatgaagtgaaacataaaCATTAGGAAACAATAATTACACAACTACTAGTCTCGTACTACGCTACGTATCGTAGAATCACTAGTGGATTTCGGTTATTAGTTAAAATATTAAAAAGGTATTAATAAT-A--AT-AGACAGCACGTTGAGACAATTCTTCAAATGAGTGACTGAAGTGAACAAAACATAAACTTGTAGATTTCGGTCTTAATTTCAGAAATAAAAAATGTATTGATGATAACAGACATCATGGCAAGACA--A-TGTGAC--AAATGAAGAAACATTTGA--------AGTGAACAGACCAGAAACTTGTTATAAAAGCCTTTTTGGAGAATCC-GGGTATTGAT-CCCGGTACCTCTCACATGCTTAGGGAGCGCTCTACCACTTGAGCTAATT-CC------CCCGTT--------------------C-TACGATGATGATTT-----TTCAGCAATCAAAT--ATTAAG-G-----CATTT-CTGTTTTTATCTCAGGAAATCCAGGATCGATTAAAATAACACCAACTGTCA-ATTT-TGCAATAAAACAATTATACT-TCTTTTAATAGATCTTGAATAAAAAGTTAT-TAGCCA--GTATGG------------C-------------T----ATTTGCGTTATTAGCACGACGCTCTAAGCGACTAACGGCT-ATGCGGCCATTTAGTTCTA--TGCTT-TATTTCGTATGAT--CA--CTT--GT---ACATgtggcaaagtatgatattacaacattaggaaacaataattacacaactactagtctcgtactacgctacgtatcgtagaatcactagtggatttcggttattagttaaaatattaaaaaggtattaataataatagacagcacgttgagacaattcttcaaatgagtgactgaagtgaacaaaacataaacttgtagatttcggtcttaatttcagaaataaaaaatgtattgatgataacagacatcatggcaagacaatgtgacaaatgaagaaacatttgaagtgaacagaccagaaacttgttataaaagcctttttggagaatccgggtattgatcccggtacctctcacatgcttagggagcgctctaccacttgagctaattcccccgttctacgatgatgatttttcagcaatcaaatattaaggcatttctgtttttatctcaggaaatccaggatcgattaaaataacaccaactgtcaattttgcaataaaacaattatacttcttttaatagatcttgaataaaaagttattagccagtatggctatttgcgttattagcacgacgctctaagcgactaacggctatgcggccatttagttctatgctttatttcgtatgatcacttgtacat
gi|4 : gataatattggttgacctactatggcgtgatttgcaatacatgtgttataaatacaaatgaagtgaaacataaaaatgtaacgttatggccagtgtgggggtcgtacccacgacatttgcattattagcacaacgcactaaccgactgagttaaccgaccatgtggcaaagtatgatattacaaTGGCCTACCA-TGGCGTG-TTTGCAATGCATGTGTTATAAATTCAAATGAAGGGAAACTTAAAAA-
gi|4 : gattgggCATTAGGAAACAATAATTACACAACTACTAGTCTCGTACTAAGCTACATATCGTAGAATCACTTGTTGATTTCGGTTATAATTTCAAATATTAAAAAGATATTAATAAT-A--GT-AGACAGCACGTGGAGACAATTCTTCAAGTGAGTGACTGAAGTGAACAAAACATAAACTTGTAGATTTCGGTTCTAATTTCAAAAAATAAAAATGTATTGATGACAACAGACATCATGTCAAAACA--A-TGT--C--AAATGATGAAACA--TGA--------AGAAAACAAACCAGAAACTTGTTATAAAAGCATACTTGGAGAATCC-GGGTATCGAT-CCCGGTACCTCTCACATGCTAAGCGAGCGCTCTACCACTTGAGCTAATTCCCC-C-ATCCCTTTGCA-TAAAAC---ATAAAGAC-TACAATGCTGATAT-----TTCAGCAATTGATT--ATTAAG-G-----TATTT-TTGTTTCAA--TTAGGAtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcacgtggcaaagtatgatattacaacattaggaaacaataattacacaactactagtctcgtactaagctacatatcgtagaatcacttgttgatttcggttataatttcaaatattaaaaagatattaataatagtagacagcacgtggagacaattcttcaagtgagtgactgaagtgaacaaaacataaacttgtagatttcggttctaatttcaaaaaataaaaatgtattgatgacaacagacatcatgtcaaaacaatgtcaaatgatgaaacatgaagaaaacaaaccagaaacttgttataaaagcatacttggagaatccgggtatcgatcccggtacctctcacatgctaagcgagcgctctaccacttgagctaattcccccatccctttgcataaaacataaagactacaatgctgatatttcagcaattgattattaaggtatttttgtttcaattaggaccgaaatc
gi|4 : gattgggtggcctaccatggcgtgtttgcaatgcatgtgttataaattcaaatgaagggaaacttaaaaatgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcacgtggcaaagtatgatattacaaGATTTCGGTCCTAATT---GAAAC-AAAAATACCTTAATAATccgaaatc
gi|5 : gattgggtggcctaccatggcgtgtttgcaatgcatgtgttataaattcaaatgaagggaaacttaaaaatgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcacgtggcaaagtatgatattacaacattaggaaacaataattacacaactactagtctcgtactaagctacatatcgtagaatcacttgttgatttcggttataatttcaaatattaaaaagatattaataatagtagacagcacgtggagacaattcttcaagtgagtgactgaagtgaacaaaacataaacttgtagatttcggttctaatttcaaaaaataaaaatgtattgatgacaacagacatcatgtcaaaacaatgtcaaatgatgaaacatgaagaaaacaaaccagaaacttgttataaaagcatacttggagaatccgggtatcgatcccggtacctctcacatgctaagcgagcgctctaccacttgagctaattcccccatccctttgcataaaacataaagactacaatgctgatatttcagcaattgTAACTGACAGCACGTCAATGTA--A-TAT--CTCACATGATGAAGCA-----------------AACAAAACATAAACTTGTCATAAAAGCAAATTTGGAGAATCC-GGGTATCGAT-CCCGGTACCTCTCACATGCTAAGCGAGCGTTCTACCACTTGAGCTAATT-CCC-C-ATTTCGTCGTAGTAAAAC---ATAAACAA-TACGATAATGATAACAA-GTTCAGCAATCAAATTGATT----T-----TTTTT-CTGTTTCCATCTCAGATAAACAAGAAACTATTAAA--AATAGAGAATGTCA-TTTT-TTGAATAAAACTTGCATATTCTCTTTTGTCAGATTGTGAATTAAAATATAT-TG
gi|5 : AGGTATGGCCAAT-G-----AGACAGCACGTTGAAACAATTCTTCAAATGAGTGACTGTAGTGAACAAAACATAAACTTGcaattgtagatgtcgaacacaagatatttgcgtagccgaacatattctagaaatttgtatttcatcaaatagtgatacaataatgatgattgagataagattgattggactaccatgttcaggtatggccaatgagacagcacgttgaaacaattcttcaaatgagtgactgtagtgaacaaaacataaacttg
gi|6 : taactgacagcacgtcaatgtaatatctcacatgatgaagcaaacaaaacataaacttgtcataaaagcaaatttggagaatccgggtatcgatcccggtacctctcacatgctaagcgagcgttctaccacttgagctaattccccatttcgtcgtagtaaaacataaacaatacgataatgataacaagttcagcaatcaaattgattttttttctgtttccatctcagataaacaagaaactattaaaaatagagaatgtcattttttgaataaaacttgcatattctcttttgtcagattgtgaattaaaatatattgcaattgtagatgtcgaacacaagatatttgcgtagccgaacatattctagaaatttgtatttcatcaaatagtgatacaataatgatgattgagataagattgattggactaccatgttcAATGAGACAGCACGTTGAAACAATTCTTCAAATGAGTGACTGTAGTGAACAAAACATAAACTTGTAGATTTCGGTCTTAATTTCAAAAAATAAAAATGTATTGATGATAACAGACATCATGTCAAGACA--A-TGTCAC--AAATGATGAAACATTTGA--------AGTGAACAGACTAGAAACTTGTTATAAAAGCCTTTTTGGAGAATCC-GGGTATTGAT-CCCGGTACATCTCAAATGCTAAGCGAGCGCTCTACCACTTGAGTTAAGT-CCCTC-ATCCCTATGTATTAACTC---ATTAAGAC-TACGATAGTGATAT-----TTCAGCAATCGAAT--ATTTAG-A-----TA-TT-CTGTTTCCATTTCAGGAAACCTAGAATCGGTAAAAATAATAGAAAATGTCA-ATTT-TGCAATAAAACAGATATACT-TCTTTTAATAGATCTTGAATAAAAAGTTAT-TGGCCA--GTATGG------------C-------------T----ATTTACGTTATTAGCACGACGCAGTAAGTGACTAA--GCA-ATGCGGCCATTTCGTTCTA--AGCTT-TAT
gi|7 : AGGCA--A-TTTT-C--AACTAATTAAGCA--CGATAATTA--AGTGAACAAAACAGAAACCTGTTGTATAAATACAGTTGGAGAATCC-TGGTATCGAT-CTCGGTACTTCTCACATGCTAATCGAGCGCTCTACCACTTGAGCTAATT-CCC-T-ATTCAGTTGTAGTAAAAT---ATAATTAA-TACGCTGATGACATCGA-GTTCAGCAATCGAAT--TTTAAG-G-----CTTTT-CTGTTTCCATCT-----------------ATTAAAA-AATAG-AAATGCCACATTT-T-TAATAAAACTCGGATAATCCCTTTTGCCAGATTGTGAATTAAAA--TATATGGCAATTGTA-GA------------CATCGAAAACAAGAT----ATTCGCGTTATTGATAAGACACCCTAACCGACTGA--GCT-AGCCGGACAT---ATTCTAGTAATTTGTATTTC
gi|8 : tattaGATTGGTTGGCCTACCA-TGGCGTG-TTTGCAATGCATGTGTTATAAATTCAAATGAAGGGAAAC-TTAAAA-A---TGTAAAGG-TA-TGGCCAGTGTGa
gi|8 : agataaAATGTAAAGGTAT--GGCCA--GTGTGGACGGTGGAACC-C-------------TCGACATTCGTGTTATTAGTACAACGCTCTAACAGACTGT--GCT-AACCGACCATgacggtggaaccctcgacattcgtgttattagtacaacgctctaacagactgtgctaaccgaccatgtggcaaagtatgatattacaacattaggaaacagtaattacacaactactagtctcgtactacgctacatatcgtaggatcacttgtagatttcggttataatttcaaatattaaaaagatattaataataatagacagcacgtggagacaattcttcaagtgagtgactgaagtgaacaaaacataaacttgtagatttcggtcctaattgaaacaaaaataccttaataa
gi|8 : agataagattggttggcctaccatggcgtgtttgcaatgcatgtgttataaattcaaatgaagggaaacttaaaCATTAGGAAACAGTAATTACACAACTACTAGTCTCGTACTACGCTACATATCGTAGGATCACTTGTAGATTTCGGTTATAATTTCAAATATTAAAAAGATATTAATA---ATAAT-AGACAGCACGTGGAGACAATTCTTCAAGTGAGTGACTGAAGTGAACAAAACATAAACTTGTAGATTTCGGTCCTAATT---GAAAC-AAAAATACCTTAATAAgtggcaaagtatgatattacaacattaggaaacagtaattacacaactactagtctcgtactacgctacatatcgtaggatcacttgtagatttcggttataatttcaaatattaaaaagatattaataataatagacagcacgtggagacaattcttcaagtgagtgactgaagtgaacaaaacataaacttgtagatttcggtcctaattgaaacaaaaataccttaataa
gi|9 : agataagattggttggcctaccatggcgtgtttgcaatgcatgtgttataaattcaaatgaagggaaacttaaaaatgtaaaggtatggccagtgtggacggtggaaccctcgacattcgtgttattagtacaacgctctaacagactgtgctaaccgaccatgtggcaaagtatgatattacaaTTTGGTAAATTTTGGATATCGATTCCCGGTTCCTCTCACATGCTAAGCGAGTGCTCTACCACTTGAGCTAATT-CCC-C-ATTCCCTTGTAGTAAAAC---ATAATTAA-TACGATGATGATATC-A-
gi|9 : atTATCATGACA---TAACCGACTGA--GCTTAC-CGGCTATTTCGTAGTA--GTGAT-CATTCTG---GTC--CA--TTTTAGTCTTAATTTCAAATATTAAAAAGTTATTAATAATAATAGACAGCACATTAATGCAATTTCTCAATTGATAAAGTA---------------AACAAAACATACTCTTGTTATAAAAGGATACTTTGAGAATCCGGGTACCGATCCCTGTACCCGTCTCACATATTATTACGA-CGCCCTAACAGAC-TGAGCTAAtgacataaccgactgagcttaccggctatttcgtagtagtgatcattctggtccattttagtcttaatttcaaatattaaaaagttattaataataatagacagcacattaatgcaatttctcaattgataaagtaaacaaaacatactcttgttataaaaggatactttgagaatccgggtaccgatccctgtacccgtctcacatattattacgacgccctaacagactgagctaaccggacattttgtagtaatttgtatttcat
Alignments
lowQualScore : 22222 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 2222 11111 55555555555555555 11111 33333 111 111111 11 1 7777777777777777777777777777777 11 11 11 11 111 1 11
lowQualScore : 7 0 1 33333 1 5 5 5 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 1 22 3333 5 3 8 66 3 666 55 3 2 88888 22222222222222222 1 3 3 55 55 1 55 2 3 22222 1 7 666 5 2 3 55555 111 4 555555 1 2 2 2 2 55 6 55 5 77 11 7 0 1 33 88 66 7777777777777777777777777777777 1 1 22 4 77 66 1 77 11 8 11 11 444 2 1 3 3 0 3 0 3 1 0 0 88
lowQualScore : . . . ..... . . . . .............................................................................................. . . .. .... . . . .. . ... .. . . ..... ................. . . . .. .. . .. . . ..... . . ... . . . ..... ... . ...... . . . . . .. . .. . .. .. . . . .. .. .. ............................... . . .. . .. .. . .. .. . .. .. ... . . . . . . . . . . . ..
lowQualScore : 3 9 9 22222 0 0 0 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 6 4 00 6666 7 2 8 88 0 555 00 6 0 66666 33333333333333333 0 6 6 00 00 1 00 2 3 88888 9 6 444 8 3 6 33333 555 0 000000 0 6 6 3 5 55 1 22 0 00 99 8 5 0 33 88 11 2222222222222222222222222222222 1 1 22 4 66 77 0 99 00 0 00 00 000 0 2 2 2 0 2 8 2 0 2 7 33
consensus : GATAGATTGGCCTACCAATGGCGTGATTTGCAATACATGTGTTATAGAAACAAATGAAGGGAAACATAAAAA-A---TAAAA-G-TA-TGGCCAGTGTGTGTGTGTGTGTTTGTGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTAGGAAACAATAATTACACAACTACTAGTCTCGTACTAAGCTACATATCGTAGGATCACTTGTAGATTTCGGTTATAATTTCAAATATTAAAAAGGTATTGATAAT-ATAAT-AGACAGCACGTTGAGACAATTCTTCAAATGAGTGACTGAAGTGAACAAAACATAAACTTGTAGATTTCGGTCCTAATTTCAAAAACTAAAAATGTATTGATGATAACAGACANCACGTCAANGCA--A-TGT--C--AAATGATGAAGCA--CGA--------AGTGAACAAAACAGAAACTTGTTATAAAAGCATATTTGGAGAATCC-GGGTATCGAT-CCCGGTACC--TCTCACATGCTA--AGCGAGCGCTCTACC--ACTTGAGCTAATT-CCC---C-ATCCCGTTGTAGTAAAAC---ATNAANAC-TACGATGATGATATC-A-GTTCAGCAATCGAAT--ATTAA-G-----NTNTTTCTGTTTCCATCTCAGGAAANCNAGAATCGATTAAAATAATAGAAAATGTCA-ATTT-TGCAATAAAACNGGTATACTCTCTTTTAATAGATCTTGAATNAAAAGTTAT-TGGCCA--GTATGG------------C-------------T----ATTTGCGTTATTAGCACGACGCTCTAAGCGACTGA--GCT-ACGCGGCCATTTCGTTCTA-TGNTT--TATTTCGTATGAT--C-A--CTT--GT---ACATTGAAATGTTATAAATGTATTGATAATAATAGACAGCACGTTGAAGCAAATTTCAAAT-AATAAAGCACGAATGATTAAAGTGAACANAACAGAAACCTGTTGTAAAAATATAGCTGGAGAATCCGGGTATCGATACCGGTACC--TTTCACATGCTCTATCACTTGAGCTAATTCCTTTTCCCATTAGTAGTATGTTCCAGATATTAAGAAGTTATTAATAAATATAGACAGTCCGGAGAGTCTCACAAGATGAAGCACGAGTGATTGAGATGAAT
Reference ( family-8913 ) : GATAGATTGGCCTACCAATGGCGTGATTTGCAATACATGTGTTATAGAAACAAATGAAGGGAAACATAAAAA-A---TANAA-G-TA-TGGCCAGTGTGTGTGTGTGTGTTTGTGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTAGGAAACAATAATTACACAACTACTAGTCTCGTACTAAGCTACATATCGTAGGATCACTTGTAGATTTCGGTTATAATTTCAAATATTAAAAAGGTATTGATAAT-ATAAT-AGACAGCACGTTGAGACAATTCTTCAAATGAGTGACTGAAGTGAACAAAACATAAACTTGTAGATTTCGGTCCTAATTTCCGAAACTAAAAATGTATTGATGATAACAGACATCACGTCAAGGCA--A-TGT--C--AAATGATGAAGCA--CGA--------AGTGAACAAANCAGAAACTTGTTATAAAAGCATATTTGGAGAATCC-GGGTATCGAT-CCCGGTACC--TCTCACATGCTA--AGCGAGCGCTCTACC--ACTTGAGCTAATT-CCC---C-ATCCCGTTGTAGTAAAAC---ATNAANAC-TACGATGATGATATC-A-GTTCAGCAATCGAAT--ATTAA-G-----NTNTTTCTGTTTCCATCTCAGGAAANCNAGAATCGATTAAAATAATAGAAAATGTCA-ATTT-TGCAATAAAACNGGTATACTCTCTTTTAATAGATCTTGAATNAAAAGTTAT-TGGCCA--GTATGG------------C-------------T----ATTTGCGTTATTAGCACGACGCTCTAAGCGACTGA--GCT-ACGCGGCCATTTCGTTCTA-NGNTT--TATTTCGTATGAT--C-A--CTT--GT---ACATTGAAATGTTATAAATGTATTGATAATAATAGACAGCACGTTGAAGCAAATTTCAAAT-AATAAAGCACGAATGATTAAAGTGAACANAACAGAAACCTGTTGTAAAAATATAGCTGGAGAATCCGGGTATCGATACCGGTACC--TTTCACATGCTCTATCACTTGAGCTAATTCCTTTTCCCATTAGTAGTATGTTCCAGATATTAAGAAGTTATTAATAAATATAGACAGTCCGGAGAGTCTCACAAGATGAAGCACGAGTGATTGAGATGAAT
gi|1 : GATAGACTGGTTTACCAATGGCGTGATTTGCAATACATGTGTTATAGAAAAAATTGAAGGGAAACATAAAAA-A---TATGA-G-TA-TGGCCAGTGTGTGTGTGTGTGTTTGTGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTAGGAAACAATAATTACATAACTACTAGTCTCGTACTAAGCTTCACATCGTAGGATCACTTGTAGATTTCGGTTATAATTGTAAATATTAAAAAGGTATTGATAATTATAAT-AGACAGCACGTTGAGACAATTCTTCAAATGAGTGACTGAAGTGAACAAAACATAAACTTGTAGATTTCGGTCCTAATTTCCAAAACTAAAAATGTATTGATGATAACAGCCATCATGTCAAAA-A--A-TGT--C--AAATTATGAAACA--CAA--------AGTAAACAAACCAGAAACTTGTTATAAAAGCATATTTGGAGAATCC-GTGTATCGAT-CCCGGTACC--TCTCATATGCTA--AGTGATCGCTCTACC--ACTTTAGCTAAAT-CCC---TGATCCCATTGTA-TAAAAC---ATTAAGAC-TACGATAGTGATAT-----TTCAGCAATCGAAT--ATTAA-G-----ATATTTCTGTTTCCATTTCAGGAAACCCAGAATCGGTTAAAATAACAGCAACTGTCA-ATTT-TGCAATAAAACAAGTATACT-TCTTTTAATAGATCTTGAATAAAAAGTTAT-TAGCCA--GTATGG------------C-------------T----ATTTGCGTTATTAGCACGACGCTCTAAGCGACTAA--GCT-ACGCGGCCATTTCGTTCTA-TGATT--TATTTCGTATGAT--C-A--CTT--GT---ACATTGAAATGTTATAAATGTATTGATAATAATAAACAGCATGTTGAAGTAAATTTCAAAT-AATAAAGCACGAATGATTAAAGTGAACATAACAGAAACCTGTTGTAAAAATATAGCTGGAGAATCCGGGTATCGATACTGGTACC--TTTCACATGCTCTATCACTTGAGCTAATTCCTTTTCCCATTAGTAGTATGTTCCAGATATTAAGAAGTTATTAATAAATATAGACAGTCCGGAGAGTCTCACAAGATGAAGCACGAGTGATTGAGATGAAT
gi|10 : TAACTGACAGCACGTCAACTTA--A-TAT--CTCAAATGATGAAGCA-----------------AACAAAACATAAAATTGTCATAAAAGCNNNNNNNNNNNNNNN-NNNNNNNNNN-NNNNNNNNN--NNNNNNNNNNNN--NNNNNNNNNNNNNNN--NNNNNNNNNNNNN-NNN---N-NNNNNNNNNNNNNNNNNN---NNNNNNNN-NACGACAATAATATC-AAGTTCAGCAATCAAAT---TTAATT-----TTTTTTCTGTTTCCATCTGAGAAAAATAAGAAATTATTAAA--AATAGAAAATGTCA-CTTTCTG-AATGCAAATGGCATATTCTCTTTCGTCAAATTGTGAATTAAAA--TATATGGCAA--G
gi|11 : ATGTATTGATAATAATAGACAGCATGTTGAGGCA--AATTT--C--AAATAATAAAGCA--CGAGTGATTCAAGTGAACAAAACAGAAACATGT-GTNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNN-NNNNNNNNN--NNNNNNNNNNNN--NNNNNNNNNNNNNNN--NNNNNNNNNNNTT-CCC---C-ATTCCGTCGTAGTAAAATATAATTAATAT-GATGATGATGATATCAA-GTTCAGCAATCGAGT--TTTAA-GT----TTTTTTCTGTTTCCATCTCAGAAAAACAAGAATC
gi|12 : GGTATATT-TCTTTTAATAGATCTTGAATAAAACGTTAT-TAGCCA--GTATGG------------C-------------T----ATTTGCGTTATTAGCACGACGCTCTAAGCGACTTACGGCT-ATGCGGCCATTTCGTTCTA-AGCTT--TATTTCGTACGATAAC-AGTCTT--GT---ACATTGAAATATTATGAATGTATTGATAATAATAGACAGCATGTTGAGGCAAATTTCAAAT-AATAAAGCACGAGTGATTCAAGTGAACAAAACAGAAACATGT
gi|13 : caaGCTAATT-CCC---C-ATTGCGTCGTAGTAAAAC---AT-AACACATACGACAATAATATCAA-GTTCAGCAATCAAAT---TTAA-GTGTTTTTTTTTCTGTTTCCATCTCAGATAAACAAGATACTATTAAA--AATAGAAAATGTCA-CTTT-TTGAATAAAACTGGCATATTCTTTT
gi|14 : GATAGATTGGCCTACCAATGACATAATTTGCAATACATGTGTTATAGAAACAAATGAAGGGAAACATAAAAATG---CAAAA-G-TACTGGCCAGTGTG
gi|15 : GATAGATTGGCCTACCAATGACATAATTTGTAATACATGTGTTATAGAAACAAATGAAGGGAAACATAAAAAGG---CAAAG-G-TA-TTGCCAGTAT
gi|16 : aATAGATTGGCCTACCAATGACATAATTTGTAATACATGTGTTATAGAAACATATGAAAACAAACATAAAAAGA---CAAAG-G-TA-TTGCCAGTAT
gi|17 : aaATAGATTGGCCTACCAATGAC-TGATTTGCAATACATGTGCTATAGAAAAAAATGAAAAGAAACATAAAAA-ATTGTAAAA-G-TA-TGGCCAGTGTG
gi|18 : AACAGACAGCACGTCAATGTAGTA-TCT--C--AAATGATGAAGCA-----------------AACAAAACATAAACTTG
gi|2 : GATAGACTGGTTTACCAATGGCGTGATTTGCAATACATGTGTTATAGAAAAAATTGAAGGGAAACATAAAAA-A---TATGA-G-TA-TGGCCAGTGTGTGTGTGTGTGTTTGTGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTAGGAAACAATAATTACATAACTACTAGTCTCGTACTAAGCTTCACATCGTAGGATCACTTGTAGATTTCGGTTATAATTGTAAATATTAAAAAGGTATTGATAATTATAAT-AGACAGCACGTTGAGACAATTCTTCAAATGAGTGACTGAAGTGAACAAAACATAAACTTGTAGATTTCGGTCCTAATTTCCAAAACTAAAAATGTATTGATGATAACAGCCATCATGTCAAAA-A--A-TGT--C--AAATTATGAAACA--CAA--------AGTAAACAAACCAGAAACTTGTTATAAAAGCATATTTGGAGAATCC-GTGTATCGAT-CCCGGTACC--TCTCATATGCTA--AGTGATCGCTCTACC--ACTTTAGCTAAAT-CCC---TGATCCCATTGTA-TAAAAC---ATTAAGAC-TACGATAGTGATAT-----TTCAGCAATCGAAT--ATTAA-G-----ATATTTCTGTTTCCATTTCAGGAAACCCAGAATCGGTTAAAATAACAGCAACTGTCA-ATTT-TGCAATAAAACAAGTATACT-TCTTTTAATAGATCTTGAATAAAAAGTTAT-TAGCCA--GTATGG------------C-------------T----ATTTGCGTTATTAGCACGACGCTCTAAGCGACTAA--GCT-ACGCGGCCATTTCGTTCTA-TGATT--TATTTCGTATGAT--C-A--CTT--GT---ACATTGAAATGTTATAAATGTATTGATAATAATAAACAGCATGTTGAAGTAAATTTCAAAT-AATAAAGCACGAATGATTAAAGTGAACATAACAGAAACCTGTTGTAAAAATATAGCTGGAGAATCCGGGTATCGATACTGGTACC--TTTCACATGCTCTATCACTTGAGCTAATTCCTTTTCCCATTAGTAGTATGTTCCAGATATTAAGAAGTTATTAATAAATATAGACAGTCCGGAGAGTCTCACAAGATGAAGCACGAGTGATTGAGATGAAT
gi|3 : ATTGGTTGACCTACTA-TGGCGTGATTTGCAATACATGTGTTATAAATACAAATGAAGTGAAACAT-AAAA-A---TGTAACGTTA-TGGCCAGTGTG
gi|3 : gataatAATGTAACGTTAT--GGCCA--GTGTGGGGGTCGTACCCACGA-----------C----ATTTGCATTATTAGCACAACGCACTAACCGACTGA--GTT-AACCGACCATggggtcgtacccacgacatttgcattattagcacaacgcactaaccgactgagttaaccgaccatgtggcaaagtatgatattacaacattaggaaacaataattacacaactactagtctcgtactacgctacgtatcgtagaatcactagtggatttcggttattagttaaaatattaaaaaggtattaataataatagacagcacgttgagacaattcttcaaatgagtgactgaagtgaacaaaacataaacttgtagatttcggtcttaatttcagaaataaaaaatgtattgatgataacagacatcatggcaagacaatgtgacaaatgaagaaacatttgaagtgaacagaccagaaacttgttataaaagcctttttggagaatccgggtattgatcccggtacctctcacatgcttagggagcgctctaccacttgagctaattcccccgttctacgatgatgatttttcagcaatcaaatattaaggcatttctgtttttatctcaggaaatccaggatcgattaaaataacaccaactgtcaattttgcaataaaacaattatacttcttttaatagatcttgaataaaaagttattagccagtatggctatttgcgttattagcacgacgctctaagcgactaacggctatgcggccatttagttctatgctttatttcgtatgatcacttgtacat
gi|3 : gataatattggttgacctactatggcgtgatttgcaatacatgtgttataaatacaaatgaagtgaaacataaaCATTAGGAAACAATAATTACACAACTACTAGTCTCGTACTACGCTACGTATCGTAGAATCACTAGTGGATTTCGGTTATTAGTTAAAATATTAAAAAGGTATTAATAAT-A--AT-AGACAGCACGTTGAGACAATTCTTCAAATGAGTGACTGAAGTGAACAAAACATAAACTTGTAGATTTCGGTCTTAATTTCAGAAATAAAAAATGTATTGATGATAACAGACATCATGGCAAGACA--A-TGTGAC--AAATGAAGAAACATTTGA--------AGTGAACAGACCAGAAACTTGTTATAAAAGCCTTTTTGGAGAATCC-GGGTATTGAT-CCCGGTACC--TCTCACATGCTT--AGGGAGCGCTCTACC--ACTTGAGCTAATT-CC--------CCCGTT--------------------C-TACGATGATGATTT-----TTCAGCAATCAAAT--ATTAA-G-----GCATTTCTGTTTTTATCTCAGGAAATCCAGGATCGATTAAAATAACACCAACTGTCA-ATTT-TGCAATAAAACAATTATACT-TCTTTTAATAGATCTTGAATAAAAAGTTAT-TAGCCA--GTATGG------------C-------------T----ATTTGCGTTATTAGCACGACGCTCTAAGCGACTAACGGCT-ATGCGGCCATTTAGTTCTA-TGCTT--TATTTCGTATGAT--C-A--CTT--GT---ACATgtggcaaagtatgatattacaacattaggaaacaataattacacaactactagtctcgtactacgctacgtatcgtagaatcactagtggatttcggttattagttaaaatattaaaaaggtattaataataatagacagcacgttgagacaattcttcaaatgagtgactgaagtgaacaaaacataaacttgtagatttcggtcttaatttcagaaataaaaaatgtattgatgataacagacatcatggcaagacaatgtgacaaatgaagaaacatttgaagtgaacagaccagaaacttgttataaaagcctttttggagaatccgggtattgatcccggtacctctcacatgcttagggagcgctctaccacttgagctaattcccccgttctacgatgatgatttttcagcaatcaaatattaaggcatttctgtttttatctcaggaaatccaggatcgattaaaataacaccaactgtcaattttgcaataaaacaattatacttcttttaatagatcttgaataaaaagttattagccagtatggctatttgcgttattagcacgacgctctaagcgactaacggctatgcggccatttagttctatgctttatttcgtatgatcacttgtacat
gi|4 : gataatattggttgacctactatggcgtgatttgcaatacatgtgttataaatacaaatgaagtgaaacataaaaatgtaacgttatggccagtgtgggggtcgtacccacgacatttgcattattagcacaacgcactaaccgactgagttaaccgaccatgtggcaaagtatgatattacaaTGGCCTACCA-TGGCGTG-TTTGCAATGCATGTGTTATAAATTCAAATGAAGGGAAACTTAAAAA-
gi|4 : gattgggCATTAGGAAACAATAATTACACAACTACTAGTCTCGTACTAAGCTACATATCGTAGAATCACTTGTTGATTTCGGTTATAATTTCAAATATTAAAAAGATATTAATAAT-A--GT-AGACAGCACGTGGAGACAATTCTTCAAGTGAGTGACTGAAGTGAACAAAACATAAACTTGTAGATTTCGGTTCTAATTTCAAAAAATAAAAATGTATTGATGACAACAGACATCATGTCAAAACA--A-TGT--C--AAATGATGAAACA--TGA--------AGAAAACAAACCAGAAACTTGTTATAAAAGCATACTTGGAGAATCC-GGGTATCGAT-CCCGGTACC--TCTCACATGCTA--AGCGAGCGCTCTACC--ACTTGAGCTAATTCCCC---C-ATCCCTTTGCA-TAAAAC---ATAAAGAC-TACAATGCTGATAT-----TTCAGCAATTGATT--ATTAA-G-----GTATTTTTGTTTCAA--TTAGGAtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcacgtggcaaagtatgatattacaacattaggaaacaataattacacaactactagtctcgtactaagctacatatcgtagaatcacttgttgatttcggttataatttcaaatattaaaaagatattaataatagtagacagcacgtggagacaattcttcaagtgagtgactgaagtgaacaaaacataaacttgtagatttcggttctaatttcaaaaaataaaaatgtattgatgacaacagacatcatgtcaaaacaatgtcaaatgatgaaacatgaagaaaacaaaccagaaacttgttataaaagcatacttggagaatccgggtatcgatcccggtacctctcacatgctaagcgagcgctctaccacttgagctaattcccccatccctttgcataaaacataaagactacaatgctgatatttcagcaattgattattaaggtatttttgtttcaattaggaccgaaatc
gi|4 : gattgggtggcctaccatggcgtgtttgcaatgcatgtgttataaattcaaatgaagggaaacttaaaaatgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcacgtggcaaagtatgatattacaaGATTTCGGTCCTAATT---GAAAC-AAAAATACCTTAATAATccgaaatc
gi|5 : gattgggtggcctaccatggcgtgtttgcaatgcatgtgttataaattcaaatgaagggaaacttaaaaatgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcacgtggcaaagtatgatattacaacattaggaaacaataattacacaactactagtctcgtactaagctacatatcgtagaatcacttgttgatttcggttataatttcaaatattaaaaagatattaataatagtagacagcacgtggagacaattcttcaagtgagtgactgaagtgaacaaaacataaacttgtagatttcggttctaatttcaaaaaataaaaatgtattgatgacaacagacatcatgtcaaaacaatgtcaaatgatgaaacatgaagaaaacaaaccagaaacttgttataaaagcatacttggagaatccgggtatcgatcccggtacctctcacatgctaagcgagcgctctaccacttgagctaattcccccatccctttgcataaaacataaagactacaatgctgatatttcagcaattgTAACTGACAGCACGTCAATGTA--A-TAT--CTCACATGATGAAGCA-----------------AACAAAACATAAACTTGTCATAAAAGCAAATTTGGAGAATCC-GGGTATCGAT-CCCGGTACC--TCTCACATGCTA--AGCGAGCGTTCTACC--ACTTGAGCTAATT-CCC---C-ATTTCGTCGTAGTAAAAC---ATAAACAA-TACGATAATGATAACAA-GTTCAGCAATCAAATTGATT---------TTTTTTCTGTTTCCATCTCAGATAAACAAGAAACTATTAAA--AATAGAGAATGTCA-TTTT-TTGAATAAAACTTGCATATTCTCTTTTGTCAGATTGTGAATTAAAATATAT-TG
gi|5 : AGGTATGGCCAAT-G-----AGACAGCACGTTGAAACAATTCTTCAAATGAGTGACTGTAGTGAACAAAACATAAACTTGcaattgtagatgtcgaacacaagatatttgcgtagccgaacatattctagaaatttgtatttcatcaaatagtgatacaataatgatgattgagataagattgattggactaccatgttcaggtatggccaatgagacagcacgttgaaacaattcttcaaatgagtgactgtagtgaacaaaacataaacttg
gi|6 : taactgacagcacgtcaatgtaatatctcacatgatgaagcaaacaaaacataaacttgtcataaaagcaaatttggagaatccgggtatcgatcccggtacctctcacatgctaagcgagcgttctaccacttgagctaattccccatttcgtcgtagtaaaacataaacaatacgataatgataacaagttcagcaatcaaattgattttttttctgtttccatctcagataaacaagaaactattaaaaatagagaatgtcattttttgaataaaacttgcatattctcttttgtcagattgtgaattaaaatatattgcaattgtagatgtcgaacacaagatatttgcgtagccgaacatattctagaaatttgtatttcatcaaatagtgatacaataatgatgattgagataagattgattggactaccatgttcAATGAGACAGCACGTTGAAACAATTCTTCAAATGAGTGACTGTAGTGAACAAAACATAAACTTGTAGATTTCGGTCTTAATTTCAAAAAATAAAAATGTATTGATGATAACAGACATCATGTCAAGACA--A-TGTCAC--AAATGATGAAACATTTGA--------AGTGAACAGACTAGAAACTTGTTATAAAAGCCTTTTTGGAGAATCC-GGGTATTGAT-CCCGGTACA--TCTCAAATGCTA--AGCGAGCGCTCTACC--ACTTGAGTTAAGT-CCCT--C-ATCCCTATGTATTAACTC---ATTAAGAC-TACGATAGTGATAT-----TTCAGCAATCGAAT--ATTTA-G-----ATA-TTCTGTTTCCATTTCAGGAAACCTAGAATCGGTAAAAATAATAGAAAATGTCA-ATTT-TGCAATAAAACAGATATACT-TCTTTTAATAGATCTTGAATAAAAAGTTAT-TGGCCA--GTATGG------------C-------------T----ATTTACGTTATTAGCACGACGCAGTAAGTGACTAA--GCA-ATGCGGCCATTTCGTTCTA-AGCTT--TAT
gi|7 : TTAAGGCA--A-TTTT-C--AACTAATTAAGCA--CGATAATTA--AGTGAACAAAACAGAAACCTGTTGTATAAATACAGTTGGAGAATCC-TGGTATCGAT-CTCGGTACT--TCTCACATGCTA--ATCGAGCGCTCTACC--ACTTGAGCTAATT-CCC---T-ATTCAGTTGTAGTAAAAT---ATAATTAA-TACGCTGATGACATCGA-GTTCAGCAATCGAAT--TTTAA-G-----GCTTTTCTGTTTCCATCT-----------------ATTAAAA-AATAG-AAATGCCACATTT-T-TAATAAAACTCGGATAATCCCTTTTGCCAGATTGTGAATTAAAA--TATATGGCAATTGTA-GA------------CATCGAAAACAAGAT----ATTCGCGTTATTGATAAGACACCCTAACCGACTGA--GCT-AGCCGGACAT---ATTCTAGTAATTTGTATTTC
gi|8 : taGATTGGTTGGCCTACCA-TGGCGTG-TTTGCAATGCATGTGTTATAAATTCAAATGAAGGGAAACTTAAAAATG---TAAAG-G-TA-TGGCCAGTGTGa
gi|8 : agataaAATGTAAAGGTAT--GGCCA--GTGTGGACGGTGGAACC-C-------------TCGACATTCGTGTTATTAGTACAACGCTCTAACAGACTGT--GCT-AACCGACCATgacggtggaaccctcgacattcgtgttattagtacaacgctctaacagactgtgctaaccgaccatgtggcaaagtatgatattacaacattaggaaacagtaattacacaactactagtctcgtactacgctacatatcgtaggatcacttgtagatttcggttataatttcaaatattaaaaagatattaataataatagacagcacgtggagacaattcttcaagtgagtgactgaagtgaacaaaacataaacttgtagatttcggtcctaattgaaacaaaaataccttaataa
gi|8 : agataagattggttggcctaccatggcgtgtttgcaatgcatgtgttataaattcaaatgaagggaaacttaaaCATTAGGAAACAGTAATTACACAACTACTAGTCTCGTACTACGCTACATATCGTAGGATCACTTGTAGATTTCGGTTATAATTTCAAATATTAAAAAGATATTAATA---ATAAT-AGACAGCACGTGGAGACAATTCTTCAAGTGAGTGACTGAAGTGAACAAAACATAAACTTGTAGATTTCGGTCCTAATT---GAAAC-AAAAATACCTTAATAAgtggcaaagtatgatattacaacattaggaaacagtaattacacaactactagtctcgtactacgctacatatcgtaggatcacttgtagatttcggttataatttcaaatattaaaaagatattaataataatagacagcacgtggagacaattcttcaagtgagtgactgaagtgaacaaaacataaacttgtagatttcggtcctaattgaaacaaaaataccttaataa
gi|9 : agataagattggttggcctaccatggcgtgtttgcaatgcatgtgttataaattcaaatgaagggaaacttaaaaatgtaaaggtatggccagtgtggacggtggaaccctcgacattcgtgttattagtacaacgctctaacagactgtgctaaccgaccatgtggcaaagtatgatattacaaTTTGGTAAATTTTGGATATCGATTCCCGGTTCC--TCTCACATGCTA--AGCGAGTGCTCTACC--ACTTGAGCTAATT-CCC---C-ATTCCCTTGTAGTAAAAC---ATAATTAA-TACGATGATGATATC-A-
gi|9 : atTATCATGACA---TAACCGACTGA--GCTTAC-CGGCTATTTCGTAGTA-GTGAT--CATTC----TGGT--CCA--TTTTAGTCTTAATTTCAAATATTAAAAAGTTATTAATAATAATAGACAGCACATTAATGCAA-TTTC---TCAAT----------TGAT-AAAGTAAACAAAACATACTCTTGTTATAAAAGGATACTTTGAGAATCCGGGTACCGATCCCTGTACCCGTCTCACATtgacataaccgactgagcttaccggctatttcgtagtagtgatcattctggtccattttagtcttaatttcaaatattaaaaagttattaataataatagacagcacattaatgcaatttctcaattgataaagtaaacaaaacatactcttgttataaaaggatactttgagaatccgggtaccgatccctgtacccgtctcacatattattacgacgccctaacagactgagctaaccggacattttgtagtaatttgtatttcat
gi|9 : attttggtaaattttggatatcgattcccggttcctctcacatgctaagcgagtgctctaccacttgagctaattccccattcccttgtagtaaaacataattaatacgatgatgaATTTTAGTCTTAATTTCAAATATTAAAAAGTTATTAATAATAATAGACAGCACATTAATGCA--A-TTT--CTCAATTGATAAAGTA-----------------AACAAAACATACTCTTGTTATAAAAGGATACTTTGAGAATCC-GGGTACCGAT-CCCTGTACCCGTCTCACATATTATTA-CGA-CGCCCTAACAGAC-TGAGCTAA----CCGGAC-ATT---TTGTAGTAAattattacgacgccctaacagactgagctaaccggacattttgtagtaatttgtatttcat
Alignments
lowQualScore : 22222 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 2222 11111 55555555555555555 11111 33333 111 111111 11 1 7777777777777777777777777777777 11 1 11 11 11 111 1 11
lowQualScore : 7 0 1 99999 5 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 1 22 3333 5 3 3 66 1 444 55 3 2 88888 22222222222222222 1 3 3 55 55 1 55 2 3 22222 1 7 666 5 2 3 55555 111 4 555555 1 2 2 2 2 55 6 55 5 77 11 7 0 1 33 88 66 7777777777777777777777777777777 1 1 22 4 77 1 1 77 11 8 11 11 444 2 1 3 3 0 3 0 3 1 0 0 88
lowQualScore : . . . ..... . .............................................................................................. . . .. .... . . . .. . ... .. . . ..... ................. . . . .. .. . .. . . ..... . . ... . . . ..... ... . ...... . . . . . .. . .. . .. .. . . . .. .. .. ............................... . . .. . .. . . .. .. . .. .. ... . . . . . . . . . . . ..
lowQualScore : 3 9 9 55555 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 6 4 00 6666 7 2 0 88 0 000 00 6 0 66666 33333333333333333 9 6 6 00 00 1 00 2 3 88888 9 6 444 8 3 6 33333 555 0 000000 0 6 6 3 5 55 1 22 0 00 99 8 5 0 33 88 11 2222222222222222222222222222222 1 1 22 4 66 4 0 99 00 0 00 00 000 0 2 2 2 0 2 8 2 0 2 7 33
consensus : GATAGATTGGCCTACCAATGGCGTGATTTGCAATACATGTGTTATAGAAACAAATGAAGGGAAACATAAAAA-G---TAAAGGTA-TGGCCAGTGTGTGTGTGTGTGTTTGTGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTAGGAAACAATAATTACACAACTACTAGTCTCGTACTAAGCTACATATCGTAGGATCACTTGTAGATTTCGGTTATAATTTCAAATATTAAAAAGGTATTGATAAT-ATAAT-AGACAGCACGTTGAGACAATTCTTCAAATGAGTGACTGAAGTGAACAAAACATAAACTTGTAGATTTCGGTCCTAATTTCAAAAACTAAAAATGTATTGATGATAACAGACANCACGTCAANGCA--A-TGT--C--AAATGATGAAGCA--CGA--------AGTGAACAAAACAGAAACTTGTTATAAAAGCATATTTGGAGAATCC-GGGTATCGAT-CCCGGTACC--TCTCACATGCTA--AGCGAGCGCTCTACC--ACTTGAGCTAATT-CCC---C-ATCCCGTTGTAGTAAAAC---ATNAANAC-TACGATGATGATATC-A-GTTCAGCAATCGAAT--ATTAA-G-----NTNTTTCTGTTTCCATCTCAGGAAANCNAGAATCGATTAAAATAATAGAAAATGTCA-ATTT-TGCAATAAAACNGGTATACTCTCTTTTAATAGATCTTGAATNAAAAGTTAT-TGGCCA--GTATGG------------C-------------T----ATTTGCGTTATTAGCACGACGCTCTAAGCGACTGA--GCT-ACGCGGCCATTTCGTTCTA-TGATT--TATTTCGTATGAT--C-A--CTT--GT---ACATTGAAATGTTATAAATGTATTGATAATAATAGACAGCACGTTGAAGCAAATTTCAAAT-AATAAAGCACGAATGATTAAAGTGAACANAACAGAAACCTGTTGTAAAAATATAGCTGGAGAATCCGGGTATCGATACCGGTACC--TTTCACATGCTCTATCACTTGAGCTAATTCCTTTTCCCATTAGTAGTATGTTCCAGATATTAAGAAGTTATTAATAAATATAGACAGTCCGGAGAGTCTCACAAGATGAAGCACGAGTGATTGAGATGAAT
Reference ( family-8913 ) : GATAGATTGGCCTACCAATGGCGTGATTTGCAATACATGTGTTATAGAAACAAATGAAGGGAAACATAAAAA-A---TAAAAGTA-TGGCCAGTGTGTGTGTGTGTGTTTGTGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTAGGAAACAATAATTACACAACTACTAGTCTCGTACTAAGCTACATATCGTAGGATCACTTGTAGATTTCGGTTATAATTTCAAATATTAAAAAGGTATTGATAAT-ATAAT-AGACAGCACGTTGAGACAATTCTTCAAATGAGTGACTGAAGTGAACAAAACATAAACTTGTAGATTTCGGTCCTAATTTCAAAAACTAAAAATGTATTGATGATAACAGACANCACGTCAANGCA--A-TGT--C--AAATGATGAAGCA--CGA--------AGTGAACAAAACAGAAACTTGTTATAAAAGCATATTTGGAGAATCC-GGGTATCGAT-CCCGGTACC--TCTCACATGCTA--AGCGAGCGCTCTACC--ACTTGAGCTAATT-CCC---C-ATCCCGTTGTAGTAAAAC---ATNAANAC-TACGATGATGATATC-A-GTTCAGCAATCGAAT--ATTAA-G-----NTNTTTCTGTTTCCATCTCAGGAAANCNAGAATCGATTAAAATAATAGAAAATGTCA-ATTT-TGCAATAAAACNGGTATACTCTCTTTTAATAGATCTTGAATNAAAAGTTAT-TGGCCA--GTATGG------------C-------------T----ATTTGCGTTATTAGCACGACGCTCTAAGCGACTGA--GCT-ACGCGGCCATTTCGTTCTA-TGNTT--TATTTCGTATGAT--C-A--CTT--GT---ACATTGAAATGTTATAAATGTATTGATAATAATAGACAGCACGTTGAAGCAAATTTCAAAT-AATAAAGCACGAATGATTAAAGTGAACANAACAGAAACCTGTTGTAAAAATATAGCTGGAGAATCCGGGTATCGATACCGGTACC--TTTCACATGCTCTATCACTTGAGCTAATTCCTTTTCCCATTAGTAGTATGTTCCAGATATTAAGAAGTTATTAATAAATATAGACAGTCCGGAGAGTCTCACAAGATGAAGCACGAGTGATTGAGATGAAT
gi|1 : GATAGACTGGTTTACCAATGGCGTGATTTGCAATACATGTGTTATAGAAAAAATTGAAGGGAAACATAAAAA-A---TATGAGTA-TGGCCAGTGTGTGTGTGTGTGTTTGTGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTAGGAAACAATAATTACATAACTACTAGTCTCGTACTAAGCTTCACATCGTAGGATCACTTGTAGATTTCGGTTATAATTGTAAATATTAAAAAGGTATTGATAATTATAAT-AGACAGCACGTTGAGACAATTCTTCAAATGAGTGACTGAAGTGAACAAAACATAAACTTGTAGATTTCGGTCCTAATTTCCAAAACTAAAAATGTATTGATGATAACAGCCATCATGTCAAAA-A--A-TGT--C--AAATTATGAAACA--CAA--------AGTAAACAAACCAGAAACTTGTTATAAAAGCATATTTGGAGAATCC-GTGTATCGAT-CCCGGTACC--TCTCATATGCTA--AGTGATCGCTCTACC--ACTTTAGCTAAAT-CCC---TGATCCCATTGTA-TAAAAC---ATTAAGAC-TACGATAGTGATAT-----TTCAGCAATCGAAT--ATTAA-G-----ATATTTCTGTTTCCATTTCAGGAAACCCAGAATCGGTTAAAATAACAGCAACTGTCA-ATTT-TGCAATAAAACAAGTATACT-TCTTTTAATAGATCTTGAATAAAAAGTTAT-TAGCCA--GTATGG------------C-------------T----ATTTGCGTTATTAGCACGACGCTCTAAGCGACTAA--GCT-ACGCGGCCATTTCGTTCTA-TGATT--TATTTCGTATGAT--C-A--CTT--GT---ACATTGAAATGTTATAAATGTATTGATAATAATAAACAGCATGTTGAAGTAAATTTCAAAT-AATAAAGCACGAATGATTAAAGTGAACATAACAGAAACCTGTTGTAAAAATATAGCTGGAGAATCCGGGTATCGATACTGGTACC--TTTCACATGCTCTATCACTTGAGCTAATTCCTTTTCCCATTAGTAGTATGTTCCAGATATTAAGAAGTTATTAATAAATATAGACAGTCCGGAGAGTCTCACAAGATGAAGCACGAGTGATTGAGATGAAT
gi|10 : TAACTGACAGCACGTCAACTTA--A-TAT--CTCAAATGATGAAGCA-----------------AACAAAACATAAAATTGTCATAAAAGCNNNNNNNNNNNNNNN-NNNNNNNNNN-NNNNNNNNN--NNNNNNNNNNNN--NNNNNNNNNNNNNNN--NNNNNNNNNNNNN-NNN---N-NNNNNNNNNNNNNNNNNN---NNNNNNNN-NACGACAATAATATC-AAGTTCAGCAATCAAAT---TTAATT-----TTTTTTCTGTTTCCATCTGAGAAAAATAAGAAATTATTAAA--AATAGAAAATGTCA-CTTTCTG-AATGCAAATGGCATATTCTCTTTCGTCAAATTGTGAATTAAAA--TATATGGCAA--G
gi|11 : ATGTATTGATAATAATAGACAGCATGTTGAGGCA--AATTT--C--AAATAATAAAGCA--CGAGTGATTCAAGTGAACAAAACAGAAACATGT-GTNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNN-NNNNNNNNN--NNNNNNNNNNNN--NNNNNNNNNNNNNNN--NNNNNNNNNNNTT-CCC---C-ATTCCGTCGTAGTAAAATATAATTAATAT-GATGATGATGATATCAA-GTTCAGCAATCGAGT--TTTAA-GT----TTTTTTCTGTTTCCATCTCAGAAAAACAAGAATC
gi|12 : GGTATATT-TCTTTTAATAGATCTTGAATAAAACGTTAT-TAGCCA--GTATGG------------C-------------T----ATTTGCGTTATTAGCACGACGCTCTAAGCGACTTACGGCT-ATGCGGCCATTTCGTTCTA-AGCTT--TATTTCGTACGATAAC-AGTCTT--GT---ACATTGAAATATTATGAATGTATTGATAATAATAGACAGCATGTTGAGGCAAATTTCAAAT-AATAAAGCACGAGTGATTCAAGTGAACAAAACAGAAACATGT
gi|13 : caaGCTAATT-CCC---C-ATTGCGTCGTAGTAAAAC---AT-AACACATACGACAATAATATCAA-GTTCAGCAATCAAAT---TTAA-GTGTTTTTTTTTCTGTTTCCATCTCAGATAAACAAGATACTATTAAA--AATAGAAAATGTCA-CTTT-TTGAATAAAACTGGCATATTCTTTT
gi|14 : GATAGATTGGCCTACCAATGACATAATTTGCAATACATGTGTTATAGAAACAAATGAAGGGAAACATAAAAATG---CAAAAGTACTGGCCAGTGTG
gi|15 : GATAGATTGGCCTACCAATGACATAATTTGTAATACATGTGTTATAGAAACAAATGAAGGGAAACATAAAAAGG---CAAAGGTA-TTGCCAGTAT
gi|16 : aATAGATTGGCCTACCAATGACATAATTTGTAATACATGTGTTATAGAAACATATGAAAACAAACATAAAAAGA---CAAAGGTA-TTGCCAGTAT
gi|17 : aaATAGATTGGCCTACCAATGAC-TGATTTGCAATACATGTGCTATAGAAAAAAATGAAAAGAAACATAAAAA-ATTGTAAAAGTA-TGGCCAGTGTG
gi|18 : AACAGACAGCACGTCAATGTAGTA-TCT--C--AAATGATGAAGCA-----------------AACAAAACATAAACTTG
gi|2 : GATAGACTGGTTTACCAATGGCGTGATTTGCAATACATGTGTTATAGAAAAAATTGAAGGGAAACATAAAAA-A---TATGAGTA-TGGCCAGTGTGTGTGTGTGTGTTTGTGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTAGGAAACAATAATTACATAACTACTAGTCTCGTACTAAGCTTCACATCGTAGGATCACTTGTAGATTTCGGTTATAATTGTAAATATTAAAAAGGTATTGATAATTATAAT-AGACAGCACGTTGAGACAATTCTTCAAATGAGTGACTGAAGTGAACAAAACATAAACTTGTAGATTTCGGTCCTAATTTCCAAAACTAAAAATGTATTGATGATAACAGCCATCATGTCAAAA-A--A-TGT--C--AAATTATGAAACA--CAA--------AGTAAACAAACCAGAAACTTGTTATAAAAGCATATTTGGAGAATCC-GTGTATCGAT-CCCGGTACC--TCTCATATGCTA--AGTGATCGCTCTACC--ACTTTAGCTAAAT-CCC---TGATCCCATTGTA-TAAAAC---ATTAAGAC-TACGATAGTGATAT-----TTCAGCAATCGAAT--ATTAA-G-----ATATTTCTGTTTCCATTTCAGGAAACCCAGAATCGGTTAAAATAACAGCAACTGTCA-ATTT-TGCAATAAAACAAGTATACT-TCTTTTAATAGATCTTGAATAAAAAGTTAT-TAGCCA--GTATGG------------C-------------T----ATTTGCGTTATTAGCACGACGCTCTAAGCGACTAA--GCT-ACGCGGCCATTTCGTTCTA-TGATT--TATTTCGTATGAT--C-A--CTT--GT---ACATTGAAATGTTATAAATGTATTGATAATAATAAACAGCATGTTGAAGTAAATTTCAAAT-AATAAAGCACGAATGATTAAAGTGAACATAACAGAAACCTGTTGTAAAAATATAGCTGGAGAATCCGGGTATCGATACTGGTACC--TTTCACATGCTCTATCACTTGAGCTAATTCCTTTTCCCATTAGTAGTATGTTCCAGATATTAAGAAGTTATTAATAAATATAGACAGTCCGGAGAGTCTCACAAGATGAAGCACGAGTGATTGAGATGAAT
gi|3 : ATTGGTTGACCTACTA-TGGCGTGATTTGCAATACATGTGTTATAAATACAAATGAAGTGAAACATAAAAATG---TAACGTTA-TGGCCAGTGTG
gi|3 : gataatAATGTAACGTTAT--GGCCA--GTGTGGGGGTCGTACCCACGA-----------C----ATTTGCATTATTAGCACAACGCACTAACCGACTGA--GTT-AACCGACCATggggtcgtacccacgacatttgcattattagcacaacgcactaaccgactgagttaaccgaccatgtggcaaagtatgatattacaacattaggaaacaataattacacaactactagtctcgtactacgctacgtatcgtagaatcactagtggatttcggttattagttaaaatattaaaaaggtattaataataatagacagcacgttgagacaattcttcaaatgagtgactgaagtgaacaaaacataaacttgtagatttcggtcttaatttcagaaataaaaaatgtattgatgataacagacatcatggcaagacaatgtgacaaatgaagaaacatttgaagtgaacagaccagaaacttgttataaaagcctttttggagaatccgggtattgatcccggtacctctcacatgcttagggagcgctctaccacttgagctaattcccccgttctacgatgatgatttttcagcaatcaaatattaaggcatttctgtttttatctcaggaaatccaggatcgattaaaataacaccaactgtcaattttgcaataaaacaattatacttcttttaatagatcttgaataaaaagttattagccagtatggctatttgcgttattagcacgacgctctaagcgactaacggctatgcggccatttagttctatgctttatttcgtatgatcacttgtacat
gi|3 : gataatattggttgacctactatggcgtgatttgcaatacatgtgttataaatacaaatgaagtgaaacataaaCATTAGGAAACAATAATTACACAACTACTAGTCTCGTACTACGCTACGTATCGTAGAATCACTAGTGGATTTCGGTTATTAGTTAAAATATTAAAAAGGTATTAATAAT-A--AT-AGACAGCACGTTGAGACAATTCTTCAAATGAGTGACTGAAGTGAACAAAACATAAACTTGTAGATTTCGGTCTTAATTTCAGAAATAAAAAATGTATTGATGATAACAGACATCATGGCAAGACA--A-TGTGAC--AAATGAAGAAACATTTGA--------AGTGAACAGACCAGAAACTTGTTATAAAAGCCTTTTTGGAGAATCC-GGGTATTGAT-CCCGGTACC--TCTCACATGCTT--AGGGAGCGCTCTACC--ACTTGAGCTAATT-CC--------CCCGTT--------------------C-TACGATGATGATTT-----TTCAGCAATCAAAT--ATTAA-G-----GCATTTCTGTTTTTATCTCAGGAAATCCAGGATCGATTAAAATAACACCAACTGTCA-ATTT-TGCAATAAAACAATTATACT-TCTTTTAATAGATCTTGAATAAAAAGTTAT-TAGCCA--GTATGG------------C-------------T----ATTTGCGTTATTAGCACGACGCTCTAAGCGACTAACGGCT-ATGCGGCCATTTAGTTCTA-TGCTT--TATTTCGTATGAT--C-A--CTT--GT---ACATgtggcaaagtatgatattacaacattaggaaacaataattacacaactactagtctcgtactacgctacgtatcgtagaatcactagtggatttcggttattagttaaaatattaaaaaggtattaataataatagacagcacgttgagacaattcttcaaatgagtgactgaagtgaacaaaacataaacttgtagatttcggtcttaatttcagaaataaaaaatgtattgatgataacagacatcatggcaagacaatgtgacaaatgaagaaacatttgaagtgaacagaccagaaacttgttataaaagcctttttggagaatccgggtattgatcccggtacctctcacatgcttagggagcgctctaccacttgagctaattcccccgttctacgatgatgatttttcagcaatcaaatattaaggcatttctgtttttatctcaggaaatccaggatcgattaaaataacaccaactgtcaattttgcaataaaacaattatacttcttttaatagatcttgaataaaaagttattagccagtatggctatttgcgttattagcacgacgctctaagcgactaacggctatgcggccatttagttctatgctttatttcgtatgatcacttgtacat
gi|4 : gataatattggttgacctactatggcgtgatttgcaatacatgtgttataaatacaaatgaagtgaaacataaaaatgtaacgttatggccagtgtgggggtcgtacccacgacatttgcattattagcacaacgcactaaccgactgagttaaccgaccatgtggcaaagtatgatattacaaTGGCCTACCA-TGGCGTG-TTTGCAATGCATGTGTTATAAATTCAAATGAAGGGAAACTTAAAAA-
gi|4 : gattgggCATTAGGAAACAATAATTACACAACTACTAGTCTCGTACTAAGCTACATATCGTAGAATCACTTGTTGATTTCGGTTATAATTTCAAATATTAAAAAGATATTAATAAT-A--GT-AGACAGCACGTGGAGACAATTCTTCAAGTGAGTGACTGAAGTGAACAAAACATAAACTTGTAGATTTCGGTTCTAATTTCAAAAAATAAAAATGTATTGATGACAACAGACATCATGTCAAAACA--A-TGT--C--AAATGATGAAACA--TGA--------AGAAAACAAACCAGAAACTTGTTATAAAAGCATACTTGGAGAATCC-GGGTATCGAT-CCCGGTACC--TCTCACATGCTA--AGCGAGCGCTCTACC--ACTTGAGCTAATTCCCC---C-ATCCCTTTGCA-TAAAAC---ATAAAGAC-TACAATGCTGATAT-----TTCAGCAATTGATT--ATTAA-G-----GTATTTTTGTTTCAA--TTAGGAtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcacgtggcaaagtatgatattacaacattaggaaacaataattacacaactactagtctcgtactaagctacatatcgtagaatcacttgttgatttcggttataatttcaaatattaaaaagatattaataatagtagacagcacgtggagacaattcttcaagtgagtgactgaagtgaacaaaacataaacttgtagatttcggttctaatttcaaaaaataaaaatgtattgatgacaacagacatcatgtcaaaacaatgtcaaatgatgaaacatgaagaaaacaaaccagaaacttgttataaaagcatacttggagaatccgggtatcgatcccggtacctctcacatgctaagcgagcgctctaccacttgagctaattcccccatccctttgcataaaacataaagactacaatgctgatatttcagcaattgattattaaggtatttttgtttcaattaggaccgaaatc
gi|4 : gattgggtggcctaccatggcgtgtttgcaatgcatgtgttataaattcaaatgaagggaaacttaaaaatgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcacgtggcaaagtatgatattacaaGATTTCGGTCCTAATT---GAAAC-AAAAATACCTTAATAATccgaaatc
gi|5 : gattgggtggcctaccatggcgtgtttgcaatgcatgtgttataaattcaaatgaagggaaacttaaaaatgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcacgtggcaaagtatgatattacaacattaggaaacaataattacacaactactagtctcgtactaagctacatatcgtagaatcacttgttgatttcggttataatttcaaatattaaaaagatattaataatagtagacagcacgtggagacaattcttcaagtgagtgactgaagtgaacaaaacataaacttgtagatttcggttctaatttcaaaaaataaaaatgtattgatgacaacagacatcatgtcaaaacaatgtcaaatgatgaaacatgaagaaaacaaaccagaaacttgttataaaagcatacttggagaatccgggtatcgatcccggtacctctcacatgctaagcgagcgctctaccacttgagctaattcccccatccctttgcataaaacataaagactacaatgctgatatttcagcaattgTAACTGACAGCACGTCAATGTA--A-TAT--CTCACATGATGAAGCA-----------------AACAAAACATAAACTTGTCATAAAAGCAAATTTGGAGAATCC-GGGTATCGAT-CCCGGTACC--TCTCACATGCTA--AGCGAGCGTTCTACC--ACTTGAGCTAATT-CCC---C-ATTTCGTCGTAGTAAAAC---ATAAACAA-TACGATAATGATAACAA-GTTCAGCAATCAAATTGATT---------TTTTTTCTGTTTCCATCTCAGATAAACAAGAAACTATTAAA--AATAGAGAATGTCA-TTTT-TTGAATAAAACTTGCATATTCTCTTTTGTCAGATTGTGAATTAAAATATAT-TG
gi|5 : AGGTATGGCCAAT-G-----AGACAGCACGTTGAAACAATTCTTCAAATGAGTGACTGTAGTGAACAAAACATAAACTTGcaattgtagatgtcgaacacaagatatttgcgtagccgaacatattctagaaatttgtatttcatcaaatagtgatacaataatgatgattgagataagattgattggactaccatgttcaggtatggccaatgagacagcacgttgaaacaattcttcaaatgagtgactgtagtgaacaaaacataaacttg
gi|6 : taactgacagcacgtcaatgtaatatctcacatgatgaagcaaacaaaacataaacttgtcataaaagcaaatttggagaatccgggtatcgatcccggtacctctcacatgctaagcgagcgttctaccacttgagctaattccccatttcgtcgtagtaaaacataaacaatacgataatgataacaagttcagcaatcaaattgattttttttctgtttccatctcagataaacaagaaactattaaaaatagagaatgtcattttttgaataaaacttgcatattctcttttgtcagattgtgaattaaaatatattgcaattgtagatgtcgaacacaagatatttgcgtagccgaacatattctagaaatttgtatttcatcaaatagtgatacaataatgatgattgagataagattgattggactaccatgttcAATGAGACAGCACGTTGAAACAATTCTTCAAATGAGTGACTGTAGTGAACAAAACATAAACTTGTAGATTTCGGTCTTAATTTCAAAAAATAAAAATGTATTGATGATAACAGACATCATGTCAAGACA--A-TGTCAC--AAATGATGAAACATTTGA--------AGTGAACAGACTAGAAACTTGTTATAAAAGCCTTTTTGGAGAATCC-GGGTATTGAT-CCCGGTACA--TCTCAAATGCTA--AGCGAGCGCTCTACC--ACTTGAGTTAAGT-CCCT--C-ATCCCTATGTATTAACTC---ATTAAGAC-TACGATAGTGATAT-----TTCAGCAATCGAAT--ATTTA-G-----ATA-TTCTGTTTCCATTTCAGGAAACCTAGAATCGGTAAAAATAATAGAAAATGTCA-ATTT-TGCAATAAAACAGATATACT-TCTTTTAATAGATCTTGAATAAAAAGTTAT-TGGCCA--GTATGG------------C-------------T----ATTTACGTTATTAGCACGACGCAGTAAGTGACTAA--GCA-ATGCGGCCATTTCGTTCTA-AGCTT--TAT
gi|7 : TTAAGGCA--A-TTTT-C--AACTAATTAAGCA--CGATAATTA--AGTGAACAAAACAGAAACCTGTTGTATAAATACAGTTGGAGAATCC-TGGTATCGAT-CTCGGTACT--TCTCACATGCTA--ATCGAGCGCTCTACC--ACTTGAGCTAATT-CCC---T-ATTCAGTTGTAGTAAAAT---ATAATTAA-TACGCTGATGACATCGA-GTTCAGCAATCGAAT--TTTAA-G-----GCTTTTCTGTTTCCATCT-----------------ATTAAAA-AATAG-AAATGCCACATTT-T-TAATAAAACTCGGATAATCCCTTTTGCCAGATTGTGAATTAAAA--TATATGGCAATTGTA-GA------------CATCGAAAACAAGAT----ATTCGCGTTATTGATAAGACACCCTAACCGACTGA--GCT-AGCCGGACAT---ATTCTAGTAATTTGTATTTC
gi|8 : taGATTGGTTGGCCTACCA-TGGCGTG-TTTGCAATGCATGTGTTATAAATTCAAATGAAGGGAAACTTAAAAATG---TAAAGGTA-TGGCCAGTGTGa
gi|8 : agataaAATGTAAAGGTAT--GGCCA--GTGTGGACGGTGGAACC-C-------------TCGACATTCGTGTTATTAGTACAACGCTCTAACAGACTGT--GCT-AACCGACCATgacggtggaaccctcgacattcgtgttattagtacaacgctctaacagactgtgctaaccgaccatgtggcaaagtatgatattacaacattaggaaacagtaattacacaactactagtctcgtactacgctacatatcgtaggatcacttgtagatttcggttataatttcaaatattaaaaagatattaataataatagacagcacgtggagacaattcttcaagtgagtgactgaagtgaacaaaacataaacttgtagatttcggtcctaattgaaacaaaaataccttaataa
gi|8 : agataagattggttggcctaccatggcgtgtttgcaatgcatgtgttataaattcaaatgaagggaaacttaaaCATTAGGAAACAGTAATTACACAACTACTAGTCTCGTACTACGCTACATATCGTAGGATCACTTGTAGATTTCGGTTATAATTTCAAATATTAAAAAGATATTAATA---ATAAT-AGACAGCACGTGGAGACAATTCTTCAAGTGAGTGACTGAAGTGAACAAAACATAAACTTGTAGATTTCGGTCCTAATT---GAAAC-AAAAATACCTTAATAAgtggcaaagtatgatattacaacattaggaaacagtaattacacaactactagtctcgtactacgctacatatcgtaggatcacttgtagatttcggttataatttcaaatattaaaaagatattaataataatagacagcacgtggagacaattcttcaagtgagtgactgaagtgaacaaaacataaacttgtagatttcggtcctaattgaaacaaaaataccttaataa
gi|9 : agataagattggttggcctaccatggcgtgtttgcaatgcatgtgttataaattcaaatgaagggaaacttaaaaatgtaaaggtatggccagtgtggacggtggaaccctcgacattcgtgttattagtacaacgctctaacagactgtgctaaccgaccatgtggcaaagtatgatattacaaTTTGGTAAATTTTGGATATCGATTCCCGGTTCC--TCTCACATGCTA--AGCGAGTGCTCTACC--ACTTGAGCTAATT-CCC---C-ATTCCCTTGTAGTAAAAC---ATAATTAA-TACGATGATGATATC-A-
gi|9 : atTATCATGACA---TAACCGACTGA--GCTTAC-CGGCTATTTCGTAGTAGTGATC---ATTC----TGGT--CCA--TTTTAGTCTTAATTTCAAATATTAAAAAGTTATTAATAATAATAGACAGCACATTAATGCAA-TTTC---TCAAT----------TGAT-AAAGTAAACAAAACATACTCTTGTTATAAAAGGATACTTTGAGAATCCGGGTACCGATCCCTGTACCCGTCTCACATtgacataaccgactgagcttaccggctatttcgtagtagtgatcattctggtccattttagtcttaatttcaaatattaaaaagttattaataataatagacagcacattaatgcaatttctcaattgataaagtaaacaaaacatactcttgttataaaaggatactttgagaatccgggtaccgatccctgtacccgtctcacatattattacgacgccctaacagactgagctaaccggacattttgtagtaatttgtatttcat
gi|9 : attttggtaaattttggatatcgattcccggttcctctcacatgctaagcgagtgctctaccacttgagctaattccccattcccttgtagtaaaacataattaatacgatgatgaATTTTAGTCTTAATTTCAAATATTAAAAAGTTATTAATAATAATAGACAGCACATTAATGCA--A-TTT--CTCAATTGATAAAGTA-----------------AACAAAACATACTCTTGTTATAAAAGGATACTTTGAGAATCC-GGGTACCGAT-CCCTGTACCCGTCTCACATATTATTA-CGA-CGCCCTAACAGAC-TGAGCTAA----CCGGAC-ATT---TTGTAGTAAattattacgacgccctaacagactgagctaaccggacattttgtagtaatttgtatttcat
Alignments
lowQualScore : 222 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 2222 11111 55555555555555555 11111 33333 111 111111 11 1 7777777777777777777777777777777 11 1 11 11 11 111 1 11
lowQualScore : 7 0 1 555 5 5 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 1 22 3333 5 3 3 66 1 444 55 3 2 88888 22222222222222222 1 3 3 55 55 1 55 2 3 22222 1 7 666 5 2 3 55555 111 4 555555 1 2 2 2 2 55 6 55 5 77 11 7 0 1 33 88 66 7777777777777777777777777777777 1 1 22 4 77 1 1 77 11 8 11 11 444 2 1 3 3 0 3 0 3 1 0 0 88
lowQualScore : . . . ... . . .............................................................................................. . . .. .... . . . .. . ... .. . . ..... ................. . . . .. .. . .. . . ..... . . ... . . . ..... ... . ...... . . . . . .. . .. . .. .. . . . .. .. .. ............................... . . .. . .. . . .. .. . .. .. ... . . . . . . . . . . . ..
lowQualScore : 3 9 9 666 0 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 6 4 00 6666 7 2 0 88 0 000 00 6 0 66666 33333333333333333 9 6 6 00 00 1 00 2 3 88888 9 6 444 8 3 6 33333 555 0 000000 0 6 6 3 5 55 1 22 0 00 99 8 5 0 33 88 11 2222222222222222222222222222222 1 1 22 4 66 4 3 99 00 0 00 00 000 0 2 2 2 0 2 8 2 0 2 7 33
consensus : GATAGATTGGCCTACCAATGGCGTGATTTGCAATACATGTGTTATAGAAACAAATGAAGGGAAACATAAAAA---G-TAAAGGTA-TGGCCAGTGTGTGTGTGTGTGTTTGTGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTAGGAAACAATAATTACACAACTACTAGTCTCGTACTAAGCTACATATCGTAGGATCACTTGTAGATTTCGGTTATAATTTCAAATATTAAAAAGGTATTGATAAT-ATAAT-AGACAGCACGTTGAGACAATTCTTCAAATGAGTGACTGAAGTGAACAAAACATAAACTTGTAGATTTCGGTCCTAATTTCAAAAACTAAAAATGTATTGATGATAACAGACANCACGTCAANGCA--A-TGT--C--AAATGATGAAGCA--CGA--------AGTGAACAAAACAGAAACTTGTTATAAAAGCATATTTGGAGAATCC-GGGTATCGAT-CCCGGTACC--TCTCACATGCTA--AGCGAGCGCTCTACC--ACTTGAGCTAATT-CCC---C-ATCCCGTTGTAGTAAAAC---ATNAANAC-TACGATGATGATATC-A-GTTCAGCAATCGAAT--ATTAA-G-----NTNTTTCTGTTTCCATCTCAGGAAANCNAGAATCGATTAAAATAATAGAAAATGTCA-ATTT-TGCAATAAAACNGGTATACTCTCTTTTAATAGATCTTGAATNAAAAGTTAT-TGGCCA--GTATGG------------C-------------T----ATTTGCGTTATTAGCACGACGCTCTAAGCGACTGA--GCT-ACGCGGCCATTTCGTTCTA-TGATT--TATTTCGTATGAT--C-A--CTT--GT---ACATTGAAATGTTATAAATGTATTGATAATAATAGACAGCACGTTGAAGCAAATTTCAAAT-AATAAAGCACGAATGATTAAAGTGAACANAACAGAAACCTGTTGTAAAAATATAGCTGGAGAATCCGGGTATCGATACCGGTACC--TTTCACATGCTCTATCACTTGAGCTAATTCCTTTTCCCATTAGTAGTATGTTCCAGATATTAAGAAGTTATTAATAAATATAGACAGTCCGGAGAGTCTCACAAGATGAAGCACGAGTGATTGAGATGAAT
Reference ( family-8913 ) : GATAGATTGGCCTACCAATGGCGTGATTTGCAATACATGTGTTATAGAAACAAATGAAGGGAAACATAAAAA---G-TAAAGGTA-TGGCCAGTGTGTGTGTGTGTGTTTGTGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTAGGAAACAATAATTACACAACTACTAGTCTCGTACTAAGCTACATATCGTAGGATCACTTGTAGATTTCGGTTATAATTTCAAATATTAAAAAGGTATTGATAAT-ATAAT-AGACAGCACGTTGAGACAATTCTTCAAATGAGTGACTGAAGTGAACAAAACATAAACTTGTAGATTTCGGTCCTAATTTCAAAAACTAAAAATGTATTGATGATAACAGACANCACGTCAANGCA--A-TGT--C--AAATGATGAAGCA--CGA--------AGTGAACAAAACAGAAACTTGTTATAAAAGCATATTTGGAGAATCC-GGGTATCGAT-CCCGGTACC--TCTCACATGCTA--AGCGAGCGCTCTACC--ACTTGAGCTAATT-CCC---C-ATCCCGTTGTAGTAAAAC---ATNAANAC-TACGATGATGATATC-A-GTTCAGCAATCGAAT--ATTAA-G-----NTNTTTCTGTTTCCATCTCAGGAAANCNAGAATCGATTAAAATAATAGAAAATGTCA-ATTT-TGCAATAAAACNGGTATACTCTCTTTTAATAGATCTTGAATNAAAAGTTAT-TGGCCA--GTATGG------------C-------------T----ATTTGCGTTATTAGCACGACGCTCTAAGCGACTGA--GCT-ACGCGGCCATTTCGTTCTA-TGATT--TATTTCGTATGAT--C-A--CTT--GT---ACATTGAAATGTTATAAATGTATTGATAATAATAGACAGCACGTTGAAGCAAATTTCAAAT-AATAAAGCACGAATGATTAAAGTGAACANAACAGAAACCTGTTGTAAAAATATAGCTGGAGAATCCGGGTATCGATACCGGTACC--TTTCACATGCTCTATCACTTGAGCTAATTCCTTTTCCCATTAGTAGTATGTTCCAGATATTAAGAAGTTATTAATAAATATAGACAGTCCGGAGAGTCTCACAAGATGAAGCACGAGTGATTGAGATGAAT
gi|1 : GATAGACTGGTTTACCAATGGCGTGATTTGCAATACATGTGTTATAGAAAAAATTGAAGGGAAACATAAAAA---A-TATGAGTA-TGGCCAGTGTGTGTGTGTGTGTTTGTGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTAGGAAACAATAATTACATAACTACTAGTCTCGTACTAAGCTTCACATCGTAGGATCACTTGTAGATTTCGGTTATAATTGTAAATATTAAAAAGGTATTGATAATTATAAT-AGACAGCACGTTGAGACAATTCTTCAAATGAGTGACTGAAGTGAACAAAACATAAACTTGTAGATTTCGGTCCTAATTTCCAAAACTAAAAATGTATTGATGATAACAGCCATCATGTCAAAA-A--A-TGT--C--AAATTATGAAACA--CAA--------AGTAAACAAACCAGAAACTTGTTATAAAAGCATATTTGGAGAATCC-GTGTATCGAT-CCCGGTACC--TCTCATATGCTA--AGTGATCGCTCTACC--ACTTTAGCTAAAT-CCC---TGATCCCATTGTA-TAAAAC---ATTAAGAC-TACGATAGTGATAT-----TTCAGCAATCGAAT--ATTAA-G-----ATATTTCTGTTTCCATTTCAGGAAACCCAGAATCGGTTAAAATAACAGCAACTGTCA-ATTT-TGCAATAAAACAAGTATACT-TCTTTTAATAGATCTTGAATAAAAAGTTAT-TAGCCA--GTATGG------------C-------------T----ATTTGCGTTATTAGCACGACGCTCTAAGCGACTAA--GCT-ACGCGGCCATTTCGTTCTA-TGATT--TATTTCGTATGAT--C-A--CTT--GT---ACATTGAAATGTTATAAATGTATTGATAATAATAAACAGCATGTTGAAGTAAATTTCAAAT-AATAAAGCACGAATGATTAAAGTGAACATAACAGAAACCTGTTGTAAAAATATAGCTGGAGAATCCGGGTATCGATACTGGTACC--TTTCACATGCTCTATCACTTGAGCTAATTCCTTTTCCCATTAGTAGTATGTTCCAGATATTAAGAAGTTATTAATAAATATAGACAGTCCGGAGAGTCTCACAAGATGAAGCACGAGTGATTGAGATGAAT
gi|10 : TAACTGACAGCACGTCAACTTA--A-TAT--CTCAAATGATGAAGCA-----------------AACAAAACATAAAATTGTCATAAAAGCNNNNNNNNNNNNNNN-NNNNNNNNNN-NNNNNNNNN--NNNNNNNNNNNN--NNNNNNNNNNNNNNN--NNNNNNNNNNNNN-NNN---N-NNNNNNNNNNNNNNNNNN---NNNNNNNN-NACGACAATAATATC-AAGTTCAGCAATCAAAT---TTAATT-----TTTTTTCTGTTTCCATCTGAGAAAAATAAGAAATTATTAAA--AATAGAAAATGTCA-CTTTCTG-AATGCAAATGGCATATTCTCTTTCGTCAAATTGTGAATTAAAA--TATATGGCAA--G
gi|11 : ATGTATTGATAATAATAGACAGCATGTTGAGGCA--AATTT--C--AAATAATAAAGCA--CGAGTGATTCAAGTGAACAAAACAGAAACATGT-GTNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNN-NNNNNNNNN--NNNNNNNNNNNN--NNNNNNNNNNNNNNN--NNNNNNNNNNNTT-CCC---C-ATTCCGTCGTAGTAAAATATAATTAATAT-GATGATGATGATATCAA-GTTCAGCAATCGAGT--TTTAA-GT----TTTTTTCTGTTTCCATCTCAGAAAAACAAGAATC
gi|12 : GGTATATT-TCTTTTAATAGATCTTGAATAAAACGTTAT-TAGCCA--GTATGG------------C-------------T----ATTTGCGTTATTAGCACGACGCTCTAAGCGACTTACGGCT-ATGCGGCCATTTCGTTCTA-AGCTT--TATTTCGTACGATAAC-AGTCTT--GT---ACATTGAAATATTATGAATGTATTGATAATAATAGACAGCATGTTGAGGCAAATTTCAAAT-AATAAAGCACGAGTGATTCAAGTGAACAAAACAGAAACATGT
gi|13 : caaGCTAATT-CCC---C-ATTGCGTCGTAGTAAAAC---AT-AACACATACGACAATAATATCAA-GTTCAGCAATCAAAT---TTAA-GTGTTTTTTTTTCTGTTTCCATCTCAGATAAACAAGATACTATTAAA--AATAGAAAATGTCA-CTTT-TTGAATAAAACTGGCATATTCTTTT
gi|14 : GATAGATTGGCCTACCAATGACATAATTTGCAATACATGTGTTATAGAAACAAATGAAGGGAAACATAAAAAT--G-CAAAAGTACTGGCCAGTGTG
gi|15 : GATAGATTGGCCTACCAATGACATAATTTGTAATACATGTGTTATAGAAACAAATGAAGGGAAACATAAAAAG--G-CAAAGGTA-TTGCCAGTAT
gi|16 : aATAGATTGGCCTACCAATGACATAATTTGTAATACATGTGTTATAGAAACATATGAAAACAAACATAAAAA---GACAAAGGTA-TTGCCAGTAT
gi|17 : aaATAGATTGGCCTACCAATGAC-TGATTTGCAATACATGTGCTATAGAAAAAAATGAAAAGAAACATAAAAAATTG-TAAAAGTA-TGGCCAGTGTG
gi|18 : AACAGACAGCACGTCAATGTAGTA-TCT--C--AAATGATGAAGCA-----------------AACAAAACATAAACTTG
gi|2 : GATAGACTGGTTTACCAATGGCGTGATTTGCAATACATGTGTTATAGAAAAAATTGAAGGGAAACATAAAAA---A-TATGAGTA-TGGCCAGTGTGTGTGTGTGTGTTTGTGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTAGGAAACAATAATTACATAACTACTAGTCTCGTACTAAGCTTCACATCGTAGGATCACTTGTAGATTTCGGTTATAATTGTAAATATTAAAAAGGTATTGATAATTATAAT-AGACAGCACGTTGAGACAATTCTTCAAATGAGTGACTGAAGTGAACAAAACATAAACTTGTAGATTTCGGTCCTAATTTCCAAAACTAAAAATGTATTGATGATAACAGCCATCATGTCAAAA-A--A-TGT--C--AAATTATGAAACA--CAA--------AGTAAACAAACCAGAAACTTGTTATAAAAGCATATTTGGAGAATCC-GTGTATCGAT-CCCGGTACC--TCTCATATGCTA--AGTGATCGCTCTACC--ACTTTAGCTAAAT-CCC---TGATCCCATTGTA-TAAAAC---ATTAAGAC-TACGATAGTGATAT-----TTCAGCAATCGAAT--ATTAA-G-----ATATTTCTGTTTCCATTTCAGGAAACCCAGAATCGGTTAAAATAACAGCAACTGTCA-ATTT-TGCAATAAAACAAGTATACT-TCTTTTAATAGATCTTGAATAAAAAGTTAT-TAGCCA--GTATGG------------C-------------T----ATTTGCGTTATTAGCACGACGCTCTAAGCGACTAA--GCT-ACGCGGCCATTTCGTTCTA-TGATT--TATTTCGTATGAT--C-A--CTT--GT---ACATTGAAATGTTATAAATGTATTGATAATAATAAACAGCATGTTGAAGTAAATTTCAAAT-AATAAAGCACGAATGATTAAAGTGAACATAACAGAAACCTGTTGTAAAAATATAGCTGGAGAATCCGGGTATCGATACTGGTACC--TTTCACATGCTCTATCACTTGAGCTAATTCCTTTTCCCATTAGTAGTATGTTCCAGATATTAAGAAGTTATTAATAAATATAGACAGTCCGGAGAGTCTCACAAGATGAAGCACGAGTGATTGAGATGAAT
gi|3 : ATTGGTTGACCTACTA-TGGCGTGATTTGCAATACATGTGTTATAAATACAAATGAAGTGAAACATAAAAAT--G-TAACGTTA-TGGCCAGTGTG
gi|3 : gataatAATGTAACGTTAT--GGCCA--GTGTGGGGGTCGTACCCACGA-----------C----ATTTGCATTATTAGCACAACGCACTAACCGACTGA--GTT-AACCGACCATggggtcgtacccacgacatttgcattattagcacaacgcactaaccgactgagttaaccgaccatgtggcaaagtatgatattacaacattaggaaacaataattacacaactactagtctcgtactacgctacgtatcgtagaatcactagtggatttcggttattagttaaaatattaaaaaggtattaataataatagacagcacgttgagacaattcttcaaatgagtgactgaagtgaacaaaacataaacttgtagatttcggtcttaatttcagaaataaaaaatgtattgatgataacagacatcatggcaagacaatgtgacaaatgaagaaacatttgaagtgaacagaccagaaacttgttataaaagcctttttggagaatccgggtattgatcccggtacctctcacatgcttagggagcgctctaccacttgagctaattcccccgttctacgatgatgatttttcagcaatcaaatattaaggcatttctgtttttatctcaggaaatccaggatcgattaaaataacaccaactgtcaattttgcaataaaacaattatacttcttttaatagatcttgaataaaaagttattagccagtatggctatttgcgttattagcacgacgctctaagcgactaacggctatgcggccatttagttctatgctttatttcgtatgatcacttgtacat
gi|3 : gataatattggttgacctactatggcgtgatttgcaatacatgtgttataaatacaaatgaagtgaaacataaaCATTAGGAAACAATAATTACACAACTACTAGTCTCGTACTACGCTACGTATCGTAGAATCACTAGTGGATTTCGGTTATTAGTTAAAATATTAAAAAGGTATTAATAAT-A--AT-AGACAGCACGTTGAGACAATTCTTCAAATGAGTGACTGAAGTGAACAAAACATAAACTTGTAGATTTCGGTCTTAATTTCAGAAATAAAAAATGTATTGATGATAACAGACATCATGGCAAGACA--A-TGTGAC--AAATGAAGAAACATTTGA--------AGTGAACAGACCAGAAACTTGTTATAAAAGCCTTTTTGGAGAATCC-GGGTATTGAT-CCCGGTACC--TCTCACATGCTT--AGGGAGCGCTCTACC--ACTTGAGCTAATT-CC--------CCCGTT--------------------C-TACGATGATGATTT-----TTCAGCAATCAAAT--ATTAA-G-----GCATTTCTGTTTTTATCTCAGGAAATCCAGGATCGATTAAAATAACACCAACTGTCA-ATTT-TGCAATAAAACAATTATACT-TCTTTTAATAGATCTTGAATAAAAAGTTAT-TAGCCA--GTATGG------------C-------------T----ATTTGCGTTATTAGCACGACGCTCTAAGCGACTAACGGCT-ATGCGGCCATTTAGTTCTA-TGCTT--TATTTCGTATGAT--C-A--CTT--GT---ACATgtggcaaagtatgatattacaacattaggaaacaataattacacaactactagtctcgtactacgctacgtatcgtagaatcactagtggatttcggttattagttaaaatattaaaaaggtattaataataatagacagcacgttgagacaattcttcaaatgagtgactgaagtgaacaaaacataaacttgtagatttcggtcttaatttcagaaataaaaaatgtattgatgataacagacatcatggcaagacaatgtgacaaatgaagaaacatttgaagtgaacagaccagaaacttgttataaaagcctttttggagaatccgggtattgatcccggtacctctcacatgcttagggagcgctctaccacttgagctaattcccccgttctacgatgatgatttttcagcaatcaaatattaaggcatttctgtttttatctcaggaaatccaggatcgattaaaataacaccaactgtcaattttgcaataaaacaattatacttcttttaatagatcttgaataaaaagttattagccagtatggctatttgcgttattagcacgacgctctaagcgactaacggctatgcggccatttagttctatgctttatttcgtatgatcacttgtacat
gi|4 : gataatattggttgacctactatggcgtgatttgcaatacatgtgttataaatacaaatgaagtgaaacataaaaatgtaacgttatggccagtgtgggggtcgtacccacgacatttgcattattagcacaacgcactaaccgactgagttaaccgaccatgtggcaaagtatgatattacaaTGGCCTACCA-TGGCGTG-TTTGCAATGCATGTGTTATAAATTCAAATGAAGGGAAACTTAAAAA---
gi|4 : gattgggCATTAGGAAACAATAATTACACAACTACTAGTCTCGTACTAAGCTACATATCGTAGAATCACTTGTTGATTTCGGTTATAATTTCAAATATTAAAAAGATATTAATAAT-A--GT-AGACAGCACGTGGAGACAATTCTTCAAGTGAGTGACTGAAGTGAACAAAACATAAACTTGTAGATTTCGGTTCTAATTTCAAAAAATAAAAATGTATTGATGACAACAGACATCATGTCAAAACA--A-TGT--C--AAATGATGAAACA--TGA--------AGAAAACAAACCAGAAACTTGTTATAAAAGCATACTTGGAGAATCC-GGGTATCGAT-CCCGGTACC--TCTCACATGCTA--AGCGAGCGCTCTACC--ACTTGAGCTAATTCCCC---C-ATCCCTTTGCA-TAAAAC---ATAAAGAC-TACAATGCTGATAT-----TTCAGCAATTGATT--ATTAA-G-----GTATTTTTGTTTCAA--TTAGGAtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcacgtggcaaagtatgatattacaacattaggaaacaataattacacaactactagtctcgtactaagctacatatcgtagaatcacttgttgatttcggttataatttcaaatattaaaaagatattaataatagtagacagcacgtggagacaattcttcaagtgagtgactgaagtgaacaaaacataaacttgtagatttcggttctaatttcaaaaaataaaaatgtattgatgacaacagacatcatgtcaaaacaatgtcaaatgatgaaacatgaagaaaacaaaccagaaacttgttataaaagcatacttggagaatccgggtatcgatcccggtacctctcacatgctaagcgagcgctctaccacttgagctaattcccccatccctttgcataaaacataaagactacaatgctgatatttcagcaattgattattaaggtatttttgtttcaattaggaccgaaatc
gi|4 : gattgggtggcctaccatggcgtgtttgcaatgcatgtgttataaattcaaatgaagggaaacttaaaaatgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcacgtggcaaagtatgatattacaaGATTTCGGTCCTAATT---GAAAC-AAAAATACCTTAATAATccgaaatc
gi|5 : gattgggtggcctaccatggcgtgtttgcaatgcatgtgttataaattcaaatgaagggaaacttaaaaatgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcacgtggcaaagtatgatattacaacattaggaaacaataattacacaactactagtctcgtactaagctacatatcgtagaatcacttgttgatttcggttataatttcaaatattaaaaagatattaataatagtagacagcacgtggagacaattcttcaagtgagtgactgaagtgaacaaaacataaacttgtagatttcggttctaatttcaaaaaataaaaatgtattgatgacaacagacatcatgtcaaaacaatgtcaaatgatgaaacatgaagaaaacaaaccagaaacttgttataaaagcatacttggagaatccgggtatcgatcccggtacctctcacatgctaagcgagcgctctaccacttgagctaattcccccatccctttgcataaaacataaagactacaatgctgatatttcagcaattgTAACTGACAGCACGTCAATGTA--A-TAT--CTCACATGATGAAGCA-----------------AACAAAACATAAACTTGTCATAAAAGCAAATTTGGAGAATCC-GGGTATCGAT-CCCGGTACC--TCTCACATGCTA--AGCGAGCGTTCTACC--ACTTGAGCTAATT-CCC---C-ATTTCGTCGTAGTAAAAC---ATAAACAA-TACGATAATGATAACAA-GTTCAGCAATCAAATTGATT---------TTTTTTCTGTTTCCATCTCAGATAAACAAGAAACTATTAAA--AATAGAGAATGTCA-TTTT-TTGAATAAAACTTGCATATTCTCTTTTGTCAGATTGTGAATTAAAATATAT-TG
gi|5 : AGGTATGGCCAAT-G-----AGACAGCACGTTGAAACAATTCTTCAAATGAGTGACTGTAGTGAACAAAACATAAACTTGcaattgtagatgtcgaacacaagatatttgcgtagccgaacatattctagaaatttgtatttcatcaaatagtgatacaataatgatgattgagataagattgattggactaccatgttcaggtatggccaatgagacagcacgttgaaacaattcttcaaatgagtgactgtagtgaacaaaacataaacttg
gi|6 : taactgacagcacgtcaatgtaatatctcacatgatgaagcaaacaaaacataaacttgtcataaaagcaaatttggagaatccgggtatcgatcccggtacctctcacatgctaagcgagcgttctaccacttgagctaattccccatttcgtcgtagtaaaacataaacaatacgataatgataacaagttcagcaatcaaattgattttttttctgtttccatctcagataaacaagaaactattaaaaatagagaatgtcattttttgaataaaacttgcatattctcttttgtcagattgtgaattaaaatatattgcaattgtagatgtcgaacacaagatatttgcgtagccgaacatattctagaaatttgtatttcatcaaatagtgatacaataatgatgattgagataagattgattggactaccatgttcAATGAGACAGCACGTTGAAACAATTCTTCAAATGAGTGACTGTAGTGAACAAAACATAAACTTGTAGATTTCGGTCTTAATTTCAAAAAATAAAAATGTATTGATGATAACAGACATCATGTCAAGACA--A-TGTCAC--AAATGATGAAACATTTGA--------AGTGAACAGACTAGAAACTTGTTATAAAAGCCTTTTTGGAGAATCC-GGGTATTGAT-CCCGGTACA--TCTCAAATGCTA--AGCGAGCGCTCTACC--ACTTGAGTTAAGT-CCCT--C-ATCCCTATGTATTAACTC---ATTAAGAC-TACGATAGTGATAT-----TTCAGCAATCGAAT--ATTTA-G-----ATA-TTCTGTTTCCATTTCAGGAAACCTAGAATCGGTAAAAATAATAGAAAATGTCA-ATTT-TGCAATAAAACAGATATACT-TCTTTTAATAGATCTTGAATAAAAAGTTAT-TGGCCA--GTATGG------------C-------------T----ATTTACGTTATTAGCACGACGCAGTAAGTGACTAA--GCA-ATGCGGCCATTTCGTTCTA-AGCTT--TAT
gi|7 : TTAAGGCA--A-TTTT-C--AACTAATTAAGCA--CGATAATTA--AGTGAACAAAACAGAAACCTGTTGTATAAATACAGTTGGAGAATCC-TGGTATCGAT-CTCGGTACT--TCTCACATGCTA--ATCGAGCGCTCTACC--ACTTGAGCTAATT-CCC---T-ATTCAGTTGTAGTAAAAT---ATAATTAA-TACGCTGATGACATCGA-GTTCAGCAATCGAAT--TTTAA-G-----GCTTTTCTGTTTCCATCT-----------------ATTAAAA-AATAG-AAATGCCACATTT-T-TAATAAAACTCGGATAATCCCTTTTGCCAGATTGTGAATTAAAA--TATATGGCAATTGTA-GA------------CATCGAAAACAAGAT----ATTCGCGTTATTGATAAGACACCCTAACCGACTGA--GCT-AGCCGGACAT---ATTCTAGTAATTTGTATTTC
gi|8 : taGATTGGTTGGCCTACCA-TGGCGTG-TTTGCAATGCATGTGTTATAAATTCAAATGAAGGGAAACTTAAAAAT--G-TAAAGGTA-TGGCCAGTGTGa
gi|8 : agataaAATGTAAAGGTAT--GGCCA--GTGTGGACGGTGGAACC-C-------------TCGACATTCGTGTTATTAGTACAACGCTCTAACAGACTGT--GCT-AACCGACCATgacggtggaaccctcgacattcgtgttattagtacaacgctctaacagactgtgctaaccgaccatgtggcaaagtatgatattacaacattaggaaacagtaattacacaactactagtctcgtactacgctacatatcgtaggatcacttgtagatttcggttataatttcaaatattaaaaagatattaataataatagacagcacgtggagacaattcttcaagtgagtgactgaagtgaacaaaacataaacttgtagatttcggtcctaattgaaacaaaaataccttaataa
gi|8 : agataagattggttggcctaccatggcgtgtttgcaatgcatgtgttataaattcaaatgaagggaaacttaaaCATTAGGAAACAGTAATTACACAACTACTAGTCTCGTACTACGCTACATATCGTAGGATCACTTGTAGATTTCGGTTATAATTTCAAATATTAAAAAGATATTAATA---ATAAT-AGACAGCACGTGGAGACAATTCTTCAAGTGAGTGACTGAAGTGAACAAAACATAAACTTGTAGATTTCGGTCCTAATT---GAAAC-AAAAATACCTTAATAAgtggcaaagtatgatattacaacattaggaaacagtaattacacaactactagtctcgtactacgctacatatcgtaggatcacttgtagatttcggttataatttcaaatattaaaaagatattaataataatagacagcacgtggagacaattcttcaagtgagtgactgaagtgaacaaaacataaacttgtagatttcggtcctaattgaaacaaaaataccttaataa
gi|9 : agataagattggttggcctaccatggcgtgtttgcaatgcatgtgttataaattcaaatgaagggaaacttaaaaatgtaaaggtatggccagtgtggacggtggaaccctcgacattcgtgttattagtacaacgctctaacagactgtgctaaccgaccatgtggcaaagtatgatattacaaTTTGGTAAATTTTGGATATCGATTCCCGGTTCC--TCTCACATGCTA--AGCGAGTGCTCTACC--ACTTGAGCTAATT-CCC---C-ATTCCCTTGTAGTAAAAC---ATAATTAA-TACGATGATGATATC-A-
gi|9 : atTATCATGACA---TAACCGACTGA--GCTTAC-CGGCTATTTCGTAGTAGTGATC---ATTC----TGGT--CCA--TTTTAGTCTTAATTTCAAATATTAAAAAGTTATTAATAATAATAGACAGCACATTAATGCAA-TTTC---TCAAT----------TGAT-AAAGTAAACAAAACATACTCTTGTTATAAAAGGATACTTTGAGAATCCGGGTACCGATCCCTGTACCCGTCTCACATtgacataaccgactgagcttaccggctatttcgtagtagtgatcattctggtccattttagtcttaatttcaaatattaaaaagttattaataataatagacagcacattaatgcaatttctcaattgataaagtaaacaaaacatactcttgttataaaaggatactttgagaatccgggtaccgatccctgtacccgtctcacatattattacgacgccctaacagactgagctaaccggacattttgtagtaatttgtatttcat
gi|9 : attttggtaaattttggatatcgattcccggttcctctcacatgctaagcgagtgctctaccacttgagctaattccccattcccttgtagtaaaacataattaatacgatgatgaATTTTAGTCTTAATTTCAAATATTAAAAAGTTATTAATAATAATAGACAGCACATTAATGCA--A-TTT--CTCAATTGATAAAGTA-----------------AACAAAACATACTCTTGTTATAAAAGGATACTTTGAGAATCC-GGGTACCGAT-CCCTGTACCCGTCTCACATATTATTA-CGA-CGCCCTAACAGAC-TGAGCTAA----CCGGAC-ATT---TTGTAGTAAattattacgacgccctaacagactgagctaaccggacattttgtagtaatttgtatttcat
Alignments
lowQualScore : 222 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 2222 11111 55555555555555555 11111 33333 111 111111 11 1 7777777777777777777777777777777 11 1 11 11 11 111 1 11
lowQualScore : 7 0 1 555 5 5 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 1 22 3333 5 3 3 66 1 444 55 3 2 88888 22222222222222222 1 3 3 55 55 1 55 2 3 22222 1 7 666 5 2 3 55555 111 4 555555 1 2 2 2 2 55 6 55 5 77 11 7 0 1 33 88 66 7777777777777777777777777777777 1 1 22 4 77 1 1 77 11 8 11 11 444 2 1 3 3 0 3 0 3 1 0 0 88
lowQualScore : . . . ... . . .............................................................................................. . . .. .... . . . .. . ... .. . . ..... ................. . . . .. .. . .. . . ..... . . ... . . . ..... ... . ...... . . . . . .. . .. . .. .. . . . .. .. .. ............................... . . .. . .. . . .. .. . .. .. ... . . . . . . . . . . . ..
lowQualScore : 3 9 9 666 0 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 6 4 00 6666 7 2 0 88 0 000 00 6 0 66666 33333333333333333 9 6 6 00 00 1 00 2 3 88888 9 6 444 8 3 6 33333 555 0 000000 0 6 6 3 5 55 1 22 0 00 99 8 5 0 33 88 11 2222222222222222222222222222222 1 1 22 4 66 4 3 99 00 0 00 00 000 0 2 2 2 0 2 8 2 0 2 7 33
consensus : GATAGATTGGCCTACCAATGGCGTGATTTGCAATACATGTGTTATAGAAACAAATGAAGGGAAACATAAAAA---G-TAAAGGTA-TGGCCAGTGTGTGTGTGTGTGTTTGTGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTAGGAAACAATAATTACACAACTACTAGTCTCGTACTAAGCTACATATCGTAGGATCACTTGTAGATTTCGGTTATAATTTCAAATATTAAAAAGGTATTGATAAT-ATAAT-AGACAGCACGTTGAGACAATTCTTCAAATGAGTGACTGAAGTGAACAAAACATAAACTTGTAGATTTCGGTCCTAATTTCAAAAACTAAAAATGTATTGATGATAACAGACANCACGTCAANGCA--A-TGT--C--AAATGATGAAGCA--CGA--------AGTGAACAAAACAGAAACTTGTTATAAAAGCATATTTGGAGAATCC-GGGTATCGAT-CCCGGTACC--TCTCACATGCTA--AGCGAGCGCTCTACC--ACTTGAGCTAATT-CCC---C-ATCCCGTTGTAGTAAAAC---ATNAANAC-TACGATGATGATATC-A-GTTCAGCAATCGAAT--ATTAA-G-----NTNTTTCTGTTTCCATCTCAGGAAANCNAGAATCGATTAAAATAATAGAAAATGTCA-ATTT-TGCAATAAAACNGGTATACTCTCTTTTAATAGATCTTGAATNAAAAGTTAT-TGGCCA--GTATGG------------C-------------T----ATTTGCGTTATTAGCACGACGCTCTAAGCGACTGA--GCT-ACGCGGCCATTTCGTTCTA-TGATT--TATTTCGTATGAT--C-A--CTT--GT---ACATTGAAATGTTATAAATGTATTGATAATAATAGACAGCACGTTGAAGCAAATTTCAAAT-AATAAAGCACGAATGATTAAAGTGAACANAACAGAAACCTGTTGTAAAAATATAGCTGGAGAATCCGGGTATCGATACCGGTACC--TTTCACATGCTCTATCACTTGAGCTAATTCCTTTTCCCATTAGTAGTATGTTCCAGATATTAAGAAGTTATTAATAAATATAGACAGTCCGGAGAGTCTCACAAGATGAAGCACGAGTGATTGAGATGAAT
Reference ( family-8913 ) : GATAGATTGGCCTACCAATGGCGTGATTTGCAATACATGTGTTATAGAAACAAATGAAGGGAAACATAAAAA---G-TAAAGGTA-TGGCCAGTGTGTGTGTGTGTGTTTGTGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTAGGAAACAATAATTACACAACTACTAGTCTCGTACTAAGCTACATATCGTAGGATCACTTGTAGATTTCGGTTATAATTTCAAATATTAAAAAGGTATTGATAAT-ATAAT-AGACAGCACGTTGAGACAATTCTTCAAATGAGTGACTGAAGTGAACAAAACATAAACTTGTAGATTTCGGTCCTAATTTCAAAAACTAAAAATGTATTGATGATAACAGACANCACGTCAANGCA--A-TGT--C--AAATGATGAAGCA--CGA--------AGTGAACAAAACAGAAACTTGTTATAAAAGCATATTTGGAGAATCC-GGGTATCGAT-CCCGGTACC--TCTCACATGCTA--AGCGAGCGCTCTACC--ACTTGAGCTAATT-CCC---C-ATCCCGTTGTAGTAAAAC---ATNAANAC-TACGATGATGATATC-A-GTTCAGCAATCGAAT--ATTAA-G-----NTNTTTCTGTTTCCATCTCAGGAAANCNAGAATCGATTAAAATAATAGAAAATGTCA-ATTT-TGCAATAAAACNGGTATACTCTCTTTTAATAGATCTTGAATNAAAAGTTAT-TGGCCA--GTATGG------------C-------------T----ATTTGCGTTATTAGCACGACGCTCTAAGCGACTGA--GCT-ACGCGGCCATTTCGTTCTA-TGATT--TATTTCGTATGAT--C-A--CTT--GT---ACATTGAAATGTTATAAATGTATTGATAATAATAGACAGCACGTTGAAGCAAATTTCAAAT-AATAAAGCACGAATGATTAAAGTGAACANAACAGAAACCTGTTGTAAAAATATAGCTGGAGAATCCGGGTATCGATACCGGTACC--TTTCACATGCTCTATCACTTGAGCTAATTCCTTTTCCCATTAGTAGTATGTTCCAGATATTAAGAAGTTATTAATAAATATAGACAGTCCGGAGAGTCTCACAAGATGAAGCACGAGTGATTGAGATGAAT
gi|1 : GATAGACTGGTTTACCAATGGCGTGATTTGCAATACATGTGTTATAGAAAAAATTGAAGGGAAACATAAAAA---A-TATGAGTA-TGGCCAGTGTGTGTGTGTGTGTTTGTGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTAGGAAACAATAATTACATAACTACTAGTCTCGTACTAAGCTTCACATCGTAGGATCACTTGTAGATTTCGGTTATAATTGTAAATATTAAAAAGGTATTGATAATTATAAT-AGACAGCACGTTGAGACAATTCTTCAAATGAGTGACTGAAGTGAACAAAACATAAACTTGTAGATTTCGGTCCTAATTTCCAAAACTAAAAATGTATTGATGATAACAGCCATCATGTCAAAA-A--A-TGT--C--AAATTATGAAACA--CAA--------AGTAAACAAACCAGAAACTTGTTATAAAAGCATATTTGGAGAATCC-GTGTATCGAT-CCCGGTACC--TCTCATATGCTA--AGTGATCGCTCTACC--ACTTTAGCTAAAT-CCC---TGATCCCATTGTA-TAAAAC---ATTAAGAC-TACGATAGTGATAT-----TTCAGCAATCGAAT--ATTAA-G-----ATATTTCTGTTTCCATTTCAGGAAACCCAGAATCGGTTAAAATAACAGCAACTGTCA-ATTT-TGCAATAAAACAAGTATACT-TCTTTTAATAGATCTTGAATAAAAAGTTAT-TAGCCA--GTATGG------------C-------------T----ATTTGCGTTATTAGCACGACGCTCTAAGCGACTAA--GCT-ACGCGGCCATTTCGTTCTA-TGATT--TATTTCGTATGAT--C-A--CTT--GT---ACATTGAAATGTTATAAATGTATTGATAATAATAAACAGCATGTTGAAGTAAATTTCAAAT-AATAAAGCACGAATGATTAAAGTGAACATAACAGAAACCTGTTGTAAAAATATAGCTGGAGAATCCGGGTATCGATACTGGTACC--TTTCACATGCTCTATCACTTGAGCTAATTCCTTTTCCCATTAGTAGTATGTTCCAGATATTAAGAAGTTATTAATAAATATAGACAGTCCGGAGAGTCTCACAAGATGAAGCACGAGTGATTGAGATGAAT
gi|10 : TAACTGACAGCACGTCAACTTA--A-TAT--CTCAAATGATGAAGCA-----------------AACAAAACATAAAATTGTCATAAAAGCNNNNNNNNNNNNNNN-NNNNNNNNNN-NNNNNNNNN--NNNNNNNNNNNN--NNNNNNNNNNNNNNN--NNNNNNNNNNNNN-NNN---N-NNNNNNNNNNNNNNNNNN---NNNNNNNN-NACGACAATAATATC-AAGTTCAGCAATCAAAT---TTAATT-----TTTTTTCTGTTTCCATCTGAGAAAAATAAGAAATTATTAAA--AATAGAAAATGTCA-CTTTCTG-AATGCAAATGGCATATTCTCTTTCGTCAAATTGTGAATTAAAA--TATATGGCAA--G
gi|11 : ATGTATTGATAATAATAGACAGCATGTTGAGGCA--AATTT--C--AAATAATAAAGCA--CGAGTGATTCAAGTGAACAAAACAGAAACATGT-GTNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNN-NNNNNNNNN--NNNNNNNNNNNN--NNNNNNNNNNNNNNN--NNNNNNNNNNNTT-CCC---C-ATTCCGTCGTAGTAAAATATAATTAATAT-GATGATGATGATATCAA-GTTCAGCAATCGAGT--TTTAA-GT----TTTTTTCTGTTTCCATCTCAGAAAAACAAGAATC
gi|12 : GGTATATT-TCTTTTAATAGATCTTGAATAAAACGTTAT-TAGCCA--GTATGG------------C-------------T----ATTTGCGTTATTAGCACGACGCTCTAAGCGACTTACGGCT-ATGCGGCCATTTCGTTCTA-AGCTT--TATTTCGTACGATAAC-AGTCTT--GT---ACATTGAAATATTATGAATGTATTGATAATAATAGACAGCATGTTGAGGCAAATTTCAAAT-AATAAAGCACGAGTGATTCAAGTGAACAAAACAGAAACATGT
gi|13 : caaGCTAATT-CCC---C-ATTGCGTCGTAGTAAAAC---AT-AACACATACGACAATAATATCAA-GTTCAGCAATCAAAT---TTAA-GTGTTTTTTTTTCTGTTTCCATCTCAGATAAACAAGATACTATTAAA--AATAGAAAATGTCA-CTTT-TTGAATAAAACTGGCATATTCTTTT
gi|14 : GATAGATTGGCCTACCAATGACATAATTTGCAATACATGTGTTATAGAAACAAATGAAGGGAAACATAAAAAT--G-CAAAAGTACTGGCCAGTGTG
gi|15 : GATAGATTGGCCTACCAATGACATAATTTGTAATACATGTGTTATAGAAACAAATGAAGGGAAACATAAAAAG--G-CAAAGGTA-TTGCCAGTAT
gi|16 : aATAGATTGGCCTACCAATGACATAATTTGTAATACATGTGTTATAGAAACATATGAAAACAAACATAAAAA---GACAAAGGTA-TTGCCAGTAT
gi|17 : aaATAGATTGGCCTACCAATGAC-TGATTTGCAATACATGTGCTATAGAAAAAAATGAAAAGAAACATAAAAAATTG-TAAAAGTA-TGGCCAGTGTG
gi|18 : AACAGACAGCACGTCAATGTAGTA-TCT--C--AAATGATGAAGCA-----------------AACAAAACATAAACTTG
gi|2 : GATAGACTGGTTTACCAATGGCGTGATTTGCAATACATGTGTTATAGAAAAAATTGAAGGGAAACATAAAAA---A-TATGAGTA-TGGCCAGTGTGTGTGTGTGTGTTTGTGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTAGGAAACAATAATTACATAACTACTAGTCTCGTACTAAGCTTCACATCGTAGGATCACTTGTAGATTTCGGTTATAATTGTAAATATTAAAAAGGTATTGATAATTATAAT-AGACAGCACGTTGAGACAATTCTTCAAATGAGTGACTGAAGTGAACAAAACATAAACTTGTAGATTTCGGTCCTAATTTCCAAAACTAAAAATGTATTGATGATAACAGCCATCATGTCAAAA-A--A-TGT--C--AAATTATGAAACA--CAA--------AGTAAACAAACCAGAAACTTGTTATAAAAGCATATTTGGAGAATCC-GTGTATCGAT-CCCGGTACC--TCTCATATGCTA--AGTGATCGCTCTACC--ACTTTAGCTAAAT-CCC---TGATCCCATTGTA-TAAAAC---ATTAAGAC-TACGATAGTGATAT-----TTCAGCAATCGAAT--ATTAA-G-----ATATTTCTGTTTCCATTTCAGGAAACCCAGAATCGGTTAAAATAACAGCAACTGTCA-ATTT-TGCAATAAAACAAGTATACT-TCTTTTAATAGATCTTGAATAAAAAGTTAT-TAGCCA--GTATGG------------C-------------T----ATTTGCGTTATTAGCACGACGCTCTAAGCGACTAA--GCT-ACGCGGCCATTTCGTTCTA-TGATT--TATTTCGTATGAT--C-A--CTT--GT---ACATTGAAATGTTATAAATGTATTGATAATAATAAACAGCATGTTGAAGTAAATTTCAAAT-AATAAAGCACGAATGATTAAAGTGAACATAACAGAAACCTGTTGTAAAAATATAGCTGGAGAATCCGGGTATCGATACTGGTACC--TTTCACATGCTCTATCACTTGAGCTAATTCCTTTTCCCATTAGTAGTATGTTCCAGATATTAAGAAGTTATTAATAAATATAGACAGTCCGGAGAGTCTCACAAGATGAAGCACGAGTGATTGAGATGAAT
gi|3 : ATTGGTTGACCTACTA-TGGCGTGATTTGCAATACATGTGTTATAAATACAAATGAAGTGAAACATAAAAAT--G-TAACGTTA-TGGCCAGTGTG
gi|3 : gataatAATGTAACGTTAT--GGCCA--GTGTGGGGGTCGTACCCACGA-----------C----ATTTGCATTATTAGCACAACGCACTAACCGACTGA--GTT-AACCGACCATggggtcgtacccacgacatttgcattattagcacaacgcactaaccgactgagttaaccgaccatgtggcaaagtatgatattacaacattaggaaacaataattacacaactactagtctcgtactacgctacgtatcgtagaatcactagtggatttcggttattagttaaaatattaaaaaggtattaataataatagacagcacgttgagacaattcttcaaatgagtgactgaagtgaacaaaacataaacttgtagatttcggtcttaatttcagaaataaaaaatgtattgatgataacagacatcatggcaagacaatgtgacaaatgaagaaacatttgaagtgaacagaccagaaacttgttataaaagcctttttggagaatccgggtattgatcccggtacctctcacatgcttagggagcgctctaccacttgagctaattcccccgttctacgatgatgatttttcagcaatcaaatattaaggcatttctgtttttatctcaggaaatccaggatcgattaaaataacaccaactgtcaattttgcaataaaacaattatacttcttttaatagatcttgaataaaaagttattagccagtatggctatttgcgttattagcacgacgctctaagcgactaacggctatgcggccatttagttctatgctttatttcgtatgatcacttgtacat
gi|3 : gataatattggttgacctactatggcgtgatttgcaatacatgtgttataaatacaaatgaagtgaaacataaaCATTAGGAAACAATAATTACACAACTACTAGTCTCGTACTACGCTACGTATCGTAGAATCACTAGTGGATTTCGGTTATTAGTTAAAATATTAAAAAGGTATTAATAAT-A--AT-AGACAGCACGTTGAGACAATTCTTCAAATGAGTGACTGAAGTGAACAAAACATAAACTTGTAGATTTCGGTCTTAATTTCAGAAATAAAAAATGTATTGATGATAACAGACATCATGGCAAGACA--A-TGTGAC--AAATGAAGAAACATTTGA--------AGTGAACAGACCAGAAACTTGTTATAAAAGCCTTTTTGGAGAATCC-GGGTATTGAT-CCCGGTACC--TCTCACATGCTT--AGGGAGCGCTCTACC--ACTTGAGCTAATT-CC--------CCCGTT--------------------C-TACGATGATGATTT-----TTCAGCAATCAAAT--ATTAA-G-----GCATTTCTGTTTTTATCTCAGGAAATCCAGGATCGATTAAAATAACACCAACTGTCA-ATTT-TGCAATAAAACAATTATACT-TCTTTTAATAGATCTTGAATAAAAAGTTAT-TAGCCA--GTATGG------------C-------------T----ATTTGCGTTATTAGCACGACGCTCTAAGCGACTAACGGCT-ATGCGGCCATTTAGTTCTA-TGCTT--TATTTCGTATGAT--C-A--CTT--GT---ACATgtggcaaagtatgatattacaacattaggaaacaataattacacaactactagtctcgtactacgctacgtatcgtagaatcactagtggatttcggttattagttaaaatattaaaaaggtattaataataatagacagcacgttgagacaattcttcaaatgagtgactgaagtgaacaaaacataaacttgtagatttcggtcttaatttcagaaataaaaaatgtattgatgataacagacatcatggcaagacaatgtgacaaatgaagaaacatttgaagtgaacagaccagaaacttgttataaaagcctttttggagaatccgggtattgatcccggtacctctcacatgcttagggagcgctctaccacttgagctaattcccccgttctacgatgatgatttttcagcaatcaaatattaaggcatttctgtttttatctcaggaaatccaggatcgattaaaataacaccaactgtcaattttgcaataaaacaattatacttcttttaatagatcttgaataaaaagttattagccagtatggctatttgcgttattagcacgacgctctaagcgactaacggctatgcggccatttagttctatgctttatttcgtatgatcacttgtacat
gi|4 : gataatattggttgacctactatggcgtgatttgcaatacatgtgttataaatacaaatgaagtgaaacataaaaatgtaacgttatggccagtgtgggggtcgtacccacgacatttgcattattagcacaacgcactaaccgactgagttaaccgaccatgtggcaaagtatgatattacaaTGGCCTACCA-TGGCGTG-TTTGCAATGCATGTGTTATAAATTCAAATGAAGGGAAACTTAAAAA---
gi|4 : gattgggCATTAGGAAACAATAATTACACAACTACTAGTCTCGTACTAAGCTACATATCGTAGAATCACTTGTTGATTTCGGTTATAATTTCAAATATTAAAAAGATATTAATAAT-A--GT-AGACAGCACGTGGAGACAATTCTTCAAGTGAGTGACTGAAGTGAACAAAACATAAACTTGTAGATTTCGGTTCTAATTTCAAAAAATAAAAATGTATTGATGACAACAGACATCATGTCAAAACA--A-TGT--C--AAATGATGAAACA--TGA--------AGAAAACAAACCAGAAACTTGTTATAAAAGCATACTTGGAGAATCC-GGGTATCGAT-CCCGGTACC--TCTCACATGCTA--AGCGAGCGCTCTACC--ACTTGAGCTAATTCCCC---C-ATCCCTTTGCA-TAAAAC---ATAAAGAC-TACAATGCTGATAT-----TTCAGCAATTGATT--ATTAA-G-----GTATTTTTGTTTCAA--TTAGGAtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcacgtggcaaagtatgatattacaacattaggaaacaataattacacaactactagtctcgtactaagctacatatcgtagaatcacttgttgatttcggttataatttcaaatattaaaaagatattaataatagtagacagcacgtggagacaattcttcaagtgagtgactgaagtgaacaaaacataaacttgtagatttcggttctaatttcaaaaaataaaaatgtattgatgacaacagacatcatgtcaaaacaatgtcaaatgatgaaacatgaagaaaacaaaccagaaacttgttataaaagcatacttggagaatccgggtatcgatcccggtacctctcacatgctaagcgagcgctctaccacttgagctaattcccccatccctttgcataaaacataaagactacaatgctgatatttcagcaattgattattaaggtatttttgtttcaattaggaccgaaatc
gi|4 : gattgggtggcctaccatggcgtgtttgcaatgcatgtgttataaattcaaatgaagggaaacttaaaaatgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcacgtggcaaagtatgatattacaaGATTTCGGTCCTAATT---GAAAC-AAAAATACCTTAATAATccgaaatc
gi|5 : gattgggtggcctaccatggcgtgtttgcaatgcatgtgttataaattcaaatgaagggaaacttaaaaatgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcacgtggcaaagtatgatattacaacattaggaaacaataattacacaactactagtctcgtactaagctacatatcgtagaatcacttgttgatttcggttataatttcaaatattaaaaagatattaataatagtagacagcacgtggagacaattcttcaagtgagtgactgaagtgaacaaaacataaacttgtagatttcggttctaatttcaaaaaataaaaatgtattgatgacaacagacatcatgtcaaaacaatgtcaaatgatgaaacatgaagaaaacaaaccagaaacttgttataaaagcatacttggagaatccgggtatcgatcccggtacctctcacatgctaagcgagcgctctaccacttgagctaattcccccatccctttgcataaaacataaagactacaatgctgatatttcagcaattgTAACTGACAGCACGTCAATGTA--A-TAT--CTCACATGATGAAGCA-----------------AACAAAACATAAACTTGTCATAAAAGCAAATTTGGAGAATCC-GGGTATCGAT-CCCGGTACC--TCTCACATGCTA--AGCGAGCGTTCTACC--ACTTGAGCTAATT-CCC---C-ATTTCGTCGTAGTAAAAC---ATAAACAA-TACGATAATGATAACAA-GTTCAGCAATCAAATTGATT---------TTTTTTCTGTTTCCATCTCAGATAAACAAGAAACTATTAAA--AATAGAGAATGTCA-TTTT-TTGAATAAAACTTGCATATTCTCTTTTGTCAGATTGTGAATTAAAATATAT-TG
gi|5 : AGGTATGGCCAAT-G-----AGACAGCACGTTGAAACAATTCTTCAAATGAGTGACTGTAGTGAACAAAACATAAACTTGcaattgtagatgtcgaacacaagatatttgcgtagccgaacatattctagaaatttgtatttcatcaaatagtgatacaataatgatgattgagataagattgattggactaccatgttcaggtatggccaatgagacagcacgttgaaacaattcttcaaatgagtgactgtagtgaacaaaacataaacttg
gi|6 : taactgacagcacgtcaatgtaatatctcacatgatgaagcaaacaaaacataaacttgtcataaaagcaaatttggagaatccgggtatcgatcccggtacctctcacatgctaagcgagcgttctaccacttgagctaattccccatttcgtcgtagtaaaacataaacaatacgataatgataacaagttcagcaatcaaattgattttttttctgtttccatctcagataaacaagaaactattaaaaatagagaatgtcattttttgaataaaacttgcatattctcttttgtcagattgtgaattaaaatatattgcaattgtagatgtcgaacacaagatatttgcgtagccgaacatattctagaaatttgtatttcatcaaatagtgatacaataatgatgattgagataagattgattggactaccatgttcAATGAGACAGCACGTTGAAACAATTCTTCAAATGAGTGACTGTAGTGAACAAAACATAAACTTGTAGATTTCGGTCTTAATTTCAAAAAATAAAAATGTATTGATGATAACAGACATCATGTCAAGACA--A-TGTCAC--AAATGATGAAACATTTGA--------AGTGAACAGACTAGAAACTTGTTATAAAAGCCTTTTTGGAGAATCC-GGGTATTGAT-CCCGGTACA--TCTCAAATGCTA--AGCGAGCGCTCTACC--ACTTGAGTTAAGT-CCCT--C-ATCCCTATGTATTAACTC---ATTAAGAC-TACGATAGTGATAT-----TTCAGCAATCGAAT--ATTTA-G-----ATA-TTCTGTTTCCATTTCAGGAAACCTAGAATCGGTAAAAATAATAGAAAATGTCA-ATTT-TGCAATAAAACAGATATACT-TCTTTTAATAGATCTTGAATAAAAAGTTAT-TGGCCA--GTATGG------------C-------------T----ATTTACGTTATTAGCACGACGCAGTAAGTGACTAA--GCA-ATGCGGCCATTTCGTTCTA-AGCTT--TAT
gi|7 : TTAAGGCA--A-TTTT-C--AACTAATTAAGCA--CGATAATTA--AGTGAACAAAACAGAAACCTGTTGTATAAATACAGTTGGAGAATCC-TGGTATCGAT-CTCGGTACT--TCTCACATGCTA--ATCGAGCGCTCTACC--ACTTGAGCTAATT-CCC---T-ATTCAGTTGTAGTAAAAT---ATAATTAA-TACGCTGATGACATCGA-GTTCAGCAATCGAAT--TTTAA-G-----GCTTTTCTGTTTCCATCT-----------------ATTAAAA-AATAG-AAATGCCACATTT-T-TAATAAAACTCGGATAATCCCTTTTGCCAGATTGTGAATTAAAA--TATATGGCAATTGTA-GA------------CATCGAAAACAAGAT----ATTCGCGTTATTGATAAGACACCCTAACCGACTGA--GCT-AGCCGGACAT---ATTCTAGTAATTTGTATTTC
gi|8 : taGATTGGTTGGCCTACCA-TGGCGTG-TTTGCAATGCATGTGTTATAAATTCAAATGAAGGGAAACTTAAAAAT--G-TAAAGGTA-TGGCCAGTGTGa
gi|8 : agataaAATGTAAAGGTAT--GGCCA--GTGTGGACGGTGGAACC-C-------------TCGACATTCGTGTTATTAGTACAACGCTCTAACAGACTGT--GCT-AACCGACCATgacggtggaaccctcgacattcgtgttattagtacaacgctctaacagactgtgctaaccgaccatgtggcaaagtatgatattacaacattaggaaacagtaattacacaactactagtctcgtactacgctacatatcgtaggatcacttgtagatttcggttataatttcaaatattaaaaagatattaataataatagacagcacgtggagacaattcttcaagtgagtgactgaagtgaacaaaacataaacttgtagatttcggtcctaattgaaacaaaaataccttaataa
gi|8 : agataagattggttggcctaccatggcgtgtttgcaatgcatgtgttataaattcaaatgaagggaaacttaaaCATTAGGAAACAGTAATTACACAACTACTAGTCTCGTACTACGCTACATATCGTAGGATCACTTGTAGATTTCGGTTATAATTTCAAATATTAAAAAGATATTAATA---ATAAT-AGACAGCACGTGGAGACAATTCTTCAAGTGAGTGACTGAAGTGAACAAAACATAAACTTGTAGATTTCGGTCCTAATT---GAAAC-AAAAATACCTTAATAAgtggcaaagtatgatattacaacattaggaaacagtaattacacaactactagtctcgtactacgctacatatcgtaggatcacttgtagatttcggttataatttcaaatattaaaaagatattaataataatagacagcacgtggagacaattcttcaagtgagtgactgaagtgaacaaaacataaacttgtagatttcggtcctaattgaaacaaaaataccttaataa
gi|9 : agataagattggttggcctaccatggcgtgtttgcaatgcatgtgttataaattcaaatgaagggaaacttaaaaatgtaaaggtatggccagtgtggacggtggaaccctcgacattcgtgttattagtacaacgctctaacagactgtgctaaccgaccatgtggcaaagtatgatattacaaTTTGGTAAATTTTGGATATCGATTCCCGGTTCC--TCTCACATGCTA--AGCGAGTGCTCTACC--ACTTGAGCTAATT-CCC---C-ATTCCCTTGTAGTAAAAC---ATAATTAA-TACGATGATGATATC-A-
gi|9 : atTATCATGACA---TAACCGACTGA--GCTTAC-CGGCTATTTCGTAGTAGTGATC---ATTC----TGGT--CCA--TTTTAGTCTTAATTTCAAATATTAAAAAGTTATTAATAATAATAGACAGCACATTAATGCAA-TTTC---TCAAT----------TGAT-AAAGTAAACAAAACATACTCTTGTTATAAAAGGATACTTTGAGAATCCGGGTACCGATCCCTGTACCCGTCTCACATtgacataaccgactgagcttaccggctatttcgtagtagtgatcattctggtccattttagtcttaatttcaaatattaaaaagttattaataataatagacagcacattaatgcaatttctcaattgataaagtaaacaaaacatactcttgttataaaaggatactttgagaatccgggtaccgatccctgtacccgtctcacatattattacgacgccctaacagactgagctaaccggacattttgtagtaatttgtatttcat
gi|9 : attttggtaaattttggatatcgattcccggttcctctcacatgctaagcgagtgctctaccacttgagctaattccccattcccttgtagtaaaacataattaatacgatgatgaATTTTAGTCTTAATTTCAAATATTAAAAAGTTATTAATAATAATAGACAGCACATTAATGCA--A-TTT--CTCAATTGATAAAGTA-----------------AACAAAACATACTCTTGTTATAAAAGGATACTTTGAGAATCC-GGGTACCGAT-CCCTGTACCCGTCTCACATATTATTA-CGA-CGCCCTAACAGAC-TGAGCTAA----CCGGAC-ATT---TTGTAGTAAattattacgacgccctaacagactgagctaaccggacattttgtagtaatttgtatttcat
blockSeqs : A A ATT A C NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN T GT TATA G T C CT G CTT GT A A CTC CGAGTGATTCAAGTG A T T CG TT N AG N C GGAC N N ATA N N A CAAG TGA T TGTTTT T A A A T AT A CA C TG TG C T GT AT TT ACGGTGGAACCCTCGAC T G CG T TG G C TG AA C GT TA CTT T G A A C A T A CG
blockSeqs : A A T . . A TA ATA . T A TA G GGC . . T GAC CGATAATTAAGTG A . . . . N . T . TG G G . T T . CAAG T . TT T A A T T AT A C . GC TG C A GT AT . GGGTCGTACCCACGAC T G CG . CG G A . . . . . . T A A A . A T T .
blockSeqs : A A G . . A TC A . T A AT G TGT . . C CTC TTTGAAGTG A . . . . T . T . TC G G . T C . CAAG A . T T A A A G AT C C . GC AA C A GT T . CATCGAAAACAAGAT A C . . AC . C . . . . . . C T . . . . . A
blockSeqs : A A T . . A TC A . T A AT T GAC . . G CAC TTTGAAGTG C . . . . G . A . N A G . A G . CAAG A . A A C C T G A C A . TG AA C G GT T . CT T G . . TG . C . . . . . .
blockSeqs : A A T . . G . T A TT T AAC . . G CTC CAAAGTA C . . . . G . T . C G T . A G . CGAG A . G A T C T T . A A . GC TT . A TA T . CT A G . . TG . A .
blockSeqs : . A . . . . . . C T TGT . . G TC TGAAGAA C . . . . G . T . C T G . T C . . A . G A A A A G . A T . G AG . T GT T . CT C C . . GC . A .
blockSeqs : . . . . . . . C G GAC . . A C . A . . . . G . T . C G G . A G . . T . T T C T T . . . A . T TC . A GG T . CT T C . . AC
blockSeqs : . . . T GGC . . G C . C . . . . G . G . C T G . A T . . . . A A . . . . T . . . . C . . C
blockSeqs : G TGC . . T C . A . . . . G . T . T G . . . T . . . . G T G . .
blockSeqs : AA . . T C . A . . . . . . T . C C . . . . .
blockSeqs : . . . . .
blockSeqCons : T** A*** NGC C**** CAAGTG*********** C**** CAAG* A*
originalCons : GATAGATTGGCCTACCAATGGCGTGATTTGCAATACATGTGTTATAGAAACAAATGAAGGGAAACATAAAAA---G-TAAAGGTA-TGGCCAGTGTGTGTGTGTGTGTTTGTGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTAGGAAACAATAATTACACAACTACTAGTCTCGTACTAAGCTACATATCGTAGGATCACTTGTAGATTTCGGTTATAATTTCAAATATTAAAAAGGTATTGATAAT-ATAAT-AGACAGCACGTTGAGACAATTCTTCAAATGAGTGACTGAAGTGAACAAAACATAAACTTGTAGATTTCGGTCCTAATTTCAAAAACTAAAAATGTATTGATGATAACAGACANCACGTCAANGCA--A-TGT--C--AAATGATGAAGCA--CGA--------AGTGAACAAAACAGAAACTTGTTATAAAAGCATATTTGGAGAATCC-GGGTATCGAT-CCCGGTACC--TCTCACATGCTA--AGCGAGCGCTCTACC--ACTTGAGCTAATT-CCC---C-ATCCCGTTGTAGTAAAAC---ATNAANAC-TACGATGATGATATC-A-GTTCAGCAATCGAAT--ATTAA-G-----NTNTTTCTGTTTCCATCTCAGGAAANCNAGAATCGATTAAAATAATAGAAAATGTCA-ATTT-TGCAATAAAACNGGTATACTCTCTTTTAATAGATCTTGAATNAAAAGTTAT-TGGCCA--GTATGG------------C-------------T----ATTTGCGTTATTAGCACGACGCTCTAAGCGACTGA--GCT-ACGCGGCCATTTCGTTCTA-TGATT--TATTTCGTATGAT--C-A--CTT--GT---ACATTGAAATGTTATAAATGTATTGATAATAATAGACAGCACGTTGAAGCAAATTTCAAAT-AATAAAGCACGAATGATTAAAGTGAACANAACAGAAACCTGTTGTAAAAATATAGCTGGAGAATCCGGGTATCGATACCGGTACC--TTTCACATGCTCTATCACTTGAGCTAATTCCTTTTCCCATTAGTAGTATGTTCCAGATATTAAGAAGTTATTAATAAATATAGACAGTCCGGAGAGTCTCACAAGATGAAGCACGAGTGATTGAGATGAAT
finalCons : GATAGATTGGCCTACCAATGGCGTGATTTGCAATACATGTGTTATAGAAACAAATGAAGGGAAACATAAAAAT--G-TAAAGGTA-TGGCCAGTGTGTGTGTGTGTGTTTGTGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTAGGAAACAATAATTACACAACTACTAGTCTCGTACTAAGCTACATATCGTAGGATCACTTGTAGATTTCGGTTATAATTTCAAATATTAAAAAGGTATTGATAATA---AT-AGACAGCACGTTGAGACAATTCTTCAAATGAGTGACTGAAGTGAACAAAACATAAACTTGTAGATTTCGGTCCTAATTTCAAAAACTAAAAATGTATTGATGATAACAGACANCACGTCAANGCA--A-TGTC----AAATGATGAAGCACAAGTG-----------AACAAAACAGAAACTTGTTATAAAAGCATATTTGGAGAATCC-GGGTATCGAT-CCCGGTACC--TCTCACATGCTA--AGCGAGCGCTCTACC--ACTTGAGCTAATT-CCCC----ATCCCGTTGTAGTAAAAC---ATNAANAC-TACGATGATGATATCAAG-TTCAGCAATCGAAT--ATTAA-G-----NTNTTTCTGTTTCCATCTCAGGAAANCNAGAATCGATTAAAA-AATAGAAAATGTCA-ATTT-TGCAATAAAACNGGTATACTCTCTTTTAATAGATCTTGAATNAAAAGTTAT-TGGCCA--GTATGG------------C-------------T----ATTTGCGTTATTAGCACGACGCTCTAAGCGACTGA--GCT-ACGCGGCCATTTCGTTCTA-TGATT--TATTTCGTATGAT--C-A--CTT--GT---ACATTGAAATGTTATAAATGTATTGATAATAATAGACAGCACGTTGAAGCAAATTTCAAAT-AATAAAGCACGAATGATTAAAGTGAACANAACAGAAACCTGTTGTAAAAATATAGCTGGAGAATCCGGGTATCGATACCGGTACC--TTTCACATGCTCTATCACTTGAGCTAATTCCTTTTCCCATTAGTAGTATGTTCCAGATATTAAGAAGTTATTAATAAATATAGACAGTCCGGAGAGTCTCACAAGATGAAGCACGAGTGATTGAGATGAAT
Alignments
lowQualScore : 11 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 222 11111 6666666666666666 11111 2222 111 111111 111 2 1 7777777777777777777777777777777 11 1 11 11 11 111 1 11
lowQualScore : 7 0 1 55 66 5 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 1 22 000 5 3 3 66 1 444 55 3 2 88888 6666666666666666 1 3 3 55 55 1 55 2 3 22222 1 7 5 77777 3 1111 111 555555 1 4 2 2 4 2 000 0 6 55 5 77 11 7 0 1 33 88 66 7777777777777777777777777777777 1 1 22 4 77 1 1 77 11 8 11 11 444 2 1 3 3 0 3 0 3 1 0 0 88
lowQualScore : . . . .. .. . .............................................................................................. . . .. ... . . . .. . ... .. . . ..... ................ . . . .. .. . .. . . ..... . . . ..... . .... ... ...... . . . . . . ... . . .. . .. .. . . . .. .. .. ............................... . . .. . .. . . .. .. . .. .. ... . . . . . . . . . . . ..
lowQualScore : 3 9 9 00 55 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 6 4 00 000 7 2 0 88 0 000 00 6 0 66666 6666666666666666 9 6 6 00 00 1 00 2 3 88888 9 6 8 55555 6 5555 555 000000 0 0 6 6 9 5 111 0 1 22 0 00 99 8 5 0 33 88 11 2222222222222222222222222222222 1 1 22 4 66 4 3 99 00 0 00 00 000 0 2 2 2 0 2 8 2 0 2 7 33
consensus : GATAGATTGGCCTACCAATGGCGTGATTTGCAATACATGTGTTATAGAAACAAATGAAGGGAAACATAAAAA--TGTAAAGGTA-TGGCCAGTGTGTGTGTGTGTGTTTGTGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTAGGAAACAATAATTACACAACTACTAGTCTCGTACTAAGCTACATATCGTAGGATCACTTGTAGATTTCGGTTATAATTTCAAATATTAAAAAGGTATTGATAAT---AAT-AGACAGCACGTTGAGACAATTCTTCAAATGAGTGACTGAAGTGAACAAAACATAAACTTGTAGATTTCGGTCCTAATTTCAAAAACTAAAAATGTATTGATGATAACAGACANCACGTCAANGCA--A-TGT--C--AAATGATGAAGCAC---------AA-GTGAACAAAACAGAAACTTGTTATAAAAGCATATTTGGAGAATCC-GGGTATCGAT-CCCGGTACC--TCTCACATGCTA--AGCGAGCGCTCTACC--ACTTGAGCTAATT-CCC---C-ATCCCGTTGTAGTAAAACATAA---ANAC-TACGATGATGATATCAAGTTCAGCAATCGAAT--ATTAAG-----NTNTTT-CTGTTTCCATCTCAGGAAANCNAGAATCGATTA--AAATAATAGAAAATGTCA-ATTT-TGCAATAAAACNGGTATACTCTCTTTTAATAGATCTTGAATNAAAAGTTAT-TGGCCA--GTATGG------------C-------------T----ATTTGCGTTATTAGCACGACGCTCTAAGCGACTGA--GCT-ACGCGGCCATTTCGTTCTA-TGATT--TATTTCGTATGAT--C-A--CTT--GT---ACATTGAAATGTTATAAATGTATTGATAATAATAGACAGCACGTTGAAGCAAATTTCAAAT-AATAAAGCACGAATGATTAAAGTGAACANAACAGAAACCTGTTGTAAAAATATAGCTGGAGAATCCGGGTATCGATACCGGTACC--TTTCACATGCTCTATCACTTGAGCTAATTCCTTTTCCCATTAGTAGTATGTTCCAGATATTAAGAAGTTATTAATAAATATAGACAGTCCGGAGAGTCTCACAAGATGAAGCACGAGTGATTGAGATGAAT
Reference ( family-8913 ) : GATAGATTGGCCTACCAATGGCGTGATTTGCAATACATGTGTTATAGAAACAAATGAAGGGAAACATAAAAA--TGTAAAGGTA-TGGCCAGTGTGTGTGTGTGTGTTTGTGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTAGGAAACAATAATTACACAACTACTAGTCTCGTACTAAGCTACATATCGTAGGATCACTTGTAGATTTCGGTTATAATTTCAAATATTAAAAAGGTATTGATAAT---AAT-AGACAGCACGTTGAGACAATTCTTCAAATGAGTGACTGAAGTGAACAAAACATAAACTTGTAGATTTCGGTCCTAATTTCAAAAACTAAAAATGTATTGATGATAACAGACANCACGTCAANGCA--A-TGT--C--AAATGATGAAGCAC---------AA-GTGAACAAAACAGAAACTTGTTATAAAAGCATATTTGGAGAATCC-GGGTATCGAT-CCCGGTACC--TCTCACATGCTA--AGCGAGCGCTCTACC--ACTTGAGCTAATT-CCC---C-ATCCCGTTGTAGTAAAACATNA---ANAC-TACGATGATGATATCAAGTTCAGCAATCGAAT--ATTAAG-----NTNTTT-CTGTTTCCATCTCAGGAAANCNAGAATCGATTA--AAA-AATAGAAAATGTCA-ATTT-TGCAATAAAACNGGTATACTCTCTTTTAATAGATCTTGAATNAAAAGTTAT-TGGCCA--GTATGG------------C-------------T----ATTTGCGTTATTAGCACGACGCTCTAAGCGACTGA--GCT-ACGCGGCCATTTCGTTCTA-TGATT--TATTTCGTATGAT--C-A--CTT--GT---ACATTGAAATGTTATAAATGTATTGATAATAATAGACAGCACGTTGAAGCAAATTTCAAAT-AATAAAGCACGAATGATTAAAGTGAACANAACAGAAACCTGTTGTAAAAATATAGCTGGAGAATCCGGGTATCGATACCGGTACC--TTTCACATGCTCTATCACTTGAGCTAATTCCTTTTCCCATTAGTAGTATGTTCCAGATATTAAGAAGTTATTAATAAATATAGACAGTCCGGAGAGTCTCACAAGATGAAGCACGAGTGATTGAGATGAAT
gi|1 : GATAGACTGGTTTACCAATGGCGTGATTTGCAATACATGTGTTATAGAAAAAATTGAAGGGAAACATAAAAAA-TATGA--GTA-TGGCCAGTGTGTGTGTGTGTGTTTGTGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTAGGAAACAATAATTACATAACTACTAGTCTCGTACTAAGCTTCACATCGTAGGATCACTTGTAGATTTCGGTTATAATTGTAAATATTAAAAAGGTATTGATAATTATAAT-AGACAGCACGTTGAGACAATTCTTCAAATGAGTGACTGAAGTGAACAAAACATAAACTTGTAGATTTCGGTCCTAATTTCCAAAACTAAAAATGTATTGATGATAACAGCCATCATGTCAAAA-A--A-TGT--C--AAATTATGAAACAC---------AAAGTAAACAAACCAGAAACTTGTTATAAAAGCATATTTGGAGAATCC-GTGTATCGAT-CCCGGTACC--TCTCATATGCTA--AGTGATCGCTCTACC--ACTTTAGCTAAAT-CCC---TGATCCCATTGTA-TAAAACATTA---AGAC-TACGATAGTGATAT----TTCAGCAATCGAAT--ATTAAG-----ATATTT-CTGTTTCCATTTCAGGAAACCCAGAATCGGTTA--AAATAACAGCAACTGTCA-ATTT-TGCAATAAAACAAGTATACT-TCTTTTAATAGATCTTGAATAAAAAGTTAT-TAGCCA--GTATGG------------C-------------T----ATTTGCGTTATTAGCACGACGCTCTAAGCGACTAA--GCT-ACGCGGCCATTTCGTTCTA-TGATT--TATTTCGTATGAT--C-A--CTT--GT---ACATTGAAATGTTATAAATGTATTGATAATAATAAACAGCATGTTGAAGTAAATTTCAAAT-AATAAAGCACGAATGATTAAAGTGAACATAACAGAAACCTGTTGTAAAAATATAGCTGGAGAATCCGGGTATCGATACTGGTACC--TTTCACATGCTCTATCACTTGAGCTAATTCCTTTTCCCATTAGTAGTATGTTCCAGATATTAAGAAGTTATTAATAAATATAGACAGTCCGGAGAGTCTCACAAGATGAAGCACGAGTGATTGAGATGAAT
gi|10 : TAACTGACAGCACGTCAACTTA--A-TAT--CTCAAATGATGAAGCA----------------AACAAAACATAAAATTGTCATAAAAGCNNNNNNNNNNNNNNN-NNNNNNNNNN-NNNNNNNNN--NNNNNNNNNNNN--NNNNNNNNNNNNNNN--NNNNNNNNNNNNN-NNN---N-NNNNNNNNNNNNNNNNNNNNNN---NNNN-NACGACAATAATATCAAGTTCAGCAATCAAAT---TTAAT-----TTTTTTTCTGTTTCCATCTGAGAAAAATAAGAA---ATTATTAAA-AATAGAAAATGTCA-CTTTCTG-AATGCAAATGGCATATTCTCTTTCGTCAAATTGTGAATTAAAA--TATATGGCAA--G
gi|11 : ATGTATTGATAATAATAGACAGCATGTTGAGGCA--AATTT--C--AAATAATAAAGCACGAGTGATTCAA-GTGAACAAAACAGAAACATGT-GTNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNN-NNNNNNNNN--NNNNNNNNNNNN--NNNNNNNNNNNNNNN--NNNNNNNNNNNTT-CCC---C-ATTCCGTCGTAGTAAAATATAATTAATAT-GATGATGATGATATCAAGTTCAGCAATCGAGT--TTTAAGT----TTTTTT-CTGTTTCCATCTCAGAAAAACAAGAATC
gi|12 : GGTATATT-TCTTTTAATAGATCTTGAATAAAACGTTAT-TAGCCA--GTATGG------------C-------------T----ATTTGCGTTATTAGCACGACGCTCTAAGCGACTTACGGCT-ATGCGGCCATTTCGTTCTA-AGCTT--TATTTCGTACGATAAC-AGTCTT--GT---ACATTGAAATATTATGAATGTATTGATAATAATAGACAGCATGTTGAGGCAAATTTCAAAT-AATAAAGCACGAGTGATTCAAGTGAACAAAACAGAAACATGT
gi|13 : caaGCTAATT-CCC---C-ATTGCGTCGTAGTAAAACAT-A---ACACATACGACAATAATATCAAGTTCAGCAATCAAAT---TTAAGTGTTTTTTTTT-CTGTTTCCATCTCAGATAAACAAGATACTATT---AAA-AATAGAAAATGTCA-CTTT-TTGAATAAAACTGGCATATTCTTTT
gi|14 : GATAGATTGGCCTACCAATGACATAATTTGCAATACATGTGTTATAGAAACAAATGAAGGGAAACATAAAAA--TGCAAAAGTACTGGCCAGTGTG
gi|15 : GATAGATTGGCCTACCAATGACATAATTTGTAATACATGTGTTATAGAAACAAATGAAGGGAAACATAAAAA--GGCAAAGGTA-TTGCCAGTAT
gi|16 : aATAGATTGGCCTACCAATGACATAATTTGTAATACATGTGTTATAGAAACATATGAAAACAAACATAAAAA--GACAAAGGTA-TTGCCAGTAT
gi|17 : aaATAGATTGGCCTACCAATGAC-TGATTTGCAATACATGTGCTATAGAAAAAAATGAAAAGAAACATAAAAAATTGTAAAAGTA-TGGCCAGTGTG
gi|18 : AACAGACAGCACGTCAATGTAGTA-TCT--C--AAATGATGAAGCA----------------AACAAAACATAAACTTG
gi|2 : GATAGACTGGTTTACCAATGGCGTGATTTGCAATACATGTGTTATAGAAAAAATTGAAGGGAAACATAAAAAA-TATGA--GTA-TGGCCAGTGTGTGTGTGTGTGTTTGTGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTAGGAAACAATAATTACATAACTACTAGTCTCGTACTAAGCTTCACATCGTAGGATCACTTGTAGATTTCGGTTATAATTGTAAATATTAAAAAGGTATTGATAATTATAAT-AGACAGCACGTTGAGACAATTCTTCAAATGAGTGACTGAAGTGAACAAAACATAAACTTGTAGATTTCGGTCCTAATTTCCAAAACTAAAAATGTATTGATGATAACAGCCATCATGTCAAAA-A--A-TGT--C--AAATTATGAAACAC---------AAAGTAAACAAACCAGAAACTTGTTATAAAAGCATATTTGGAGAATCC-GTGTATCGAT-CCCGGTACC--TCTCATATGCTA--AGTGATCGCTCTACC--ACTTTAGCTAAAT-CCC---TGATCCCATTGTA-TAAAACATTA---AGAC-TACGATAGTGATAT----TTCAGCAATCGAAT--ATTAAG-----ATATTT-CTGTTTCCATTTCAGGAAACCCAGAATCGGTTA--AAATAACAGCAACTGTCA-ATTT-TGCAATAAAACAAGTATACT-TCTTTTAATAGATCTTGAATAAAAAGTTAT-TAGCCA--GTATGG------------C-------------T----ATTTGCGTTATTAGCACGACGCTCTAAGCGACTAA--GCT-ACGCGGCCATTTCGTTCTA-TGATT--TATTTCGTATGAT--C-A--CTT--GT---ACATTGAAATGTTATAAATGTATTGATAATAATAAACAGCATGTTGAAGTAAATTTCAAAT-AATAAAGCACGAATGATTAAAGTGAACATAACAGAAACCTGTTGTAAAAATATAGCTGGAGAATCCGGGTATCGATACTGGTACC--TTTCACATGCTCTATCACTTGAGCTAATTCCTTTTCCCATTAGTAGTATGTTCCAGATATTAAGAAGTTATTAATAAATATAGACAGTCCGGAGAGTCTCACAAGATGAAGCACGAGTGATTGAGATGAAT
gi|3 : ATTGGTTGACCTACTA-TGGCGTGATTTGCAATACATGTGTTATAAATACAAATGAAGTGAAACATAAAAA--TGTAACGTTA-TGGCCAGTGTG
gi|3 : gataatAATGTAACGTTAT--GGCCA--GTGTGGGGGTCGTACCCACGA-----------C----ATTTGCATTATTAGCACAACGCACTAACCGACTGA--GTT-AACCGACCATggggtcgtacccacgacatttgcattattagcacaacgcactaaccgactgagttaaccgaccatgtggcaaagtatgatattacaacattaggaaacaataattacacaactactagtctcgtactacgctacgtatcgtagaatcactagtggatttcggttattagttaaaatattaaaaaggtattaataataatagacagcacgttgagacaattcttcaaatgagtgactgaagtgaacaaaacataaacttgtagatttcggtcttaatttcagaaataaaaaatgtattgatgataacagacatcatggcaagacaatgtgacaaatgaagaaacatttgaagtgaacagaccagaaacttgttataaaagcctttttggagaatccgggtattgatcccggtacctctcacatgcttagggagcgctctaccacttgagctaattcccccgttctacgatgatgatttttcagcaatcaaatattaaggcatttctgtttttatctcaggaaatccaggatcgattaaaataacaccaactgtcaattttgcaataaaacaattatacttcttttaatagatcttgaataaaaagttattagccagtatggctatttgcgttattagcacgacgctctaagcgactaacggctatgcggccatttagttctatgctttatttcgtatgatcacttgtacat
gi|3 : gataatattggttgacctactatggcgtgatttgcaatacatgtgttataaatacaaatgaagtgaaacataaaCATTAGGAAACAATAATTACACAACTACTAGTCTCGTACTACGCTACGTATCGTAGAATCACTAGTGGATTTCGGTTATTAGTTAAAATATTAAAAAGGTATTAATAAT---AAT-AGACAGCACGTTGAGACAATTCTTCAAATGAGTGACTGAAGTGAACAAAACATAAACTTGTAGATTTCGGTCTTAATTTCAGAAATAAAAAATGTATTGATGATAACAGACATCATGGCAAGACA--A-TGTGAC--AAATGAAGAAACATTTG------AA-GTGAACAGACCAGAAACTTGTTATAAAAGCCTTTTTGGAGAATCC-GGGTATTGAT-CCCGGTACC--TCTCACATGCTT--AGGGAGCGCTCTACC--ACTTGAGCTAATT-CC--------CCCGTT--------------------C-TACGATGATGATTT----TTCAGCAATCAAAT--ATTAAG-----GCATTT-CTGTTTTTATCTCAGGAAATCCAGGATCGATTA--AAATAACACCAACTGTCA-ATTT-TGCAATAAAACAATTATACT-TCTTTTAATAGATCTTGAATAAAAAGTTAT-TAGCCA--GTATGG------------C-------------T----ATTTGCGTTATTAGCACGACGCTCTAAGCGACTAACGGCT-ATGCGGCCATTTAGTTCTA-TGCTT--TATTTCGTATGAT--C-A--CTT--GT---ACATgtggcaaagtatgatattacaacattaggaaacaataattacacaactactagtctcgtactacgctacgtatcgtagaatcactagtggatttcggttattagttaaaatattaaaaaggtattaataataatagacagcacgttgagacaattcttcaaatgagtgactgaagtgaacaaaacataaacttgtagatttcggtcttaatttcagaaataaaaaatgtattgatgataacagacatcatggcaagacaatgtgacaaatgaagaaacatttgaagtgaacagaccagaaacttgttataaaagcctttttggagaatccgggtattgatcccggtacctctcacatgcttagggagcgctctaccacttgagctaattcccccgttctacgatgatgatttttcagcaatcaaatattaaggcatttctgtttttatctcaggaaatccaggatcgattaaaataacaccaactgtcaattttgcaataaaacaattatacttcttttaatagatcttgaataaaaagttattagccagtatggctatttgcgttattagcacgacgctctaagcgactaacggctatgcggccatttagttctatgctttatttcgtatgatcacttgtacat
gi|4 : gataatattggttgacctactatggcgtgatttgcaatacatgtgttataaatacaaatgaagtgaaacataaaaatgtaacgttatggccagtgtgggggtcgtacccacgacatttgcattattagcacaacgcactaaccgactgagttaaccgaccatgtggcaaagtatgatattacaaTGGCCTACCA-TGGCGTG-TTTGCAATGCATGTGTTATAAATTCAAATGAAGGGAAACTTAAAAA--TGT
gi|4 : gattgggCATTAGGAAACAATAATTACACAACTACTAGTCTCGTACTAAGCTACATATCGTAGAATCACTTGTTGATTTCGGTTATAATTTCAAATATTAAAAAGATATTAATAAT---AGT-AGACAGCACGTGGAGACAATTCTTCAAGTGAGTGACTGAAGTGAACAAAACATAAACTTGTAGATTTCGGTTCTAATTTCAAAAAATAAAAATGTATTGATGACAACAGACATCATGTCAAAACA--A-TGT--C--AAATGATGAAACATG--------AA-GAAAACAAACCAGAAACTTGTTATAAAAGCATACTTGGAGAATCC-GGGTATCGAT-CCCGGTACC--TCTCACATGCTA--AGCGAGCGCTCTACC--ACTTGAGCTAATTCCCC---C-ATCCCTTTGCA-TAAAACATAA---AGAC-TACAATGCTGATAT----TTCAGCAATTGATT--ATTAAG-----GTATTT-TTGTTTCAA--TTAGGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcacgtggcaaagtatgatattacaacattaggaaacaataattacacaactactagtctcgtactaagctacatatcgtagaatcacttgttgatttcggttataatttcaaatattaaaaagatattaataatagtagacagcacgtggagacaattcttcaagtgagtgactgaagtgaacaaaacataaacttgtagatttcggttctaatttcaaaaaataaaaatgtattgatgacaacagacatcatgtcaaaacaatgtcaaatgatgaaacatgaagaaaacaaaccagaaacttgttataaaagcatacttggagaatccgggtatcgatcccggtacctctcacatgctaagcgagcgctctaccacttgagctaattcccccatccctttgcataaaacataaagactacaatgctgatatttcagcaattgattattaaggtatttttgtttcaattaggaccgaaatc
gi|4 : gattgggtggcctaccatggcgtgtttgcaatgcatgtgttataaattcaaatgaagggaaacttaaaaatgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcacgtggcaaagtatgatattacaaGATTTCGGTCCTAATT---GAAAC-AAAAATACCTTAATAATccgaaatc
gi|5 : gattgggtggcctaccatggcgtgtttgcaatgcatgtgttataaattcaaatgaagggaaacttaaaaatgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcacgtggcaaagtatgatattacaacattaggaaacaataattacacaactactagtctcgtactaagctacatatcgtagaatcacttgttgatttcggttataatttcaaatattaaaaagatattaataatagtagacagcacgtggagacaattcttcaagtgagtgactgaagtgaacaaaacataaacttgtagatttcggttctaatttcaaaaaataaaaatgtattgatgacaacagacatcatgtcaaaacaatgtcaaatgatgaaacatgaagaaaacaaaccagaaacttgttataaaagcatacttggagaatccgggtatcgatcccggtacctctcacatgctaagcgagcgctctaccacttgagctaattcccccatccctttgcataaaacataaagactacaatgctgatatttcagcaattgTAACTGACAGCACGTCAATGTA--A-TAT--CTCACATGATGAAGCA----------------AACAAAACATAAACTTGTCATAAAAGCAAATTTGGAGAATCC-GGGTATCGAT-CCCGGTACC--TCTCACATGCTA--AGCGAGCGTTCTACC--ACTTGAGCTAATT-CCC---C-ATTTCGTCGTAGTAAAACATAA---ACAA-TACGATAATGATAACAAGTTCAGCAATCAAATTGATT--------TTTTTT-CTGTTTCCATCTCAGATAAACAAGAAACTATT---AAA-AATAGAGAATGTCA-TTTT-TTGAATAAAACTTGCATATTCTCTTTTGTCAGATTGTGAATTAAAATATAT-TG
gi|5 : AGGTATGGCCAAT---GA---GACAGCACGTTGAAACAATTCTTCAAATGAGTGACTGTAGTGAACAAAACATAAACTTGcaattgtagatgtcgaacacaagatatttgcgtagccgaacatattctagaaatttgtatttcatcaaatagtgatacaataatgatgattgagataagattgattggactaccatgttcaggtatggccaatgagacagcacgttgaaacaattcttcaaatgagtgactgtagtgaacaaaacataaacttg
gi|6 : taactgacagcacgtcaatgtaatatctcacatgatgaagcaaacaaaacataaacttgtcataaaagcaaatttggagaatccgggtatcgatcccggtacctctcacatgctaagcgagcgttctaccacttgagctaattccccatttcgtcgtagtaaaacataaacaatacgataatgataacaagttcagcaatcaaattgattttttttctgtttccatctcagataaacaagaaactattaaaaatagagaatgtcattttttgaataaaacttgcatattctcttttgtcagattgtgaattaaaatatattgcaattgtagatgtcgaacacaagatatttgcgtagccgaacatattctagaaatttgtatttcatcaaatagtgatacaataatgatgattgagataagattgattggactaccatgttc---AATGAGACAGCACGTTGAAACAATTCTTCAAATGAGTGACTGTAGTGAACAAAACATAAACTTGTAGATTTCGGTCTTAATTTCAAAAAATAAAAATGTATTGATGATAACAGACATCATGTCAAGACA--A-TGTCAC--AAATGATGAAACATTTG------AA-GTGAACAGACTAGAAACTTGTTATAAAAGCCTTTTTGGAGAATCC-GGGTATTGAT-CCCGGTACA--TCTCAAATGCTA--AGCGAGCGCTCTACC--ACTTGAGTTAAGT-CCCT--C-ATCCCTATGTATTAACTCATTA---AGAC-TACGATAGTGATAT----TTCAGCAATCGAAT--ATTTAG-----ATA-TT-CTGTTTCCATTTCAGGAAACCTAGAATCGGTAA--AAATAATAGAAAATGTCA-ATTT-TGCAATAAAACAGATATACT-TCTTTTAATAGATCTTGAATAAAAAGTTAT-TGGCCA--GTATGG------------C-------------T----ATTTACGTTATTAGCACGACGCAGTAAGTGACTAA--GCA-ATGCGGCCATTTCGTTCTA-AGCTT--TAT
gi|7 : TTAAGGCA--A-TTTT-C--AACTAATTAAGCACGATAATT--AA-GTGAACAAAACAGAAACCTGTTGTATAAATACAGTTGGAGAATCC-TGGTATCGAT-CTCGGTACT--TCTCACATGCTA--ATCGAGCGCTCTACC--ACTTGAGCTAATT-CCC---T-ATTCAGTTGTAGTAAAATATAA---TTAA-TACGCTGATGACATCGAGTTCAGCAATCGAAT--TTTAAG-----GCTTTT-CTGTTTCCATCT-----------------ATTA--AAA-AATAG-AAATGCCACATTT-T-TAATAAAACTCGGATAATCCCTTTTGCCAGATTGTGAATTAAAA--TATATGGCAATTGTA-GA------------CATCGAAAACAAGAT----ATTCGCGTTATTGATAAGACACCCTAACCGACTGA--GCT-AGCCGGACAT---ATTCTAGTAATTTGTATTTC
gi|8 : taGATTGGTTGGCCTACCA-TGGCGTG-TTTGCAATGCATGTGTTATAAATTCAAATGAAGGGAAACTTAAAAA--TGTAAAGGTA-TGGCCAGTGTGa
gi|8 : agataaAATGTAAAGGTAT--GGCCA--GTGTGGACGGTGGAACC-C-------------TCGACATTCGTGTTATTAGTACAACGCTCTAACAGACTGT--GCT-AACCGACCATgacggtggaaccctcgacattcgtgttattagtacaacgctctaacagactgtgctaaccgaccatgtggcaaagtatgatattacaacattaggaaacagtaattacacaactactagtctcgtactacgctacatatcgtaggatcacttgtagatttcggttataatttcaaatattaaaaagatattaataataatagacagcacgtggagacaattcttcaagtgagtgactgaagtgaacaaaacataaacttgtagatttcggtcctaattgaaacaaaaataccttaataa
gi|8 : agataagattggttggcctaccatggcgtgtttgcaatgcatgtgttataaattcaaatgaagggaaacttaaaCATTAGGAAACAGTAATTACACAACTACTAGTCTCGTACTACGCTACATATCGTAGGATCACTTGTAGATTTCGGTTATAATTTCAAATATTAAAAAGATATTAATAAT---AAT-AGACAGCACGTGGAGACAATTCTTCAAGTGAGTGACTGAAGTGAACAAAACATAAACTTGTAGATTTCGGTCCTAATT---GAAAC-AAAAATACCTTAATAAgtggcaaagtatgatattacaacattaggaaacagtaattacacaactactagtctcgtactacgctacatatcgtaggatcacttgtagatttcggttataatttcaaatattaaaaagatattaataataatagacagcacgtggagacaattcttcaagtgagtgactgaagtgaacaaaacataaacttgtagatttcggtcctaattgaaacaaaaataccttaataa
gi|9 : agataagattggttggcctaccatggcgtgtttgcaatgcatgtgttataaattcaaatgaagggaaacttaaaaatgtaaaggtatggccagtgtggacggtggaaccctcgacattcgtgttattagtacaacgctctaacagactgtgctaaccgaccatgtggcaaagtatgatattacaaTTTGGTAAATTTTGGATATCGATTCCCGGTTCC--TCTCACATGCTA--AGCGAGTGCTCTACC--ACTTGAGCTAATT-CCC---C-ATTCCCTTGTAGTAAAACATAA---TTAA-TACGATGATGATATCA
gi|9 : atTATCATGACA---TAACCGACTGA--GCTTAC-CGGCTATTTCGTAGTAGTGATC---ATTC----TGGT--CCA--TTTTAGTCTTAATTTCAAATATTAAAAAGTTATTAATAATAATAGACAGCACATTAATGCAA-TTTC---TCAAT----------TGAT-AAAGTAAACAAAACATACTCTTGTTATAAAAGGATACTTTGAGAATCCGGGTACCGATCCCTGTACCCGTCTCACATtgacataaccgactgagcttaccggctatttcgtagtagtgatcattctggtccattttagtcttaatttcaaatattaaaaagttattaataataatagacagcacattaatgcaatttctcaattgataaagtaaacaaaacatactcttgttataaaaggatactttgagaatccgggtaccgatccctgtacccgtctcacatattattacgacgccctaacagactgagctaaccggacattttgtagtaatttgtatttcat
gi|9 : attttggtaaattttggatatcgattcccggttcctctcacatgctaagcgagtgctctaccacttgagctaattccccattcccttgtagtaaaacataattaatacgatgatgaATTTTAGTCTTAATTTCAAATATTAAAAAGTTATTAATAATAATAGACAGCACATTAATGCA--A-TTT--CTCAATTGATAAAGTA----------------AACAAAACATACTCTTGTTATAAAAGGATACTTTGAGAATCC-GGGTACCGAT-CCCTGTACCCGTCTCACATATTATTA-CGA-CGCCCTAACAGAC-TGAGCTAA----CCGGAC-ATT---TTGTAGTAAattattacgacgccctaacagactgagctaaccggacattttgtagtaatttgtatttcat