lowQualScore : 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444
lowQualScore : 33 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 11 4 1 444444444444444444 3333333333 44 2 8888888888888888888888 11111
lowQualScore : 00 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 22 0 7 222222222222222222 0 0 4 7777777777 33 0 66 3333333333333333333333 99999 2
lowQualScore : .. ............................................................................................................................................................................................................................................................................................................................................................................................................................... .. . . .................. . . . .......... .. . .. ...................... ..... .
lowQualScore : 00 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 00 0 0 333333333333333333 7 7 0 0000000000 00 0 00 5555555555555555555555 00000 5
consensus : TAACGCTGACCATTCAGGTTGGATGTGACAAGGTCAATAATTCA----TTT--TCC-AGCTTT-AT-GTCAATT-CA-TCTGAACA-A-GTTTTATCA-CAATCCGACGGAA-A-CTAAAGGTGCTACAGCGTTTACAAGGC--A------AA-----------TC--------------AATCAAGNG--CCATAACTCTGTCCATTT-------------TG----------------GTC-CA-A-NAAC-TNNTCC--GAGCT--TTC-ATTGTCAA----TAGC-AT-----TC-----TNAATTAGGTCANAATCTGATGAAAAC-TAAA----TAC-AGTGTTTACAAGGCAAAAATNNNCAGCTTTTTATCAAATAATCAAGGGTGATAAC-TCTT-TCCCTTTTGATCTGGTATTATGGTTCAATAACTCATCTGAGCTTTCATCGCCAATACNACAGTTCTGACCAAATTTGATCAAGATCNGAANNGAGNNTGAAACAGTGTCCACANNATTCATCAGTTCATGGTCAGCGCTTTCCCATCNATCAANGGCC
Reference ( gi|2 ) : TAACTGTGACCATTC--------TGCTCCAATGTCGCTGATTCGGGGTTTTC-TCCAAGCTTTCATTGTCACTTTCAGTCTGAACA-A-GTTTTCTCA-CAATCTGATTGAA-A-TTACAGGTGCTACAGTGCTTACAAAGC--A------AA-----------TC--------------AATCAAATG--TCGTAACTCTGTCCATTT-------------TG----------------GTC-CA-A-GAAC-TGTTCA--GAGCA--TTT-ATTGTCAA----TAGC-AT-----TC-----TAAATTAGGTCAAAATCTGATGAACACCTAAGTT--TAC-AGTGTCTATGAGACAAAAATAATCAATTTTTTAT------ATCAA------TAACATCTTGTCCATTCT-ATC-------------CAATGGCT-ATCAGAGCTTTCATGGACATT--CACAATTCAGACCAAGTCTGATCAAGATCAG-AGGAAAAG-GAAA-GGTG-TTACATTATTTACC----CA-AATCAGTGCTTTTCCATTTATCAAGGGCCATAA
gi|1 : TAACGCTGACCATTCAGGTTGGATGTGACAAGGTCAATAATTCA----TTT------AGCTTAAATGGTCAATT---------ATA-A-GTTTTATCT-CAATCTGGTGAAA-A-TTAAAAGTGCCGTAGCGTTTATAAGGC--A------AA---------------------------AATCA
gi|4 : ggtcctatggtattaaatatttaagcagaaatcagttccttctgatattgaattaattaaacttaaatccaattccaaagtacccacaagtcttaaaggaaactacataattttatatttgagctgaaaccatttttctactgttttgtaacagtggctgtaactttgcccatttacctcaaaaaccaatcagagaagttagaacctcatttatttcaatacataaaatttcattaaaaattctcaaaggaaactcaaaatatttagcagaaatccattttttctttttcagtaacaaagtccccatcttatttttctaacagtgatttggccctgtctcaatttacctcaaaaccaatcctaagcttctttttcatttttatatgaactaatattgacaaaatttaattcaaatatcttaaaagatgagttgaaaaccctcttgtttctattttcatttttttcaagaatcaaagtgatataacttttgtttcagaaacaagggccaTTCATCCAAGCTTT-----TCATTTTCAAT---AACC-ATGCTATGTCA-CAATCTGACGAGA-A-CTAAATGTGCT--AGTGTTTACAATGTAAA------AA-----------TCTGCATTTATCAAATAATCAAGGG--TGATAACTCTTTCCCTTTTGATCTGGTATTATG----------------GTT-CA-A-TAAC-TCATCT--GAGCT--TTC-ATTGCCAA----TACC-ACAGTGATC------AAATCTGATCAAGATCTGATTAA-AGGTGAA-----AC-AGTGTTTACATGAC---CATGATCAGCTTTTTgc
gi|8 : ttcaagaaTTG-TCCTAACTTTCATCGTCAATGACATTCTGACCA-A-GTTTttcattaagg
gi|9 : aattgacagaaactaagctgtaacagtgtttcagcatatttcaatcaataaagggccataactttgtccaatttgctagtttaaggaacttgtccaaggaacCTGA-CAGA-GCTTGATCA-AAATCCAATTAAATA-TTAAAGGTGCTGCAATATTCATTA-GC--ATTTAC-AA-----------TC--------------AATGAAGTG--TCGTACATCTGTCCA-----------------------------------TC-C-----AACTTGTTCA---CGC---TTC-A-TGTCAA----TAGC-AT-----TCCGACATCAATGAAGCCACAATCTGgatgaagatcc
gi|10 : A-A-GTATTCTGATCAACTCGATTATA-A-TCGAAGGTGCTATAACGTTTATAATGCT-A------AA-----------TC--------------AG-CAA-----CCATAACTGTGTCTATTC-------------TG----------------GTCATATA-TAGC-CGTTTATTGA-CAATTTT-TTTGACAAAAATTAG---------TC-----TCAATTAG
gi|15 : t-CAATCTGATGGAA-A-CTAAAGGTGCTACAATGTTTACAAGGC--A------AAAC---------TC--------------AAT
gi|8 : actAAT-TGACAGAA-A-CTA-AGCTGTAACAGTGTTT-CA--GC--ATATTTCAA-----------TC--------------AATAAAGGG--CCATAACTTTGTCCAATT-------------TGCTAGTTTAAGGAACTTGTC-CA-AGGAAC-TTGTCC--TAACT--TTC-ATCGTCAA----TGAC-AT-----TC-----TGA-------CCAAGTTTGATGAA
gi|11 : TTGAA-AACTGAAGGTACTACAGCGTTCACATGAC--A------AAAATCTGCTTTTTC--------------AATCAATTGAGGCATAATTC----CATTT-------------TG----------------ATC-gatcc
gi|4 : acaatgctctgacgagaagTT-CA-A-GAAT-TCATCC--AAGCT--TTTCATTTTCAA----TAACCAT-----GC-----TA---T--GTCACAATCTGACGAGAAC-TAAATG--TGCTAGTGTTTACAATGTAAAAATCTGCA----TTTATCAAATAATCAAGGGTGATAAC-TCTT-TCCCTTTTGATCTGGTATTATGGTTCAATAACTCATCTGAGCTTTCATTGCCAATACCACAGT---GATCAAATCTGATCAAGATCTG-ATTAAAGGTGAAACAGTGTTTACATGA-----C----CATGATCA--GCTTTTT--TTCATTAAGtgataagatggaatatgatttacct
gi|15 : AATCTGATGGAAACTAAAGGTGCTAC-AATGTTTACAAGGCAAAA
gi|8 : actcAACTTTCATCGTCAAT--GACA-TTCTGACCAAGTTTGATGAAGATCctcaat
gi|13 : aattgacagaaactaagctgtaacagtgtttcagcatatttcaatcaataaagggccataactttgtccaatttgctagtttaaggaacttgtccaaggaacttgtcctACTCTGACAAAATTTGATCAGGATCAGAAGGGAGCT-GAAA--GTG-CCACAGTATTCATCAGTTCA-AGTCAGCA-TTTCCCATCAATCAATAGCCc
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|3 ): TGAAGGTCCTGTGGTGATGACAAGCCAGAATTTTTTCTGACTTGATTTACCTAAAAACAAATCTTAACTTTACAATCAAAATATCTAAATGTCTATTTTAAGTAACAGTGATCTTGACTTTGACATGATTTACCTCAAATCAATCCCAAGCTTTTTATCCATATTAAAAACTTAAACACCAAATTTAATCAAAATTAGTGAATCTGAAAATTATTGAGCAGAAAACATTTTTCTATTTTCAGTAAATGGTGGCCTTAACCTTGACACCATTCACATCAAAACAAATCTTATGCTTTCTTTTCACCACAAAATCTTGATGACAATGATTAATTGAGTAGAAACCTTTTCTTTTTAAGTAACAAGGGGCCTTGCCCATTTTACCCCAAAACCACCCCAAGCTTCTGTTT
Unaligned ( gi|5 ): GTCTTAACGGAAACTAAAATTATATAACAGAAACCATTTTCTGCATTATTAACCGTGAAGTTGATCCGAATTACCTCGAAACCAGTTCGACGCTTCCTTTTTCATTGTCATAGGAACCGACACACTTTTATTTAAAATATCTTACTGAGCGGAAAATTTTTTTTTTTACATTTTTTTAATCATTTGAAGTTAAGAACGTTGTTT
Unaligned ( gi|6 ): ATTCTTCTAGTCAATGTCTGACCTTGTTTGGTCATGATAAAAACGAAATATACAAGTGTTTGCAAGGCAACAATCAACATTTAAATCAATTAAGGGCCACAACCCCAATAATTGACCCAATAGAGCCAGTTCATGAACTTGTCTGAGCTAGCATGGTCAATATTCAGTAACATTCCAACA
Unaligned ( gi|7 ): TTTAAAAACAGAATTAGTAAAAAAATATATTGCAACAAAACCATTTCTCTATTTTTAGTAACTGGTGGCCTTGACACGATTATGCTCAACAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGAAACCCAAGTTTCCTTTTAGG
Unaligned ( gi|12 ): TTAACTCAAAACCCTTCCGAAGCTTCCTTTTTACATTAGAAACCTACAAAATATTATTATAATATCTTAAAAGAAACTTATTGAGTGGAAACAATT
Unaligned ( gi|14 ): TGTTAATTTTAATAACAGTGACATTGACTTTGACACGGTTTTCTTAAAGTCAATCCCTTTT
Unaligned ( gi|16 ): AAACCATTTTTCCATTTTTAGAAATGGTGGCTTTAACCT
Alignments
lowQualScore : 1111111111111111111111111111111111111111
lowQualScore : 33333333 0000000000000000000000000000000000000000 1 4444444444444444444 1111 5555555555555555 11 1 1 4444444444444 1 444444444444 555555555555555 111111 7777777777777777777777777777777777 1 1 1111 222222222 22 222 555555555555555 11
lowQualScore : 55 44444444 55 2 3 0000000000000000000000000000000000000000 0 3 8 66 5 1 5 7777777777777777777 8888 1 44 6 3333333333333333 3 11 22 4 9 0 3 0 2222222222222 8 0 333333333333 333 888888888888888 333333 0000000000000000000000000000000000 2 2 3 9999 7 1 1 333333333 22 000 22 000000000000000 55 0 11 1
lowQualScore : .. ........ .. . . ........................................ . . . .. . . . ................... .... . .. . ................ . .. .. . . . . . ............. . . ............ ... ............... ...... .................................. . . . .... . . . ......... .. ... .. ............... .. . .. .
lowQualScore : 00 55555555 55 5 0 0000000000000000000000000000000000000000 0 0 0 33 7 7 7 7777777777777777777 0000 4 00 0 0000000000000000 8 88 00 2 8 0 2 0 2222222222222 8 0 777777777777 000 333333333333333 000000 7777777777777777777777777777777777 0 0 7 3333 3 0 0 333333333 33 000 00 333333333333333 77 7 77 0
consensus : TAACNNTGACCATTCAGGTTGGATGCGNCAANGTCGNTGATTCGGGGTTTTCTCCAAGCTTANCATNGTCANTTTCAGTCTGAACA-AGTTTTNTCA-CAATCCGATNGAA-ACTAAAGGTGCTACAGCGTTTACAAGGC-A------AA-----------TCAATCAA--GNGCCGTAACTCTGTCCATTTTG----------------GTCCGA-GAACTCGTCCGAGCTTT-CATTGTCAATAGC-ATTC-----TNAATTAGGTCANAATCTGATGAA-AACTAAA--TAT---A---GTGTTTACGAGGCAAAAATCANCA--TTTTTAT-AAAT-AATCAAGGGC-ATAAC-TCTT-TCCC--T-TTTGATCCGGTA---CCA--GTTCAATAACTCGTCTGAGCTTTCATGGNCAATACCACAGTTCTGACCAAATCTGATCAAGATCAGAA-GGAAGNTGAAA-AGTGTCTACATTATTCACC---CCA-AATCAGCGCTTTTCCATTAATCAANGGCC
Reference ( family-857 ) : TAACGCTGACCATTCAGGTTGGATGTGACAAGGTCAATAATTCA-----TTTTCCA-GCTT-T-AT-GTCAATT-CA-TCTGAACA-AGTTTTATCA-CAATCCGACGGAA-ACTAAAGGTGCTACAGCGTTTACAAGGC-A------AA-----------TCAATCAA--GNGCCATAACTCTGTCCATTTTG----------------GTCCAA-NAACTNNTCCGAGCTTT-CATTGTCAATAGC-ATTC-----TNAATTAGGTCANAATCTGATGAA-AACTAAA--TAC---A---GTGTTTACAAGGCAAAAATNNNCAGCTTTTTATCAAAT-AATCAAGGGTGATAAC-TCTT-TCCC--T-TTTGATCTGGTA---TTATGGTTCAATAACTCATCTGAGCTTTCATCGCCAATACNACAGTTCTGACCAAATTTGATCAAGATCNGAANNGAGNNTGAAACAGTGTCCACANNATTCATCAGTTCATGGTCAGCGCTTTCCCATCNATCAANGGCC
gi|1 : TAACGCTGACCATTCAGGTTGGATGTGACAAGGTCAATAATTCA-----TTT---A-GCTTAA-ATGGTCAATT---------ATA-AGTTTTATCT-CAATCTGGTGAAA-ATTAAAAGTGCCGTAGCGTTTATAAGGC-A------AA-------------AATCA
gi|10 : ggtcctatggtattaaatatttaagcagaaatcagttccttctgatattgaattaattaaacttaaatccaattccaaagtacccacaagtcttaaaggaaactacataattttatatttgagctgaaaccatttttctactgttttgtaacagtggctgtaactttgcccatttacctcaaaaaccaatcagagaagttagaacctcatttatttcaatacataaaatttcattaaaaattctcaaaggaaactcaaaatatttagcagaaatccattttttctttttcagtaacaaagtccccatcttatttttctaacagtgatttggccctgtctcaatttacctcaaaaccaatcctaagcttctttttcatttttatatgaactaatattgacaaaatttaattcaaatatcttaaaagatgagttgaaaaccctcttgtttctattttcatttttttcaagaatcaaagtgatataacttttgtttcagaaacaagggccaA-AGTATTCTGATCAACTCGATTATA-ATCGAAGGTGCTATAACGTTTATAATGCTA------AA-----------TCAG-CAA-----CCATAACTGTGTCTATTCTG----------------GTCgc
gi|11 : tGAAA-ACTGAAGGTACTACAGCGTTCACATGAC-A------AAAATCTGCTTTTTCAATCAATTGAGGCATAAT----TCCATTTTG----------------ATCTGA-TAAatatatagccgtttattgacaatttttttgacaaaaattagtctcaattag
gi|13 : acaatgctctgacgagaagttTCTGACAAAATTTGATCAGGATCAGAAGGGAG-CTGAA--AGTG-CCACAGTATTCATCAGTTCA-AGTCAGCA-TTTCCCATCAATCAATAGCCgatggaatatgatttacct
gi|15 : ac-CAATCTGATGGAA-ACTAAAGGTGCTACAATGTTTACAAGGC-A------AAAC---------TCAAT
gi|2 : actTAACTGTGACCATTC--------TGCTCCAATGTCGCTGATTCGGGGTTTTCTCCAAGCTT-TCATTGTCACTTTCAGTCTGAACA-AGTTTTCTCA-CAATCTGATTGAA-ATTACAGGTGCTACAGTGCTTACAAAGC-A------AA-----------TCAATCAA--ATGTCGTAACTCTGTCCATTTTG----------------GTCCAA-GAACTGTTCAGAGCATT-TATTGTCAATAGC-ATTC-----TAAATTAGGTCAAAATCTGATGAACACCTAAGTTTAC---A---GTGTCTATGAGACAAAAATAATCAATTTTTTAT-------ATCA------ATAACATCTTGTCCA--T-TCT-ATC----------------CAATGGCT-ATCAGAGCTTTCATGGACATT--CACAATTCAGACCAAGTCTGATCAAGATCAGA--GGAAAAGGAAA-GGTGT-TACATTATTTACC----CA-AATCAGTGCTTTTCCATTTATCAAGGGCC
gi|4 : TTCAA-GAATTCATCCAAGCTTTTCATTTTCAATAACCATGC-----T--AT---GTCACAATCTGACGAG-AACTAAA--TGTGCTA---GTGTTTACAATGTAAAAATCTGCA----TTTATCAAAT-AATCAAGGGTGATAAC-TCTT-TCCC--T-TTTGATCTGGTA---TTATGGTTCAATAACTCATCTGAGCTTTCATTGCCAATACCACAG---TGATCAAATCTGATCAAGATCTG-ATTAAAGGTGAAACAGTGTTTACATGA---------CCATGATCAGCTTTTTTTCATTAAataa
gi|6 : TTTGGTCA-----TGATAAA-AACGAAA--TAT---ACAAGTGTTTGCAAGGCAACAATCAACA--TTT-----AAATCAATTAAGGGCCACAAC-------CCCAATAATTGACCCAATAGAGCCA--GTTCATGAACTTGTCTGAGCTAGCATGGTCAATATT-CAGTgg
gi|8 : attcttctagtcaatgtctgaccttgGACAGAA-ACTAA-GCTGTAACAGTGTTT-CA--GC-ATATTTCAA-----------TCAATAAA--GGGCCATAACTTTGTCCAATTTGCTAGTTTAAGGAACTTGTCCAAGGAACTTGTCCTAACTTT-CATCGTCAATGAC-ATTC-----TGA-------CCAAGTTTGATGAA-GAaacattccaaca
gi|9 : aattCTGA-CAGAGCTTGATCA-AAATCCAATTAAATATTAAAGGTGCTGCAATATTCATTAG-C-ATTTAC-AA-----------TCAATGAA--GTGTCGTACATCTGTCCA----------------------TCC----AACTTGTTCACGC-TT-CA-TGTCAATAGC-ATTCCGACATCAATGAAGCCACAATCTGtcc
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TGAAGGTCCTGTGGTGATGACAAGCCAGAATTTTTTCTGACTTGATTTACCTAAAAACAAATCTTAACTTTACAATCAAAATATCTAAATGTCTATTTTAAGTAACAGTGATCTTGACTTTGACATGATTTACCTCAAATCAATCCCAAGCTTTTTATCCATATTAAAAACTTAAACACCAAATTTAATCAAAATTAGTGAATCTGAAAATTATTGAGCAGAAAACATTTTTCTATTTTCAGTAAATGGTGGCCTTAACCTTGACACCATTCACATCAAAACAAATCTTATGCTTTCTTTTCACCACAAAATCTTGATGACAATGATTAATTGAGTAGAAACCTTTTCTTTTTAAGTAACAAGGGGCCTTGCCCATTTTACCCCAAAACCACCCCAAGCTTCTGTTT
Unaligned ( gi|5 ): GTCTTAACGGAAACTAAAATTATATAACAGAAACCATTTTCTGCATTATTAACCGTGAAGTTGATCCGAATTACCTCGAAACCAGTTCGACGCTTCCTTTTTCATTGTCATAGGAACCGACACACTTTTATTTAAAATATCTTACTGAGCGGAAAATTTTTTTTTTTACATTTTTTTAATCATTTGAAGTTAAGAACGTTGTTT
Unaligned ( gi|7 ): TTTAAAAACAGAATTAGTAAAAAAATATATTGCAACAAAACCATTTCTCTATTTTTAGTAACTGGTGGCCTTGACACGATTATGCTCAACAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGAAACCCAAGTTTCCTTTTAGG
Unaligned ( gi|12 ): TTAACTCAAAACCCTTCCGAAGCTTCCTTTTTACATTAGAAACCTACAAAATATTATTATAATATCTTAAAAGAAACTTATTGAGTGGAAACAATT
Unaligned ( gi|14 ): TGTTAATTTTAATAACAGTGACATTGACTTTGACACGGTTTTCTTAAAGTCAATCCCTTTT
Unaligned ( gi|16 ): AAACCATTTTTCCATTTTTAGAAATGGTGGCTTTAACCT
Alignments
lowQualScore : 33333333 2222 22222 333 2222222222 1 4444444444444444444 1111 5555555555555555 111 1 1 4444444444444 1 333333333333 777777777777777777777777777777777777777777777777777777777777777777 11 1111 1 11 555555555 1 11
lowQualScore : 22 44444444 33 1 1 3333 66666 111 1 1 8888888888 0 1 8 1 5 1 5 7777777777777777777 8888 1 44 6 3333333333333333 333 44 4 9 0 3 0 2222222222222 8 0 999999999999 0 1 666666666666666666666666666666666666666666666666666666666666666666 22 1 3333 7 7 1 7 3 99 111111111 3 55 1
lowQualScore : .. ........ .. . . .... ..... ... . . .......... . . . . . . . ................... .... . .. . ................ ... .. . . . . . ............. . . ............ . . .................................................................. .. . .... . . . . . .. ......... . .. .
lowQualScore : 00 55555555 55 0 0 0000 00000 555 0 0 5555555555 0 0 0 0 7 7 7 7777777777777777777 0000 4 00 0 0000000000000000 444 55 2 8 0 2 0 2222222222222 8 0 000000000000 7 0 000000000000000000000000000000000000000000000000000000000000000000 77 0 7777 3 3 0 3 3 33 000000000 3 77 0
consensus : TAACNNTGACCATTCAGGTTGGATGCGNCAANGTCGNTGATTCGGGGTTTTCTCCAAGCTTANCATNGTCANTTTCAGTCTGAACA-AGTTTTNTCA-CAATCCGATNGAA-ACTAAAGGTGCTACAGCGTTTACAAGGC-A------AA-----------TCAATCAA--GNGCCGTAACTCTGTCCATTTTG----------------GTCCGA-GAACTCGTCCGAGCTTT-CATTGTCAATAGC-ATTC-----TNAATTAGGTCANAATCTGATGAA-AACTAAA--TAT---A---GTGTTTACGAGGCAAAAATCANCA--TTT--AT-AAAT-AATCAAGGG-C-ATAAC-TCTT-TCCC--T-TTTGATCCGGTA---CCA--GTTCAATAACTCGTCTGAGCTTTCATGGNCAATACCACAGTTCTGACCAAATCTGATCAAGATCAGAAGGAAGNTGAAA-AGTGTCTACATTATTCA-C---CCA-AATCAGCGCTTTTCCATTAATCAANGGCC
Reference ( family-857 ) : TAACNNTGACCATTCAGGTTGGATGCGNCAANGTCGNTGATTCGGGGTTTTCTCCAAGCTTANCATNGTCANTTTCAGTCTGAACA-AGTTTTNTCA-CAATCCGATNGAA-ACTAAAGGTGCTACAGCGTTTACAAGGC-A------AA-----------TCAATCAA--GNGCCGTAACTCTGTCCATTTTG----------------GTCCGA-GAACTCGTCCGAGCTTT-CATTGTCAATAGC-ATTC-----TNAATTAGGTCANAATCTGATGAA-AACTAAA--TAT---A---GTGTTTACGAGGCAAAAATCANCA--TTTTTAT-AAAT-AATCAAGGG-C-ATAAC-TCTT-TCCC--T-TTTGATCCGGTA---CCA--GTTCAATAACTCGTCTGAGCTTTCATGGNCAATACCACAGTTCTGACCAAATCTGATCAAGATCAGAAGGAAGNTGAAA-AGTGTCTACATTATTCACC---CCA-AATCAGCGCTTTTCCATTAATCAANGGCC
gi|1 : TAACGCTGACCATTCAGGTTGGATGTGACAAGGTCAATAATTCA----TTT-----AGCTTAA-ATGGTCAATT---------ATA-AGTTTTATCT-CAATCTGGTGAAA-ATTAAAAGTGCCGTAGCGTTTATAAGGC-A------AA-------------AATCA
gi|10 : ggtcctatggtattaaatatttaagcagaaatcagttccttctgatattgaattaattaaacttaaatccaattccaaagtacccacaagtcttaaaggaaactacataattttatatttgagctgaaaccatttttctactgttttgtaacagtggctgtaactttgcccatttacctcaaaaaccaatcagagaagttagaacctcatttatttcaatacataaaatttcattaaaaattctcaaaggaaactcaaaatatttagcagaaatccattttttctttttcagtaacaaagtccccatcttatttttctaacagtgatttggccctgtctcaatttacctcaaaaccaatcctaagcttctttttcatttttatatgaactaatattgacaaaatttaattcaaatatcttaaaagatgagttgaaaaccctcttgtttctattttcatttttttcaagaatcaaagtgatataacttttgtttcagaaacaagggccaA-AGTATTCTGATCAACTCGATTATA-ATCGAAGGTGCTATAACGTTTATAATGCTA------AA-----------TCAG-CAA-----CCATAACTGTGTCTATTCTG----------------GTCgc
gi|11 : tTGAAA-ACTGAAGGTACTACAGCGTTCACATGAC-A------AAAATCTGCTTTTTCAATCAATTGAGGCATAAT----TCCATTTTG----------------ATCTGA-TAAatatatagccgtttattgacaatttttttgacaaaaattagtctcaattag
gi|13 : acaatgctctgacgagaagtTCTGACAAAATTTGATCAGGATCAGAAGGGAGCTG-AA-AGTG-CCACAGTATTCATCAGTTCA-AGTCAGCA-TTTCCCATCAATCAATAGCCgatggaatatgatttacct
gi|15 : ac-CAATCTGATGGAA-ACTAAAGGTGCTACAATGTTTACAAGGC-A------AAAC---------TCAAT
gi|2 : actTAACTGTGACCATTC--------TGCTCCAATGTCGCTGATTCGGGGTTTTCTCCAAGCTT-TCATTGTCACTTTCAGTCTGAACA-AGTTTTCTCA-CAATCTGATTGAA-ATTACAGGTGCTACAGTGCTTACAAAGC-A------AA-----------TCAATCAA--ATGTCGTAACTCTGTCCATTTTG----------------GTCCAA-GAACTGTTCAGAGCATT-TATTGTCAATAGC-ATTC-----TAAATTAGGTCAAAATCTGATGAACACCTAAGTTTAC---A---GTGTCTATGAGACAAAAATAATCAATTTTTTAT-------ATCA-------ATAACATCTTGTCCA--T-TCT-ATC----------------CAATGGCT-ATCAGAGCTTTCATGGACATT--CACAATTCAGACCAAGTCTGATCAAGATCAG-AGGAAAAGGAAA-GGTGT-TACATTATTTA-C---CCA-AATCAGTGCTTTTCCATTTATCAAGGGCC
gi|4 : TTCAA-GAATTCATCCAAGCTTTTCATTTTCAATAACCATGC-----T--AT---GTCACAATCTGACGAG-AACTAAA--TGTGCTA---GTGTTTACAATGTAAAAATCTGCA--TTT--ATCAAAT-AATCAAGGG-TGATAAC-TCTT-TCCC--T-TTTGATCTGGTA---TTATGGTTCAATAACTCATCTGAGCTTTCATTGCCAATACCACAG---TGATCAAATCTGATCAAGATCTGATTAAAGGTGAAACAGTGTTTACATGA---------CCATGATCAGCTTTTTTTCATTAAataa
gi|6 : TTTGGTCA-----TGATAAA-AACGAAA--TAT---ACAAGTGTTTGCAAGGCAACAATCAACA--TT----T-AAATCAATTAAGGGCC-ACAAC-------CCCAATAATTGACCCAATAGAGCCA--GTTCATGAACTTGTCTGAGCTAGCATGGTCAATATT-CAGTgg
gi|8 : attcttctagtcaatgtctgaccttgGACAGAA-ACTAA-GCTGTAACAGTGTTT-CA--GC-ATATTTCAA-----------TCAATAAA--GGGCCATAACTTTGTCCAATTTGCTAGTTTAAGGAACTTGTCCAAGGAACTTGTCCTAACTTT-CATCGTCAATGAC-ATTC-----TGA-------CCAAGTTTGATGAA-GAaacattccaaca
gi|9 : aattCTGA-CAGAGCTTGATCA-AAATCCAATTAAATATTAAAGGTGCTGCAATATTCATTAG-C-ATTTAC-AA-----------TCAATGAA--GTGTCGTACATCTGTCCA----------------------TCC----AACTTGTTCACGC-TT-CA-TGTCAATAGC-ATTCCGACATCAATGAAGCCACAATCTGtcc
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TGAAGGTCCTGTGGTGATGACAAGCCAGAATTTTTTCTGACTTGATTTACCTAAAAACAAATCTTAACTTTACAATCAAAATATCTAAATGTCTATTTTAAGTAACAGTGATCTTGACTTTGACATGATTTACCTCAAATCAATCCCAAGCTTTTTATCCATATTAAAAACTTAAACACCAAATTTAATCAAAATTAGTGAATCTGAAAATTATTGAGCAGAAAACATTTTTCTATTTTCAGTAAATGGTGGCCTTAACCTTGACACCATTCACATCAAAACAAATCTTATGCTTTCTTTTCACCACAAAATCTTGATGACAATGATTAATTGAGTAGAAACCTTTTCTTTTTAAGTAACAAGGGGCCTTGCCCATTTTACCCCAAAACCACCCCAAGCTTCTGTTT
Unaligned ( gi|5 ): GTCTTAACGGAAACTAAAATTATATAACAGAAACCATTTTCTGCATTATTAACCGTGAAGTTGATCCGAATTACCTCGAAACCAGTTCGACGCTTCCTTTTTCATTGTCATAGGAACCGACACACTTTTATTTAAAATATCTTACTGAGCGGAAAATTTTTTTTTTTACATTTTTTTAATCATTTGAAGTTAAGAACGTTGTTT
Unaligned ( gi|7 ): TTTAAAAACAGAATTAGTAAAAAAATATATTGCAACAAAACCATTTCTCTATTTTTAGTAACTGGTGGCCTTGACACGATTATGCTCAACAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGAAACCCAAGTTTCCTTTTAGG
Unaligned ( gi|12 ): TTAACTCAAAACCCTTCCGAAGCTTCCTTTTTACATTAGAAACCTACAAAATATTATTATAATATCTTAAAAGAAACTTATTGAGTGGAAACAATT
Unaligned ( gi|14 ): TGTTAATTTTAATAACAGTGACATTGACTTTGACACGGTTTTCTTAAAGTCAATCCCTTTT
Unaligned ( gi|16 ): AAACCATTTTTCCATTTTTAGAAATGGTGGCTTTAACCT
Alignments
lowQualScore : 33333333 2222 22222 333 2222222222 1 4444444444444444444 1111 5555555555555555 111 1 1 4444444444444 1 333333333333 333333333333333333333333333 6666666666666666666666666666666666 11 1111 1 11 3333333333 1 11
lowQualScore : 22 44444444 33 1 1 3333 66666 111 1 1 8888888888 0 1 8 1 5 1 5 7777777777777777777 8888 1 44 6 3333333333333333 333 44 4 9 0 3 0 2222222222222 8 0 999999999999 0 1 888888888888888888888888888 6666666666666666666666666666666666 22 1 3333 7 7 1 7 3 99 1111111111 3 55 1
lowQualScore : .. ........ .. . . .... ..... ... . . .......... . . . . . . . ................... .... . .. . ................ ... .. . . . . . ............. . . ............ . . ........................... .................................. .. . .... . . . . . .. .......... . .. .
lowQualScore : 00 55555555 55 0 0 0000 00000 555 0 0 5555555555 0 0 0 0 7 7 7 7777777777777777777 0000 4 00 0 0000000000000000 444 55 2 8 0 2 0 2222222222222 8 0 000000000000 7 0 777777777777777777777777777 0000000000000000000000000000000000 77 0 7777 3 3 0 3 3 33 0000000000 3 77 0
consensus : TAACNNTGACCATTCAGGTTGGATGCGNCAANGTCGNTGATTCGGGGTTTTCTCCAAGCTTANCATNGTCANTTTCAGTCTGAACA-AGTTTTNTCA-CAATCCGATNGAA-ACTAAAGGTGCTACAGCGTTTACAAGGC-A------AA-----------TCAATCAA--GNGCCGTAACTCTGTCCATTTTG----------------GTCCGA-GAACTCGTCCGAGCTTT-CATTGTCAATAGC-ATTC-----TNAATTAGGTCANAATCTGATGAA-AACTAAA--TAT---A---GTGTTTACGAGGCAAAAATCANCA----TTTAT-AAAT-AATCAAGGG-C-ATAAC-TCTT-TCCC--T-TTTGATCCGGTA---CCA--GTTCAATAACTCGTCTGAGCTTTCATGGNCAATACCACAGTTCTGACCAAATCTGATCAAGATCAGAAGGAAGNTGAAA-AGTGTCTACATTATTCACC----CA-AATCAGCGCTTTTCCATTAATCAANGGCC
Reference ( family-857 ) : TAACNNTGACCATTCAGGTTGGATGCGNCAANGTCGNTGATTCGGGGTTTTCTCCAAGCTTANCATNGTCANTTTCAGTCTGAACA-AGTTTTNTCA-CAATCCGATNGAA-ACTAAAGGTGCTACAGCGTTTACAAGGC-A------AA-----------TCAATCAA--GNGCCGTAACTCTGTCCATTTTG----------------GTCCGA-GAACTCGTCCGAGCTTT-CATTGTCAATAGC-ATTC-----TNAATTAGGTCANAATCTGATGAA-AACTAAA--TAT---A---GTGTTTACGAGGCAAAAATCANCA----TTTAT-AAAT-AATCAAGGG-C-ATAAC-TCTT-TCCC--T-TTTGATCCGGTA---CCA--GTTCAATAACTCGTCTGAGCTTTCATGGNCAATACCACAGTTCTGACCAAATCTGATCAAGATCAGAAGGAAGNTGAAA-AGTGTCTACATTATTCACC----CA-AATCAGCGCTTTTCCATTAATCAANGGCC
gi|1 : TAACGCTGACCATTCAGGTTGGATGTGACAAGGTCAATAATTCA----TTT-----AGCTTAA-ATGGTCAATT---------ATA-AGTTTTATCT-CAATCTGGTGAAA-ATTAAAAGTGCCGTAGCGTTTATAAGGC-A------AA-------------AATCA
gi|10 : ggtcctatggtattaaatatttaagcagaaatcagttccttctgatattgaattaattaaacttaaatccaattccaaagtacccacaagtcttaaaggaaactacataattttatatttgagctgaaaccatttttctactgttttgtaacagtggctgtaactttgcccatttacctcaaaaaccaatcagagaagttagaacctcatttatttcaatacataaaatttcattaaaaattctcaaaggaaactcaaaatatttagcagaaatccattttttctttttcagtaacaaagtccccatcttatttttctaacagtgatttggccctgtctcaatttacctcaaaaccaatcctaagcttctttttcatttttatatgaactaatattgacaaaatttaattcaaatatcttaaaagatgagttgaaaaccctcttgtttctattttcatttttttcaagaatcaaagtgatataacttttgtttcagaaacaagggccaA-AGTATTCTGATCAACTCGATTATA-ATCGAAGGTGCTATAACGTTTATAATGCTA------AA-----------TCAG-CAA-----CCATAACTGTGTCTATTCTG----------------GTCgc
gi|11 : tTGAAA-ACTGAAGGTACTACAGCGTTCACATGAC-A------AAAATCTGCTTTTTCAATCAATTGAGGCATAAT----TCCATTTTG----------------ATCTGA-TAAatatatagccgtttattgacaatttttttgacaaaaattagtctcaattag
gi|13 : acaatgctctgacgagaagtTCTGACAAAATTTGATCAGGATCAGAAGGGAGCTG-AA-AGTG-CCACAGTATTCATCAGTTCA-AGTCAGCA-TTTCCCATCAATCAATAGCCgatggaatatgatttacct
gi|15 : ac-CAATCTGATGGAA-ACTAAAGGTGCTACAATGTTTACAAGGC-A------AAAC---------TCAAT
gi|2 : actTAACTGTGACCATTC--------TGCTCCAATGTCGCTGATTCGGGGTTTTCTCCAAGCTT-TCATTGTCACTTTCAGTCTGAACA-AGTTTTCTCA-CAATCTGATTGAA-ATTACAGGTGCTACAGTGCTTACAAAGC-A------AA-----------TCAATCAA--ATGTCGTAACTCTGTCCATTTTG----------------GTCCAA-GAACTGTTCAGAGCATT-TATTGTCAATAGC-ATTC-----TAAATTAGGTCAAAATCTGATGAACACCTAAGTTTAC---A---GTGTCTATGAGACAAAAATAATCAATTTTTTAT-------ATCA-------ATAACATCTTGTCCA--T-TCT-ATC----------------CAATGGCT-ATCAGAGCTTTCATGGACATT--CACAATTCAGACCAAGTCTGATCAAGATCAG-AGGAAAAGGAAA-GGTGT-TACATTATTTACC----CA-AATCAGTGCTTTTCCATTTATCAAGGGCC
gi|4 : TTCAA-GAATTCATCCAAGCTTTTCATTTTCAATAACCATGC-----T--AT---GTCACAATCTGACGAG-AACTAAA--TGTGCTA---GTGTTTACAATGTAAAAATCTGCA----TTTATCAAAT-AATCAAGGG-TGATAAC-TCTT-TCCC--T-TTTGATCTGGTA---TTATGGTTCAATAACTCATCTGAGCTTTCATTGCCAATACCACAG---TGATCAAATCTGATCAAGATCTGATTAAAGGTGAAACAGTGTTTACATGA-----C----CATGATCAGCTTTTTTTCATTAAataa
gi|6 : TTTGGTCA-----TGATAAA-AACGAAA--TAT---ACAAGTGTTTGCAAGGCAACAATCAACA----TT--T-AAATCAATTAAGGGCC-ACAAC-------CCCAATAATTGACCCAATAGAGCCA--GTTCATGAACTTGTCTGAGCTAGCATGGTCAATATT-CAGTgg
gi|8 : attcttctagtcaatgtctgaccttgGACAGAA-ACTAA-GCTGTAACAGTGTTT-CA--GC-ATATTTCAA-----------TCAATAAA--GGGCCATAACTTTGTCCAATTTGCTAGTTTAAGGAACTTGTCCAAGGAACTTGTCCTAACTTT-CATCGTCAATGAC-ATTC-----TGA-------CCAAGTTTGATGAA-GAaacattccaaca
gi|9 : aattCTGA-CAGAGCTTGATCA-AAATCCAATTAAATATTAAAGGTGCTGCAATATTCATTAG-C-ATTTAC-AA-----------TCAATGAA--GTGTCGTACATCTGTCCA----------------------TCC----AACTTGTTCACGC-TT-CA-TGTCAATAGC-ATTCCGACATCAATGAAGCCACAATCTGtcc
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TGAAGGTCCTGTGGTGATGACAAGCCAGAATTTTTTCTGACTTGATTTACCTAAAAACAAATCTTAACTTTACAATCAAAATATCTAAATGTCTATTTTAAGTAACAGTGATCTTGACTTTGACATGATTTACCTCAAATCAATCCCAAGCTTTTTATCCATATTAAAAACTTAAACACCAAATTTAATCAAAATTAGTGAATCTGAAAATTATTGAGCAGAAAACATTTTTCTATTTTCAGTAAATGGTGGCCTTAACCTTGACACCATTCACATCAAAACAAATCTTATGCTTTCTTTTCACCACAAAATCTTGATGACAATGATTAATTGAGTAGAAACCTTTTCTTTTTAAGTAACAAGGGGCCTTGCCCATTTTACCCCAAAACCACCCCAAGCTTCTGTTT
Unaligned ( gi|5 ): GTCTTAACGGAAACTAAAATTATATAACAGAAACCATTTTCTGCATTATTAACCGTGAAGTTGATCCGAATTACCTCGAAACCAGTTCGACGCTTCCTTTTTCATTGTCATAGGAACCGACACACTTTTATTTAAAATATCTTACTGAGCGGAAAATTTTTTTTTTTACATTTTTTTAATCATTTGAAGTTAAGAACGTTGTTT
Unaligned ( gi|7 ): TTTAAAAACAGAATTAGTAAAAAAATATATTGCAACAAAACCATTTCTCTATTTTTAGTAACTGGTGGCCTTGACACGATTATGCTCAACAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGAAACCCAAGTTTCCTTTTAGG
Unaligned ( gi|12 ): TTAACTCAAAACCCTTCCGAAGCTTCCTTTTTACATTAGAAACCTACAAAATATTATTATAATATCTTAAAAGAAACTTATTGAGTGGAAACAATT
Unaligned ( gi|14 ): TGTTAATTTTAATAACAGTGACATTGACTTTGACACGGTTTTCTTAAAGTCAATCCCTTTT
Unaligned ( gi|16 ): AAACCATTTTTCCATTTTTAGAAATGGTGGCTTTAACCT
Alignments
lowQualScore : 33333333 2222 22222 333 2222222222 1 4444444444444444444 1111 5555555555555555 111 1 1 4444444444444 1 333333333333 333333333333333333333333333 6666666666666666666666666666666666 11 1111 1 11 3333333333 1 11
lowQualScore : 22 44444444 33 1 1 3333 66666 111 1 1 8888888888 0 1 8 1 5 1 5 7777777777777777777 8888 1 44 6 3333333333333333 333 44 4 9 0 3 0 2222222222222 8 0 999999999999 0 1 888888888888888888888888888 6666666666666666666666666666666666 22 1 3333 7 7 1 7 3 99 1111111111 3 55 1
lowQualScore : .. ........ .. . . .... ..... ... . . .......... . . . . . . . ................... .... . .. . ................ ... .. . . . . . ............. . . ............ . . ........................... .................................. .. . .... . . . . . .. .......... . .. .
lowQualScore : 00 55555555 55 0 0 0000 00000 555 0 0 5555555555 0 0 0 0 7 7 7 7777777777777777777 0000 4 00 0 0000000000000000 444 55 2 8 0 2 0 2222222222222 8 0 000000000000 7 0 777777777777777777777777777 0000000000000000000000000000000000 77 0 7777 3 3 0 3 3 33 0000000000 3 77 0
consensus : TAACNNTGACCATTCAGGTTGGATGCGNCAANGTCGNTGATTCGGGGTTTTCTCCAAGCTTANCATNGTCANTTTCAGTCTGAACA-AGTTTTNTCA-CAATCCGATNGAA-ACTAAAGGTGCTACAGCGTTTACAAGGC-A------AA-----------TCAATCAA--GNGCCGTAACTCTGTCCATTTTG----------------GTCCGA-GAACTCGTCCGAGCTTT-CATTGTCAATAGC-ATTC-----TNAATTAGGTCANAATCTGATGAA-AACTAAA--TAT---A---GTGTTTACGAGGCAAAAATCANCA----TTTAT-AAAT-AATCAAGGG-C-ATAAC-TCTT-TCCC--T-TTTGATCCGGTA---CCA--GTTCAATAACTCGTCTGAGCTTTCATGGNCAATACCACAGTTCTGACCAAATCTGATCAAGATCAGAAGGAAGNTGAAA-AGTGTCTACATTATTCACC----CA-AATCAGCGCTTTTCCATTAATCAANGGCC
Reference ( family-857 ) : TAACNNTGACCATTCAGGTTGGATGCGNCAANGTCGNTGATTCGGGGTTTTCTCCAAGCTTANCATNGTCANTTTCAGTCTGAACA-AGTTTTNTCA-CAATCCGATNGAA-ACTAAAGGTGCTACAGCGTTTACAAGGC-A------AA-----------TCAATCAA--GNGCCGTAACTCTGTCCATTTTG----------------GTCCGA-GAACTCGTCCGAGCTTT-CATTGTCAATAGC-ATTC-----TNAATTAGGTCANAATCTGATGAA-AACTAAA--TAT---A---GTGTTTACGAGGCAAAAATCANCA----TTTAT-AAAT-AATCAAGGG-C-ATAAC-TCTT-TCCC--T-TTTGATCCGGTA---CCA--GTTCAATAACTCGTCTGAGCTTTCATGGNCAATACCACAGTTCTGACCAAATCTGATCAAGATCAGAAGGAAGNTGAAA-AGTGTCTACATTATTCACC----CA-AATCAGCGCTTTTCCATTAATCAANGGCC
gi|1 : TAACGCTGACCATTCAGGTTGGATGTGACAAGGTCAATAATTCA----TTT-----AGCTTAA-ATGGTCAATT---------ATA-AGTTTTATCT-CAATCTGGTGAAA-ATTAAAAGTGCCGTAGCGTTTATAAGGC-A------AA-------------AATCA
gi|10 : ggtcctatggtattaaatatttaagcagaaatcagttccttctgatattgaattaattaaacttaaatccaattccaaagtacccacaagtcttaaaggaaactacataattttatatttgagctgaaaccatttttctactgttttgtaacagtggctgtaactttgcccatttacctcaaaaaccaatcagagaagttagaacctcatttatttcaatacataaaatttcattaaaaattctcaaaggaaactcaaaatatttagcagaaatccattttttctttttcagtaacaaagtccccatcttatttttctaacagtgatttggccctgtctcaatttacctcaaaaccaatcctaagcttctttttcatttttatatgaactaatattgacaaaatttaattcaaatatcttaaaagatgagttgaaaaccctcttgtttctattttcatttttttcaagaatcaaagtgatataacttttgtttcagaaacaagggccaA-AGTATTCTGATCAACTCGATTATA-ATCGAAGGTGCTATAACGTTTATAATGCTA------AA-----------TCAG-CAA-----CCATAACTGTGTCTATTCTG----------------GTCgc
gi|11 : tTGAAA-ACTGAAGGTACTACAGCGTTCACATGAC-A------AAAATCTGCTTTTTCAATCAATTGAGGCATAAT----TCCATTTTG----------------ATCTGA-TAAatatatagccgtttattgacaatttttttgacaaaaattagtctcaattag
gi|13 : acaatgctctgacgagaagtTCTGACAAAATTTGATCAGGATCAGAAGGGAGCTG-AA-AGTG-CCACAGTATTCATCAGTTCA-AGTCAGCA-TTTCCCATCAATCAATAGCCgatggaatatgatttacct
gi|15 : ac-CAATCTGATGGAA-ACTAAAGGTGCTACAATGTTTACAAGGC-A------AAAC---------TCAAT
gi|2 : actTAACTGTGACCATTC--------TGCTCCAATGTCGCTGATTCGGGGTTTTCTCCAAGCTT-TCATTGTCACTTTCAGTCTGAACA-AGTTTTCTCA-CAATCTGATTGAA-ATTACAGGTGCTACAGTGCTTACAAAGC-A------AA-----------TCAATCAA--ATGTCGTAACTCTGTCCATTTTG----------------GTCCAA-GAACTGTTCAGAGCATT-TATTGTCAATAGC-ATTC-----TAAATTAGGTCAAAATCTGATGAACACCTAAGTTTAC---A---GTGTCTATGAGACAAAAATAATCAATTTTTTAT-------ATCA-------ATAACATCTTGTCCA--T-TCT-ATC----------------CAATGGCT-ATCAGAGCTTTCATGGACATT--CACAATTCAGACCAAGTCTGATCAAGATCAG-AGGAAAAGGAAA-GGTGT-TACATTATTTACC----CA-AATCAGTGCTTTTCCATTTATCAAGGGCC
gi|4 : TTCAA-GAATTCATCCAAGCTTTTCATTTTCAATAACCATGC-----T--AT---GTCACAATCTGACGAG-AACTAAA--TGTGCTA---GTGTTTACAATGTAAAAATCTGCA----TTTATCAAAT-AATCAAGGG-TGATAAC-TCTT-TCCC--T-TTTGATCTGGTA---TTATGGTTCAATAACTCATCTGAGCTTTCATTGCCAATACCACAG---TGATCAAATCTGATCAAGATCTGATTAAAGGTGAAACAGTGTTTACATGA-----C----CATGATCAGCTTTTTTTCATTAAataa
gi|6 : TTTGGTCA-----TGATAAA-AACGAAA--TAT---ACAAGTGTTTGCAAGGCAACAATCAACA----TT--T-AAATCAATTAAGGGCC-ACAAC-------CCCAATAATTGACCCAATAGAGCCA--GTTCATGAACTTGTCTGAGCTAGCATGGTCAATATT-CAGTgg
gi|8 : attcttctagtcaatgtctgaccttgGACAGAA-ACTAA-GCTGTAACAGTGTTT-CA--GC-ATATTTCAA-----------TCAATAAA--GGGCCATAACTTTGTCCAATTTGCTAGTTTAAGGAACTTGTCCAAGGAACTTGTCCTAACTTT-CATCGTCAATGAC-ATTC-----TGA-------CCAAGTTTGATGAA-GAaacattccaaca
gi|9 : aattCTGA-CAGAGCTTGATCA-AAATCCAATTAAATATTAAAGGTGCTGCAATATTCATTAG-C-ATTTAC-AA-----------TCAATGAA--GTGTCGTACATCTGTCCA----------------------TCC----AACTTGTTCACGC-TT-CA-TGTCAATAGC-ATTCCGACATCAATGAAGCCACAATCTGtcc
blockSeqs : TG . TC T C GGGT CTCCA TC T C TCAGTCTGAA G C T T T A T AAAATCTGCTTTT TTGA G TC T CTAGTTTAAGGAACTT AAG CA A T T T C CGACATCAATGAA C . TGTGCTA G TTTATCAAATAATCAAGGGTG TCTTTCCCTTTTGATCTGGTATTATG CA C ACCA T A A A C TT TTTACC T GC G
blockSeqs : . C . G . T . TATTTCAA AT T TT T . AA TG T T . T . TAT A . TATACAA A TTTAAATCAATTAAGGGCC CCCAATAATTGACCCAATAGAGCCA TG T ATT . . G A . T C . TT
blockSeqs : . A . G . A . TTTACAA GG C TC A . AA TG A . . . . TGA C .
blockSeqs : . T . A . AAAC GT T . . . . .
blockSeqs : A . A . AA
blockSeqs : T . . . AA
blockSeqCons : GT**
originalCons : TAACNNTGACCATTCAGGTTGGATGCGNCAANGTCGNTGATTCGGGGTTTTCTCCAAGCTTANCATNGTCANTTTCAGTCTGAACA-AGTTTTNTCA-CAATCCGATNGAA-ACTAAAGGTGCTACAGCGTTTACAAGGC-A------AA-----------TCAATCAA--GNGCCGTAACTCTGTCCATTTTG----------------GTCCGA-GAACTCGTCCGAGCTTT-CATTGTCAATAGC-ATTC-----TNAATTAGGTCANAATCTGATGAA-AACTAAA--TAT---A---GTGTTTACGAGGCAAAAATCANCA----TTTAT-AAAT-AATCAAGGG-C-ATAAC-TCTT-TCCC--T-TTTGATCCGGTA---CCA--GTTCAATAACTCGTCTGAGCTTTCATGGNCAATACCACAGTTCTGACCAAATCTGATCAAGATCAGAAGGAAGNTGAAA-AGTGTCTACATTATTCACC----CA-AATCAGCGCTTTTCCATTAATCAANGGCC
finalCons : TAACNNTGACCATTCAGGTTGGATGCGNCAANGTCGNTGATTCGGGGTTTTCTCCAAGCTTANCATNGTCANTTTCAGTCTGAACA-AGTTTTNTCA-CAATCCGATNGAA-ACTAAAGGTGCTACAGCGTTTACAAGGC-A------AA-----------TCAATCAAGT--GCCGTAACTCTGTCCATTTTG----------------GTCCGA-GAACTCGTCCGAGCTTT-CATTGTCAATAGC-ATTC-----TNAATTAGGTCANAATCTGATGAA-AACTAAA--TAT---A---GTGTTTACGAGGCAAAAATCANCA----TTTAT-AAAT-AATCAAGGG-C-ATAAC-TCTT-TCCC--T-TTTGATCCGGTA---CCA--GTTCAATAACTCGTCTGAGCTTTCATGGNCAATACCACAGTTCTGACCAAATCTGATCAAGATCAGAAGGAAGNTGAAA-AGTGTCTACATTATTCACC----CA-AATCAGCGCTTTTCCATTAATCAANGGCC
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TGAAGGTCCTGTGGTGATGACAAGCCAGAATTTTTTCTGACTTGATTTACCTAAAAACAAATCTTAACTTTACAATCAAAATATCTAAATGTCTATTTTAAGTAACAGTGATCTTGACTTTGACATGATTTACCTCAAATCAATCCCAAGCTTTTTATCCATATTAAAAACTTAAACACCAAATTTAATCAAAATTAGTGAATCTGAAAATTATTGAGCAGAAAACATTTTTCTATTTTCAGTAAATGGTGGCCTTAACCTTGACACCATTCACATCAAAACAAATCTTATGCTTTCTTTTCACCACAAAATCTTGATGACAATGATTAATTGAGTAGAAACCTTTTCTTTTTAAGTAACAAGGGGCCTTGCCCATTTTACCCCAAAACCACCCCAAGCTTCTGTTT
Unaligned ( gi|5 ): GTCTTAACGGAAACTAAAATTATATAACAGAAACCATTTTCTGCATTATTAACCGTGAAGTTGATCCGAATTACCTCGAAACCAGTTCGACGCTTCCTTTTTCATTGTCATAGGAACCGACACACTTTTATTTAAAATATCTTACTGAGCGGAAAATTTTTTTTTTTACATTTTTTTAATCATTTGAAGTTAAGAACGTTGTTT
Unaligned ( gi|7 ): TTTAAAAACAGAATTAGTAAAAAAATATATTGCAACAAAACCATTTCTCTATTTTTAGTAACTGGTGGCCTTGACACGATTATGCTCAACAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGAAACCCAAGTTTCCTTTTAGG
Unaligned ( gi|12 ): TTAACTCAAAACCCTTCCGAAGCTTCCTTTTTACATTAGAAACCTACAAAATATTATTATAATATCTTAAAAGAAACTTATTGAGTGGAAACAATT
Unaligned ( gi|14 ): TGTTAATTTTAATAACAGTGACATTGACTTTGACACGGTTTTCTTAAAGTCAATCCCTTTT
Unaligned ( gi|16 ): AAACCATTTTTCCATTTTTAGAAATGGTGGCTTTAACCT
Alignments
lowQualScore : 33333333 2222 22222 333 2222222222 1 4444444444444444444 1111 5555555555555555 111 1 1 4444444444444 1 333333333333 333333333333333333333333333 6666666666666666666666666666666666 11 1111 1 11 3333333333 1 11
lowQualScore : 22 44444444 33 1 1 3333 66666 111 1 1 8888888888 0 1 8 1 5 1 5 7777777777777777777 9999 1 44 6 3333333333333333 333 44 4 9 0 3 0 2222222222222 8 0 999999999999 0 1 888888888888888888888888888 6666666666666666666666666666666666 22 1 3333 7 7 1 7 3 99 1111111111 3 55 1
lowQualScore : .. ........ .. . . .... ..... ... . . .......... . . . . . . . ................... .... . .. . ................ ... .. . . . . . ............. . . ............ . . ........................... .................................. .. . .... . . . . . .. .......... . .. .
lowQualScore : 00 55555555 55 0 0 0000 00000 555 0 0 5555555555 0 0 0 0 7 7 7 7777777777777777777 8888 4 00 0 0000000000000000 444 55 2 8 0 2 0 2222222222222 8 0 000000000000 7 0 777777777777777777777777777 0000000000000000000000000000000000 77 0 7777 3 3 0 3 3 33 0000000000 3 77 0
consensus : TAACNNTGACCATTCAGGTTGGATGCGNCAANGTCGNTGATTCGGGGTTTTCTCCAAGCTTANCATNGTCANTTTCAGTCTGAACA-AGTTTTNTCA-CAATCCGATNGAA-ACTAAAGGTGCTACAGCGTTTACAAGGC-A------AA-----------TCAATCAAGT--GCCGTAACTCTGTCCATTTTG----------------GTCCGA-GAACTCGTCCGAGCTTT-CATTGTCAATAGC-ATTC-----TNAATTAGGTCANAATCTGATGAA-AACTAAA--TAT---A---GTGTTTACGAGGCAAAAATCANCA----TTTAT-AAAT-AATCAAGGG-C-ATAAC-TCTT-TCCC--T-TTTGATCCGGTA---CCA--GTTCAATAACTCGTCTGAGCTTTCATGGNCAATACCACAGTTCTGACCAAATCTGATCAAGATCAGAAGGAAGNTGAAA-AGTGTCTACATTATTCACC----CA-AATCAGCGCTTTTCCATTAATCAANGGCC
Reference ( family-857 ) : TAACNNTGACCATTCAGGTTGGATGCGNCAANGTCGNTGATTCGGGGTTTTCTCCAAGCTTANCATNGTCANTTTCAGTCTGAACA-AGTTTTNTCA-CAATCCGATNGAA-ACTAAAGGTGCTACAGCGTTTACAAGGC-A------AA-----------TCAATCAAGT--GCCGTAACTCTGTCCATTTTG----------------GTCCGA-GAACTCGTCCGAGCTTT-CATTGTCAATAGC-ATTC-----TNAATTAGGTCANAATCTGATGAA-AACTAAA--TAT---A---GTGTTTACGAGGCAAAAATCANCA----TTTAT-AAAT-AATCAAGGG-C-ATAAC-TCTT-TCCC--T-TTTGATCCGGTA---CCA--GTTCAATAACTCGTCTGAGCTTTCATGGNCAATACCACAGTTCTGACCAAATCTGATCAAGATCAGAAGGAAGNTGAAA-AGTGTCTACATTATTCACC----CA-AATCAGCGCTTTTCCATTAATCAANGGCC
gi|1 : TAACGCTGACCATTCAGGTTGGATGTGACAAGGTCAATAATTCA----TTT-----AGCTTAA-ATGGTCAATT---------ATA-AGTTTTATCT-CAATCTGGTGAAA-ATTAAAAGTGCCGTAGCGTTTATAAGGC-A------AA-------------AATCA
gi|10 : ggtcctatggtattaaatatttaagcagaaatcagttccttctgatattgaattaattaaacttaaatccaattccaaagtacccacaagtcttaaaggaaactacataattttatatttgagctgaaaccatttttctactgttttgtaacagtggctgtaactttgcccatttacctcaaaaaccaatcagagaagttagaacctcatttatttcaatacataaaatttcattaaaaattctcaaaggaaactcaaaatatttagcagaaatccattttttctttttcagtaacaaagtccccatcttatttttctaacagtgatttggccctgtctcaatttacctcaaaaccaatcctaagcttctttttcatttttatatgaactaatattgacaaaatttaattcaaatatcttaaaagatgagttgaaaaccctcttgtttctattttcatttttttcaagaatcaaagtgatataacttttgtttcagaaacaagggccaA-AGTATTCTGATCAACTCGATTATA-ATCGAAGGTGCTATAACGTTTATAATGCTA------AA-----------TCAG-CAA-----CCATAACTGTGTCTATTCTG----------------GTCgc
gi|11 : tTGAAA-ACTGAAGGTACTACAGCGTTCACATGAC-A------AAAATCTGCTTTTTCAATCAATTGAGGCATAAT----TCCATTTTG----------------ATCTGA-TAAatatatagccgtttattgacaatttttttgacaaaaattagtctcaattag
gi|13 : acaatgctctgacgagaagtTCTGACAAAATTTGATCAGGATCAGAAGGGAGCTG-AA-AGTG-CCACAGTATTCATCAGTTCA-AGTCAGCA-TTTCCCATCAATCAATAGCCgatggaatatgatttacct
gi|15 : ac-CAATCTGATGGAA-ACTAAAGGTGCTACAATGTTTACAAGGC-A------AAAC---------TCAAT
gi|2 : actTAACTGTGACCATTC--------TGCTCCAATGTCGCTGATTCGGGGTTTTCTCCAAGCTT-TCATTGTCACTTTCAGTCTGAACA-AGTTTTCTCA-CAATCTGATTGAA-ATTACAGGTGCTACAGTGCTTACAAAGC-A------AA-----------TCAATCAAAT--GTCGTAACTCTGTCCATTTTG----------------GTCCAA-GAACTGTTCAGAGCATT-TATTGTCAATAGC-ATTC-----TAAATTAGGTCAAAATCTGATGAACACCTAAGTTTAC---A---GTGTCTATGAGACAAAAATAATCAATTTTTTAT-------ATCA-------ATAACATCTTGTCCA--T-TCT-ATC----------------CAATGGCT-ATCAGAGCTTTCATGGACATT--CACAATTCAGACCAAGTCTGATCAAGATCAG-AGGAAAAGGAAA-GGTGT-TACATTATTTACC----CA-AATCAGTGCTTTTCCATTTATCAAGGGCC
gi|4 : TTCAA-GAATTCATCCAAGCTTTTCATTTTCAATAACCATGC-----T--AT---GTCACAATCTGACGAG-AACTAAA--TGTGCTA---GTGTTTACAATGTAAAAATCTGCA----TTTATCAAAT-AATCAAGGG-TGATAAC-TCTT-TCCC--T-TTTGATCTGGTA---TTATGGTTCAATAACTCATCTGAGCTTTCATTGCCAATACCACAG---TGATCAAATCTGATCAAGATCTGATTAAAGGTGAAACAGTGTTTACATGA-----C----CATGATCAGCTTTTTTTCATTAAataa
gi|6 : TTTGGTCA-----TGATAAA-AACGAAA--TAT---ACAAGTGTTTGCAAGGCAACAATCAACA----TT--T-AAATCAATTAAGGGCC-ACAAC-------CCCAATAATTGACCCAATAGAGCCA--GTTCATGAACTTGTCTGAGCTAGCATGGTCAATATT-CAGTgg
gi|8 : attcttctagtcaatgtctgaccttgGACAGAA-ACTAA-GCTGTAACAGTGTTT-CA--GC-ATATTTCAA-----------TCAATAAAGG--GCCATAACTTTGTCCAATTTGCTAGTTTAAGGAACTTGTCCAAGGAACTTGTCCTAACTTT-CATCGTCAATGAC-ATTC-----TGA-------CCAAGTTTGATGAA-GAaacattccaaca
gi|9 : aattCTGA-CAGAGCTTGATCA-AAATCCAATTAAATATTAAAGGTGCTGCAATATTCATTAG-C-ATTTAC-AA-----------TCAATGAAGT--GTCGTACATCTGTCCA----------------------TCC----AACTTGTTCACGC-TT-CA-TGTCAATAGC-ATTCCGACATCAATGAAGCCACAATCTGtcc
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TGAAGGTCCTGTGGTGATGACAAGCCAGAATTTTTTCTGACTTGATTTACCTAAAAACAAATCTTAACTTTACAATCAAAATATCTAAATGTCTATTTTAAGTAACAGTGATCTTGACTTTGACATGATTTACCTCAAATCAATCCCAAGCTTTTTATCCATATTAAAAACTTAAACACCAAATTTAATCAAAATTAGTGAATCTGAAAATTATTGAGCAGAAAACATTTTTCTATTTTCAGTAAATGGTGGCCTTAACCTTGACACCATTCACATCAAAACAAATCTTATGCTTTCTTTTCACCACAAAATCTTGATGACAATGATTAATTGAGTAGAAACCTTTTCTTTTTAAGTAACAAGGGGCCTTGCCCATTTTACCCCAAAACCACCCCAAGCTTCTGTTT
Unaligned ( gi|5 ): GTCTTAACGGAAACTAAAATTATATAACAGAAACCATTTTCTGCATTATTAACCGTGAAGTTGATCCGAATTACCTCGAAACCAGTTCGACGCTTCCTTTTTCATTGTCATAGGAACCGACACACTTTTATTTAAAATATCTTACTGAGCGGAAAATTTTTTTTTTTACATTTTTTTAATCATTTGAAGTTAAGAACGTTGTTT
Unaligned ( gi|7 ): TTTAAAAACAGAATTAGTAAAAAAATATATTGCAACAAAACCATTTCTCTATTTTTAGTAACTGGTGGCCTTGACACGATTATGCTCAACAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGAAACCCAAGTTTCCTTTTAGG
Unaligned ( gi|12 ): TTAACTCAAAACCCTTCCGAAGCTTCCTTTTTACATTAGAAACCTACAAAATATTATTATAATATCTTAAAAGAAACTTATTGAGTGGAAACAATT
Unaligned ( gi|14 ): TGTTAATTTTAATAACAGTGACATTGACTTTGACACGGTTTTCTTAAAGTCAATCCCTTTT
Unaligned ( gi|16 ): AAACCATTTTTCCATTTTTAGAAATGGTGGCTTTAACCT