lowQualScore : 1
lowQualScore : 9 1 6 6 2
lowQualScore : . . . . .
lowQualScore : 6 1 0 9 0
consensus : CATTTTTAGTCCGTTTGTATATCGTTT-AAAACGCGTTTGATATTCGTTTCGTTTGCGTTCGTTTGGTGTAC-TAGAACGGATTACGGTC
Reference ( gi|4 ) : CATTTTTAGTCCGTTTGTATACCGTTT-AAAACGCGTCTGAAATTCGTTTCGTTTGCGTTCGTTTGGTGTAC-TAGAACGGATTACGGTC
gi|3 : CATTTTTAGTCCGTTTGTATAACGTTT-AAAACGCGTTTAATATTCGTTTCGTTAGCGTTCATTTGGTGTAC-TAGAACGGATTACAGTC
gi|10 : CATTTTTAGTCCATTTGTATAATGTTT-GAAACACGTTTGATATTCGTTTCGTTTGCGTTCGTTTAGTGTAC-TAGAACGGATTACGGTt
gi|16 : CATTTTTAATCCTTTTGTATAACGTTT-AGAACGCGTTTGAAATTCGTTTCGTTTGCGTTCGTTTGGTGTAC-TAGAATGGATT
gi|6 : gCATTTTTAGTCTGTTTGTATAATGTTT-AAAACGCGTTTGATATTTGATTCGTTTGTGTTCGTTTGGTGTAC-TGGAACGGATTACAGTC
gi|1 : CACTTTTAGTCGGTTTGTATCACGTTT-AAAATGCGTTTGATATTCATTTCATTTGCGTTCGTTTGGTGTAC-TAGAATGGATTACGGTC
gi|2 : gCATTTTTAGTCCATTTGTATATCGTTTTAAAACGCGTTTGATATTCGTTTCGTTTGCGTCCCTTTGGTGTAC-TTGAACAGATTGCGGTCt
gi|17 : CATTTTTAGTCCGTTTGTATATCGTTT-AAAACGCGTTTGATATTCGTTTCGTTTGCGTCCTTTTGGTGTAC-TTAAACGGAt
gi|9 : CATTTTAAGTCCATTTGTATAACGTTT-AAAACGCGTTTGATATTCGTTTCGTTTGCATTTGTTTGTTATAC-TAGAACAGATCACTGT
gi|5 : CATTTTTAATCTGTTTGTATAACGTTT-AAAACGCATTTGATATTCGTTTCTTTTGCGATCATTTGGTGTAA-TAGAACGGATAAAGGTC
gi|8 : CATTTTTAATCTGTTTGTTTAACGTTT-AAAACGCAATTGATATTCATTTAATTTGCATTCGTTTGGTGTAC-TAGAAAGGATTACGGTC
gi|7 : CATTTTTAATCTGTTTGTTTAACGTTT-AAAACGCAATTGATATTCATTTAATTTGCATTCGTTTGGTGTAC-TAGAAAGGATTACGGTC
gi|13 : CATTTTTAGTC----TGTATGATGTTT-AAAACTCGGTTGATATTCGTTTAGTTAGCGTTCGTTTGGTGTAC-TAGAACAGATTACGGTC
gi|11 : CATTTTTAGTTTGTTTGTATAACGTTT-AATACACGTTTGTTAT-CATTTCGTTTGCATTCATTTGGTGTAC-TTGAACAGATTATGGT
gi|15 : CATTTTTAGTCCGTTTGTAAAACATTT-AAAATGGGTTTGATA-----TTCGTTTGCGTTCATTTGGAG-ACATAAAACGGATTACGGTC
gi|27 : CATTTTTAGTCTGTTTGTATATCGTTT-AAAACGCGTTTGATATTCGTTTCGTTTGCGT
gi|21 : CATTTTTAGTCCATTTGTATATCGTTT-AGAACGCGTTTGATATTCGTTTCGTTTGCGTCCG
gi|30 : gCATTTTTAGTCCGTTTGTATATCGTTT-AAAATGCGTTTGATATTCGTTTCGTTTGC
gi|22 : CATTTTTAGTCTGTTTGTATATCGTTT-AAAACTCGTTTGATATTCGTTTCGTTTGCGT
gi|28 : gCATTTTTAGTCCGTTTCTATATCGTTT-AAAACGCGTTTGGTATTCGTTTCGTTTGCG
gi|29 : gCATTTTTAATCCGTTTGTATATCGTTT-AAAACGCATTTGATATTCGTTTCGTTTGC
gi|32 : gCAGTTTTAGTCCGTTTGTATATCGTTT-AAAACACGTTTGATATTCGTTTCGTTTGC
gi|26 : CATTTTTAGTCCATTTGTATATCGTTT-AAAACGCGTTTGATATTCGTTTCATTTGGGT
gi|25 : CATTTTTAGTCTGTTTGTATATCGTTT-AAAACACGTTTGATATTTGTTCCGTTTGCGT
gi|37 : CATTTTTAGTCCGTTTGTATATCGTTT-AAAATGCGTTTGATATTCGTTTCGT
gi|36 : gCATTTTTAGTCCGTTTGTATATCGTTT-AAACCGCGTTTGATATTCGTTTCGT
gi|18 : gCATTTTTAATCCATTTGTATAACGATT-AAAATGCTTTTGATATTCGT----------TCCGTTCGGTGTAC-TAGAATTGATTATGGT
gi|33 : gCATTTTTAGTCCCTTTGTATATCGTTT-AAAACGCGTTTAATATTCGTTTCATTt
gi|31 : CATTTTTAGTCCCTTTGTATATCGTTT-AAAACGCGTTTAATATTCGTTTCATTgt
gi|45 : CATTTTTAGTTCGTTTGTATATCGTTT-gtg
gi|35 : tttgATTTTTAGTCCGTTTGTATATCGTTT-AAAACGCGTTTGATATTCGTTTCGTTTGC
gi|34 : ATTTTTAGTCCGTTTGTATATCGTTT-AAAACGCGTTTGATATTCGTTTCATTTGC
gi|39 : TTTTTTGTCCGTTTGTATATCGTTT-AAAATGCGTTTGATATTCGTTTCGT
gi|12 : TTTAGTCCGTTTGTATATCGTTT-AAAACAGGTTTGATATTAGTTTTGTTTGCGTCCGTTTGGTGTAC-TTGAGCGGATTACAGTC
gi|20 : taTTAGTCCATTTGTTTTACATTT-AAAACTCACTTGA-------------TGCATTCGTTAGGTGTAC-TTGAACGGATTAAGGTC
gi|41 : TAGTCTGTTTGTATAACGTTT-AAAACGCCTTTGATATTTGtg
gi|38 : AGTCTGTTTGTATATCGTTT-AAAATGCGTTTGATATTCGTTTTGTTTGCGT
gi|19 : TCCGTTTGTATATCGTTT-AAAACGCGTTTGATATTTGTTTCGTTTGCGTTCGTTTGATGTAC-TTGAATGGATTACGGT
gi|43 : AAACGCGTTTGATATTCGTTTCTTTTGCGTCC
gi|44 : AAACATGTTTGATATTCGTTTCGTTTGCGTCC
gi|23 : AACGCGTTTGATATTCGTTCCGTTTGCGTTTGTTTGGTGTAT-TACAATGGATTACGGT
gi|24 : AACGCGTTTGATATTCGTTCCGTTTGCGATTGTTTGGTGTAT-TACAATGGATTACGGT
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): CCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAATGGTTGTTGTCATGACCCTAGTGTCAGCGGTTGTGATGAGCATGGT
Unaligned ( gi|40 ): ATCAAGTTAACATACATGTCATTGTAGATGTTACATGGTTTATATATGTA
Unaligned ( gi|42 ): TCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGC
Alignments
lowQualScore : 1 1 1
lowQualScore : . . .
lowQualScore : 7 1 9
consensus : CATTTTTAGTCCGTTTGTATATCGTTT-AAAACGCGTTTGATATTCGTTTCGTTTGCGTTCGTTTGGTGTAC-TAGAACGGATTACGGTC
Reference ( family-856 ) : CATTTTTAGTCCGTTTGTATATCGTTT-AAAACGCGTTTGATATTCGTTTCGTTTGCGTTCGTTTGGTGTAC-TAGAACGGATTACGGTC
gi|1 : CACTTTTAGTCGGTTTGTATCACGTTT-AAAATGCGTTTGATATTCATTTCATTTGCGTTCGTTTGGTGTAC-TAGAATGGATTACGGTC
gi|10 : gCATTTTTAGTCCATTTGTATAATGTTT-GAAACACGTTTGATATTCGTTTCGTTTGCGTTCGTTTAGTGTAC-TAGAACGGATTACGGTt
gi|11 : CATTTTTAGTTTGTTTGTATAACGTTT-AATACACGTTTGTTAT-CATTTCGTTTGCATTCATTTGGTGTAC-TTGAACAGATTATGGT
gi|12 : TTTAGTCCGTTTGTATATCGTTT-AAAACAGGTTTGATATTAGTTTTGTTTGCGTCCGTTTGGTGTAC-TTGAGCGGATTACAGTC
gi|13 : taCATTTTTAGTC----TGTATGATGTTT-AAAACTCGGTTGATATTCGTTTAGTTAGCGTTCGTTTGGTGTAC-TAGAACAGATTACGGTC
gi|15 : CATTTTTAGTCCGTTTGTAAAACATTT-AAAATGGGTTTGATA-----TTCGTTTGCGTTCATTTGGAG-ACATAAAACGGATTACGGTC
gi|16 : CATTTTTAATCCTTTTGTATAACGTTT-AGAACGCGTTTGAAATTCGTTTCGTTTGCGTTCGTTTGGTGTAC-TAGAATGGATT
gi|17 : gCATTTTTAGTCCGTTTGTATATCGTTT-AAAACGCGTTTGATATTCGTTTCGTTTGCGTCCTTTTGGTGTAC-TTAAACGGA
gi|18 : CATTTTTAATCCATTTGTATAACGATT-AAAATGCTTTTGATATTCGT----------TCCGTTCGGTGTAC-TAGAATTGATTATGGT
gi|19 : gTCCGTTTGTATATCGTTT-AAAACGCGTTTGATATTTGTTTCGTTTGCGTTCGTTTGATGTAC-TTGAATGGATTACGGTt
gi|2 : CATTTTTAGTCCATTTGTATATCGTTTTAAAACGCGTTTGATATTCGTTTCGTTTGCGTCCCTTTGGTGTAC-TTGAACAGATTGCGGTC
gi|20 : TTAGTCCATTTGTTTTACATTT-AAAACTCACTTGAT-------------GCATTCGTTAGGTGTAC-TTGAACGGATTAAGGTCt
gi|21 : CATTTTTAGTCCATTTGTATATCGTTT-AGAACGCGTTTGATATTCGTTTCGTTTGCGTCCGtg
gi|22 : gCATTTTTAGTCTGTTTGTATATCGTTT-AAAACTCGTTTGATATTCGTTTCGTTTGCGT
gi|23 : gAACGCGTTTGATATTCGTTCCGTTTGCGTTTGTTTGGTGTAT-TACAATGGATTACGGT
gi|24 : AACGCGTTTGATATTCGTTCCGTTTGCGATTGTTTGGTGTAT-TACAATGGATTACGGT
gi|25 : CATTTTTAGTCTGTTTGTATATCGTTT-AAAACACGTTTGATATTTGTTCCGTTTGCGT
gi|26 : CATTTTTAGTCCATTTGTATATCGTTT-AAAACGCGTTTGATATTCGTTTCATTTGGGT
gi|27 : CATTTTTAGTCTGTTTGTATATCGTTT-AAAACGCGTTTGATATTCGTTTCGTTTGCGT
gi|28 : CATTTTTAGTCCGTTTCTATATCGTTT-AAAACGCGTTTGGTATTCGTTTCGTTTGCG
gi|29 : gCATTTTTAATCCGTTTGTATATCGTTT-AAAACGCATTTGATATTCGTTTCGTTTGC
gi|3 : gCATTTTTAGTCCGTTTGTATAACGTTT-AAAACGCGTTTAATATTCGTTTCGTTAGCGTTCATTTGGTGTAC-TAGAACGGATTACAGTC
gi|30 : CATTTTTAGTCCGTTTGTATATCGTTT-AAAATGCGTTTGATATTCGTTTCGTTTGCt
gi|31 : CATTTTTAGTCCCTTTGTATATCGTTT-AAAACGCGTTTAATATTCGTTTCATT
gi|32 : CAGTTTTAGTCCGTTTGTATATCGTTT-AAAACACGTTTGATATTCGTTTCGTTTGCgtg
gi|33 : CATTTTTAGTCCCTTTGTATATCGTTT-AAAACGCGTTTAATATTCGTTTCATT
gi|34 : ATTTTTAGTCCGTTTGTATATCGTTT-AAAACGCGTTTGATATTCGTTTCATTTGCgt
gi|35 : ATTTTTAGTCCGTTTGTATATCGTTT-AAAACGCGTTTGATATTCGTTTCGTTTGC
gi|36 : CATTTTTAGTCCGTTTGTATATCGTTT-AAACCGCGTTTGATATTCGTTTCGT
gi|37 : gCATTTTTAGTCCGTTTGTATATCGTTT-AAAATGCGTTTGATATTCGTTTCGT
gi|38 : gAGTCTGTTTGTATATCGTTT-AAAATGCGTTTGATATTCGTTTTGTTTGCGT
gi|39 : TTTTTTGTCCGTTTGTATATCGTTT-AAAATGCGTTTGATATTCGTTTCGT
gi|4 : CATTTTTAGTCCGTTTGTATACCGTTT-AAAACGCGTCTGAAATTCGTTTCGTTTGCGTTCGTTTGGTGTAC-TAGAACGGATTACGGTC
gi|41 : TAGTCTGTTTGTATAACGTTT-AAAACGCCTTTGATATTTG
gi|43 : AAACGCGTTTGATATTCGTTTCTTTTGCGTCC
gi|44 : AAACATGTTTGATATTCGTTTCGTTTGCGTCC
gi|45 : CATTTTTAGTTCGTTTGTATATCGTTT-
gi|5 : tttgCATTTTTAATCTGTTTGTATAACGTTT-AAAACGCATTTGATATTCGTTTCTTTTGCGATCATTTGGTGTAA-TAGAACGGATAAAGGTC
gi|6 : CATTTTTAGTCTGTTTGTATAATGTTT-AAAACGCGTTTGATATTTGATTCGTTTGTGTTCGTTTGGTGTAC-TGGAACGGATTACAGTC
gi|7 : CATTTTTAATCTGTTTGTTTAACGTTT-AAAACGCAATTGATATTCATTTAATTTGCATTCGTTTGGTGTAC-TAGAAAGGATTACGGTC
gi|8 : CATTTTTAATCTGTTTGTTTAACGTTT-AAAACGCAATTGATATTCATTTAATTTGCATTCGTTTGGTGTAC-TAGAAAGGATTACGGTC
gi|9 : CATTTTAAGTCCATTTGTATAACGTTT-AAAACGCGTTTGATATTCGTTTCGTTTGCATTTGTTTGTTATAC-TAGAACAGATCACTGT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): CCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAATGGTTGTTGTCATGACCCTAGTGTCAGCGGTTGTGATGAGCATGGT
Unaligned ( gi|40 ): ATCAAGTTAACATACATGTCATTGTAGATGTTACATGGTTTATATATGTA
Unaligned ( gi|42 ): TCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGC
Alignments
lowQualScore : 1 1 1
lowQualScore : . . .
lowQualScore : 7 1 9
consensus : CATTTTTAGTCCGTTTGTATATCGTTT-AAAACGCGTTTGATATTCGTTTCGTTTGCGTTCGTTTGGTGTAC-TAGAACGGATTACGGTC
Reference ( family-856 ) : CATTTTTAGTCCGTTTGTATATCGTTT-AAAACGCGTTTGATATTCGTTTCGTTTGCGTTCGTTTGGTGTAC-TAGAACGGATTACGGTC
gi|1 : CACTTTTAGTCGGTTTGTATCACGTTT-AAAATGCGTTTGATATTCATTTCATTTGCGTTCGTTTGGTGTAC-TAGAATGGATTACGGTC
gi|10 : gCATTTTTAGTCCATTTGTATAATGTTT-GAAACACGTTTGATATTCGTTTCGTTTGCGTTCGTTTAGTGTAC-TAGAACGGATTACGGTt
gi|11 : CATTTTTAGTTTGTTTGTATAACGTTT-AATACACGTTTGTTAT-CATTTCGTTTGCATTCATTTGGTGTAC-TTGAACAGATTATGGT
gi|12 : TTTAGTCCGTTTGTATATCGTTT-AAAACAGGTTTGATATTAGTTTTGTTTGCGTCCGTTTGGTGTAC-TTGAGCGGATTACAGTC
gi|13 : taCATTTTTAGTC----TGTATGATGTTT-AAAACTCGGTTGATATTCGTTTAGTTAGCGTTCGTTTGGTGTAC-TAGAACAGATTACGGTC
gi|15 : CATTTTTAGTCCGTTTGTAAAACATTT-AAAATGGGTTTGATA-----TTCGTTTGCGTTCATTTGGAG-ACATAAAACGGATTACGGTC
gi|16 : CATTTTTAATCCTTTTGTATAACGTTT-AGAACGCGTTTGAAATTCGTTTCGTTTGCGTTCGTTTGGTGTAC-TAGAATGGATT
gi|17 : gCATTTTTAGTCCGTTTGTATATCGTTT-AAAACGCGTTTGATATTCGTTTCGTTTGCGTCCTTTTGGTGTAC-TTAAACGGA
gi|18 : CATTTTTAATCCATTTGTATAACGATT-AAAATGCTTTTGATATTCGT----------TCCGTTCGGTGTAC-TAGAATTGATTATGGT
gi|19 : gTCCGTTTGTATATCGTTT-AAAACGCGTTTGATATTTGTTTCGTTTGCGTTCGTTTGATGTAC-TTGAATGGATTACGGTt
gi|2 : CATTTTTAGTCCATTTGTATATCGTTTTAAAACGCGTTTGATATTCGTTTCGTTTGCGTCCCTTTGGTGTAC-TTGAACAGATTGCGGTC
gi|20 : TTAGTCCATTTGTTTTACATTT-AAAACTCACTTGAT-------------GCATTCGTTAGGTGTAC-TTGAACGGATTAAGGTCt
gi|21 : CATTTTTAGTCCATTTGTATATCGTTT-AGAACGCGTTTGATATTCGTTTCGTTTGCGTCCGtg
gi|22 : gCATTTTTAGTCTGTTTGTATATCGTTT-AAAACTCGTTTGATATTCGTTTCGTTTGCGT
gi|23 : gAACGCGTTTGATATTCGTTCCGTTTGCGTTTGTTTGGTGTAT-TACAATGGATTACGGT
gi|24 : AACGCGTTTGATATTCGTTCCGTTTGCGATTGTTTGGTGTAT-TACAATGGATTACGGT
gi|25 : CATTTTTAGTCTGTTTGTATATCGTTT-AAAACACGTTTGATATTTGTTCCGTTTGCGT
gi|26 : CATTTTTAGTCCATTTGTATATCGTTT-AAAACGCGTTTGATATTCGTTTCATTTGGGT
gi|27 : CATTTTTAGTCTGTTTGTATATCGTTT-AAAACGCGTTTGATATTCGTTTCGTTTGCGT
gi|28 : CATTTTTAGTCCGTTTCTATATCGTTT-AAAACGCGTTTGGTATTCGTTTCGTTTGCG
gi|29 : gCATTTTTAATCCGTTTGTATATCGTTT-AAAACGCATTTGATATTCGTTTCGTTTGC
gi|3 : gCATTTTTAGTCCGTTTGTATAACGTTT-AAAACGCGTTTAATATTCGTTTCGTTAGCGTTCATTTGGTGTAC-TAGAACGGATTACAGTC
gi|30 : CATTTTTAGTCCGTTTGTATATCGTTT-AAAATGCGTTTGATATTCGTTTCGTTTGCt
gi|31 : CATTTTTAGTCCCTTTGTATATCGTTT-AAAACGCGTTTAATATTCGTTTCATT
gi|32 : CAGTTTTAGTCCGTTTGTATATCGTTT-AAAACACGTTTGATATTCGTTTCGTTTGCgtg
gi|33 : CATTTTTAGTCCCTTTGTATATCGTTT-AAAACGCGTTTAATATTCGTTTCATT
gi|34 : ATTTTTAGTCCGTTTGTATATCGTTT-AAAACGCGTTTGATATTCGTTTCATTTGCgt
gi|35 : ATTTTTAGTCCGTTTGTATATCGTTT-AAAACGCGTTTGATATTCGTTTCGTTTGC
gi|36 : CATTTTTAGTCCGTTTGTATATCGTTT-AAACCGCGTTTGATATTCGTTTCGT
gi|37 : gCATTTTTAGTCCGTTTGTATATCGTTT-AAAATGCGTTTGATATTCGTTTCGT
gi|38 : gAGTCTGTTTGTATATCGTTT-AAAATGCGTTTGATATTCGTTTTGTTTGCGT
gi|39 : TTTTTTGTCCGTTTGTATATCGTTT-AAAATGCGTTTGATATTCGTTTCGT
gi|4 : CATTTTTAGTCCGTTTGTATACCGTTT-AAAACGCGTCTGAAATTCGTTTCGTTTGCGTTCGTTTGGTGTAC-TAGAACGGATTACGGTC
gi|41 : TAGTCTGTTTGTATAACGTTT-AAAACGCCTTTGATATTTG
gi|43 : AAACGCGTTTGATATTCGTTTCTTTTGCGTCC
gi|44 : AAACATGTTTGATATTCGTTTCGTTTGCGTCC
gi|45 : CATTTTTAGTTCGTTTGTATATCGTTT-
gi|5 : tttgCATTTTTAATCTGTTTGTATAACGTTT-AAAACGCATTTGATATTCGTTTCTTTTGCGATCATTTGGTGTAA-TAGAACGGATAAAGGTC
gi|6 : CATTTTTAGTCTGTTTGTATAATGTTT-AAAACGCGTTTGATATTTGATTCGTTTGTGTTCGTTTGGTGTAC-TGGAACGGATTACAGTC
gi|7 : CATTTTTAATCTGTTTGTTTAACGTTT-AAAACGCAATTGATATTCATTTAATTTGCATTCGTTTGGTGTAC-TAGAAAGGATTACGGTC
gi|8 : CATTTTTAATCTGTTTGTTTAACGTTT-AAAACGCAATTGATATTCATTTAATTTGCATTCGTTTGGTGTAC-TAGAAAGGATTACGGTC
gi|9 : CATTTTAAGTCCATTTGTATAACGTTT-AAAACGCGTTTGATATTCGTTTCGTTTGCATTTGTTTGTTATAC-TAGAACAGATCACTGT
blockSeqs : A T A
blockSeqs : A . .
blockSeqs : T . .
blockSeqs : A . .
blockSeqs : A . .
blockSeqs : A . .
blockSeqs : T . .
blockSeqs : A . .
blockSeqs : T . .
blockSeqs : T . .
blockSeqs : A . .
blockSeqs : T . .
blockSeqs : T . .
blockSeqs : T . .
blockSeqs : T . .
blockSeqs : T . .
blockSeqs : T . .
blockSeqs : T . .
blockSeqs : A . .
blockSeqs : T . .
blockSeqs : T .
blockSeqs : T .
blockSeqs : T .
blockSeqs : T .
blockSeqs : T .
blockSeqs : T .
blockSeqs : T .
blockSeqs : T .
blockSeqs : T .
blockSeqs : C .
blockSeqs : A .
blockSeqs : T .
blockSeqs : A .
blockSeqs : A .
blockSeqs : A .
blockSeqs : A .
blockSeqs : A .
blockSeqCons :
originalCons : CATTTTTAGTCCGTTTGTATATCGTTT-AAAACGCGTTTGATATTCGTTTCGTTTGCGTTCGTTTGGTGTAC-TAGAACGGATTACGGTC
finalCons : CATTTTTAGTCCGTTTGTATATCGTTT-AAAACGCGTTTGATATTCGTTTCGTTTGCGTTCGTTTGGTGTAC-TAGAACGGATTACGGTC
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): CCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAATGGTTGTTGTCATGACCCTAGTGTCAGCGGTTGTGATGAGCATGGT
Unaligned ( gi|40 ): ATCAAGTTAACATACATGTCATTGTAGATGTTACATGGTTTATATATGTA
Unaligned ( gi|42 ): TCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGC
Alignments
lowQualScore : 1 1 1
lowQualScore : . . .
lowQualScore : 7 1 9
consensus : CATTTTTAGTCCGTTTGTATATCGTTT-AAAACGCGTTTGATATTCGTTTCGTTTGCGTTCGTTTGGTGTAC-TAGAACGGATTACGGTC
Reference ( family-856 ) : CATTTTTAGTCCGTTTGTATATCGTTT-AAAACGCGTTTGATATTCGTTTCGTTTGCGTTCGTTTGGTGTAC-TAGAACGGATTACGGTC
gi|1 : CACTTTTAGTCGGTTTGTATCACGTTT-AAAATGCGTTTGATATTCATTTCATTTGCGTTCGTTTGGTGTAC-TAGAATGGATTACGGTC
gi|10 : gCATTTTTAGTCCATTTGTATAATGTTT-GAAACACGTTTGATATTCGTTTCGTTTGCGTTCGTTTAGTGTAC-TAGAACGGATTACGGTt
gi|11 : CATTTTTAGTTTGTTTGTATAACGTTT-AATACACGTTTGTTAT-CATTTCGTTTGCATTCATTTGGTGTAC-TTGAACAGATTATGGT
gi|12 : TTTAGTCCGTTTGTATATCGTTT-AAAACAGGTTTGATATTAGTTTTGTTTGCGTCCGTTTGGTGTAC-TTGAGCGGATTACAGTC
gi|13 : taCATTTTTAGTC----TGTATGATGTTT-AAAACTCGGTTGATATTCGTTTAGTTAGCGTTCGTTTGGTGTAC-TAGAACAGATTACGGTC
gi|15 : CATTTTTAGTCCGTTTGTAAAACATTT-AAAATGGGTTTGATA-----TTCGTTTGCGTTCATTTGGAG-ACATAAAACGGATTACGGTC
gi|16 : CATTTTTAATCCTTTTGTATAACGTTT-AGAACGCGTTTGAAATTCGTTTCGTTTGCGTTCGTTTGGTGTAC-TAGAATGGATT
gi|17 : gCATTTTTAGTCCGTTTGTATATCGTTT-AAAACGCGTTTGATATTCGTTTCGTTTGCGTCCTTTTGGTGTAC-TTAAACGGA
gi|18 : CATTTTTAATCCATTTGTATAACGATT-AAAATGCTTTTGATATTCGT----------TCCGTTCGGTGTAC-TAGAATTGATTATGGT
gi|19 : gTCCGTTTGTATATCGTTT-AAAACGCGTTTGATATTTGTTTCGTTTGCGTTCGTTTGATGTAC-TTGAATGGATTACGGTt
gi|2 : CATTTTTAGTCCATTTGTATATCGTTTTAAAACGCGTTTGATATTCGTTTCGTTTGCGTCCCTTTGGTGTAC-TTGAACAGATTGCGGTC
gi|20 : TTAGTCCATTTGTTTTACATTT-AAAACTCACTTGAT-------------GCATTCGTTAGGTGTAC-TTGAACGGATTAAGGTCt
gi|21 : CATTTTTAGTCCATTTGTATATCGTTT-AGAACGCGTTTGATATTCGTTTCGTTTGCGTCCGtg
gi|22 : gCATTTTTAGTCTGTTTGTATATCGTTT-AAAACTCGTTTGATATTCGTTTCGTTTGCGT
gi|23 : gAACGCGTTTGATATTCGTTCCGTTTGCGTTTGTTTGGTGTAT-TACAATGGATTACGGT
gi|24 : AACGCGTTTGATATTCGTTCCGTTTGCGATTGTTTGGTGTAT-TACAATGGATTACGGT
gi|25 : CATTTTTAGTCTGTTTGTATATCGTTT-AAAACACGTTTGATATTTGTTCCGTTTGCGT
gi|26 : CATTTTTAGTCCATTTGTATATCGTTT-AAAACGCGTTTGATATTCGTTTCATTTGGGT
gi|27 : CATTTTTAGTCTGTTTGTATATCGTTT-AAAACGCGTTTGATATTCGTTTCGTTTGCGT
gi|28 : CATTTTTAGTCCGTTTCTATATCGTTT-AAAACGCGTTTGGTATTCGTTTCGTTTGCG
gi|29 : gCATTTTTAATCCGTTTGTATATCGTTT-AAAACGCATTTGATATTCGTTTCGTTTGC
gi|3 : gCATTTTTAGTCCGTTTGTATAACGTTT-AAAACGCGTTTAATATTCGTTTCGTTAGCGTTCATTTGGTGTAC-TAGAACGGATTACAGTC
gi|30 : CATTTTTAGTCCGTTTGTATATCGTTT-AAAATGCGTTTGATATTCGTTTCGTTTGCt
gi|31 : CATTTTTAGTCCCTTTGTATATCGTTT-AAAACGCGTTTAATATTCGTTTCATT
gi|32 : CAGTTTTAGTCCGTTTGTATATCGTTT-AAAACACGTTTGATATTCGTTTCGTTTGCgtg
gi|33 : CATTTTTAGTCCCTTTGTATATCGTTT-AAAACGCGTTTAATATTCGTTTCATT
gi|34 : ATTTTTAGTCCGTTTGTATATCGTTT-AAAACGCGTTTGATATTCGTTTCATTTGCgt
gi|35 : ATTTTTAGTCCGTTTGTATATCGTTT-AAAACGCGTTTGATATTCGTTTCGTTTGC
gi|36 : CATTTTTAGTCCGTTTGTATATCGTTT-AAACCGCGTTTGATATTCGTTTCGT
gi|37 : gCATTTTTAGTCCGTTTGTATATCGTTT-AAAATGCGTTTGATATTCGTTTCGT
gi|38 : gAGTCTGTTTGTATATCGTTT-AAAATGCGTTTGATATTCGTTTTGTTTGCGT
gi|39 : TTTTTTGTCCGTTTGTATATCGTTT-AAAATGCGTTTGATATTCGTTTCGT
gi|4 : CATTTTTAGTCCGTTTGTATACCGTTT-AAAACGCGTCTGAAATTCGTTTCGTTTGCGTTCGTTTGGTGTAC-TAGAACGGATTACGGTC
gi|41 : TAGTCTGTTTGTATAACGTTT-AAAACGCCTTTGATATTTG
gi|43 : AAACGCGTTTGATATTCGTTTCTTTTGCGTCC
gi|44 : AAACATGTTTGATATTCGTTTCGTTTGCGTCC
gi|45 : CATTTTTAGTTCGTTTGTATATCGTTT-
gi|5 : tttgCATTTTTAATCTGTTTGTATAACGTTT-AAAACGCATTTGATATTCGTTTCTTTTGCGATCATTTGGTGTAA-TAGAACGGATAAAGGTC
gi|6 : CATTTTTAGTCTGTTTGTATAATGTTT-AAAACGCGTTTGATATTTGATTCGTTTGTGTTCGTTTGGTGTAC-TGGAACGGATTACAGTC
gi|7 : CATTTTTAATCTGTTTGTTTAACGTTT-AAAACGCAATTGATATTCATTTAATTTGCATTCGTTTGGTGTAC-TAGAAAGGATTACGGTC
gi|8 : CATTTTTAATCTGTTTGTTTAACGTTT-AAAACGCAATTGATATTCATTTAATTTGCATTCGTTTGGTGTAC-TAGAAAGGATTACGGTC
gi|9 : CATTTTAAGTCCATTTGTATAACGTTT-AAAACGCGTTTGATATTCGTTTCGTTTGCATTTGTTTGTTATAC-TAGAACAGATCACTGT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): CCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAATGGTTGTTGTCATGACCCTAGTGTCAGCGGTTGTGATGAGCATGGT
Unaligned ( gi|40 ): ATCAAGTTAACATACATGTCATTGTAGATGTTACATGGTTTATATATGTA
Unaligned ( gi|42 ): TCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGC