lowQualScore : 11
lowQualScore : 6 2 5 333 3 2 0 3 8888 6 2 666 7777777 77 33 4 2 4
lowQualScore : . . . ... . . . . .... . . ... ....... .. .. . . .
lowQualScore : 0 5 2 555 4 0 9 9 2222 3 2 111 6666666 66 11 4 2 1
consensus : GGGTCGAAACCGAAATCGCCCGAAGGGCGAGTT-CGTTTACGAACCCGTTACGGTATCACTC---GAGCGACGTCTAGAACTCGGT-GAGAAGTGGTGCATTTT----AAAA-AAA-A---CACGACGACCTTTAACCC-------ATACGTTGCCTCGTGA-CTATTATT--CCAAATAAAATAAAACT-AACAAAATCTT-GTTTCAAAAAAATTACTGTAATAATGATATTAAAATAATTA
Reference ( gi|6 ) : GAGTCGAAACCGAAATCGCCCGAAGGGCGAGTT-CGTTTACGAACCCATTACGGTATCACTC---GAGCGACATCTAGAACTCGGT-GAGAAGTGGTGCGTTTT----AAAA-AAA-A---CACGACGACCTTTAACCC-------ATACGTTGCCTCGTGT-CTATTATT--CCAAATAAAATAAAACT-AACAAAATCTT-GTTTCAAAAAAATTACTGTAATAATGATATTAAAATAATTA
gi|5 : GGGTCGAAACCGAAATCGCCCAAAGGGCGAGTT-CGTTTACGAAATCGTTACGGTATCACTC---GAGCGACATCTAGAACTCAGT-GAGAAGTGGTGCATTTTA---AAAA-AAA-A---CACGACGACCTTTAACCC-------ATACGTTGCCTCGTGA-CTATTATT--CCAAATAAAATAAAACT-AACAAAATCTT-G-TTAAAAAAAACTACTGTAATAATGACATTAAAATAATTA
gi|12 : GGGTCGAAACCGAAATCGTCCGAAGGGCGAGTT-CGTTTACGAACCCGTTACGGTATCACTC---GAGCGACATCTAGAACTCAGT-GAGAAGTGGTGCATTTA----AAAG-AAA-A---CATGACGACCTTTAACCC-------ATACGTTGC----TGA-TTATTATT--CCAAATAAAATAAAACT-AACAAAATCTT-GTTTC-AAAGAGTTACTGTAATAATAATATTAAAATAATTA
gi|9 : GGGTCGAAACCGAACTCGCCCTAAGTGCGAGTT-CGTTTACGAACCCGTTACGGTATCACTC---GAGCGACATCTAGAATTCAGT-GAGAAGTTGTGCATTTT----GAAA-AAA-A---CACGACGACCTTTAACCC-------ATACCTTGCCTCGTGA-CTATTATT--CCAAATAAAATAAAACT-TACAAAATCTT-GTTTAAAAAAAAATACTGTAATAATAATATTTAAATAGTT
gi|4 : GGGTCGAAACAGAAATCGCCCAAAGGGCAAGTTTCGTTTACGAACCCGTTACGGTATCACTC---GAGCGATGTCTAGAATTTAGT-GAGAAGTTGTGCATTTCTAAAAAAA-AAA-A---CACGACGACTTTTAACCC-------ATACGTTGCCTCGTGA-CTATTATT--CCAAATAAAATAAAGAT-AAAAAAATCTT-GTCTCAAAAACTTTACTGTAATGATAATATTAAAATAATTA
gi|31 : GGGTCGAAACCGAAATCG--------------------------CCCATTACGGTATCACTC---GAGCGATATCTAGAACTCAGT-GAGAAATGGTGCATTTT----AAAA-AAACA---CACGACGACCTTT
gi|33 : gGGGTCGAAACCGAAATCACCCGA--------------------ACCCGTTAGGGTATCACTC---GAGCGACATCTAGAACTCAGT-GAGAAAT
gi|7 : GTCGAAATCGAAATCGCCCGAAGGACGAGTT-CGTTTACGAACCCGTTACGGTATCACTC---GAGCGACATCTAGAACTCGGT-GAGAAGTGGAGCATTTT----AAAAAAAA-A---CACGACGACCTTTAACCC-------ATACGTTGCCTCGTGA-CTATTATT--CCAAATAAAATAAAACT-AACAAAATCTT-GTTTCAAAAAAATTACTGTAATAATGATATTAAAATAATTAa
gi|8 : gGTCGAAACCGAAATCGCCCGAAGGGCGAGTT-CGTTTACGAACCCGTTACGGTATCACTC---GAGCGACATCTAGAACTCGGT-GAGAAGTGGTGCATTTT----AAAAAAAA-A---CACGACGACCTTTAACCC-------AAATGTTGCCTCGTGA-CTATTATT--CCAAATAAAATAAAACT-AACAAAATCTT-GATTCAAAAAAATTACTGTAATAATGATATTAAAATAATTA
gi|11 : GTTGAAACCGAAATCGCCCAAATGCCGAGTT-CGTTTACAAACCCGTTACGGTATCACTC---GAGCGACATCTAGAACTCAGT-GAGAAGTGGTGCATTTT----GAAA-AAA-A---CATGACCACCTTTAACCC-------ATACGTTGCCTTGTGA-CTATTATT--CCAAATAAAATAAAACT-AACAAATTTTT-GTTTCAAAAAAATTACTGTTATAATAATATTAAAATAATT
gi|30 : GTCGAAACCGAAGTCGCCCGTAGGGCGAGTT-TGTTTACGAACCCGTTACGGTATCACTC---GAGCGACATTTAGAACTCGGT-GAGAAGTGGTGCATTTT----AAAA-A
gi|22 : gGTTGAAACCGAAATCGCCCAATGAGCGAG
gi|37 : GTAGAAACCGAAATCGCCCGAAGGACGAGTT-AGTTTACGAACCCGTTAgtctagaatttgctcaagaagtggtgcgtttaaaaaaaatcatgacaacctttgactcgtacgtaacctcgtgattattattccaaataagataaagggaaacaattttgtctaaatataaatattgtgataactataataagataat
gi|10 : gTCGAAACCGAAATCGCCCGAAGGGCGAGTT-CGTTTACGAACCCGTTACGGTATCACTC---GAGCGACATCTAGAACTCGGT-GAGAAGTGGTGCATTTT----AAAAAAAA-A---CACGACGACCTTTAACCC-------AAATGTTGCCTCGTGA-CTATTATT--CCAAATAAAATAAAACT-AACAAAATCTT-GATTCAAAAAAATTACTGTAATAATGATATTAAAATAATTA
gi|9 : TCGTAAACGAACTCGCACTTAGGGCGAGTT-CGGTTTCGACCC
gi|18 : AGGTCGAAAC-CGTT-ACAAACACGTTACGGAATCACTC---GAGCGACGTCCAAAACTCAGT-GAGAAGATGTGCATTTCG---AAAA-AAA-A---CACGACAACCTTTAACCC-------ACACGTTGACTCGGGA-TTATTATT--CCAAATGAAATATAGCT-AA-ACAATATT-GTTTCAAAAAAAATATTGTAATACTTATATTAAAATacccgttacggtatcactcgagcgacatctagaattcagtgagaagttgtgcattttgaaaaaaacacgacgacctttaacccataccttgcctcgtgactattattccaaataaaataaaacttacaaaatcttgtttaaaaaaaaatactgtaataataatatttaaatagtt
gi|16 : gCGAGTT-CGTTTACAAACCCGTTACGGTATCACTC---GAGCGACATCTAGAACTCAGT-GAGAAGTGGTGCATTTT----AAAA-AAA-T---CACGACGACCTTTAACAC-------ATTCGTTGCCTCGTGA-CTATTATT--CCAAATAAAATAAAACT-AACAAAATCTT-GTTTCAAAAGAATTACTGTAATAATAATATTAAATTAATTA
gi|19 : ggggtcgaaacTT-CGTTTACGAACCCGTTACGGTATCACTC---GAGCGACATCTAGAACTCAGT-GAGAAGTGGTGCATTTT----AAAA-AAA-A---CACGACGATCTTTAACCC-------ATACGTTGCCTCGTGA-CTATTATT--CCAAATAAAATAAAACT-ACCAAAATCTT-ATTTCAAAATAATTTCTGTAATAATAATATTAAAATAATTA
gi|21 : atTTTACGAACCCGTTACGGTATCACTC---GAGCGACATCTAGAACTCAGT-GAGAAGTGGTGCATTTT----GAAA-AAA-A---CACGACGACCTTTAACCC-------ATACGTTGCTTCGTGA-TTATTATT--CCTTATAAAATAAAACT-AACAAAATCTT-GTTTTAAAAAAATTACTGTTATAATAATATTAAAATAATTA
gi|23 : ACGAACATGTTACGGTGTCGACC---GAGCGA-GTATAGAACT-------GGAGTAGTGTGTTT-----AACA-AAA-A---TACGACGACCTTTAACCTTTGACCTATAAGTCACCTCG-GTATTATTATT--CCAAATAAAAGATATTT-AA-ATAATCTTAGCT--AAAAAAA-TATTGTAATAATTATAT
gi|28 : GAACCTGTTATGGTACAACCG---GAATGA-GTACAGAACT--G--GAGAAGT-GTGTGTTTC----AAgattaa
gi|25 : caACGGTATCACTC---ATGCGACATCTCGAACTCAGT-GATAAGTAGTGCATTTT----AAAA-AAA-A---CACGACGACCTTTAACCC-------ATACGTTGCCTCGTGA-CTATTATT--CCAAATAAAATAAAACT-AACAAAATCTT-GTTTCAAAAGAATTACTTTAATAATGATATTAAAATAGTgtcacctcttatcattattccaaataaaatatagcttaacattctcgtctccaaaaaatgactgtaataataatattaaaataat
gi|27 : ACGGTATCACTC---GAGTGACGTC-------------AAAAGT-GTGATTTTC----AAAA-AAA-AT--CACGACGACCTTTGACCC-------ATACGTTACCTCGGG----ATTATTAACTAAATAAAATATAGCTAAACAAA--CTT-GTCT-AAAAAAATTGTTATA--AAT-ATATCAAAATCATT
gi|22 : ATCGCCCAATGAGCGAGGTCTAGAATTTGCTCAAGAAGTGGTGCGTTTA----AAAA-AAA-T---CATGACAACCTTTGACTC-------GTACGTAACCTCGTGA-TTATTATT--CCAAATAAGATAAAGGG-AA-ACAATTTT-GTCTAAATATAAATATTGTGATAACTATAATAAGATAAT
gi|35 : gttgaaaccgaaTTT----AAAA-AAA-AAAGCACGACGATCTTTAAACC-------ATACGTTGCCTCGTGA-CT
gi|32 : TACGTTGCCTCGTGA-CTATTATT--CCAAATAAAATAAAACT-AACAGAATCTT-GTTTCAAAAAAATTACTGTAATAATGATA
gi|28 : GTCACCTCTTAT-C-ATTATT--CCAAATAAAATATAGCTTAACAT--TCTC-GTCTCCAAAAAATGACTGTAATAATAATATTAAAATAATa
14 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|1 ): TGTGTAGCGTGAGATCCTCCAGCCCCATGAAAAATGTCAGTGCGCATGCGCATCATCATCAGCACTTCCGGTGTGATAATTGTCAGACAACAAAAAATATTGTTAAAATAAATTTTTAAAATAGTCTATCTCTGCCATTGGCACAGCTGCTCAGGTTGTGCAATGTCTTTATAATTACGATGGTATCAGCACAATGGAGCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|2 ): GGTGTAGCGTGAGATCCTTCAGCCCCATGAAAAATGTCAGTGCGCATGCGCATCATCATTAGCACTTCCGGTGTGATAATCGTCAGACAACATAAAATTTTGTTAAAATAAACTTTTAAAATAGTCTATCTCCAGCTGATCAGATTGTACAATGTCTACATAATTATGATGTTATAAGGTATCAGCACAGTAGAACGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
Unaligned ( gi|3 ): GTGTAGCGTGAGATCCTTCGGCCCCATGAAAAATGTCAGTGCGCATGCGCATCATCATTAGCACTTCCGGTGTGATAATCGTCAGACAACAAAAAATATTGTTAAAATAAACTTTTAAAATAGTCTATCTCGCCATTGGCACAGCTGCTCAGGTTGTACAATGTCTACATAATTATGATGTTATAAGGTATCAGCACAATGGAGCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|13 ): CGGTGTAGCGTGAGATCCTTAAGTCACATGAAAACTGTCAGTGCGCATGCGCATCATCATTAGCATTCCGGTGTGATAATCGTAAGACAAAAAAAAAGAAAAAATATTGTTAAAATAAACTTTTAATATAGTCTATCTCCGACACTGGCACAGCTGCTCAGGTTGTACAATATCTACATAGGATGTTATAAGGTATCAGCACAATGGAGCGT
Unaligned ( gi|14 ): ACGGTGTAGCGTGAGATCCTTCGGCCCCATGAAAAATGTCAGTGCGCATGCGCATCATCATTAGCACTTCCGGTGTGATAATCGTCAGACAACAAAAAATATTGTTAAAATAAACTTTTAAAATAGTCTATCTCGCCATTGGCACAGCTGCTCAGGTTGTACAATGTCTACATAATTATGATGTTATAAGGTATCAGCACAATGGAGCG
Unaligned ( gi|15 ): GTGTAGCGTGAGATCCTTCAGCCCCATGAAAAATGTCAGTGCGCATGCAATCATCATTAGCACTTCCGGTGTGATAATCGTCAGACAACAAAAAATATTGTTAAAATAAACTTTTAAAATAGTCTATCTCGCCATTGGCACAGCTGCTCAGGTTGTACAATGTCGACATAATTACGATGTTATAAGGTATCAGCACAATGGAGCGT
Unaligned ( gi|17 ): GTGTAGCGTGAGATCCTTCAGCCCCATGAAAAATGTCAGTGCGCATGCAATCATCATTAGCACTTCCGGTGTGATAATCGTCAGACAACAAAAAATATTGTTAAAATAAACTTTTAAAATAGTCTATCTCGCCATTGGCACAGCTGCTCAGGTTGTACAATGTCGACATAATTACGATGTTATAAGGTATCAGCACAATGGA
Unaligned ( gi|20 ): CGGTGTAGCGTGAGATCCTTCAGCCACATGAAAACTGTCAGTGCGCATGCGCATCATCATTAGCACTTCCGGTGTGATAATCGTCAGGCAACAAAAAGAGAAAAATATCGTTAAAATAAACTTTTAATATAGTCTATCTTCACCTTTGGCACAGCTGCTCAGGTTGTACAATGTCTACATAATG
Unaligned ( gi|24 ): CGGTGTAGCGTGAGATCCTTCAGTCACATGAAAACTGTCAGTGCGCATGCGCATCATCATTAGCACTTCCGGAGTGATAATCGTCAGACAACAAAAGAAGAAAAATATTTAATATAGTCTATCTCCGCCATTGGCACAGCTGCTCAGGTTGTACAATGTCTACATAAT
Unaligned ( gi|26 ): CCATGAAAACTGTCAGTGCGCATCATCATTAGCGCTTCCGGTGTGATAATCGTCAAACATTAAAAAGAGAACATTATTATTATAATAAACTTTTAATATAGTCCATCTCCGGCACTGACACAGCTGCTCTGGTTGTACAATATCTATATGATGA
Unaligned ( gi|29 ): GGTGTCGCGTGAGACACTTCAGACCCATGAAAAATGTATCGCACATGCACATTATCATTAACGTTTCCGGCGTGATAATCGTCAGCCAAAAAATAAAAATAGTCAACTTTAAATATATTTGACAT
Unaligned ( gi|34 ): GTTATAGCGCGAGATCATTCAGCCCCATGAAAACTGTTAGTGCGCATGCGCATCATCAT
Unaligned ( gi|36 ): CGGTGTAGCGAGAGATCCTTCAGCCCCATGAAAACTGTCAGTGCGCATGC
Unaligned ( gi|38 ): TTACAGATTTTTTGAAAGGTAATCTGGTAACATACTAACTT
Alignments
lowQualScore : 2 333 1 2 1 0 9999 5 2 555 6666666 2 2 2 3
lowQualScore : . ... . . . . .... . . ... ....... . . . .
lowQualScore : 5 333 4 7 9 4 8888 7 0 555 8888888 1 1 1 3
consensus : GGGTCGAAACCGAAATCGCCCGAAGGGCGAGTT-CGTTTACGAACCCGTTACGGTATCACTC---GAGCGACGTCTAGAACTCGGT-GAGAAGTGGTGCATTTT----AAAA-AAA-A---CACGACGACCTTTAACCC-------ATACGTTGCCTCGTGACTATTATTCCAAATAAAATAAAAC-T-AACAAAATCTT-GTTTCAAAAAAATTACTGTAATAATGATATTAAAATAATTA
Reference ( family-823 ) : GGGTCGAAACCGAAATCGCCCGAAGGGCGAGTT-CGTTTACGAACCCGTTACGGTATCACTC---GAGCGACGTCTAGAACTCGGT-GAGAAGTGGTGCATTTT----AAAA-AAA-A---CACGACGACCTTTAACCC-------ATACGTTGCCTCGTGACTATTATTCCAAATAAAATAAAAC-T-AACAAAATCTT-GTTTCAAAAAAATTACTGTAATAATGATATTAAAATAATTA
gi|10 : TCGAAACCGAAATCGCCCGAAGGGCGAGTT-CGTTTACGAACCCGTTACGGTATCACTC---GAGCGACATCTAGAACTCGGT-GAGAAGTGGTGCATTTT----AAAAAAAA-A---CACGACGACCTTTAACCC-------AAATGTTGCCTCGTGACTATTATTCCAAATAAAATAAAAC-T-AACAAAATCTT-GATTCAAAAAAATTACTGTAATAATGATATTAAAATAATTA
gi|11 : GTTGAAACCGAAATCGCCCAAATGCCGAGTT-CGTTTACAAACCCGTTACGGTATCACTC---GAGCGACATCTAGAACTCAGT-GAGAAGTGGTGCATTTT----GAAA-AAA-A---CATGACCACCTTTAACCC-------ATACGTTGCCTTGTGACTATTATTCCAAATAAAATAAAAC-T-AACAAATTTTT-GTTTCAAAAAAATTACTGTTATAATAATATTAAAATAATT
gi|12 : GGGTCGAAACCGAAATCGTCCGAAGGGCGAGTT-CGTTTACGAACCCGTTACGGTATCACTC---GAGCGACATCTAGAACTCAGT-GAGAAGTGGTGCATTTA----AAAG-AAA-A---CATGACGACCTTTAACCC-------ATACGTTGC----TGATTATTATTCCAAATAAAATAAAAC-T-AACAAAATCTT-GTTTC-AAAGAGTTACTGTAATAATAATATTAAAATAATTA
gi|16 : CGAGTT-CGTTTACAAACCCGTTACGGTATCACTC---GAGCGACATCTAGAACTCAGT-GAGAAGTGGTGCATTTT----AAAA-AAA-T---CACGACGACCTTTAACAC-------ATTCGTTGCCTCGTGACTATTATTCCAAATAAAATAAAAC-T-AACAAAATCTT-GTTTCAAAAGAATTACTGTAATAATAATATTAAATTAATTA
gi|18 : ggggtcgaaacAGGTCGAAAC-CGTT-ACAAACACGTTACGGAATCACTC---GAGCGACGTCCAAAACTCAGT-GAGAAGATGTGCATTTCG---AAAA-AAA-A---CACGACAACCTTTAACCC-------ACACGTTGACTCGGGATTATTATTCCAAATGAAATATAGC-T-AA-ACAATATT-GTTTCAAAAAAAATATTGTAATACTTATATTAAAAT
gi|19 : gTT-CGTTTACGAACCCGTTACGGTATCACTC---GAGCGACATCTAGAACTCAGT-GAGAAGTGGTGCATTTT----AAAA-AAA-A---CACGACGATCTTTAACCC-------ATACGTTGCCTCGTGACTATTATTCCAAATAAAATAAAAC-T-ACCAAAATCTT-ATTTCAAAATAATTTCTGTAATAATAATATTAAAATAATTA
gi|21 : atTTTACGAACCCGTTACGGTATCACTC---GAGCGACATCTAGAACTCAGT-GAGAAGTGGTGCATTTT----GAAA-AAA-A---CACGACGACCTTTAACCC-------ATACGTTGCTTCGTGATTATTATTCCTTATAAAATAAAAC-T-AACAAAATCTT-GTTTTAAAAAAATTACTGTTATAATAATATTAAAATAATTA
gi|22 : GTTGAAACCGAAATCGCCCAATGAGCGAG
gi|22 : ATCGCCCAATGAGCGAGGTCTAGAATTTGCTCAAGAAGTGGTGCGTTTA----AAAA-AAA-T---CATGACAACCTTTGACTC-------GTACGTAACCTCGTGATTATTATTCCAAATAAGATAAAGG-G-AA-ACAATTTT-GTCTAAATATAAATATTGTGATAACTATAATAAGATAATgtctagaatttgctcaagaagtggtgcgtttaaaaaaaatcatgacaacctttgactcgtacgtaacctcgtgattattattccaaataagataaagggaaacaattttgtctaaatataaatattgtgataactataataagataat
gi|23 : gttgaaaccgaaACGAACATGTTACGGTGTCGACC---GAGCGA-GTATAGAACT-------GGAGTAGTGTGTTT-----AACA-AAA-A---TACGACGACCTTTAACCTTTGACCTATAAGTCACCTCGGTATTATTATTCCAAATAAAAGATATT-T-AA-ATAATCTTAGCT--AAAAAAA-TATTGTAATAATTATAT
gi|25 : ACGGTATCACTC---ATGCGACATCTCGAACTCAGT-GATAAGTAGTGCATTTT----AAAA-AAA-A---CACGACGACCTTTAACCC-------ATACGTTGCCTCGTGACTATTATTCCAAATAAAATAAAAC-T-AACAAAATCTT-GTTTCAAAAGAATTACTTTAATAATGATATTAAAATAGTgattaa
gi|27 : ACGGTATCACTC---GAGTGACGTC-------------AAAAGT-GTG-ATTTTC---AAAA-AAA-AT--CACGACGACCTTTGACCC-------ATACGTTACCTCGGGATTATTA-ACTAAATAAAATATAGC-TAAACAAA--CTT-GTCT-AAAAAAATTGTTATA--AAT-ATATCAAAATCATT
gi|28 : GAACCTGTTATGGTACAACCG---GAATGA-GTACAGAACT--G--GAGAAGT-GTGTGTTTC----AA--------------GTC-ACCT-----------------------CTTATCATTATT---CCAAATAAAATATAGCTT-AAC--ATTCTC-GTCTCCAAAAAATGACTGTAATAATAATATTAAAATAAT
gi|30 : caGGTCGAAACCGAAGTCGCCCGTAGGGCGAGTT-TGTTTACGAACCCGTTACGGTATCACTC---GAGCGACATTTAGAACTCGGT-GAGAAGTGGTGCATTTT----AAAA-A
gi|31 : GGGTCGAAACCGAAATCGCC--------------------------CATTACGGTATCACTC---GAGCGATATCTAGAACTCAGT-GAGAAATGGTGCATTTT----AAAA-AAACA---CACGACGACCTTT
gi|32 : gTACGTTGCCTCGTGACTATTATTCCAAATAAAATAAAAC-T-AACAGAATCTT-GTTTCAAAAAAATTACTGTAATAATGATA
gi|33 : GGGTCGAAACCGAAATCACCCGAA--------------------CCCGTTAGGGTATCACTC---GAGCGACATCTAGAACTCAGT-GAGAAATa
gi|35 : TTT----AAAA-AAA-AAAGCACGACGATCTTTAAACC-------ATACGTTGCCTCGTGACTa
gi|37 : GGTAGAAACCGAAATCGCCCGAAGGACGAGTT-AGTTTACGAACCCGTTA
gi|4 : GGGTCGAAACAGAAATCGCCCAAAGGGCAAGTTTCGTTTACGAACCCGTTACGGTATCACTC---GAGCGATGTCTAGAATTTAGT-GAGAAGTTGTGCATTTCTAAAAAAA-AAA-A---CACGACGACTTTTAACCC-------ATACGTTGCCTCGTGACTATTATTCCAAATAAAATAAAGA-T-AAAAAAATCTT-GTCTCAAAAACTTTACTGTAATGATAATATTAAAATAATTA
gi|5 : GGGTCGAAACCGAAATCGCCCAAAGGGCGAGTT-CGTTTACGAAATCGTTACGGTATCACTC---GAGCGACATCTAGAACTCAGT-GAGAAGTGGTGCATTTTA---AAAA-AAA-A---CACGACGACCTTTAACCC-------ATACGTTGCCTCGTGACTATTATTCCAAATAAAATAAAAC-T-AACAAAATCTT-G-TTAAAAAAAACTACTGTAATAATGACATTAAAATAATTA
gi|6 : GAGTCGAAACCGAAATCGCCCGAAGGGCGAGTT-CGTTTACGAACCCATTACGGTATCACTC---GAGCGACATCTAGAACTCGGT-GAGAAGTGGTGCGTTTT----AAAA-AAA-A---CACGACGACCTTTAACCC-------ATACGTTGCCTCGTGTCTATTATTCCAAATAAAATAAAAC-T-AACAAAATCTT-GTTTCAAAAAAATTACTGTAATAATGATATTAAAATAATTA
gi|7 : GGTCGAAATCGAAATCGCCCGAAGGACGAGTT-CGTTTACGAACCCGTTACGGTATCACTC---GAGCGACATCTAGAACTCGGT-GAGAAGTGGAGCATTTT----AAAAAAAA-A---CACGACGACCTTTAACCC-------ATACGTTGCCTCGTGACTATTATTCCAAATAAAATAAAAC-T-AACAAAATCTT-GTTTCAAAAAAATTACTGTAATAATGATATTAAAATAATTA
gi|8 : GTCGAAACCGAAATCGCCCGAAGGGCGAGTT-CGTTTACGAACCCGTTACGGTATCACTC---GAGCGACATCTAGAACTCGGT-GAGAAGTGGTGCATTTT----AAAAAAAA-A---CACGACGACCTTTAACCC-------AAATGTTGCCTCGTGACTATTATTCCAAATAAAATAAAAC-T-AACAAAATCTT-GATTCAAAAAAATTACTGTAATAATGATATTAAAATAATTA
gi|9 : GGGTCGAAACCGAACTCGCCCTAAGTGCGAGTT-CGTTTACGAACCCGTTACGGTATCACTC---GAGCGACATCTAGAATTCAGT-GAGAAGTTGTGCATTTT----GAAA-AAA-A---CACGACGACCTTTAACCC-------ATACCTTGCCTCGTGACTATTATTCCAAATAAAATAAAAC-T-TACAAAATCTT-GTTTAAAAAAAAATACTGTAATAATAATATTTAAATAGTT
14 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): TGTGTAGCGTGAGATCCTCCAGCCCCATGAAAAATGTCAGTGCGCATGCGCATCATCATCAGCACTTCCGGTGTGATAATTGTCAGACAACAAAAAATATTGTTAAAATAAATTTTTAAAATAGTCTATCTCTGCCATTGGCACAGCTGCTCAGGTTGTGCAATGTCTTTATAATTACGATGGTATCAGCACAATGGAGCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|2 ): GGTGTAGCGTGAGATCCTTCAGCCCCATGAAAAATGTCAGTGCGCATGCGCATCATCATTAGCACTTCCGGTGTGATAATCGTCAGACAACATAAAATTTTGTTAAAATAAACTTTTAAAATAGTCTATCTCCAGCTGATCAGATTGTACAATGTCTACATAATTATGATGTTATAAGGTATCAGCACAGTAGAACGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
Unaligned ( gi|3 ): GTGTAGCGTGAGATCCTTCGGCCCCATGAAAAATGTCAGTGCGCATGCGCATCATCATTAGCACTTCCGGTGTGATAATCGTCAGACAACAAAAAATATTGTTAAAATAAACTTTTAAAATAGTCTATCTCGCCATTGGCACAGCTGCTCAGGTTGTACAATGTCTACATAATTATGATGTTATAAGGTATCAGCACAATGGAGCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|13 ): CGGTGTAGCGTGAGATCCTTAAGTCACATGAAAACTGTCAGTGCGCATGCGCATCATCATTAGCATTCCGGTGTGATAATCGTAAGACAAAAAAAAAGAAAAAATATTGTTAAAATAAACTTTTAATATAGTCTATCTCCGACACTGGCACAGCTGCTCAGGTTGTACAATATCTACATAGGATGTTATAAGGTATCAGCACAATGGAGCGT
Unaligned ( gi|14 ): ACGGTGTAGCGTGAGATCCTTCGGCCCCATGAAAAATGTCAGTGCGCATGCGCATCATCATTAGCACTTCCGGTGTGATAATCGTCAGACAACAAAAAATATTGTTAAAATAAACTTTTAAAATAGTCTATCTCGCCATTGGCACAGCTGCTCAGGTTGTACAATGTCTACATAATTATGATGTTATAAGGTATCAGCACAATGGAGCG
Unaligned ( gi|15 ): GTGTAGCGTGAGATCCTTCAGCCCCATGAAAAATGTCAGTGCGCATGCAATCATCATTAGCACTTCCGGTGTGATAATCGTCAGACAACAAAAAATATTGTTAAAATAAACTTTTAAAATAGTCTATCTCGCCATTGGCACAGCTGCTCAGGTTGTACAATGTCGACATAATTACGATGTTATAAGGTATCAGCACAATGGAGCGT
Unaligned ( gi|17 ): GTGTAGCGTGAGATCCTTCAGCCCCATGAAAAATGTCAGTGCGCATGCAATCATCATTAGCACTTCCGGTGTGATAATCGTCAGACAACAAAAAATATTGTTAAAATAAACTTTTAAAATAGTCTATCTCGCCATTGGCACAGCTGCTCAGGTTGTACAATGTCGACATAATTACGATGTTATAAGGTATCAGCACAATGGA
Unaligned ( gi|20 ): CGGTGTAGCGTGAGATCCTTCAGCCACATGAAAACTGTCAGTGCGCATGCGCATCATCATTAGCACTTCCGGTGTGATAATCGTCAGGCAACAAAAAGAGAAAAATATCGTTAAAATAAACTTTTAATATAGTCTATCTTCACCTTTGGCACAGCTGCTCAGGTTGTACAATGTCTACATAATG
Unaligned ( gi|24 ): CGGTGTAGCGTGAGATCCTTCAGTCACATGAAAACTGTCAGTGCGCATGCGCATCATCATTAGCACTTCCGGAGTGATAATCGTCAGACAACAAAAGAAGAAAAATATTTAATATAGTCTATCTCCGCCATTGGCACAGCTGCTCAGGTTGTACAATGTCTACATAAT
Unaligned ( gi|26 ): CCATGAAAACTGTCAGTGCGCATCATCATTAGCGCTTCCGGTGTGATAATCGTCAAACATTAAAAAGAGAACATTATTATTATAATAAACTTTTAATATAGTCCATCTCCGGCACTGACACAGCTGCTCTGGTTGTACAATATCTATATGATGA
Unaligned ( gi|29 ): GGTGTCGCGTGAGACACTTCAGACCCATGAAAAATGTATCGCACATGCACATTATCATTAACGTTTCCGGCGTGATAATCGTCAGCCAAAAAATAAAAATAGTCAACTTTAAATATATTTGACAT
Unaligned ( gi|34 ): GTTATAGCGCGAGATCATTCAGCCCCATGAAAACTGTTAGTGCGCATGCGCATCATCAT
Unaligned ( gi|36 ): CGGTGTAGCGAGAGATCCTTCAGCCCCATGAAAACTGTCAGTGCGCATGC
Unaligned ( gi|38 ): TTACAGATTTTTTGAAAGGTAATCTGGTAACATACTAACTT
Alignments
lowQualScore : 2 333 1 2 1 0 9999 5 2 555 6666666 2 2 2 3
lowQualScore : . ... . . . . .... . . ... ....... . . . .
lowQualScore : 5 333 4 7 9 4 8888 7 0 555 8888888 1 1 1 3
consensus : GGGTCGAAACCGAAATCGCCCGAAGGGCGAGTT-CGTTTACGAACCCGTTACGGTATCACTC---GAGCGACGTCTAGAACTCGGT-GAGAAGTGGTGCATTTT----AAAA-AAA-A---CACGACGACCTTTAACCC-------ATACGTTGCCTCGTGACTATTATTCCAAATAAAATAAAAC-T-AACAAAATCTT-GTTTCAAAAAAATTACTGTAATAATGATATTAAAATAATTA
Reference ( family-823 ) : GGGTCGAAACCGAAATCGCCCGAAGGGCGAGTT-CGTTTACGAACCCGTTACGGTATCACTC---GAGCGACGTCTAGAACTCGGT-GAGAAGTGGTGCATTTT----AAAA-AAA-A---CACGACGACCTTTAACCC-------ATACGTTGCCTCGTGACTATTATTCCAAATAAAATAAAAC-T-AACAAAATCTT-GTTTCAAAAAAATTACTGTAATAATGATATTAAAATAATTA
gi|10 : TCGAAACCGAAATCGCCCGAAGGGCGAGTT-CGTTTACGAACCCGTTACGGTATCACTC---GAGCGACATCTAGAACTCGGT-GAGAAGTGGTGCATTTT----AAAAAAAA-A---CACGACGACCTTTAACCC-------AAATGTTGCCTCGTGACTATTATTCCAAATAAAATAAAAC-T-AACAAAATCTT-GATTCAAAAAAATTACTGTAATAATGATATTAAAATAATTA
gi|11 : GTTGAAACCGAAATCGCCCAAATGCCGAGTT-CGTTTACAAACCCGTTACGGTATCACTC---GAGCGACATCTAGAACTCAGT-GAGAAGTGGTGCATTTT----GAAA-AAA-A---CATGACCACCTTTAACCC-------ATACGTTGCCTTGTGACTATTATTCCAAATAAAATAAAAC-T-AACAAATTTTT-GTTTCAAAAAAATTACTGTTATAATAATATTAAAATAATT
gi|12 : GGGTCGAAACCGAAATCGTCCGAAGGGCGAGTT-CGTTTACGAACCCGTTACGGTATCACTC---GAGCGACATCTAGAACTCAGT-GAGAAGTGGTGCATTTA----AAAG-AAA-A---CATGACGACCTTTAACCC-------ATACGTTGC----TGATTATTATTCCAAATAAAATAAAAC-T-AACAAAATCTT-GTTTC-AAAGAGTTACTGTAATAATAATATTAAAATAATTA
gi|16 : CGAGTT-CGTTTACAAACCCGTTACGGTATCACTC---GAGCGACATCTAGAACTCAGT-GAGAAGTGGTGCATTTT----AAAA-AAA-T---CACGACGACCTTTAACAC-------ATTCGTTGCCTCGTGACTATTATTCCAAATAAAATAAAAC-T-AACAAAATCTT-GTTTCAAAAGAATTACTGTAATAATAATATTAAATTAATTA
gi|18 : ggggtcgaaacAGGTCGAAAC-CGTT-ACAAACACGTTACGGAATCACTC---GAGCGACGTCCAAAACTCAGT-GAGAAGATGTGCATTTCG---AAAA-AAA-A---CACGACAACCTTTAACCC-------ACACGTTGACTCGGGATTATTATTCCAAATGAAATATAGC-T-AA-ACAATATT-GTTTCAAAAAAAATATTGTAATACTTATATTAAAAT
gi|19 : gTT-CGTTTACGAACCCGTTACGGTATCACTC---GAGCGACATCTAGAACTCAGT-GAGAAGTGGTGCATTTT----AAAA-AAA-A---CACGACGATCTTTAACCC-------ATACGTTGCCTCGTGACTATTATTCCAAATAAAATAAAAC-T-ACCAAAATCTT-ATTTCAAAATAATTTCTGTAATAATAATATTAAAATAATTA
gi|21 : atTTTACGAACCCGTTACGGTATCACTC---GAGCGACATCTAGAACTCAGT-GAGAAGTGGTGCATTTT----GAAA-AAA-A---CACGACGACCTTTAACCC-------ATACGTTGCTTCGTGATTATTATTCCTTATAAAATAAAAC-T-AACAAAATCTT-GTTTTAAAAAAATTACTGTTATAATAATATTAAAATAATTA
gi|22 : GTTGAAACCGAAATCGCCCAATGAGCGAG
gi|22 : ATCGCCCAATGAGCGAGGTCTAGAATTTGCTCAAGAAGTGGTGCGTTTA----AAAA-AAA-T---CATGACAACCTTTGACTC-------GTACGTAACCTCGTGATTATTATTCCAAATAAGATAAAGG-G-AA-ACAATTTT-GTCTAAATATAAATATTGTGATAACTATAATAAGATAATgtctagaatttgctcaagaagtggtgcgtttaaaaaaaatcatgacaacctttgactcgtacgtaacctcgtgattattattccaaataagataaagggaaacaattttgtctaaatataaatattgtgataactataataagataat
gi|23 : gttgaaaccgaaACGAACATGTTACGGTGTCGACC---GAGCGA-GTATAGAACT-------GGAGTAGTGTGTTT-----AACA-AAA-A---TACGACGACCTTTAACCTTTGACCTATAAGTCACCTCGGTATTATTATTCCAAATAAAAGATATT-T-AA-ATAATCTTAGCT--AAAAAAA-TATTGTAATAATTATAT
gi|25 : ACGGTATCACTC---ATGCGACATCTCGAACTCAGT-GATAAGTAGTGCATTTT----AAAA-AAA-A---CACGACGACCTTTAACCC-------ATACGTTGCCTCGTGACTATTATTCCAAATAAAATAAAAC-T-AACAAAATCTT-GTTTCAAAAGAATTACTTTAATAATGATATTAAAATAGTgattaa
gi|27 : ACGGTATCACTC---GAGTGACGTC-------------AAAAGT-GTG-ATTTTC---AAAA-AAA-AT--CACGACGACCTTTGACCC-------ATACGTTACCTCGGGATTATTA-ACTAAATAAAATATAGC-TAAACAAA--CTT-GTCT-AAAAAAATTGTTATA--AAT-ATATCAAAATCATT
gi|28 : GAACCTGTTATGGTACAACCG---GAATGA-GTACAGAACT--G--GAGAAGT-GTGTGTTTC----AA--------------GTC-ACCT-----------------------CTTATCATTATT---CCAAATAAAATATAGCTT-AAC--ATTCTC-GTCTCCAAAAAATGACTGTAATAATAATATTAAAATAAT
gi|30 : caGGTCGAAACCGAAGTCGCCCGTAGGGCGAGTT-TGTTTACGAACCCGTTACGGTATCACTC---GAGCGACATTTAGAACTCGGT-GAGAAGTGGTGCATTTT----AAAA-A
gi|31 : GGGTCGAAACCGAAATCGCC--------------------------CATTACGGTATCACTC---GAGCGATATCTAGAACTCAGT-GAGAAATGGTGCATTTT----AAAA-AAACA---CACGACGACCTTT
gi|32 : gTACGTTGCCTCGTGACTATTATTCCAAATAAAATAAAAC-T-AACAGAATCTT-GTTTCAAAAAAATTACTGTAATAATGATA
gi|33 : GGGTCGAAACCGAAATCACCCGAA--------------------CCCGTTAGGGTATCACTC---GAGCGACATCTAGAACTCAGT-GAGAAATa
gi|35 : TTT----AAAA-AAA-AAAGCACGACGATCTTTAAACC-------ATACGTTGCCTCGTGACTa
gi|37 : GGTAGAAACCGAAATCGCCCGAAGGACGAGTT-AGTTTACGAACCCGTTA
gi|4 : GGGTCGAAACAGAAATCGCCCAAAGGGCAAGTTTCGTTTACGAACCCGTTACGGTATCACTC---GAGCGATGTCTAGAATTTAGT-GAGAAGTTGTGCATTTCTAAAAAAA-AAA-A---CACGACGACTTTTAACCC-------ATACGTTGCCTCGTGACTATTATTCCAAATAAAATAAAGA-T-AAAAAAATCTT-GTCTCAAAAACTTTACTGTAATGATAATATTAAAATAATTA
gi|5 : GGGTCGAAACCGAAATCGCCCAAAGGGCGAGTT-CGTTTACGAAATCGTTACGGTATCACTC---GAGCGACATCTAGAACTCAGT-GAGAAGTGGTGCATTTTA---AAAA-AAA-A---CACGACGACCTTTAACCC-------ATACGTTGCCTCGTGACTATTATTCCAAATAAAATAAAAC-T-AACAAAATCTT-G-TTAAAAAAAACTACTGTAATAATGACATTAAAATAATTA
gi|6 : GAGTCGAAACCGAAATCGCCCGAAGGGCGAGTT-CGTTTACGAACCCATTACGGTATCACTC---GAGCGACATCTAGAACTCGGT-GAGAAGTGGTGCGTTTT----AAAA-AAA-A---CACGACGACCTTTAACCC-------ATACGTTGCCTCGTGTCTATTATTCCAAATAAAATAAAAC-T-AACAAAATCTT-GTTTCAAAAAAATTACTGTAATAATGATATTAAAATAATTA
gi|7 : GGTCGAAATCGAAATCGCCCGAAGGACGAGTT-CGTTTACGAACCCGTTACGGTATCACTC---GAGCGACATCTAGAACTCGGT-GAGAAGTGGAGCATTTT----AAAAAAAA-A---CACGACGACCTTTAACCC-------ATACGTTGCCTCGTGACTATTATTCCAAATAAAATAAAAC-T-AACAAAATCTT-GTTTCAAAAAAATTACTGTAATAATGATATTAAAATAATTA
gi|8 : GTCGAAACCGAAATCGCCCGAAGGGCGAGTT-CGTTTACGAACCCGTTACGGTATCACTC---GAGCGACATCTAGAACTCGGT-GAGAAGTGGTGCATTTT----AAAAAAAA-A---CACGACGACCTTTAACCC-------AAATGTTGCCTCGTGACTATTATTCCAAATAAAATAAAAC-T-AACAAAATCTT-GATTCAAAAAAATTACTGTAATAATGATATTAAAATAATTA
gi|9 : GGGTCGAAACCGAACTCGCCCTAAGTGCGAGTT-CGTTTACGAACCCGTTACGGTATCACTC---GAGCGACATCTAGAATTCAGT-GAGAAGTTGTGCATTTT----GAAA-AAA-A---CACGACGACCTTTAACCC-------ATACCTTGCCTCGTGACTATTATTCCAAATAAAATAAAAC-T-TACAAAATCTT-GTTTAAAAAAAAATACTGTAATAATAATATTTAAATAGTT
blockSeqs : T AAT A A C TAAA A C AAG TTGACCT T A A A
blockSeqs : . . A A . G A . T . . . . A
blockSeqs : . . A A . C . . . . . . . A
blockSeqs : . . G A . A . . . . . . . T
blockSeqs : . . A A . . . . . . . . . A
blockSeqs : . . A A . . . . . . . . . A
blockSeqs : . . G G . . . . . . . . . T
blockSeqs : . . G A . . . . . . . . . T
blockSeqs : . . A G . . . . . . . . . G
blockSeqs : . . G A . . . . . . . . . A
blockSeqs : . . G A . . . . . . . . . G
blockSeqs : . . A A . . . . . . . . . A
blockSeqs : . . A A . . . . . . . . . G
blockSeqs : . . A G . . . . . . . . . G
blockSeqs : . . G G . . . . . . . . . G
blockSeqs : . A G . . . . . . . . . G
blockSeqs : . A A . . . . . . . . . A
blockSeqs : . A . . . . . . . . . . .
blockSeqs : . A . . . . . .
blockSeqs : . A . . . .
blockSeqCons :
originalCons : GGGTCGAAACCGAAATCGCCCGAAGGGCGAGTT-CGTTTACGAACCCGTTACGGTATCACTC---GAGCGACGTCTAGAACTCGGT-GAGAAGTGGTGCATTTT----AAAA-AAA-A---CACGACGACCTTTAACCC-------ATACGTTGCCTCGTGACTATTATTCCAAATAAAATAAAAC-T-AACAAAATCTT-GTTTCAAAAAAATTACTGTAATAATGATATTAAAATAATTA
finalCons : GGGTCGAAACCGAAATCGCCCGAAGGGCGAGTT-CGTTTACGAACCCGTTACGGTATCACTC---GAGCGACGTCTAGAACTCGGT-GAGAAGTGGTGCATTTT----AAAA-AAA-A---CACGACGACCTTTAACCC-------ATACGTTGCCTCGTGACTATTATTCCAAATAAAATAAAAC-T-AACAAAATCTT-GTTTCAAAAAAATTACTGTAATAATGATATTAAAATAATTA
14 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): TGTGTAGCGTGAGATCCTCCAGCCCCATGAAAAATGTCAGTGCGCATGCGCATCATCATCAGCACTTCCGGTGTGATAATTGTCAGACAACAAAAAATATTGTTAAAATAAATTTTTAAAATAGTCTATCTCTGCCATTGGCACAGCTGCTCAGGTTGTGCAATGTCTTTATAATTACGATGGTATCAGCACAATGGAGCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|2 ): GGTGTAGCGTGAGATCCTTCAGCCCCATGAAAAATGTCAGTGCGCATGCGCATCATCATTAGCACTTCCGGTGTGATAATCGTCAGACAACATAAAATTTTGTTAAAATAAACTTTTAAAATAGTCTATCTCCAGCTGATCAGATTGTACAATGTCTACATAATTATGATGTTATAAGGTATCAGCACAGTAGAACGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
Unaligned ( gi|3 ): GTGTAGCGTGAGATCCTTCGGCCCCATGAAAAATGTCAGTGCGCATGCGCATCATCATTAGCACTTCCGGTGTGATAATCGTCAGACAACAAAAAATATTGTTAAAATAAACTTTTAAAATAGTCTATCTCGCCATTGGCACAGCTGCTCAGGTTGTACAATGTCTACATAATTATGATGTTATAAGGTATCAGCACAATGGAGCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|13 ): CGGTGTAGCGTGAGATCCTTAAGTCACATGAAAACTGTCAGTGCGCATGCGCATCATCATTAGCATTCCGGTGTGATAATCGTAAGACAAAAAAAAAGAAAAAATATTGTTAAAATAAACTTTTAATATAGTCTATCTCCGACACTGGCACAGCTGCTCAGGTTGTACAATATCTACATAGGATGTTATAAGGTATCAGCACAATGGAGCGT
Unaligned ( gi|14 ): ACGGTGTAGCGTGAGATCCTTCGGCCCCATGAAAAATGTCAGTGCGCATGCGCATCATCATTAGCACTTCCGGTGTGATAATCGTCAGACAACAAAAAATATTGTTAAAATAAACTTTTAAAATAGTCTATCTCGCCATTGGCACAGCTGCTCAGGTTGTACAATGTCTACATAATTATGATGTTATAAGGTATCAGCACAATGGAGCG
Unaligned ( gi|15 ): GTGTAGCGTGAGATCCTTCAGCCCCATGAAAAATGTCAGTGCGCATGCAATCATCATTAGCACTTCCGGTGTGATAATCGTCAGACAACAAAAAATATTGTTAAAATAAACTTTTAAAATAGTCTATCTCGCCATTGGCACAGCTGCTCAGGTTGTACAATGTCGACATAATTACGATGTTATAAGGTATCAGCACAATGGAGCGT
Unaligned ( gi|17 ): GTGTAGCGTGAGATCCTTCAGCCCCATGAAAAATGTCAGTGCGCATGCAATCATCATTAGCACTTCCGGTGTGATAATCGTCAGACAACAAAAAATATTGTTAAAATAAACTTTTAAAATAGTCTATCTCGCCATTGGCACAGCTGCTCAGGTTGTACAATGTCGACATAATTACGATGTTATAAGGTATCAGCACAATGGA
Unaligned ( gi|20 ): CGGTGTAGCGTGAGATCCTTCAGCCACATGAAAACTGTCAGTGCGCATGCGCATCATCATTAGCACTTCCGGTGTGATAATCGTCAGGCAACAAAAAGAGAAAAATATCGTTAAAATAAACTTTTAATATAGTCTATCTTCACCTTTGGCACAGCTGCTCAGGTTGTACAATGTCTACATAATG
Unaligned ( gi|24 ): CGGTGTAGCGTGAGATCCTTCAGTCACATGAAAACTGTCAGTGCGCATGCGCATCATCATTAGCACTTCCGGAGTGATAATCGTCAGACAACAAAAGAAGAAAAATATTTAATATAGTCTATCTCCGCCATTGGCACAGCTGCTCAGGTTGTACAATGTCTACATAAT
Unaligned ( gi|26 ): CCATGAAAACTGTCAGTGCGCATCATCATTAGCGCTTCCGGTGTGATAATCGTCAAACATTAAAAAGAGAACATTATTATTATAATAAACTTTTAATATAGTCCATCTCCGGCACTGACACAGCTGCTCTGGTTGTACAATATCTATATGATGA
Unaligned ( gi|29 ): GGTGTCGCGTGAGACACTTCAGACCCATGAAAAATGTATCGCACATGCACATTATCATTAACGTTTCCGGCGTGATAATCGTCAGCCAAAAAATAAAAATAGTCAACTTTAAATATATTTGACAT
Unaligned ( gi|34 ): GTTATAGCGCGAGATCATTCAGCCCCATGAAAACTGTTAGTGCGCATGCGCATCATCAT
Unaligned ( gi|36 ): CGGTGTAGCGAGAGATCCTTCAGCCCCATGAAAACTGTCAGTGCGCATGC
Unaligned ( gi|38 ): TTACAGATTTTTTGAAAGGTAATCTGGTAACATACTAACTT
Alignments
lowQualScore : 2 333 1 2 1 0 9999 5 2 555 6666666 2 2 2 3
lowQualScore : . ... . . . . .... . . ... ....... . . . .
lowQualScore : 5 333 4 7 9 4 8888 7 0 555 8888888 1 1 1 3
consensus : GGGTCGAAACCGAAATCGCCCGAAGGGCGAGTT-CGTTTACGAACCCGTTACGGTATCACTC---GAGCGACGTCTAGAACTCGGT-GAGAAGTGGTGCATTTT----AAAA-AAA-A---CACGACGACCTTTAACCC-------ATACGTTGCCTCGTGACTATTATTCCAAATAAAATAAAAC-T-AACAAAATCTT-GTTTCAAAAAAATTACTGTAATAATGATATTAAAATAATTA
Reference ( family-823 ) : GGGTCGAAACCGAAATCGCCCGAAGGGCGAGTT-CGTTTACGAACCCGTTACGGTATCACTC---GAGCGACGTCTAGAACTCGGT-GAGAAGTGGTGCATTTT----AAAA-AAA-A---CACGACGACCTTTAACCC-------ATACGTTGCCTCGTGACTATTATTCCAAATAAAATAAAAC-T-AACAAAATCTT-GTTTCAAAAAAATTACTGTAATAATGATATTAAAATAATTA
gi|10 : TCGAAACCGAAATCGCCCGAAGGGCGAGTT-CGTTTACGAACCCGTTACGGTATCACTC---GAGCGACATCTAGAACTCGGT-GAGAAGTGGTGCATTTT----AAAAAAAA-A---CACGACGACCTTTAACCC-------AAATGTTGCCTCGTGACTATTATTCCAAATAAAATAAAAC-T-AACAAAATCTT-GATTCAAAAAAATTACTGTAATAATGATATTAAAATAATTA
gi|11 : GTTGAAACCGAAATCGCCCAAATGCCGAGTT-CGTTTACAAACCCGTTACGGTATCACTC---GAGCGACATCTAGAACTCAGT-GAGAAGTGGTGCATTTT----GAAA-AAA-A---CATGACCACCTTTAACCC-------ATACGTTGCCTTGTGACTATTATTCCAAATAAAATAAAAC-T-AACAAATTTTT-GTTTCAAAAAAATTACTGTTATAATAATATTAAAATAATT
gi|12 : GGGTCGAAACCGAAATCGTCCGAAGGGCGAGTT-CGTTTACGAACCCGTTACGGTATCACTC---GAGCGACATCTAGAACTCAGT-GAGAAGTGGTGCATTTA----AAAG-AAA-A---CATGACGACCTTTAACCC-------ATACGTTGC----TGATTATTATTCCAAATAAAATAAAAC-T-AACAAAATCTT-GTTTC-AAAGAGTTACTGTAATAATAATATTAAAATAATTA
gi|16 : CGAGTT-CGTTTACAAACCCGTTACGGTATCACTC---GAGCGACATCTAGAACTCAGT-GAGAAGTGGTGCATTTT----AAAA-AAA-T---CACGACGACCTTTAACAC-------ATTCGTTGCCTCGTGACTATTATTCCAAATAAAATAAAAC-T-AACAAAATCTT-GTTTCAAAAGAATTACTGTAATAATAATATTAAATTAATTA
gi|18 : ggggtcgaaacAGGTCGAAAC-CGTT-ACAAACACGTTACGGAATCACTC---GAGCGACGTCCAAAACTCAGT-GAGAAGATGTGCATTTCG---AAAA-AAA-A---CACGACAACCTTTAACCC-------ACACGTTGACTCGGGATTATTATTCCAAATGAAATATAGC-T-AA-ACAATATT-GTTTCAAAAAAAATATTGTAATACTTATATTAAAAT
gi|19 : gTT-CGTTTACGAACCCGTTACGGTATCACTC---GAGCGACATCTAGAACTCAGT-GAGAAGTGGTGCATTTT----AAAA-AAA-A---CACGACGATCTTTAACCC-------ATACGTTGCCTCGTGACTATTATTCCAAATAAAATAAAAC-T-ACCAAAATCTT-ATTTCAAAATAATTTCTGTAATAATAATATTAAAATAATTA
gi|21 : atTTTACGAACCCGTTACGGTATCACTC---GAGCGACATCTAGAACTCAGT-GAGAAGTGGTGCATTTT----GAAA-AAA-A---CACGACGACCTTTAACCC-------ATACGTTGCTTCGTGATTATTATTCCTTATAAAATAAAAC-T-AACAAAATCTT-GTTTTAAAAAAATTACTGTTATAATAATATTAAAATAATTA
gi|22 : GTTGAAACCGAAATCGCCCAATGAGCGAG
gi|22 : ATCGCCCAATGAGCGAGGTCTAGAATTTGCTCAAGAAGTGGTGCGTTTA----AAAA-AAA-T---CATGACAACCTTTGACTC-------GTACGTAACCTCGTGATTATTATTCCAAATAAGATAAAGG-G-AA-ACAATTTT-GTCTAAATATAAATATTGTGATAACTATAATAAGATAATgtctagaatttgctcaagaagtggtgcgtttaaaaaaaatcatgacaacctttgactcgtacgtaacctcgtgattattattccaaataagataaagggaaacaattttgtctaaatataaatattgtgataactataataagataat
gi|23 : gttgaaaccgaaACGAACATGTTACGGTGTCGACC---GAGCGA-GTATAGAACT-------GGAGTAGTGTGTTT-----AACA-AAA-A---TACGACGACCTTTAACCTTTGACCTATAAGTCACCTCGGTATTATTATTCCAAATAAAAGATATT-T-AA-ATAATCTTAGCT--AAAAAAA-TATTGTAATAATTATAT
gi|25 : ACGGTATCACTC---ATGCGACATCTCGAACTCAGT-GATAAGTAGTGCATTTT----AAAA-AAA-A---CACGACGACCTTTAACCC-------ATACGTTGCCTCGTGACTATTATTCCAAATAAAATAAAAC-T-AACAAAATCTT-GTTTCAAAAGAATTACTTTAATAATGATATTAAAATAGTgattaa
gi|27 : ACGGTATCACTC---GAGTGACGTC-------------AAAAGT-GTG-ATTTTC---AAAA-AAA-AT--CACGACGACCTTTGACCC-------ATACGTTACCTCGGGATTATTA-ACTAAATAAAATATAGC-TAAACAAA--CTT-GTCT-AAAAAAATTGTTATA--AAT-ATATCAAAATCATT
gi|28 : GAACCTGTTATGGTACAACCG---GAATGA-GTACAGAACT--G--GAGAAGT-GTGTGTTTC----AA--------------GTC-ACCT-----------------------CTTATCATTATT---CCAAATAAAATATAGCTT-AAC--ATTCTC-GTCTCCAAAAAATGACTGTAATAATAATATTAAAATAAT
gi|30 : caGGTCGAAACCGAAGTCGCCCGTAGGGCGAGTT-TGTTTACGAACCCGTTACGGTATCACTC---GAGCGACATTTAGAACTCGGT-GAGAAGTGGTGCATTTT----AAAA-A
gi|31 : GGGTCGAAACCGAAATCGCC--------------------------CATTACGGTATCACTC---GAGCGATATCTAGAACTCAGT-GAGAAATGGTGCATTTT----AAAA-AAACA---CACGACGACCTTT
gi|32 : gTACGTTGCCTCGTGACTATTATTCCAAATAAAATAAAAC-T-AACAGAATCTT-GTTTCAAAAAAATTACTGTAATAATGATA
gi|33 : GGGTCGAAACCGAAATCACCCGAA--------------------CCCGTTAGGGTATCACTC---GAGCGACATCTAGAACTCAGT-GAGAAATa
gi|35 : TTT----AAAA-AAA-AAAGCACGACGATCTTTAAACC-------ATACGTTGCCTCGTGACTa
gi|37 : GGTAGAAACCGAAATCGCCCGAAGGACGAGTT-AGTTTACGAACCCGTTA
gi|4 : GGGTCGAAACAGAAATCGCCCAAAGGGCAAGTTTCGTTTACGAACCCGTTACGGTATCACTC---GAGCGATGTCTAGAATTTAGT-GAGAAGTTGTGCATTTCTAAAAAAA-AAA-A---CACGACGACTTTTAACCC-------ATACGTTGCCTCGTGACTATTATTCCAAATAAAATAAAGA-T-AAAAAAATCTT-GTCTCAAAAACTTTACTGTAATGATAATATTAAAATAATTA
gi|5 : GGGTCGAAACCGAAATCGCCCAAAGGGCGAGTT-CGTTTACGAAATCGTTACGGTATCACTC---GAGCGACATCTAGAACTCAGT-GAGAAGTGGTGCATTTTA---AAAA-AAA-A---CACGACGACCTTTAACCC-------ATACGTTGCCTCGTGACTATTATTCCAAATAAAATAAAAC-T-AACAAAATCTT-G-TTAAAAAAAACTACTGTAATAATGACATTAAAATAATTA
gi|6 : GAGTCGAAACCGAAATCGCCCGAAGGGCGAGTT-CGTTTACGAACCCATTACGGTATCACTC---GAGCGACATCTAGAACTCGGT-GAGAAGTGGTGCGTTTT----AAAA-AAA-A---CACGACGACCTTTAACCC-------ATACGTTGCCTCGTGTCTATTATTCCAAATAAAATAAAAC-T-AACAAAATCTT-GTTTCAAAAAAATTACTGTAATAATGATATTAAAATAATTA
gi|7 : GGTCGAAATCGAAATCGCCCGAAGGACGAGTT-CGTTTACGAACCCGTTACGGTATCACTC---GAGCGACATCTAGAACTCGGT-GAGAAGTGGAGCATTTT----AAAAAAAA-A---CACGACGACCTTTAACCC-------ATACGTTGCCTCGTGACTATTATTCCAAATAAAATAAAAC-T-AACAAAATCTT-GTTTCAAAAAAATTACTGTAATAATGATATTAAAATAATTA
gi|8 : GTCGAAACCGAAATCGCCCGAAGGGCGAGTT-CGTTTACGAACCCGTTACGGTATCACTC---GAGCGACATCTAGAACTCGGT-GAGAAGTGGTGCATTTT----AAAAAAAA-A---CACGACGACCTTTAACCC-------AAATGTTGCCTCGTGACTATTATTCCAAATAAAATAAAAC-T-AACAAAATCTT-GATTCAAAAAAATTACTGTAATAATGATATTAAAATAATTA
gi|9 : GGGTCGAAACCGAACTCGCCCTAAGTGCGAGTT-CGTTTACGAACCCGTTACGGTATCACTC---GAGCGACATCTAGAATTCAGT-GAGAAGTTGTGCATTTT----GAAA-AAA-A---CACGACGACCTTTAACCC-------ATACCTTGCCTCGTGACTATTATTCCAAATAAAATAAAAC-T-TACAAAATCTT-GTTTAAAAAAAAATACTGTAATAATAATATTTAAATAGTT
14 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): TGTGTAGCGTGAGATCCTCCAGCCCCATGAAAAATGTCAGTGCGCATGCGCATCATCATCAGCACTTCCGGTGTGATAATTGTCAGACAACAAAAAATATTGTTAAAATAAATTTTTAAAATAGTCTATCTCTGCCATTGGCACAGCTGCTCAGGTTGTGCAATGTCTTTATAATTACGATGGTATCAGCACAATGGAGCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|2 ): GGTGTAGCGTGAGATCCTTCAGCCCCATGAAAAATGTCAGTGCGCATGCGCATCATCATTAGCACTTCCGGTGTGATAATCGTCAGACAACATAAAATTTTGTTAAAATAAACTTTTAAAATAGTCTATCTCCAGCTGATCAGATTGTACAATGTCTACATAATTATGATGTTATAAGGTATCAGCACAGTAGAACGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
Unaligned ( gi|3 ): GTGTAGCGTGAGATCCTTCGGCCCCATGAAAAATGTCAGTGCGCATGCGCATCATCATTAGCACTTCCGGTGTGATAATCGTCAGACAACAAAAAATATTGTTAAAATAAACTTTTAAAATAGTCTATCTCGCCATTGGCACAGCTGCTCAGGTTGTACAATGTCTACATAATTATGATGTTATAAGGTATCAGCACAATGGAGCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|13 ): CGGTGTAGCGTGAGATCCTTAAGTCACATGAAAACTGTCAGTGCGCATGCGCATCATCATTAGCATTCCGGTGTGATAATCGTAAGACAAAAAAAAAGAAAAAATATTGTTAAAATAAACTTTTAATATAGTCTATCTCCGACACTGGCACAGCTGCTCAGGTTGTACAATATCTACATAGGATGTTATAAGGTATCAGCACAATGGAGCGT
Unaligned ( gi|14 ): ACGGTGTAGCGTGAGATCCTTCGGCCCCATGAAAAATGTCAGTGCGCATGCGCATCATCATTAGCACTTCCGGTGTGATAATCGTCAGACAACAAAAAATATTGTTAAAATAAACTTTTAAAATAGTCTATCTCGCCATTGGCACAGCTGCTCAGGTTGTACAATGTCTACATAATTATGATGTTATAAGGTATCAGCACAATGGAGCG
Unaligned ( gi|15 ): GTGTAGCGTGAGATCCTTCAGCCCCATGAAAAATGTCAGTGCGCATGCAATCATCATTAGCACTTCCGGTGTGATAATCGTCAGACAACAAAAAATATTGTTAAAATAAACTTTTAAAATAGTCTATCTCGCCATTGGCACAGCTGCTCAGGTTGTACAATGTCGACATAATTACGATGTTATAAGGTATCAGCACAATGGAGCGT
Unaligned ( gi|17 ): GTGTAGCGTGAGATCCTTCAGCCCCATGAAAAATGTCAGTGCGCATGCAATCATCATTAGCACTTCCGGTGTGATAATCGTCAGACAACAAAAAATATTGTTAAAATAAACTTTTAAAATAGTCTATCTCGCCATTGGCACAGCTGCTCAGGTTGTACAATGTCGACATAATTACGATGTTATAAGGTATCAGCACAATGGA
Unaligned ( gi|20 ): CGGTGTAGCGTGAGATCCTTCAGCCACATGAAAACTGTCAGTGCGCATGCGCATCATCATTAGCACTTCCGGTGTGATAATCGTCAGGCAACAAAAAGAGAAAAATATCGTTAAAATAAACTTTTAATATAGTCTATCTTCACCTTTGGCACAGCTGCTCAGGTTGTACAATGTCTACATAATG
Unaligned ( gi|24 ): CGGTGTAGCGTGAGATCCTTCAGTCACATGAAAACTGTCAGTGCGCATGCGCATCATCATTAGCACTTCCGGAGTGATAATCGTCAGACAACAAAAGAAGAAAAATATTTAATATAGTCTATCTCCGCCATTGGCACAGCTGCTCAGGTTGTACAATGTCTACATAAT
Unaligned ( gi|26 ): CCATGAAAACTGTCAGTGCGCATCATCATTAGCGCTTCCGGTGTGATAATCGTCAAACATTAAAAAGAGAACATTATTATTATAATAAACTTTTAATATAGTCCATCTCCGGCACTGACACAGCTGCTCTGGTTGTACAATATCTATATGATGA
Unaligned ( gi|29 ): GGTGTCGCGTGAGACACTTCAGACCCATGAAAAATGTATCGCACATGCACATTATCATTAACGTTTCCGGCGTGATAATCGTCAGCCAAAAAATAAAAATAGTCAACTTTAAATATATTTGACAT
Unaligned ( gi|34 ): GTTATAGCGCGAGATCATTCAGCCCCATGAAAACTGTTAGTGCGCATGCGCATCATCAT
Unaligned ( gi|36 ): CGGTGTAGCGAGAGATCCTTCAGCCCCATGAAAACTGTCAGTGCGCATGC
Unaligned ( gi|38 ): TTACAGATTTTTTGAAAGGTAATCTGGTAACATACTAACTT