lowQualScore : 111111111111111111111111111111111111 222222222222222222222222222 2222222222222222222222222222222 222222222222222222222222222222222222
lowQualScore : 1 1 22222 222 11 1 11 55555555555555555 222222 1111 4444 1 1 000000000000000000000000000000000000 1 1 1 3333333333333 55555555555555555555555555555555 1111 1111111 2222222222 11 111 111111 1 1111 1 11 11111 7777777777 333333333333333333333333333 3333 1 111 11 5555555555555555 11111 11111111 444444444444444444444444444444444444444444 11111 1 222222 3333333 2222222 11 4444444444444444444444444444444 2 1 1 33333 22 44444444 1 22 555555555555555555 1 1 22 11 11 1 22 222222 11 55555555555 11 44444 111 44444444444 1 666666666666666666666666666666666666 1111 1 2 2
lowQualScore : 3 777 55 4 2 2 44444 2 2 2 1 555 3 44 11 8 5 11 4 66666666666666666 1 333333 0 7777 0 3 3333 0 0 88 111111111111111111111111111111111111 3 5 4 5 6 0 777 5 2 8888888888888 33333333333333333333333333333333 4 55 2222 3 7777 99999 666 55 7777 5 2 777 4 1 3 55 4 4 4 7 0 1 99999 888 5 5 4444444 4 7777777777 88 0 7 777 555555 111 1 2 3 5555 3 88 1 8 4 99999 6 9999999999 999999999999999999999999999 3 3 3 1111 5 777 6 11 1111111111111111 5 3 6 55555 44444444 7 1 66 66 666666666666666666666666666666666666666666 8 6 8 99 2 1 4 8 1 4 4 0 33 88888 6 0 2 2 888888 7 8 0000000 7 2 4 7777777 4 555 3 4 3 44 4444444444444444444444444444444 3 0 5 4 6 2 2 77777 77 3 6 6 22222222 2 5 9 4 22 4 888888888888888888 7 0 1 3 77 7 7 3 0 6 44 00 4 0 0 1 33 0 7 0 9 66 0 0 9 333333 88 0 3 3 00000000000 8 6 33 22222 777 7 6 0 33333333333 1 999999999999999999999999999999999999 4 1111 3 3 5 3 4 2 77 55 3 3 0 0 4 3 4 3 3
lowQualScore : . ... .. . . . ..... . . . . ... . .. .. . . .. . ................. . ...... . .... . . .... . . .. .................................... . . . . . . ... . . ............. ................................ . .. .... . .... ..... ... .. .... . . ... . . . .. . . . . . . ..... ... . . ....... . .......... .. . . ... ...... ... . . . .... . .. . . . ..... . .......... ........................... . . . .... . ... . .. ................ . . . ..... ........ . . .. .. .......................................... . . . .. . . . . . . . . .. ..... . . . . ...... . . ....... . . . ....... . ... . . . .. ............................... . . . . . . . ..... .. . . . ........ . . . . .. . .................. . . . . .. . . . . . .. .. . . . . .. . . . . .. . . . ...... .. . . . ........... . . .. ..... ... . . . ........... . .................................... . .... . . . . . . .. .. . . . . . . . . .
lowQualScore : 3 999 88 3 8 9 99999 0 9 9 5 333 6 66 00 0 0 00 2 00000000000000000 0 000000 8 0000 8 2 0000 5 5 00 555555555555555555555555555555555555 0 5 0 0 0 8 888 4 0 9999999999999 44444444444444444444444444444444 0 55 5555 6 7777 11111 444 00 7777 0 9 000 0 6 9 55 0 0 0 5 8 1 00000 888 0 0 4444444 8 5555555555 22 2 3 555 888888 222 5 0 5 2222 3 33 0 3 0 77777 0 0000000000 555555555555555555555555555 0 0 0 0000 0 555 0 00 0000000000000000 0 2 7 77777 77777777 7 0 33 22 888888888888888888888888888888888888888888 0 4 0 44 8 4 6 8 2 0 4 8 88 44444 6 8 0 8 888888 2 8 2222222 3 5 0 5555555 0 000 0 0 0 55 5555555555555555555555555555555 0 0 0 0 0 5 5 00000 55 0 0 0 00000000 5 0 0 7 33 7 000000000000000000 7 7 0 3 33 7 3 3 7 7 00 77 2 2 2 2 88 5 3 7 0 77 7 7 0 333333 33 7 7 7 22222222222 8 8 88 55555 555 7 7 7 33333333333 5 555555555555555555555555555555555555 0 5555 0 0 0 0 0 5 00 55 0 0 0 0 0 0 0 0 0
consensus : TTTGTGAGAGTGTTATCTTGGTATTTAGAAACAATCAT---AC-AA-AATTATTTTAAGCATAAACT-CAATACAAATTTAAATTACAATAAA-ACAATGTATT-CTAC-ATTAAA-CTGTTAAACGAGAATCCCTGAGTTTGAAACCCTTAATACAATAAGTTGCAAGTTTGTTTAAAATCGA--TT-TTTT--GTCAATATTAAGAAAGTTAATAAATTTAAACATGCTTGGATGAGTTGAATAA-----------------TATTTAGGTA------TATATAATTTTCTCAGATCATTA----TAAAATGGGCAAATAAGTATGAAAATAATATTCGTCTTCNACNTCGTTTNNGTCACAACGTCAACATTTNCTTTGATNTCTATGC--TTGATNCTGATGNCGTCCGGTTTCTACGGCTAGTTTATGTGATGATAATCGTATTTTAGCTATAGCGTTTCTATATTTTACATTTTCTAAACATAAATA---AGNAGAAGGCTCAAAT-------------GTCTGTTTTAAATGTCTGTATA--------T--ATA--TA--------------AA-GATGTACATGTGACC--ATACATTCCC-N--CCAATTTGC-AA----TG-----TA---T--ATATCTCTAAGCCTAGTCCGTAATAATGGTATGAAACAGTT----AATATTGACTGATTCNGGAAACATCCAAACGTCTGCATANCCTGCATT---AT-GTAAAATCGATCGGACTTTAAAG--GC-CCA-ATT-TTGAANATTGTGATTTTCGTCAATTTC----CCTTCTTTGACTATGTATTATTGACCGTA---G-AATACAATT-ATCTTGCTT-ATT---CCCATGTAATTTAATGAAGTATTTA-----ACAATTCTCAGATATCTTCCTATATA---AAGTGGAAATCTACCTAACTCNGAATATAAAGATNA--AGAATT-TGT--AGACGTTTNTACATTAAGCGNCTATTTACAGAACATTTTNGTACTCTGTGAATACCCTC-----TGT---GT----CGAATCCCCACNCCTCNCAACCATAGTNTAATATAGATACAACAT---ATGCGTCAAATAGGTTAAACA--TTATATG---GTA-TAGA-CTTTAATAT-TTTTTGTCAC--ATTAAA-A-AACGAACTCATCGCCCGNAANGCTTTACCAG--ATAG------CGTATTTGC--TTGCATNAATAA---NNG-ACCCNCCACTTG-ACATA-ATTATTCCTAGATAATTGAAACTGCTAACNATTTCNATCTCCTTNNCGNCGTATGTCCATTTATCATTANCACTTAATAC------CCCACCTTTNCGGAACANTAC-G-TTTTGTTTTATTAACGTTAACCGTTNAGTTCCANTCTTCGCAATNGNGNTNTAGNCTATTTAANGACGNCTGGAGTCCCTCGGCACTT---TCAGATAGCAAAANTACAGCANCGTCCGCGAAACAGCAGCAGGNAGATTNGTAGCTGTTCAACANAATACTAACCGGCACATTNATACCCTTTGTCATAGGGNGTGCATTTCAANATCGTTCA-AAAAAGNGAAAATAA-AATCGGAGAA---ATCTCCCCGTGCAATAATCCAATATCGCA-CTNAAANACATCT-GATAAAATGTTCAGTTGTTTTACACACGATTTAACCTCGTTATAC--ATGGATCGAATTAATGCGAAT-AATTTACCATC-GTACTTGATTTG--ATCAATTTAAACCANAANCNATTTCGGTCAATTAAATCATANG--CTTTTTTGAAGTCCACGA---AGCAACAGTACAANTTATTTTTATT---ACGTACANGCTNTTCAATGTTCAAAATATTGAGTTGTGTCAGTGAATTAAGGATGAATATNGCATCNNNNGTACTNTAATTGGGTTTAAANCCGAACTGAGNGNCNGTCAGNNTGTCATTTTNNGCGGNCCATTTTTTTTAANCGCTCATTNANTATAACGGTGAAAAGCNTNGCA
Reference ( gi|1 ) : TTTGTGAGAGTGTTATCTTGGTATTTATAAACAATCAT---AC-AA-AATTATTTTAAGCATAAACT-CAATACAAATTTAAATTACAATAAATACAATGTATT-CTAC-ATTAAAACAGTTAAACGAGAATCCCTGAGTTTGAAACCCTTAATACAATAAGTTGCAAGTTTGTTTAAAATCGA--TT-TGTT--GTCAATATTAAGAAGGTTAATAAATTTAAACATGCTTGGATGAGTTGAATAA-----------------TATTTAGGTA------TATATAATTTTCTCAGATCATTA----TAAAATGGGCAAATAAGTATGAAA-TGGTATTCGTCTTCGATGTCATTTAAGTCACAACATTAACATTTTCTTTGGTCTCT-TGCAATT--TTTTGATGTCGTCCTGTTTCTATAGCTAGTTTATGTGATGATAATCGTATTTTAGCTATAGTGTTTCTATATTTTACATTTTCTAAACATAAATA---AGTAGAAAGCTCAAAT-------------GTCTGTTTTAAATGTCTGTATA--------T--ATA--TA--------------AA-GATGTACATGTGACC--ATACATTCCC-T--CCAATTTGC-AA----TG-----TA---T--ATATCTCTAAGCCTAGTCCGTAATAATGGTATGAAACAGTT----AATATTGACTGATTCGGGAAACATCCAAACGTCTGCATAACCTGCATT---AT-GTAAAATCGATCGAACTTTAAAG--GC-CCA-ATT-TTGAACATTGTGATTTTCATCAATTTC----CCTTCTTTGACTATGTATTATTGACCGTA---G-AATACAATT-ATCTTGCTT-ATT---CCCATGTAATTTAATAAAGTAATTA-----ACAATTCTGAGATATCTTCCTATATA---AAGTGGAAATCGACCTAACTCAGAATATAGAGATAA--AGAATT-TGT--AGATAATTTTACATTAAGGACCCATTTGCAAAAC----TT----TCTATGAATACGTTCAATGTTGTCTAGTTTTGCGAAACCCCATACTTCACAACTATAATTTAAAACTGATAAAACAT---ATGCATCAAACAGATTAAACA--TTATATG---GTA-TAGAACTTCCATAT-TTTTTGTTAT--ATCAAA-A-AGCGAACTCATAGCTCTAAATGCTTTACCTG--AAAG------CATATTTG---TTGCATGAATAA---TAG-ACCCCCCACTTG-ACATA-ACCATTCCTAAATAGTTAAAAGTACTAACAATTTCTATCTCCTTTCCATCATATAACCATTTATCATCAGCACTTAATAC------CCCACCTTTACGGAACACTACTATTTTTGTTTTATTAACATTAACCGTTAAGTTTCTTTTTTTACAATAGGAATATAAATTATTTAAAGATTTCTGGAGTCCTTCT---CTTGTCTCCGA---CATAATTACGGCATCGTCCGC-AAACAACAACAGATATATTGATAACTGTTCAACAGAA-AT--ACCA--ACATTAACATTCT--GTT---GGAGATGCATTTCGATATCATTCAGAAAAAGAGAAAAAAA-AATCGGAGAAGTGGTCTCCCCTTGCAATAATCCAATGTTACA-CTCGAATACATCT-GATAGACTGTTCAGGTGTTTTACACACAATTTGACCTCGTTATAC--ATAGAACGAATTAGTGCAAAA-AGTTTGCCGTCAATACCTGATTTG--ATCAGTTTAAACCACAAGCAATTACGATTTAGTAAATCATATG--CTTTTAAATAATCCACGA---AGCAACAGTACAATTTCTTCTTATT---AAATAAATGCTATTCA---------------------AT-------------ATAAATATTGCATCCACGGTACTATAATTAGGTTTAAAACCAAATTGCGAGTCCGTTAGAATGTCATTTTGTGAAGACCA-TTT-TTTAAACGCTCATTTAATATAACGGTAAAAAGCTTTGCA
gi|18 : TTTGTGAGAGTGTTATCTTGGTATTTAGAAACAATCAT---AC-AA-AATTATTTTAAGCATAAACT-CAATACAAATTTAAGTTACAATA----CAATGTATT-TTAC-ATTAAA-CTGTTAAA------TCCCTGAATTTGAAACCCTTAATACAATAAGTTGCAAGTTTGTTTAAAATCGA--TTATTTT--GTCAATATTAAGAAGGTTAATAAATTTAAACATGCTTGGATGAGTTGAATAA-----------------TATAAAGGTA------TATATAATTTTCTCAGATCATTA----TAAAATGGGCAAATAAGTATGA
gi|16 : atTTTGTGAGAGAGTTATCTTGGTATTTAGAAACATTCAT---AA-AATAATTATTTGAAGTATAAACT-CAATACAAATTTACATTACAA--AACAGA--GTTTT-CTAC-ATTAAA-CTGTTAAACAGGTATCCCTCAGTTTAAAATCCTTAATACAATAAGTTGCAAGTTTGTTTAAAAAAAAAATT-TTTT--GTCAATATTAAGAAAGTTAATTAATTTAAACATGCTTGGATGAGTTGAATAA-----------------TATTTAGGTA------TATATAATTTTCTCAGATCATTA----T-AAATTTTCAAATAAGTATGAA
gi|17 : TTTGTGAGAGTGGTTTCTTGGTATTTAGAGACAATCAT---AA-AATACTTATTTAAAGCATAAACT-CAATACATATTTATATTACAA-----ACAATGTTTC-CTGC-ATTAAACC-GTTAATCTAGTATCTCGGAGTTTGAAACCCTTAATACAATAAGTTGCAAGTTTGTTTAAAATT-A--TT-TTTT--GTCACTATTAAGAATGTTAATAAATTTAAACATGCTTGGATGAGTTGAATAA-----------------TAGTTAGGTATATATGTATATACTTTTCTAAGATCATTA----TAAAATAGGAAAATAA
gi|30 : aTTTGTGAGAGTGTTATCTTGGTATTTAGAAACAATCAT---ACCAA-AATTGTTTTAAGCATAAACT-CAATACAAATTTAAATTACAATAAATACAATGTATT-CTACTGTT-AAACTGTTAAACGAGAATCTCTGAGTTTGAAACCCTTAATACAATAAGTTGTAAATTTGTTT
gi|29 : atTTTGTGAGAGTGTTATCTTGGTATTTAGAAATAATCAT---AC-AA-AATTATTTTAAGCATATA-T-CAATACAAATTTAAATTACAACA----CAATGTATG-CTAC-ATTAAA-CTGTTAAACGAGAATCCCTGAGTTTGAAACCCTTAATACAATAAGCTGCAAGTTCATTTAAAATCGA--TT-TTTTTGGTCA
gi|15 : atTTTGTGAGATTGTTTTCTTGATATTTATATACAATCAT---AA-AATAATTATTA-AAGCAGAAATT-CATTACAAAATTAAATTACAATA----TAATGTTTT-CTAC-ATTAAA-CTGTTAAACGAGTATG---GAAATCTATACATGTAATGCCATAAGTTACACGTTTGTATAAAATTGA--TT-TTTT--GTCAATATTAAGAAAGTTTATACATTTAAACATACATGGACGAGTTGAATAATATTTAGGTATGTATAATATTTAGGTA------TGTATAATTTTCTCAGATCATTA----TAAAATGTGCAAATAAATA
gi|32 : TTTGTGAGAGTATTATCTTGGTATTTAGAAACAATCAT---AC-AA-AATTATTTTAAGCATAAACT-CAATACAAATTTAAATTACAATAAATACAATGTATT-CTAC-ATTAAAACTGTTAAACGAGAATCCCTGAGTTTGAAACCCTTAATAC
gi|33 : tatTTTGTGAGAGTGTTATCTTGGTATTTAGAAACAATCAT---AC-AC-AATTATTTTAAGCATAAACT-CAATACAAATTTAAATTACAATAAATACAAGGTATT-CTAC-ATT-AAACTGTTAAACGAGAATCCCTGAGTTTGAAACCCTTAATAC
gi|35 : tatTTTGTGAGAGTGTTATCTTGGTATTTAGAAACAATCAT---AC-AA-CATTATTTTAAGCATAAACT-TAATACAAATTTAAATTACAATAAATACAGTGTATT-CTAC-ATT-AAACTGTTAAACGAGAATCCCTGAGTTTGAAACCCTTAATA
gi|36 : atTTTGTGAGAGTGTTATCTTGGTATTCAGAAA-AATCAT---ACAAA-AAATATTTTAAGCATTAACT-CAATACAAATTTTAATTACAA-AA--ACAATGTATT-CTAT-ATTAAACCA-TTAAACGAGAATCCTTGTGTTTGAAACTCCTAATA
gi|37 : atTTTGTGAGAGTGTTATATTGGTATTTAGAAACAATCATTAAAT-AA-AAT--TTTAAAGCATAAACT-CAATACAAATTTACATTAC----AATACAATGTTTT-CTAC-ATTAAACTA-TTAAACAAGTATTCCTGAGTTTGAAACCCGTAAT
gi|43 : ttTTTTGAGAGTGT-ATCTTGGTATTTAGAAACAATCAT---AA-AATAATTATTTTAAGCATAA
gi|39 : attaAGAGT-TTATCTTGGTATTTAGAAACAATCATA--AC-AT-AATTATTTAAAGCAT-TACTGCAATACAAATTTAAAT---AA-AAAAACA----------GC-ATTAAACTGTTTAAA-----------GAGT----AACCCTTGCTACAATAAGTTACAAG
gi|31 : GAGTGTTATCTTGGTATTTAGAAACAATAAT---AA-AATAAATATTTAAACCATAATCT-CATTACAAATTTAAATTACGATA----CAAAGTTTTTCTGC-ATTAAA-CTGTTAAAAGAGCATCTCTGAGTTTGAAACCCTTAATACAATAAGTTGCAA
gi|34 : tttttttTTAAGCATAAAAT-CAATACAAATTTAAATTACAATA----CAATGTATT-CTAT-ATTAAA-CTGTTAAACGAGAATCCCTGAGTTTGAAACCCTTAATACAATAAGTTGCAAGT
gi|3 : gcttagtaatttgacagtcttcatcaaaccatttggtagtgATAA-----------------TGTGTTTGAA------TATATTGCTTACGCAGA-CATTGCTTGTAATAAGGACAATTAAA-ATAAAAATAATATTCGTCTTCTACATCGTTTTTGTCA------------TTTCT---ATATCTATG----T--TTCTG-TGACGTCCGGTTTCTACGTACAATCTGTGAGATGATAATCTTATTTAAGCTATAACATTTTT-TGTTCAATATT-----AACAT---------GTAG---TCTGACATTTGGTAA------GTATGTTTCATATTGCCGTGCA--------A--A-A--TC--------------AACGA---ACA-GTGGCTTAATCTATTTTCATGACTGGTTTG--------TG-----TG---A--ATGTCTCTCAATATATTCCTTAATACAGGTATGCA-TATTTTTACAATA---ACTGATTCCGGAG-TGTCGATATTTCTGCAAAACC-ACATTGGCATAGTAAATT---TCGCACTT--AAGCAGA-CCA-ATTGTTG--CATTCTAGTTTGTTTCAATTTC----ACATCT----CTATACATT-TTAACTGTGTTTGTAACGCAATTTATCTTTTTT-TTC---TTCATACAA----ATAGAGT---CA-----ATATTTC----AT-TATTCATATGTATGTACCTTGCAATTTACCCGTTTCTGAATAAAAAGATCA--TTAATCATGTGAAGACATATGTACATTAAGCGTCTATTTACAGAAT----TG----TCTATG
gi|42 : atatgatactgggtttgtggatCAATTTCATTTAAGTCACAACGTCAACATTTACTTTGATCTCT-TGC--TTGATGTTGATGTCGTC
gi|4 : gaaatgaAGCTAGTTTATGTGATGATAATCGTATTTTAGCTATAGTGTTTCTATATTTTACATTTTCTAAACATAAATA---AGTAGAA-GCTCAAAT-------------GTCTGTTTTAAATGTCTGTATA--------TTTATA--TA--------------AA-GATGTACATGTGACC--ATACATTCCC-T--CCAATTTGC-AA----TG-----TA---T--ATATCTCTAAGCCTAGTCCGTAATAATGGTATGAAACAGTT----TATATTGACTGATTCGGGAAACATCCAAACGTCTGCATAACCTGCATT---AT-GTAAAATAGATCGAACTTTAAAG--GC-CCA-ATT-TTGAACATTGTGATTTTCATCAATTTC----CCTTCTTTGACTATGTATTATTGACCGTA---G-GATACAATT-ATCTTGCTT-ATT---CCCATGTAATTTAAT
gi|5 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGCTAGTTTATGTGATGATAATCGTACTTTAGCTATAGTGTTTCTATATTTTACATTTTCAAAACTTAAATATTAAGAAGAAGGTTCAAAT-------------GTCTGTTTTAAATGTCTGTATATATATATAT--ATA--TA--------------AA-GATGTACATGTGACT--ATACATTCCC-G--CTAATTTGC-AA----TG-----TA---T--ATATCTCTAAGCCTAGTCCATAATAATGTTATGAAACAGTT----AATATTGACCGATTCTGGAAACATCCAAACGTCTGCATATTCTGCATT---AT-GTAAAATCGACCGGACTTTAAAG--GC-CCA-ATT-TTGAAGGTTATGAGTTTCGTAAATTTC----TCTTCTTTG
gi|11 : ataagtttgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTAGCTAAAGTGTTTCTATATTTTATATTTTCTAAACATAAATA---AGTAGAAGGCTCAAAT-------------GTCTGTTTTAANNNNNNNNNNN--------N--NNN--NNNNNNNNNNNNNNNNAA-GATGTACATGTGACC--ATACATTCCC-T--CCAATTTGC-AA----TG-----TA---T--ATATCTTTAAGCCTAGTCCGTAATAATGGTATGAAACAGTT----AATATTCACTGATTCGGGAAACATCCAAACGTCTGCATAACCTGCATT---AT-GTAAAATCGATCGGACTTTAAAG--GC-CCA-ATT-TTGAACATTGTGATTTTCATCAATTTC----CCTTCTTTGACTATGTATTATTGACCGTA---G-AATGCAATA-ATCTTGCT
gi|12 : GTTTTTACATTTTACATTTTCTAAACTTAAATA---AGAAGAAGGTTCAAAT-------------GTCTGTTTTAAATGTCTGTATA--------T--ATA--TA--------------AA--ATGTACATTTGACC--ATACATTCCC-G--CCAATTTGC-AA----TG-----TA---T--ATATCTCTAAGTCTAATTCGTAATAATGGTATGAAATGGTT----AATATTGACTGATTCTGGAAACATCCAAACGTCTGCATATCCTGCATT---AT-GTAAAATCGATCAGACTCTAAAG--GC-TCA-ATT-TTGAAAATTGTGAGTTTCATCAATTTC----TCTTCTTTGACTGTGTATTATTGACCGTA---G-AATACAATT-ATCTTGCTTAATTAACCCCATGTAATTTAATga
gi|9 : TACATTTTCTAAACATAAATA---AGTAGAAGGCTCAAAT-------------GTCTGTTTTAAATGTCTGTATA--------T--ATACATA--------------AA-GATGTACATGTGACC--ATACATTCCC-T--CCAATTTGC-AA----TG-----TA---T--ATATCTCTAAGCCTAGTCCGTAATAATGGTATGAAACAGTT----AATATTGACTGATTCGGGAAACATCCAAACGTCTGCATAACCTGCATT---AT-GTAAACTCGATCGAACTTTAAAG--GC-CCA-ATT-TTGAACATTGTGATTTTCATCAATTTC----CCTTCTTTGACTATGTATTATTGACCGTA---G-AATACAATT-ATCTTGCTT-ATT---CCCATGTAATTTAATGAAGTATTTA-----ACAATTCTCAGATATCTTCCTATATA---AAGTGG----------AACTCGGAATATAGAGATAA--AGg
gi|7 : ACATTTTCTAAACTTAATTA---AGATGACGGTTCAAAT-------------GCCTGTTTTAAATGTCTGTATA-----------------A--------------AA-GATGTACATTTGACT--ATATCTTTAC-G--CCAATTTGC-AAAATATA-----TA---T--ATATATCTAAGCCTAGTTCGTGATGATGGTATGAAACAGTT----AATATCGACTGATTCTGGAAACATCCAAACGTTTGCATATCCTGCATT---AT-GTAAAATAGATCTGACTTTAAAT--GCTTTACATT-TTGAGAATTGTGAGTTTCGTCAATATT----TCTTCTTTGACTATGTATTATTGATCGTG---G-AATACATTT-ATCTTGCTT-AAC---CCCATGTAATTTAGTCAAGTATTTAACAATACAATTCTCAAATATCTTGCTATATA---TAGTGGATATCGACCTAACTCGGAATATAAAGATAA--AAATTT-TGT--AGATAATTTTACATTAAGGc
gi|10 : ACATTTTCTAAACATTAACA---AGAAGAAGGTTCAAATGTCTGTTTTAAATGTCTGNNNNNNNNNNNNNNNNN--------N--NNN--NNNNNNNNNNNNNNN-AA-GATGAAGATGTGTCC--ATACATTCCC-G--CCAATTTGC-AA----TG-----TACTAT--ATATCTCTAAGCCTAGTCTGTAATAATGGTATGAAGCAGTT----AATATTGACTGTTTCTGGAAACATCCAAACGTCTGCATATCCTGCATT---AT-GTAAAATTAATCGGACTTTAAAG--GC-CCA-ATT-TTGAAAATTGTGATTTTCGTCAATTTCTCTTCCTTCTTCGACTATGTATTATTGACCATA---G-AATACAATT-ATCTTGCTT-AAT---CCCAGGTAATTTAATGAA
gi|21 : ACATAAATA---AAAAGAATGTTCAAAT-------------ATCGGTGTCAAATGTCTGTATA--------T--ATA--TA--------------AA-GATGTACATGTGACC--ATACATTCCC-T--CCAATTTGC-AA----TG-----TA---T--ACATTTCTAAGCCTAGTCCGTAATAATTATGTAAAA
gi|25 : ATA--------T--ATA--TA--------------AA-GATGTACATGTGACC--ATACATTCCC-G--CCAATTTGC-AA----TG-----AC---T--ATATCTCTAAGCCTAGTCCGTAATAATGGTATGAAACAGTT----AATATTGACTGATTCGGGAAACATCCAAACGTCTGCATAACCTGCATT---AT-GTAAAATCGATCGGACTTTAAAG--GC-CCA-ATT-TTGAAAATTGTGATTCTCGTCAATTTC----TCTTCtcgatcggactttaaaggcccaattttgaattgtgaattttgtcaatttctcttctttgactatatattactgaccgtagaatgttatttaatgaagtatttaacaattctcagat
gi|28 : TTGCCAA----TGATTTATA---TGAATATCTCTTAATCTATTCCTTAACAAAGGTATGAACAAGTT----TACAAAAACTGATTCCGGATACATCCATATTTCTGCAAAGCC
gi|10 : ttctgtacaaagacaacgaagtgtggattaaaatagtttcGAAACAGTC----AATATTAACTGCTTCactttggcacattcgaagaccagttttttgcattctggtttgtt
gi|21 : acattttctaaacattaacaagaagaaggttcaaatgtctgttttaaatgtctgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagatgaagatgtgtccatacattcccgccaatttgcaatgtactatatatctctaagcctagtctgtaataatggtatATT---AT-GTAAAATCGATCGGACTTTAAAG--GC-CCA-ATT-TTGAA--TTGTGAATTTTGTCAATTTC----TCTTCTTTGACTATATATTACTGACCGTA---G-AA----------------------------TGTTATTTAATGAAGTATTTA-----ACAATTCTCAGATtggaaacatccaaacgtctgcatatcctgcattatgtaaaattaatcggactttaaaggcccaattttgaaaattgtgattttcgtcaatttctcttccttcttcgactatgtattattgaccatagaatacaattatcttgcttaatcccaggtaatttaatgaa
gi|13 : acataaataaaaagaatgttcaaatatcggtgtcaaatgtctgtatatatataaagatgtacatgtgaccatacattccctccaatttgcaatgtatacatttctaagcctagtccgtaata---AAGTGAAAATCTATTTAACTCTGCGTATAAAGATTATTGGTATT-TGT--CAACGTTTCAACATTGATTAATTATTTACAAAACATTTTTGTACTCTGTAAATACCCTC-----TGT---GT----------CCCACACCTCCCAACTATAGTGTAATATAGATACATTATCAGATTCATAAATTAAATTGAACAAACTGT-TGAT-GCA-TACA--TTCAAC-T-CTTTTGTCAC--ATTAAA-C-AACTGGCTCACAGCCCGTAACACTTTACCAG--CCAA------TGTATTTGC--TTGCAGCTATAATGTTAG-AACCACCAAGTATAGATACATTATTCCCAAATAATTGAAA
gi|45 : ttCGAATCCCCATCTTTCACAACCATAATTTAA
gi|22 : AACGT---ATGAGTCAAATAGGTTAAACA--TTATATT---G-A-TAGGTATTTCATATGTTTTTGTTAC--GCTAAGCA-AG-GTACTCATTGCCCGCAAGGCTTTACCAG--ATAG------AGTGCTCGCGTTT---TTAATAA---ATG-ACCCTCCACTTG-ACAAA-ACTATACCTAGATAATTGAAACTGTTGACTATTTCAATTTC--TGAC-TCGGATGTCCATTTATCATTTTTACTTAACAT------CCCACCCTTTC-GAACA----------TGTTTTA--AACATgccatatg
gi|8 : AACAA---AAGCATCAAATAGATTAAACA--ATATAT----TTACTGGCGCCTTAACCT-TTCTTGTCATGGA-CAAT-A-GAC-AGCTCATCGACTTAATTGCTTTATCGGCCATAG------C--ATTTG---TCGCTTGTGCAA---ATG-ACCCTCCACTCG-ACATT-TTTAATCCGAGATCATTGAAACAGCTTACAGTTTCAATCACCTGACCCGCGTATGTCCA-----CAATA-CATTTCGTGCAAGTTGTCCACTTTTCCTGAATATAACAAGTTTTTTTTTTTTAATGTTAACGGTTAAATTCCAATCTTCGCAATAGTGTTCTAGTTTATTTAACGACGACTGGAGTCCCTCGGCACTT---TCAGATAGCAAAAAT---GCATCGTCCGCGAAACAG-AGCAGGTAAATTTGTAGCTG
gi|23 : atacctcatttgagtaaaacaatactggcccACAT---ATGCGTCCAATAGGTTAAACA--TTAT-TGTAAATG-TA----TTTAATAC-TGTTT-TCAC--G-CAAA-ACATTGGACTTGTTGACCGCAAGAATTTACCAG--ATAGAGTGCCCACATTT----TT-CATAAAT-------G-ATCCACCACTTG-ACACT-ACTATACCTAGATATATAAAACTATTAAATATTT-TATTTCTGTTGCGGCATAGGTCCATTTAT
gi|14 : TTAAATA--TTATATG---GTA-TGGAACTTCCATAT-TTTTTGTTAT--ATTAAA-A-AGTGAACTCTTCGCTCTAAGTGCTttcgttgacttaacagc
gi|26 : tatttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAT-GTTTTGTTGT--ATTAAA-A-AAAGAACTCATAGCTCTAAGAGCTTTACCTG--AAAG------CGTGTTTG----TGCATGAACAA---TAGAACCCCCTATTTG-ACATA-ATCATTTCTTAATAGTTAAACGTACTAACAATGTCTTTCTCCTTTCCATCATATAACCATTTATCATTAACACTTAATAC------CCCATCTTTACGGAACACTAagattatcatctgggaaaaacat
gi|2 : TTCCA-CTCCTTGTAAATGCATAAC-ATTTATCATCAGCACTTAATAT------CCCGCCTTTGCGGAACAATACTGTTTTTGTGTTATTTACATTAACCATTTAGTTTCATTTT--ACAATTGGAATATAAACTATTTAAAGATTCCTGGAGTCC-------------------------ATTACAGCAGCATCCGC-AAATAACAACAGAAAGATTGATAACTGTTCAACAGAA-AC--ACCA--ACATTAATATCCT--GTT---GGATATGCATTTCAATATAATTCCG-AAAAGAGGAAATAA-AATCGGAGAACGGATCTCCCCGTGCAATAATCCAATGTTACA-CTGGAATACATTT-GATAGACTGTTCA-TTGTTTTACACACAATTTGGCCTCGTTTTAC--ATAGAACGAATTAGTGCGAAT-AGTTAACCATCAATACTTGATTTG--ATCAGTTTAAACCACAAGCA----------AGTAAATCATATG--CTTTTATATTATCCACGA---AGCAACAGTACACGTTCTCCTTATT---ACATACAGGTTGTTCAATGTTCAAAATATTGAGTTGTAT-------------ATAAATATTGCATCGTAGGTACTATAATTAGGTTTAAAACTAAATTGAGAGTCCGTTAGATTGTCATTTTGTGAAGACCATTTT-TTTAAACGCTCATTTAATATAACGGTAAAAAGCGTT
gi|27 : TTTAACATAATATTAACCGGCACATTCATACCCTTTGTCATAGGGGGTA-ATTTCCAAGTCGTCCA-AAACAGGGAAAATAATAAT-GGGGAAGTTATCTCCTCTTGAAACTATCCAATATCGCAGCTAAAAAAC-TCT-GATAAGATGATGAATTGTTTTTCACACGAGTTAACATCTTTGTACAGATAGATCG
gi|20 : TTCAACATCATTTACAAAATGTGAAAA-------CGTA-------TCTACCCATGCAATAATCCTAAATTGCA-ATCAAAGAAATCTTGAGAAAATATTCAGATGTTTGACACA--GTCTAATTTCGTTATAA--ATGGATCGAA-TAATACCGAGTAATTTACCCTC-TTA-TTCATTTGTTATCAATTTGAATCAAAATCCATTTCTGTATATTGAATCAAACGCCCTTTTCA--GATCTATAAGACGGCAATAATACAAATTAGTTTTGTT---
gi|40 : TTTCACCTCATCATAC--ATGGATCTGATTAATGAGAAT-AATTTGCCATTTGTCTCGGGTCTT--ATTAATTTAAACCATACACTATTTCGGCCAATTAAATCATTGG--CTTTTTTGAAGTCCACGA---ccttat
gi|6 : ATTTCGGTCAATTAAATCATAGG--CTTTTTTGAAGTCCACAA---AACAACAGAATAATTTATTTTTACCGCCAAGT---TGCTTTTCA---------------------GTCAGTGAATTAAGGATGAATATAGCATCCACCGTACTCTAATTGGGTTTAAACCCGAACTGAGCGACAGTCAACATATCATTTTCGGCGGCCCA-TTTTTTTAATCGCTCATTGATTATAACAGTGAAAAACTTGGCA
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|19 ): AAATGATATTCATCGTTGTAGTTGCAAAGTACCATTTTTTTTTTCATTTATATCTAGTATATTTCTGTCACGTCCGTTCTAAATGTACACACTTTTTTAAGCTATTACATTTTCATGATTTCATTGTTCAATTTTAACAAGTATTCTGCTATTTGGTAAGCATGTTTGATAGTGCTGTACAAAATAAGCGAGTAGTGGTTTAAATTTTTCTTCTCAATGGTCTATATGAATATTTCTCAATCTATTCCTTAACAATCCTATGGA
Unaligned ( gi|24 ): AGATCACTCTTTCTGAATAGATAACAGCATCATCTGCAGAAAGCTAAAATGGTAATAAAAAGTTGAGCTAAAATCAGGCTGGTATTATGATCATGTTGAAGAAAGAGTTCAAAGACAGTAACGAACAATGACAGTACAATCGGTAAGAGTATCTCTCCTTGTAAGGATCCAATTTCGCAATTGTAGAAAAAGTTATTTATATGTTTAACACACACAT
Unaligned ( gi|38 ): GTGGTCTGATATTTGGTAAGTATGTTTGTACAATACATTTCGCACTTTAGAAAACCAATTGTTTTGCATCCTGGTATGTTTCAATTTCTTGCATCTGTACATTTTTAATGGTATTTAAAACACAAGACTTTTTTCTTT
Unaligned ( gi|41 ): CGTGTGAGTCAAATAGGTTGAACATGTTTATGTTTATAGGTGTGTGCTAATATTTTGTTGCGCTAAACAATGTACTTATTGTACGCAGGGCTTTACCAGATACAGTACCCGC
Unaligned ( gi|44 ): ACTATTTCGGCCAATTAAACCATTGGCTTTTTTGAAGTCCACGAATAATT
Unaligned ( gi|46 ): TAGTATTTGTCTCCAATACATAAACCAGAGACATAAACA
Alignments
lowQualScore : 111111111111111111111111 11111111111111111111111111111111111111111111111111111111
lowQualScore : 1 222 44444444444444444 111111 1111 1 2 333333333 3333333333333 44444444444444444444444444444444 22222 111 11 1 11 3333333333 7777777777777777777777 111 111111 3333333 1111 222 111 11111 11 1 222222 33333 1 111 000000000000000000000000 2 22 1 3333 55555555 11 1111 11 33333333 11 111 11 11 1 333 1 11 111 88888888888888888888888888888888888888888888888888888888 2
lowQualScore : 777 5 3 2 2 1 666 2 2 2 2 2 2 1 99 6 99 2 66666666666666666 999999 4444 0 5 1 11 0 22 9999999 1 7 1 3 666666666 7 1 2 2 777 2 5555555555555 33333333333333333333333333333333 3 55 6666 44 7777 555 44 7777 1 1 666 3 0 55 3 3 3 4 7777 777 4 4 9999999 11 00000 8 0 2 444 66 5 1 1 11 0 33 66 1 555 0 5555555555 2 7777777777777777777777 11 0 1 0 0 1 4 4 111 77 5 5 222222 2222222 2222 1 0 5 5 3 222 5 33 1 888 77 0 555 444 1 111 44 33333 6 1 6 6 0 3 8 1 1 1 22 11 7 99 4 333333 1 5 77 33333 0 0 1 0 1 0 111 1 222 1 222 1 888 000000000000000000000000 1 999 1 3 77 0 11 3 11 0 1 00 2 2222 1 0 00000000 222 6 0 1 2 00 0 8 1 0000 11 99999999 8 2 8 1 1 00 8 0 111 44 1 4 1 11 1 3 0 0 444 55 0 33 1 1 8 1 1 111 1 3 33333333333333333333333333333333333333333333333333333333 0 1 4444 1 0 1 0 0 1 1 1 0 22 22 77 1 3 7 1 1 1 0 1 1
lowQualScore : ... . . . . . ... . . . . . . . .. . .. . ................. ...... .... . . . .. . .. ....... . . . . ......... . . . . ... . ............. ................................ . .. .... .. .... ... .. .... . . ... . . .. . . . . .... ... . . ....... .. ..... . . . ... .. . . . .. . .. .. . ... . .......... . ...................... .. . . . . . . . ... .. . . ...... ....... .... . . . . . ... . .. . ... .. . ... ... . ... .. ..... . . . . . . . . . . .. .. . .. . ...... . . .. ..... . . . . . . ... . ... . ... . ... ........................ . ... . . .. . .. . .. . . .. . .... . . ........ ... . . . . .. . . . .... .. ........ . . . . . .. . . ... .. . . . .. . . . . ... .. . .. . . . . . ... . . ........................................................ . . .... . . . . . . . . . .. .. .. . . . . . . . . .
lowQualScore : 333 3 3 1 7 9 111 8 7 7 7 7 7 0 22 7 22 2 77777777777777777 222222 2222 8 5 0 77 7 00 3333333 0 3 0 7 000000000 3 0 5 8 000 4 0000000000000 66666666666666666666666666666666 6 00 8888 66 1111 888 66 7777 0 0 444 6 5 00 6 6 6 5 7777 888 4 4 2222222 88 00000 0 8 5 000 66 4 0 0 00 0 88 00 0 333 7 0000000000 5 0000000000000000000000 77 7 0 7 7 0 0 0 777 99 7 0 000000 9999999 1111 3 1 0 0 0 999 4 55 0 888 99 6 222 222 0 777 77 77777 7 0 7 7 3 7 0 0 0 0 00 55 8 22 0 000000 0 0 00 88888 0 7 0 7 0 7 777 0 777 0 333 0 333 000000000000000000000000 0 777 0 3 33 7 77 7 77 7 0 77 3 0000 0 7 00000000 333 7 8 0 0 88 6 0 0 4444 00 88888888 2 2 0 0 0 66 0 6 666 44 0 2 8 00 4 2 0 8 222 88 0 88 0 0 8 0 0 777 0 0 88888888888888888888888888888888888888888888888888888888 7 0 0000 0 7 0 7 7 0 0 0 7 00 00 33 0 7 3 0 0 0 7 0 0
consensus : TTTGTGAGAGTGTTATCTTGGTATTTAGAAACAATCAT---AC-AA-AATTATTTTAAGCATAAACT-CAATACAAATTTAAATTACAATAAA-ACAATGTATTCTAC-ATT-AAA-CTG-TTAAACGAGAATCCCTGAGTTTGAAACCCTTAATACAATAAGTTGCAAGTTTGTTTAAAATCGA--TT-TTTT--GTCAATATTAAGAAGGTTAATAAATTTAAACATGCTTGGATGAGTTGAATAA-----------------TATTTAGGTA------TATATAATTTTCTCAGATCATTA----TAAAATGGGCAAATAAGTATGAAAATGGTATTCGTCTTCGACGTCGTTTAAGTCACAACGTCAACATTTTCTTTGATCTCT-TGC--TT--T-TTGATGTCGTCCNGTTTCTACGGCTAGTTTATGTGATGATAATCGTATTTTAGCTATAGTGTTTCTATATTTTACATTTTCTAAACATAAATA---AGNAGAAGGCTCAAAT-------------GTCTGTTTTAAATGTCTGTATA--------T--ATA--TA--------------AA-GATGTACATGTGACC--ATACATTCCCG---CCAAT--TTGCAA----TGTA---T--ATATCTCTAAGCCTAGTCCGTAATAATGGTATGAAACAGTT----AATATTGACTGATTCNGGAAACATCCAAACGTCTGCATANCCTGCATT---AT-GTAAAATCGATCGGACTTTAAAG--GC-CCA-ATT-TTGAANATTGTGATTTTCGTCAATTTC----CCTTCTTTGACTATGTATTATTGACCGTA---G-AATACAATT-ATCTTGCTT-ATT---CCCATGTAATTTAATGAAGTATTTA-----ACAAT-TCTCAGATATCTTCCTATATA---AAGTGGAAATCGACCTAACTCGGAATATAAAGATAA--AGAATT-TGT--AGACANTTTTACATTAAGNANCTATTTACAAAACATTTTTGTACTCTGTGAATACNCTCAATGTTGTCTAGT----CGAA-CCCCATACTTCACAACTATAATTTAANACNGATACAACGT---ATGCGTCAAATAGGTTAAAC--AT-TATATGGT-A-TAG-G-C---TT----CAATAT-TTTTTGTTACGC-TAAANAACGAACTCATNGCCCGNAGNGCT---TTACCAG--ATAGCGTATTTGC--TCGCA---TNNATAA---NNGA-CCCNCCACTTG-ACATA-ACTATTCCTAGATAATTGAAAC-TACTAACAATTTCNATCTCCTTNCCANCGTATGTCCATTTA--TCATTAGCACTTAATAC------CCCACCTTTNCGGAACACTAC--G--TTTT-GTTTTATTAACGTTAACCGTTAAGTTTCATTTTTCACAATAGGAATATAAATTATTTAAAGATTNCTGGAGTCCCTC----CTT---TC-GA---CA-AATTACGGCATCGTCCGC-AAACAACAACAGATANATTGATAACTGTTCAACAGAA-TACCAACCG--ACATTAATATCCT--GTC---GGAGATGCATTTCGATATCATTCA-AAAAA-GNGAAAATAA-AATCGG--AGAA---AT---CTCCCCTTGCAATAATCCAATGTCGCA-CTCGAANACATCT-GATAAAA--TGTTCAGNTGTTTTACACACGATTTGACCTCGTTATAC--ATAGATCGAATTAGTG-CGAATAGTTTGCCGTC-GATACTTGA-TTTG--ATCAGTTTAAACCACAAGCTATTTCGGTCAATTAAATCATANGCTTTTTTGAAGTCCACGA---AGCAACAGTACAANTTNTTCTTATTGC---CAGGTTGTTNAAT-TTCAAAAT-----GCTGTGTCAGT---------ATAAATATTGCATCCACGGTACTATAATTAGGTTTAAAACCGAATTGAGAGTCCGTTAGAATGTCATTTTGTGAAGACCA-TTTTTTTAAACGCTCATTTAATATAACGGTAAAAAGCTTNGCA
Reference ( family-805 ) : TTTGTGAGAGTGTTATCTTGGTATTTAGAAACAATCAT---AC-AA-AATTATTTTAAGCATAAACT-CAATACAAATTTAAATTACAATAAA-ACAATGTATTCTAC-ATT-AAA-CTG-TTAAACGAGAATCCCTGAGTTTGAAACCCTTAATACAATAAGTTGCAAGTTTGTTTAAAATCGA--TT-TTTT--GTCAATATTAAGAAAGTTAATAAATTTAAACATGCTTGGATGAGTTGAATAA-----------------TATTTAGGTA------TATATAATTTTCTCAGATCATTA----TAAAATGGGCAAATAAGTATGAAAATAATATTCGTCTTCNACNTCGTTTNNGTCACAACGTCAACATTTNCTTTGATNTCTATGC--TTGATNCTGATGNCGTCCGGTTTCTACGGCTAGTTTATGTGATGATAATCGTATTTTAGCTATAGCGTTTCTATATTTTACATTTTCTAAACATAAATA---AGNAGAAGGCTCAAAT-------------GTCTGTTTTAAATGTCTGTATA--------T--ATA--TA--------------AA-GATGTACATGTGACC--ATACATTCCCN---CCAAT--TTGCAA----TGTA---T--ATATCTCTAAGCCTAGTCCGTAATAATGGTATGAAACAGTT----AATATTGACTGATTCNGGAAACATCCAAACGTCTGCATANCCTGCATT---AT-GTAAAATCGATCGGACTTTAAAG--GC-CCA-ATT-TTGAANATTGTGATTTTCGTCAATTTC----CCTTCTTTGACTATGTATTATTGACCGTA---G-AATACAATT-ATCTTGCTT-ATT---CCCATGTAATTTAATGAAGTATTTA-----ACAAT-TCTCAGATATCTTCCTATATA---AAGTGGAAATCTACCTAACTCNGAATATAAAGATNA--AGAATT-TGT--AGACGTTTNTACATTAAGCGNCTATTTACAGAACATTTTNGTACTCTGTGAATACCCTC-----TGT---GT----CGAATCCCCACNCCTCNCAACCATAGTNTAATATAGATACAACAT---ATGCGTCAAATAGGTTAAAC--AT-TATATGGT-A-TAG-A-C---TT----TAATAT-TTTTTGTCACAT-TAAAAAACGAACTCATCGCCCGNAANGCT---TTACCAG--ATAGCGTATTTGC--TTGCA---TNAATAA---NNGA-CCCNCCACTTG-ACATA-ATTATTCCTAGATAATTGAAAC-TGCTAACNATTTCNATCTCCTTNNCGNCGTATGTCCATTTA--TCATTANCACTTAATAC------CCCACCTTTNCGGAACANTAC--G--TTTT-GTTTTATTAACGTTAACCGTTNAGTTCCANTCTTCGCAATNGNGNTNTAGNCTATTTAANGACGNCTGGAGTCCCTCGGCACTT---TCAGATAGCAAAANTACAGCANCGTCCGCGAAACAGCAGCAGGNAGATTNGTAGCTGTTCAACANAA-TACTAACCGGCACATTNATACCCTTTGTCATAGGGNGTGCATTTCAANATCGTTCA-AAAAA-GNGAAAATAA-AATCGG--AGAA---AT---CTCCCCGTGCAATAATCCAATATCGCA-CTNAAANACATCT-GATAAAA--TGTTCAGTTGTTTTACACACGATTTAACCTCGTTATAC--ATGGATCGAATTAATG-CGAATAATTTACCATC-G-TACTTGA-TTTG--ATCAATTTAAACCANAANCNATTTCGGTCAATTAAATCATANGCTTTTTTGAAGTCCACGA---AGCAACAGTACAANTTATTTTTATTACGTACANGCTNTTCAATGTTCAAAATATTGAGTTGTGTCAGTGAATTAAGGATGAATATNGCATCNNNNGTACTNTAATTGGGTTTAAANCCGAACTGAGNGNCNGTCAGNNTGTCATTTTNNGCGGNCCATTTTTTTTAANCGCTCATTNANTATAACGGTGAAAAGCNTNGCA
gi|1 : TTTGTGAGAGTGTTATCTTGGTATTTATAAACAATCAT---AC-AA-AATTATTTTAAGCATAAACT-CAATACAAATTTAAATTACAATAAATACAATGTATTCTAC-ATT-AAAACAG-TTAAACGAGAATCCCTGAGTTTGAAACCCTTAATACAATAAGTTGCAAGTTTGTTTAAAATCGA--TT-TGTT--GTCAATATTAAGAAGGTTAATAAATTTAAACATGCTTGGATGAGTTGAATAA-----------------TATTTAGGTA------TATATAATTTTCTCAGATCATTA----TAAAATGGGCAAATAAGTATGAAA-TGGTATTCGTCTTCGATGTCATTTAAGTCACAACATTAACATTTTCTTTGGTCTCT-TGCAATT--TTTTGATGTCGTCCTGTTTCTATAGCTAGTTTATGTGATGATAATCGTATTTTAGCTATAGTGTTTCTATATTTTACATTTTCTAAACATAAATA---AGTAGAAAGCTCAAAT-------------GTCTGTTTTAAATGTCTGTATA--------T--ATA--TA--------------AA-GATGTACATGTGACC--ATACATTCCCT---CCAAT--TTGCAA----TGTA---T--ATATCTCTAAGCCTAGTCCGTAATAATGGTATGAAACAGTT----AATATTGACTGATTCGGGAAACATCCAAACGTCTGCATAACCTGCATT---AT-GTAAAATCGATCGAACTTTAAAG--GC-CCA-ATT-TTGAACATTGTGATTTTCATCAATTTC----CCTTCTTTGACTATGTATTATTGACCGTA---G-AATACAATT-ATCTTGCTT-ATT---CCCATGTAATTTAATAAAGTAATTA-----ACAAT-TCTGAGATATCTTCCTATATA---AAGTGGAAATCGACCTAACTCAGAATATAGAGATAA--AGAATT-TGT--AGATAATTTTACATTAAGGACCCATTTGCAAAAC---TT-----TCTATGAATACGTTCAATGTTGTCTAGTTTTGCGAAACCCCATACTTCACAACTATAATTTAAAACTGATAAAACAT---ATGCATCAAACAGATTAAAC--AT-TATATGGT-A-TAG-AAC---TT----CCATAT-TTTTTGTTATAT-CAAAAAGCGAACTCATAGCTCTAAATGCT---TTACCTG--AAAGCATATTTG---TTGCA---TGAATAA---TAGA-CCCCCCACTTG-ACATA-ACCATTCCTAAATAGTTAAAAG-TACTAACAATTTCTATCTCCTTTCCATCATATAACCATTTA--TCATCAGCACTTAATAC------CCCACCTTTACGGAACACTAC--TATTTTT-GTTTTATTAACATTAACCGTTAAGTTTCTTTTTTTACAATAGGAATATAAATTATTTAAAGATTTCTGGAGTCCTTCT---CTTGTCTCCGA---CATAATTACGGCATCGTCCGC-AAACAACAACAGATATATTGATAACTGTTCAACAGAAATACCAAC------ATTAACATTCT--GTT---GGAGATGCATTTCGATATCATTCAGAAAAA-GAGAAAAAAA-AATCGG--AGAA---GTGGTCTCCCCTTGCAATAATCCAATGTTACA-CTCGAATACATCT-GATAGAC--TGTTCAGGTGTTTTACACACAATTTGACCTCGTTATAC--ATAGAACGAATTAGTG-CAAAAAGTTTGCCGTC-AATACCTGA-TTTG--ATCAGTTTAAACCACAAGCAATTACGATTTAGTAAATCATATGCTTTTAAATAATCCACGA---AGCAACAGTACAATTTCTTCT--------------TATTAAAT-----AAAT-----GCTAT-TCAAT---------ATAAATATTGCATCCACGGTACTATAATTAGGTTTAAAACCAAATTGCGAGTCCGTTAGAATGTCATTTTGTGAAGACCA--TTTTTTAAACGCTCATTTAATATAACGGTAAAAAGCTTTGCA
gi|10 : ACATTTTCTAAACATTAACA---AGAAGAAGGTTCAAATGTCTGTTTTAAATGTCTGNNNNNNNNNNNNNNNNN--------N--NNN--NNNNNNNNNNNNNNN-AA-GATGAAGATGTGTCC--ATACATTCCCG---CCAAT--TTGCAA----TGTACTAT--ATATCTCTAAGCCTAGTCTGTAATAATGGTATGAAGCAGTT----AATATTGACTGTTTCTGGAAACATCCAAACGTCTGCATATCCTGCATT---AT-GTAAAATTAATCGGACTTTAAAG--GC-CCA-ATT-TTGAAAATTGTGATTTTCGTCAATTTCTCTTCCTTCTTCGACTATGTATTATTGACCATA---G-AATACAATT-ATCTTGCTT-AAT---CCCAGGTAATTTAATGAA
gi|11 : TTTAGCTAAAGTGTTTCTATATTTTATATTTTCTAAACATAAATA---AGTAGAAGGCTCAAAT-------------GTCTGTTTTAANNNNNNNNNNN--------N--NNN--NNNNNNNNNNNNNNNNAA-GATGTACATGTGACC--ATACATTCCCT---CCAAT--TTGCAA----TGTA---T--ATATCTTTAAGCCTAGTCCGTAATAATGGTATGAAACAGTT----AATATTCACTGATTCGGGAAACATCCAAACGTCTGCATAACCTGCATT---AT-GTAAAATCGATCGGACTTTAAAG--GC-CCA-ATT-TTGAACATTGTGATTTTCATCAATTTC----CCTTCTTTGACTATGTATTATTGACCGTA---G-AATGCAATA-ATCTTGCT
gi|12 : GTTTTTACATTTTACATTTTCTAAACTTAAATA---AGAAGAAGGTTCAAAT-------------GTCTGTTTTAAATGTCTGTATA--------T--ATA--TA--------------AA--ATGTACATTTGACC--ATACATTCCCG---CCAAT--TTGCAA----TGTA---T--ATATCTCTAAGTCTAATTCGTAATAATGGTATGAAATGGTT----AATATTGACTGATTCTGGAAACATCCAAACGTCTGCATATCCTGCATT---AT-GTAAAATCGATCAGACTCTAAAG--GC-TCA-ATT-TTGAAAATTGTGAGTTTCATCAATTTC----TCTTCTTTGACTGTGTATTATTGACCGTA---G-AATACAATT-ATCTTGCTTAATTAACCCCATGTAATTTAATGga
gi|13 : ---AAGTGAAAATCTATTTAACTCTGCGTATAAAGATTATTGGTATT-TGT--CAACGTTTCAACATTGATTAATTATTTACAAAACATTTTTGTACTCTGTAAATACCCTC-----TGT---GT----------CCCACACCTCCCAACTATAGTGTAATATAGATACATTATCAGATTCATAAATTAAATTGAACAAAC-TGT-TGAT-G-CAT-A-CA--TT----CAAC-T-CTTTTGTCACAT-TAAACAACTGGCTCACAGCCCGTAACACT---TTACCAG--CCAATGTATTTGC--TTGCA---GCTATAATGTTAGA-ACCACCAAGTATAGATACATTATTCCCAAATAATTGAAA
gi|14 : ttTTAAAT--AT-TATATGGT-A-TGG-AAC---TT----CCATAT-TTTTTGTTATAT-TAAAAAGTGAACTCTTCGCTCTAAGTGCTAGATTATCA
gi|15 : tatttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTGTGAGATTGTTTTCTTGATATTTATATACAATCAT---AA-AATAATTATTA-AAGCAGAAATT-CATTACAAAATTAAATTACAATA----TAATGTTTTCTAC-ATT-AAA-CTG-TTAAACGAGTATG---GAAATCTATACATGTAATGCCATAAGTTACACGTTTGTATAAAATTGA--TT-TTTT--GTCAATATTAAGAAAGTTTATACATTTAAACATACATGGACGAGTTGAATAATATTTAGGTATGTATAATATTTAGGTA------TGTATAATTTTCTCAGATCATTA----TAAAATGTGCAAATAAATAtctgggaaaaacat
gi|16 : TTTGTGAGAGAGTTATCTTGGTATTTAGAAACATTCAT---AA-AATAATTATTTGAAGTATAAACT-CAATACAAATTTACATTACAA---A-ACAGAGTTTTCTAC-ATT-AAA-CTG-TTAAACAGGTATCCCTCAGTTTAAAATCCTTAATACAATAAGTTGCAAGTTTGTTTAAAAAAAAAATT-TTTT--GTCAATATTAAGAAAGTTAATTAATTTAAACATGCTTGGATGAGTTGAATAA-----------------TATTTAGGTA------TATATAATTTTCTCAGATCATTA----T-AAATTTTCAAATAAGTATGAA
gi|17 : TTTGTGAGAGTGGTTTCTTGGTATTTAGAGACAATCAT---AA-AATACTTATTTAAAGCATAAACT-CAATACATATTTATATTACAA-----ACAATGTTTCCTGC-ATT-AAA-CCG-TTAATCTAGTATCTCGGAGTTTGAAACCCTTAATACAATAAGTTGCAAGTTTGTTTAAAATT-A--TT-TTTT--GTCACTATTAAGAATGTTAATAAATTTAAACATGCTTGGATGAGTTGAATAA-----------------TAGTTAGGTATATATGTATATACTTTTCTAAGATCATTA----TAAAATAGGAAAATAA
gi|18 : aTTTGTGAGAGTGTTATCTTGGTATTTAGAAACAATCAT---AC-AA-AATTATTTTAAGCATAAACT-CAATACAAATTTAAGTTACAATA----CAATGTATTTTAC-ATT-AAA-CTG-TTAAA------TCCCTGAATTTGAAACCCTTAATACAATAAGTTGCAAGTTTGTTTAAAATCGA--TTATTTT--GTCAATATTAAGAAGGTTAATAAATTTAAACATGCTTGGATGAGTTGAATAA-----------------TATAAAGGTA------TATATAATTTTCTCAGATCATTA----TAAAATGGGCAAATAAGTATGA
gi|2 : atTTCCA-CTCCTTGTAAATGCATA-ACATTTA--TCATCAGCACTTAATAT------CCCGCCTTTGCGGAACAATACT-G--TTTTTGTGTTATTTACATTAACCATTTAGTTTCATTTT--ACAATTGGAATATAAACTATTTAAAGATTCCTGGAGTCC-------------------------ATTACAGCAGCATCCGC-AAATAACAACAGAAAGATTGATAACTGTTCAACAGAA--AC--ACCA--ACATTAATATCCT--GTT---GGATATGCATTTCAATATAATTCC-GAAAA-GAGGAAATAA-AATCGG--AGAACGGAT---CTCCCCGTGCAATAATCCAATGTTACA-CTGGAATACATTT-GATAGAC--TGTTCA-TTGTTTTACACACAATTTGGCCTCGTTTTAC--ATAGAACGAATTAGTG-CGAATAGTTAACCATC-AATACTTGA-TTTG--ATCAGTTTAAACCACAAGC----------AAGTAAATCATATGCTTTTATATTATCCACGA---AGCAACAGTACACGTTCTCCTTATTACATACAGGTTGTTCAATGTTCAAAATATTGAGTTGTAT-------------ATAAATATTGCATCGTAGGTACTATAATTAGGTTTAAAACTAAATTGAGAGTCCGTTAGATTGTCATTTTGTGAAGACCATTT-TTTTAAACGCTCATTTAATATAACGGTAAAAAGCGT
gi|20 : TTCAACATCATTTA-CAAAATGTGAAAA-------CGT--A-------T---CTACCCATGCAATAATCCTAAATTGCA-ATCAAAGAAATCTTGAGAAAA--TATTCAGATGTTTGACACA--GTCTAATTTCGTTATAA--ATGGATCGAA-TAATACCGAGTAATTTACCCTC-T-TA-TTCA-TTTGTTATCAATTTGAATCAAAATCCATTTCTGTATATTGAATCAAACGCCCTTTTCAGATCTATAAGACGGCAATAATACAAATTAGTTTTGTTt
gi|21 : ACATAAATA---AAAAGAATGTTCAAAT-------------ATCGGTGTCAAATGTCTGTATA--------T--ATA--TA--------------AA-GATGTACATGTGACC--ATACATTCCCT---CCAAT--TTGCAA----TGTA---T--ACATTTCTAAGCCTAGTCCGTAATAATTATGTAAAAccttat
gi|21 : ATT---AT-GTAAAATCGATCGGACTTTAAAG--GC-CCA-ATT-TTGAA--TTGTGAATTTTGTCAATTTC----TCTTCTTTGACTATATATTACTGACCGTA---G-A----------------------------ATGTTATTTAATGAAGTATTTA-----ACAAT-TCTCAGATtcgatcggactttaaaggcccaattttgaattgtgaattttgtcaatttctcttctttgactatatattactgaccgtagaatgttatttaatgaagtatttaacaattctcagat
gi|22 : acataaataaaaagaatgttcaaatatcggtgtcaaatgtctgtatatatataaagatgtacatgtgaccatacattccctccaatttgcaatgtatacatttctaagcctagtccgtaataAACGT---ATGAGTCAAATAGGTTAAAC--AT-TATATTG--A-TAG-G-TA--TT----TCATATGTTTTTGTTACGC-TAAGCAAGGTACTCATTGCCCGCAAGGCT---TTACCAG--ATAGAGTGCTCGCGTTT------TTAATAA---ATGA-CCCTCCACTTG-ACAAA-ACTATACCTAGATAATTGAAAC-TGTTGACTATTTCAATTTC--TGAC-TCGGATGTCCATTTA--TCATTTTTACTTAACAT------CCCACCCTTTC-GAACAT-----G--TTTT-
gi|23 : ACAT---ATGCGTCCAATAGGTTAAAC--AT-TAT----T-G-TAA-A-TGTATT----TAATAC-TGTTT-TCACGC-AAAACATTGGACTTGTTGACCGCAAGAAT---TTACCAG--ATAGAG----TGC--CCACATTTTTCATAA---ATGA-TCCACCACTTG-ACACT-ACTATACCTAGATATATAAAAC-TATTAAATATTT-TATTTCTGTTGCGGCATAGGTCCATTTATTTCGTTG--ACTTAACAaaacat
gi|24 : AACA-ATGACAGTAC-AATCGGTAAGAGT--AT---CTCTCCTTGTAAGGATCCAATTTCGCA-ATTGTAGA---------AAAAGTTATTTATATGTTTAACACACgc
gi|25 : agatcactctttctgaatagataacagcatcatctgcagaaagctaaaatggtaataaaaagttgagctaaaatcaggctggtattatgatcatgttgaagaaagagttcaaagacagtaacgATA--------T--ATA--TA--------------AA-GATGTACATGTGACC--ATACATTCCCG---CCAAT--TTGCAA----TGAC---T--ATATCTCTAAGCCTAGTCCGTAATAATGGTATGAAACAGTT----AATATTGACTGATTCGGGAAACATCCAAACGTCTGCATAACCTGCATT---AT-GTAAAATCGATCGGACTTTAAAG--GC-CCA-ATT-TTGAAAATTGTGATTCTCGTCAATTTC----TCTTCacat
gi|26 : AT-GTTTTGTTGTAT-TAAAAAAAGAACTCATAGCTCTAAGAGCT---TTACCTG--AAAGCGTGTTTG----TGCA---TGAACAA---TAGAACCCCCTATTTG-ACATA-ATCATTTCTTAATAGTT-AAACGTACTAACAATGTCTTTCTCCTTTCCATCATATAACCATTTA--TCATTAACACTTAATAC------CCCATCTTTACGGAACACTA
gi|27 : TTTAACATAA-TATTAACCGGCACATTCATACCCTTTGTCATAGGGGGTA-ATTTCCAAGTCGTCCA-AAACA-GGGAAAATAATAAT-GG--GGAAGTTAT---CTCCTCTTGAAACTATCCAATATCGCAGCTAAAAAAC-TCT-GATAAGA--TGATGAATTGTTTTTCACACGAGTTAACATCTTTGTACAGATAGATCG
gi|28 : TTCTTG---CCAATGATT--------TATA---TGAATATCTCTTAATCTATTCCTTAACAAAGGTATGAACAAGTT----TACAAAAACTGATTCCGGATACATCCATATTTCTGCAAAGCC
gi|29 : ttctgtacaaagacaacgaagtgtggattaaaatagtTTTGTGAGAGTGTTATCTTGGTATTTAGAAATAATCAT---AC-AA-AATTATTTTAAGCATATA-T-CAATACAAATTTAAATTACAACA----CAATGTATGCTAC-ATT-AAA-CTG-TTAAACGAGAATCCCTGAGTTTGAAACCCTTAATACAATAAGCTGCAAGTTCATTTAAAATCGA--TT-TTTTTGGTCAactttggcacattcgaagaccagttttttgcattctggtttgtt
gi|3 : atATAA-----------------TGTGTTTGAA------TATATTGCTTACGCAGA-CATTGCTTGTAATAAGGACAATTAAA-ATAAAAATAATATTCGTCTTCTACATCGTTTTTGTCA------------TTTCT---ATATCTATGT--TT----CTG-TGACGTCCGGTTTCTACGTACAATCTGTGAGATGATAATCTTATTTAAGCTATAACATTTTT-TGTTCAATATT-----AACAT------------GTAGTCTGACATTTGGTAA------GTATGTTTCATATTGCCGTGCA--------A--A-A--TC--------------AACGA---ACA-GTGGCTTAATCTATTTTCATGACTGGT--TTG-------TGTG---A--ATGTCTCTCAATATATTCCTTAATACAGGTATGCA-TATTTTTACAATA---ACTGATTCCGGAG-TGTCGATATTTCTGCAAAACC-ACATTGGCATAGTAAATT---TCGCACTT--AAGCAGA-CCA-ATTGTTG--CATTCTAGTTTGTTTCAATTTC----ACATCT----CTATACATT-TTAACTGTGTTTGTAACGCAATTTATCTTTTTT-TTC---TTCATACAA----ATAGAGT-----------CAATATTTCAT-TAT--TCATATGTATGTACCTTGCAATTTACCCGTTTCTGAATAAAAAGATCA--TTAATCATGTGAAGACATATGTACATTAAGCGTCTATTTACAGAA
gi|30 : atatgatactgggtttgtggatTTTGTGAGAGTGTTATCTTGGTATTTAGAAACAATCAT---ACCAA-AATTGTTTTAAGCATAAACT-CAATACAAATTTAAATTACAATAAATACAATGTATTCTACTGTT-AAA-CTG-TTAAACGAGAATCTCTGAGTTTGAAACCCTTAATACAATAAGTTGTAAATTTGTTTttgtctatg
gi|31 : atGAGTGTTATCTTGGTATTTAGAAACAATAAT---AA-AATAAATATTTAAACCATAATCT-CATTACAAATTTAAATTACGATACA-A-AGTTT-TTCTGC-ATT-AAA-CTG-TTAAAAGAGCATCTCTGAGTTTGAAACCCTTAATACAATAAGTTGCAA
gi|32 : tttttttTTTGTGAGAGTATTATCTTGGTATTTAGAAACAATCAT---AC-AA-AATTATTTTAAGCATAAACT-CAATACAAATTTAAATTACAATAAATACAATGTATTCTAC-ATTAAAA-CTG-TTAAACGAGAATCCCTGAGTTTGAAACCCTTAATAC
gi|33 : tatTTTGTGAGAGTGTTATCTTGGTATTTAGAAACAATCAT---AC-AC-AATTATTTTAAGCATAAACT-CAATACAAATTTAAATTACAATAAATACAAGGTATTCTAC-ATT-AAA-CTG-TTAAACGAGAATCCCTGAGTTTGAAACCCTTAATAC
gi|34 : tatTTAAGCATAAAAT-CAATACAAATTTAAATTACAATA----CAATGTATTCTAT-ATT-AAA-CTG-TTAAACGAGAATCCCTGAGTTTGAAACCCTTAATACAATAAGTTGCAAGT
gi|35 : gcttagtaatttgacagtcttcatcaaaccatttggtagtgTTTGTGAGAGTGTTATCTTGGTATTTAGAAACAATCAT---AC-AA-CATTATTTTAAGCATAAACT-TAATACAAATTTAAATTACAATAAATACAGTGTATTCTAC-ATT-AAA-CTG-TTAAACGAGAATCCCTGAGTTTGAAACCCTTAATA
gi|36 : atTTTGTGAGAGTGTTATCTTGGTATTCAGAAA-AATCAT---ACAAA-AAATATTTTAAGCATTAACT-CAATACAAATTTTAATTACA--AAA-ACAATGTATTCTAT-ATT-AAA-CCA-TTAAACGAGAATCCTTGTGTTTGAAACTCCTAATA
gi|37 : atTTTGTGAGAGTGTTATATTGGTATTTAGAAACAATCATTAAAT-AA-AATT--TTAAAGCATAAACT-CAATACAAATTTACATTACAATA----CAATGTTTTCTAC-ATT-AAA-CTA-TTAAACAAGTATTCCTGAGTTTGAAACCCGTAAT
gi|39 : ttAGAGT-TTATCTTGGTATTTAGAAACAATCATA--AC-AT-AATTATTTAAAGCAT-TACTGCAATACAAATTTAAAT---AAAAAA-ACA---------GC-ATT-AAA-CTGTTTAAA-----------GAGT----AACCCTTGCTACAATAAGTTACAAG
gi|4 : GCTAGTTTATGTGATGATAATCGTATTTTAGCTATAGTGTTTCTATATTTTACATTTTCTAAACATAAATA---AGTAGAAG-CTCAAAT-------------GTCTGTTTTAAATGTCTGTATA--------TTTATA--TA--------------AA-GATGTACATGTGACC--ATACATTCCCT---CCAAT--TTGCAA----TGTA---T--ATATCTCTAAGCCTAGTCCGTAATAATGGTATGAAACAGTT----TATATTGACTGATTCGGGAAACATCCAAACGTCTGCATAACCTGCATT---AT-GTAAAATAGATCGAACTTTAAAG--GC-CCA-ATT-TTGAACATTGTGATTTTCATCAATTTC----CCTTCTTTGACTATGTATTATTGACCGTA---G-GATACAATT-ATCTTGCTT-ATT---CCCATGTAATTTAAT
gi|40 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaTTTCACCTCATCATAC--ATGGATCTGATTAATG-AGAATAATTTGCCATTTG-T-CTCGGGTCTT--ATTAATTTAAACCATACACTATTTCGGCCAATTAAATCATTGGCTTTTTTGAAGTCCACGA---
gi|41 : CGT---GTGAGTCAAATAGGTTGAAC--ATGTTTATGTTTA-TAG-G-T---GTGTGCTAATAT-TTT--GTTGCGC-TAAACAATGTACTTATTGTACGCAGGGCT---TTACCAG--ATA
gi|42 : CAATTTCATTTAAGTCACAACGTCAACATTTACTTTGATCTCT-TGC--TTGATGTTGATGTCGTCcagtacccgc
gi|43 : gaaatgaTTTTGAGAGTGT-ATCTTGGTATTTAGAAACAATCAT---AA-AATAATTATTTTAAGCATAA
gi|44 : attaCTATTTCGGCCAATTAAACCATTGGCTTTTTTGAAGTCCACGA---A
gi|45 : a----CGAATCCCCATCTTTCACAACCATAATTTAAtaatt
gi|5 : GCTAGTTTATGTGATGATAATCGTACTTTAGCTATAGTGTTTCTATATTTTACATTTTCAAAACTTAAATATTAAGAAGAAGGTTCAAAT-------------GTCTGTTTTAAATGTCTGTATATATATATAT--ATA--TA--------------AA-GATGTACATGTGACT--ATACATTCCCG---CTAAT--TTGCAA----TGTA---T--ATATCTCTAAGCCTAGTCCATAATAATGTTATGAAACAGTT----AATATTGACCGATTCTGGAAACATCCAAACGTCTGCATATTCTGCATT---AT-GTAAAATCGACCGGACTTTAAAG--GC-CCA-ATT-TTGAAGGTTATGAGTTTCGTAAATTTC----TCTTCTTTGgccatatg
gi|6 : ataagtttgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaATTTCGGTCAATTAAATCATAGGCTTTTTTGAAGTCCACAA---AACAACAGAATAATTTATTTTTACCGC---CAAGTTGCTT----TTCA--------------GTCAGTGAATTAAGGATGAATATAGCATCCACCGTACTCTAATTGGGTTTAAACCCGAACTGAGCGACAGTCAACATATCATTTTCGGCGGCCCA-TTTTTTTAATCGCTCATTGATTATAACAGTGAAAAACTTGGCA
gi|7 : ACATTTTCTAAACTTAATTA---AGATGACGGTTCAAAT-------------GCCTGTTTTAAATGTCTGTATA-----------------A--------------AA-GATGTACATTTGACT--ATATCTTTACG---CCAAT--TTGCAAAATATATA---T--ATATATCTAAGCCTAGTTCGTGATGATGGTATGAAACAGTT----AATATCGACTGATTCTGGAAACATCCAAACGTTTGCATATCCTGCATT---AT-GTAAAATAGATCTGACTTTAAAT--GCTTTACATT-TTGAGAATTGTGAGTTTCGTCAATATT----TCTTCTTTGACTATGTATTATTGATCGTG---G-AATACATTT-ATCTTGCTT-AAC---CCCATGTAATTTAGTCAAGTATTTAACAATACAAT-TCTCAAATATCTTGCTATATA---TAGTGGATATCGACCTAACTCGGAATATAAAGATAA--AAATTT-TGT--AGATAATTTTACATTAAGaaacaacttgttatagttagactctatataattatttgggtccgttgttgtcctctttttaaataatggtataatgacaccagttgaccaactacgtggaaattttttttttatctaatatatgattgaacaatttagccagcggctgtgaaattacatcaaaactttccttaaagtattcgtataaaatattatcgaacaagcatgatttattggtattt
gi|8 : CAACAA---AAGCATCAAATAGATTAAAC--AA-TATATT-T-ACTGGCG-C---CT----TAACCT-TTCTTGTCATGGACAATAGAC-AGCTCATCGACTTAATTGCT---TTATCGGCCATAGC--ATTTG---TCGCT---TGTGCAA---ATGA-CCCTCCACTCG-ACATT-TTTAATCCGAGATCATTGAAAC-AGCTTACAGTTTCAATCACCTGACCCGCGTATGTCCA-------CAATA-CATTTCGTGCAAGTTGTCCACTTTTCCTGAATATAACAAG--TTTT-TTTTTTTTAATGTTAACGGTTAAATTCCAATCTTCGCAATAGTGTTCTAGTTTATTTAACGACGACTGGAGTCCCTCGGCACTT---TCAGATAGCAAAAAT---GCATCGTCCGCGAAACAG-AGCAGGTAAATTTGTAGCTGg
gi|9 : atacctcatttgagtaaaacaatactggccTACATTTTCTAAACATAAATA---AGTAGAAGGCTCAAAT-------------GTCTGTTTTAAATGTCTGTATA--------T--ATACATA--------------AA-GATGTACATGTGACC--ATACATTCCCT---CCAAT--TTGCAA----TGTA---T--ATATCTCTAAGCCTAGTCCGTAATAATGGTATGAAACAGTT----AATATTGACTGATTCGGGAAACATCCAAACGTCTGCATAACCTGCATT---AT-GTAAACTCGATCGAACTTTAAAG--GC-CCA-ATT-TTGAACATTGTGATTTTCATCAATTTC----CCTTCTTTGACTATGTATTATTGACCGTA---G-AATACAATT-ATCTTGCTT-ATT---CCCATGTAATTTAATGAAGTATTTA-----ACAAT-TCTCAGATATCTTCCTATATA---AAGTGG----------AACTCGGAATATAGAGATAA--AG
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): AAATGATATTCATCGTTGTAGTTGCAAAGTACCATTTTTTTTTTCATTTATATCTAGTATATTTCTGTCACGTCCGTTCTAAATGTACACACTTTTTTAAGCTATTACATTTTCATGATTTCATTGTTCAATTTTAACAAGTATTCTGCTATTTGGTAAGCATGTTTGATAGTGCTGTACAAAATAAGCGAGTAGTGGTTTAAATTTTTCTTCTCAATGGTCTATATGAATATTTCTCAATCTATTCCTTAACAATCCTATGGA
Unaligned ( gi|38 ): GTGGTCTGATATTTGGTAAGTATGTTTGTACAATACATTTCGCACTTTAGAAAACCAATTGTTTTGCATCCTGGTATGTTTCAATTTCTTGCATCTGTACATTTTTAATGGTATTTAAAACACAAGACTTTTTTCTTT
Unaligned ( gi|46 ): TAGTATTTGTCTCCAATACATAAACCAGAGACATAAACA
Alignments
lowQualScore : 1 222 44444444444444444 111111 1111 1 1 3333333333 3333333333333 444444444444444444444444444444444 22222 111 11 1 11 1 3333333 11 1 777777777777777 111 3333333333333333333333 1111 11 222222222 11111 1 222222 33 1 11 888888888888888888888888 1 22222 1111 333333333333 11 1111 11 1111 11 555 11 111 11 1 11 1 11 111 6666666666666666666666666666666666666666666
lowQualScore : 777 5 3 2 2 1 666 2 2 2 2 2 2 1 99 6 99 1 66666666666666666 999999 4444 0 5 2 0 9999999 7 3 4444444444 7 1 777 2 5555555555555 555555555555555555555555555555555 55 7777 44 7777 555 44 7777 1 1 666 3 0 55 3 3 3 4 7777 777 4 4 9999999 11 00000 8 0 3 444 66 5 3 1 11 0 33 1 0 1 1 5 2222222 1 88 5 666666666666666 1 1 0 111 77 5 5 3333333333333333333333 0 5 1 1 55555 1 33 22 888 77 0 0000 11 000000000 33333 6 1 6 6 0 3 8 1 1 1 1 555 7 99 3 333333 1 5 555 77 0 0 11 1 6 888888888888888888888888 66 4 0 0 666 0 1 2 55555 0 1111 777777777777 0 33 9999 8 4 4 11 8 999 0000 11 000 1 1 8 3 1 00 8 0 111 99 1 4 1 11 1 3 0 4 77 55 0 33 0 0 9 1 1 111 1 1 5555555555555555555555555555555555555555555 0 7 1
lowQualScore : ... . . . . . ... . . . . . . . .. . .. . ................. ...... .... . . . . ....... . . .......... . . ... . ............. ................................. .. .... .. .... ... .. .... . . ... . . .. . . . . .... ... . . ....... .. ..... . . . ... .. . . . .. . .. . . . . . ....... . .. . ............... . . . ... .. . . ...................... . . . . ..... . .. .. ... .. . .... .. ......... ..... . . . . . . . . . . . ... . .. . ...... . . ... .. . . .. . . ........................ .. . . . ... . . . ..... . .... ............ . .. .... . . . .. . ... .... .. ... . . . . . .. . . ... .. . . . .. . . . . .. .. . .. . . . . . ... . . ........................................... . . .
lowQualScore : 333 3 3 1 7 9 111 8 7 7 7 7 7 0 22 7 22 4 77777777777777777 222222 2222 8 5 5 7 3333333 3 3 7777777777 3 0 000 4 0000000000000 111111111111111111111111111111111 00 6666 66 1111 888 66 7777 0 0 444 6 5 00 6 6 6 5 7777 888 4 4 2222222 88 00000 0 8 2 000 66 0 2 0 00 0 88 0 8 0 0 5 5555555 0 55 5 222222222222222 0 0 7 777 99 7 0 6666666666666666666666 1 0 1 0 99999 0 55 11 888 99 6 8888 00 333333333 77777 7 0 7 7 3 7 0 4 0 0 0 000 8 22 5 000000 0 0 000 55 0 7 00 0 5 000000000000000000000000 88 2 0 2 555 8 0 5 00000 2 2222 888888888888 8 88 5555 8 6 4 00 0 000 4444 00 000 0 4 0 2 0 66 0 6 666 22 0 2 4 00 4 2 0 2 55 88 0 88 2 2 0 0 0 777 0 0 8888888888888888888888888888888888888888888 7 3 0
consensus : TTTGTGAGAGTGTTATCTTGGTATTTAGAAACAATCAT---AC-AA-AATTATTTTAAGCATAAACT-CAATACAAATTTAAATTACAATAAA-ACAATGTATTCTAC-ATT-AAA-CTG-TTAAACGAGAATCCCTGAGTTTGAAACCCTTAATACAATAAGTTGCAAGTTTGTTTAAAATCGA--TT-TTTT--GTCAATATTAAGAAGGTTAATAAATTTAAACATGCTTGGATGAGTTGAATAA-----------------TATTTAGGTA------TATATAATTTTCTCAGATCATTA----TAAAATGGGCAAATAAGTATGAAAATGGTATTCGTCTTCNACGTCGTTTAAGTCACAACGTCAACATTTTCTTTGATCTCT-TGC---TT--T-TTGATGTCGTCCNGTTTCTACGGCTAGTTTATGTGATGATAATCGTATTTTAGCTATAGTGTTTCTATATTTTACATTTTCTAAACATAAATA---AGNAGAAGGCTCAAAT-------------GTCTGTTTTAAATGTCTGTATA--------T--ATA--T-A--------------AAGATGTACATGTGACC--ATACATTCCC---GCCAAT--TTGCAA----TGTA---T--ATATCTCTAAGCCTAGTCCGTAATAATGGTATGAAACAGTT----AATATTGACTGATTCNGGAAACATCCAAACGTCTGCATANCCTGCATT---AT-GTAAAATCGATCGGACTTTAAAG--GC-CCA-ATT-TTGAANATTGTGATTTTCGTCAATTTC----CCTTCTTTGACTATGTATTATTGACCGTA---G-AATACAA-TTATCTTGCTT-ATT---CCCATGTAATTTAATGAAGTATTTA-----ACAAT-TCTCAGATATCTTCCTATATA---AAGTGGAAATCGACCTAACTCGGAATATAAAGATAA--AGAATT-TGT--AGACANTTTTACATTAAGNANCTATTTACAAAACATTTTTGTACTCTGTGAATACNCTCAATGTTGTCTAGT----CG-AA-CCCCATACTTCACAACTATAATTTAATACTGATACAACGT---ATGCGTCAAATAGGTTAAAC--AT-TATATGGT-A-TAG-G--C-TT----CAATAT-TTTTTGTTACGCTAAACA-ACGAACTCATNGCCCGNAGNGCT---TTACCAG--ATAGCGTATTTGCTCGCA---TNN---ATAA---NNGA-CCCNCCACTTG-ACATA-ACTATTCCTAGATAATTGAAAC-TACTAACAATTTCNATCTCCTTNCCANCGTATGTCCATTTA--TCATTAGCACTTAATAC------CCCACCTTTNCGGAACACTACTAGTTTT-GTTTTATTAACGTTAACCGTTAAGTTTCATTTTTCACAATAGGAATATAAATTATTTAAAGATTNCTGGAGTCCCTC----TTTT-----C-GA---CA-AATTACGGCATCGTCCGC-AAACAGCAACAGATAAATTGGTAACT-----GTTCAAC-AG-AATACCAA-CCG--ACATTAATATCCT--GTT---GGAGATGCATTTCAANATCATT--CA-AAAAA-GNGAAAATAA-AATCGG--AGAANTGATCTCCCCTTGCAATAATCCAATGTCGCA-CTCGAANACATCT-GATAAAA--TGTTCAGNTGTTTTACACACGATTTGACCTCGTTATAC--ATAGATCGAATTAGTG-CGAATAGTTTGCCGTCNATACTTGA-TTTG--ATCAGTTTAAACCACAAGCTATTTCGGTCAATTAAATCATANGCTTTTTTGAAGTCCACGA---AGCAACAGTACAANTTNTTCTTATTGC---CAGGTTGTT-AAT-TTCAAAATGCTGTG---TCG-ATATAAATATTGCATCCACGGTACTATAATTAGGTTTAAAACCGAATTGAGAGTCCGTTAGAATGTCATTTTGTGAAGACCATTTTTTTAAACGCTCATTTAATATAACGGTAAAAAGCTTNGCA
Reference ( family-805 ) : TTTGTGAGAGTGTTATCTTGGTATTTAGAAACAATCAT---AC-AA-AATTATTTTAAGCATAAACT-CAATACAAATTTAAATTACAATAAA-ACAATGTATTCTAC-ATT-AAA-CTG-TTAAACGAGAATCCCTGAGTTTGAAACCCTTAATACAATAAGTTGCAAGTTTGTTTAAAATCGA--TT-TTTT--GTCAATATTAAGAAGGTTAATAAATTTAAACATGCTTGGATGAGTTGAATAA-----------------TATTTAGGTA------TATATAATTTTCTCAGATCATTA----TAAAATGGGCAAATAAGTATGAAAATGGTATTCGTCTTCGACGTCGTTTAAGTCACAACGTCAACATTTTCTTTGATCTCT-TGC---TT--T-TTGATGTCGTCCNGTTTCTACGGCTAGTTTATGTGATGATAATCGTATTTTAGCTATAGTGTTTCTATATTTTACATTTTCTAAACATAAATA---AGNAGAAGGCTCAAAT-------------GTCTGTTTTAAATGTCTGTATA--------T--ATA--T-A--------------AAGATGTACATGTGACC--ATACATTCCC---GCCAAT--TTGCAA----TGTA---T--ATATCTCTAAGCCTAGTCCGTAATAATGGTATGAAACAGTT----AATATTGACTGATTCNGGAAACATCCAAACGTCTGCATANCCTGCATT---AT-GTAAAATCGATCGGACTTTAAAG--GC-CCA-ATT-TTGAANATTGTGATTTTCGTCAATTTC----CCTTCTTTGACTATGTATTATTGACCGTA---G-AATACAA-TTATCTTGCTT-ATT---CCCATGTAATTTAATGAAGTATTTA-----ACAAT-TCTCAGATATCTTCCTATATA---AAGTGGAAATCGACCTAACTCGGAATATAAAGATAA--AGAATT-TGT--AGACANTTTTACATTAAGNANCTATTTACAAAACATTTTTGTACTCTGTGAATACNCTCAATGTTGTCTAGT----CG-AA-CCCCATACTTCACAACTATAATTTAANACNGATACAACGT---ATGCGTCAAATAGGTTAAAC--AT-TATATGGT-A-TAG-G--C-TT----CAATAT-TTTTTGTTACGCTAAANA-ACGAACTCATNGCCCGNAGNGCT---TTACCAG--ATAGCGTATTTGCTCGCA---TNN---ATAA---NNGA-CCCNCCACTTG-ACATA-ACTATTCCTAGATAATTGAAAC-TACTAACAATTTCNATCTCCTTNCCANCGTATGTCCATTTA--TCATTAGCACTTAATAC------CCCACCTTTNCGGAACACTAC--GTTTT-GTTTTATTAACGTTAACCGTTAAGTTTCATTTTTCACAATAGGAATATAAATTATTTAAAGATTNCTGGAGTCCCTC----CTTT-----C-GA---CA-AATTACGGCATCGTCCGC-AAACAACAACAGATANATTGATAACT-----GTTCAAC-AG-AATACCAA-CCG--ACATTAATATCCT--GTC---GGAGATGCATTTCGATATCATT--CA-AAAAA-GNGAAAATAA-AATCGG--AGAA---ATCTCCCCTTGCAATAATCCAATGTCGCA-CTCGAANACATCT-GATAAAA--TGTTCAGNTGTTTTACACACGATTTGACCTCGTTATAC--ATAGATCGAATTAGTG-CGAATAGTTTGCCGTCGATACTTGA-TTTG--ATCAGTTTAAACCACAAGCTATTTCGGTCAATTAAATCATANGCTTTTTTGAAGTCCACGA---AGCAACAGTACAANTTNTTCTTATTGC---CAGGTTGTTNAAT-TTCAAAATGCTGTG---TCA-GTATAAATATTGCATCCACGGTACTATAATTAGGTTTAAAACCGAATTGAGAGTCCGTTAGAATGTCATTTTGTGAAGACCATTTTTTTAAACGCTCATTTAATATAACGGTAAAAAGCTTNGCA
gi|1 : TTTGTGAGAGTGTTATCTTGGTATTTATAAACAATCAT---AC-AA-AATTATTTTAAGCATAAACT-CAATACAAATTTAAATTACAATAAATACAATGTATTCTAC-ATT-AAAACAG-TTAAACGAGAATCCCTGAGTTTGAAACCCTTAATACAATAAGTTGCAAGTTTGTTTAAAATCGA--TT-TGTT--GTCAATATTAAGAAGGTTAATAAATTTAAACATGCTTGGATGAGTTGAATAA-----------------TATTTAGGTA------TATATAATTTTCTCAGATCATTA----TAAAATGGGCAAATAAGTATGAAA-TGGTATTCGTCTTCGATGTCATTTAAGTCACAACATTAACATTTTCTTTGGTCTCT-TGCAATTT--T-TTGATGTCGTCCTGTTTCTATAGCTAGTTTATGTGATGATAATCGTATTTTAGCTATAGTGTTTCTATATTTTACATTTTCTAAACATAAATA---AGTAGAAAGCTCAAAT-------------GTCTGTTTTAAATGTCTGTATA--------T--ATA--T-A--------------AAGATGTACATGTGACC--ATACATTCCC---TCCAAT--TTGCAA----TGTA---T--ATATCTCTAAGCCTAGTCCGTAATAATGGTATGAAACAGTT----AATATTGACTGATTCGGGAAACATCCAAACGTCTGCATAACCTGCATT---AT-GTAAAATCGATCGAACTTTAAAG--GC-CCA-ATT-TTGAACATTGTGATTTTCATCAATTTC----CCTTCTTTGACTATGTATTATTGACCGTA---G-AATACAA-TTATCTTGCTT-ATT---CCCATGTAATTTAATAAAGTAATTA-----ACAAT-TCTGAGATATCTTCCTATATA---AAGTGGAAATCGACCTAACTCAGAATATAGAGATAA--AGAATT-TGT--AGATAATTTTACATTAAGGACCCATTTGCAAAAC-TT-------TCTATGAATACGTTCAATGTTGTCTAGTTTTGCGAAA-CCCCATACTTCACAACTATAATTTAAAACTGATAAAACAT---ATGCATCAAACAGATTAAAC--AT-TATATGGT-A-TAGAA--C-TT----CCATAT-TTTTTGTTATATCAAAAA-GCGAACTCATAGCTCTAAATGCT---TTACCTG--AAAGCATATTTG-TTGCA---TGA---ATAA---TAGA-CCCCCCACTTG-ACATA-ACCATTCCTAAATAGTTAAAAG-TACTAACAATTTCTATCTCCTTTCCATCATATAACCATTTA--TCATCAGCACTTAATAC------CCCACCTTTACGGAACACTACTATTTTT-GTTTTATTAACATTAACCGTTAAGTTTCTTTTTTTACAATAGGAATATAAATTATTTAAAGATTTCTGGAGTCCTTC----TCTTGTCTCC-GA---CATAATTACGGCATCGTCCGC-AAACAACAACAGATATATTGATAACT-----GTTCAAC-AGAAATACCA-------ACATTAACATTCT--GTT---GGAGATGCATTTCGATATCATT--CAGAAAAA-GAGAAAAAAA-AATCGG--AGAAGTGGTCTCCCCTTGCAATAATCCAATGTTACA-CTCGAATACATCT-GATAGAC--TGTTCAGGTGTTTTACACACAATTTGACCTCGTTATAC--ATAGAACGAATTAGTG-CAAAAAGTTTGCCGTCAATACCTGA-TTTG--ATCAGTTTAAACCACAAGCAATTACGATTTAGTAAATCATATGCTTTTAAATAATCCACGA---AGCAACAGTACAATTTCTTCTTA--------------TTAAAT-----AAATGCTAT----TCA-ATATAAATATTGCATCCACGGTACTATAATTAGGTTTAAAACCAAATTGCGAGTCCGTTAGAATGTCATTTTGTGAAGACCA-TTTTTTAAACGCTCATTTAATATAACGGTAAAAAGCTTTGCA
gi|10 : ACATTTTCTAAACATTAACA---AGAAGAAGGTTCAAATGTCTGTTTTAAATGTCTGNNNNNNNNNNNNNNNNN--------N--NNN--N-NNNNNNNNNNNNNN-AAGATGAAGATGTGTCC--ATACATTCCC---GCCAAT--TTGCAA----TGTACTAT--ATATCTCTAAGCCTAGTCTGTAATAATGGTATGAAGCAGTT----AATATTGACTGTTTCTGGAAACATCCAAACGTCTGCATATCCTGCATT---AT-GTAAAATTAATCGGACTTTAAAG--GC-CCA-ATT-TTGAAAATTGTGATTTTCGTCAATTTCTCTTCCTTCTTCGACTATGTATTATTGACCATA---G-AATACAA-TTATCTTGCTT-AAT---CCCAGGTAATTTAATGAA
gi|11 : TTTAGCTAAAGTGTTTCTATATTTTATATTTTCTAAACATAAATA---AGTAGAAGGCTCAAAT-------------GTCTGTTTTAANNNNNNNNNNN--------N--NNN--N-NNNNNNNNNNNNNNNAAGATGTACATGTGACC--ATACATTCCC---TCCAAT--TTGCAA----TGTA---T--ATATCTTTAAGCCTAGTCCGTAATAATGGTATGAAACAGTT----AATATTCACTGATTCGGGAAACATCCAAACGTCTGCATAACCTGCATT---AT-GTAAAATCGATCGGACTTTAAAG--GC-CCA-ATT-TTGAACATTGTGATTTTCATCAATTTC----CCTTCTTTGACTATGTATTATTGACCGTA---G-AATGCAA-TAATCTTGCT
gi|12 : GTTTTTACATTTTACATTTTCTAAACTTAAATA---AGAAGAAGGTTCAAAT-------------GTCTGTTTTAAATGTCTGTATA--------T--ATA--T-A--------------AA-ATGTACATTTGACC--ATACATTCCC---GCCAAT--TTGCAA----TGTA---T--ATATCTCTAAGTCTAATTCGTAATAATGGTATGAAATGGTT----AATATTGACTGATTCTGGAAACATCCAAACGTCTGCATATCCTGCATT---AT-GTAAAATCGATCAGACTCTAAAG--GC-TCA-ATT-TTGAAAATTGTGAGTTTCATCAATTTC----TCTTCTTTGACTGTGTATTATTGACCGTA---G-AATACAA-TTATCTTGCTTAATTAACCCCATGTAATTTAATGga
gi|13 : ---AAGTGAAAATCTATTTAACTCTGCGTATAAAGATTATTGGTATT-TGT--CAACGTTTCAACATTGATTAATTATTTACAAAACATTTTTGTACTCTGTAAATACCCTC--TG-TGT----------------CCCACACCTCCCAACTATAGTGTAATATAGATACATTATCAGATTCATAAATTAAATTGAACAAAC-TGT-TGAT-G-CAT-A--CATT----CAAC-T-CTTTTGTCACATTAAACA-ACTGGCTCACAGCCCGTAACACT---TTACCAG--CCAATGTATTTGCTTGCA---GCT---ATAATGTTAGA-ACCACCAAGTATAGATACATTATTCCCAAATAATTGAAA
gi|14 : ttTTAAAT--AT-TATATGGT-A-TGG-AA-C-TT----CCATAT-TTTTTGTTATATTAAAAA-GTGAACTCTTCGCTCTAAGTGCTAGATTATCA
gi|15 : tatttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTGTGAGATTGTTTTCTTGATATTTATATACAATCAT---AA-AATAATTATTA-AAGCAGAAATT-CATTACAAAATTAAATTACAATA----TAATGTTTTCTAC-ATT-AAA-CTG-TTAAACGAGTATG---GAAATCTATACATGTAATGCCATAAGTTACACGTTTGTATAAAATTGA--TT-TTTT--GTCAATATTAAGAAAGTTTATACATTTAAACATACATGGACGAGTTGAATAATATTTAGGTATGTATAATATTTAGGTA------TGTATAATTTTCTCAGATCATTA----TAAAATGTGCAAATAAATAtctgggaaaaacat
gi|16 : TTTGTGAGAGAGTTATCTTGGTATTTAGAAACATTCAT---AA-AATAATTATTTGAAGTATAAACT-CAATACAAATTTACATTACAA---A-ACAGAGTTTTCTAC-ATT-AAA-CTG-TTAAACAGGTATCCCTCAGTTTAAAATCCTTAATACAATAAGTTGCAAGTTTGTTTAAAAAAAAAATT-TTTT--GTCAATATTAAGAAAGTTAATTAATTTAAACATGCTTGGATGAGTTGAATAA-----------------TATTTAGGTA------TATATAATTTTCTCAGATCATTA----T-AAATTTTCAAATAAGTATGAA
gi|17 : TTTGTGAGAGTGGTTTCTTGGTATTTAGAGACAATCAT---AA-AATACTTATTTAAAGCATAAACT-CAATACATATTTATATTACAA-----ACAATGTTTCCTGC-ATT-AAA-CCG-TTAATCTAGTATCTCGGAGTTTGAAACCCTTAATACAATAAGTTGCAAGTTTGTTTAAAATT-A--TT-TTTT--GTCACTATTAAGAATGTTAATAAATTTAAACATGCTTGGATGAGTTGAATAA-----------------TAGTTAGGTATATATGTATATACTTTTCTAAGATCATTA----TAAAATAGGAAAATAA
gi|18 : aTTTGTGAGAGTGTTATCTTGGTATTTAGAAACAATCAT---AC-AA-AATTATTTTAAGCATAAACT-CAATACAAATTTAAGTTACAATA----CAATGTATTTTAC-ATT-AAA-CTG-TTAAA------TCCCTGAATTTGAAACCCTTAATACAATAAGTTGCAAGTTTGTTTAAAATCGA--TTATTTT--GTCAATATTAAGAAGGTTAATAAATTTAAACATGCTTGGATGAGTTGAATAA-----------------TATAAAGGTA------TATATAATTTTCTCAGATCATTA----TAAAATGGGCAAATAAGTATGA
gi|2 : atTTCCA-CTCCTTGTAAATGCATA-ACATTTA--TCATCAGCACTTAATAT------CCCGCCTTTGCGGAACAATACT-GTTTTTGTGTTATTTACATTAACCATTTAGTTTCATTTT--ACAATTGGAATATAAACTATTTAAAGATTCCTGGAGTCC---------------------------ATTACAGCAGCATCCGC-AAATAACAACAGAAAGATTGATAACT-----GTTCAAC-AG-AA-AC--A-CCA--ACATTAATATCCT--GTT---GGATATGCATTTCAATATAATT--CC-GAAAA-GAGGAAATAA-AATCGG--AGAACGGATCTCCCCGTGCAATAATCCAATGTTACA-CTGGAATACATTT-GATAGAC--TGTTCA-TTGTTTTACACACAATTTGGCCTCGTTTTAC--ATAGAACGAATTAGTG-CGAATAGTTAACCATCAATACTTGA-TTTG--ATCAGTTTAAACCACAAGC----------AAGTAAATCATATGCTTTTATATTATCCACGA---AGCAACAGTACACGTTCTCCTTATTACATACAGGTTGTTCAATGTTCAAAATATTGAG---TTGTATATAAATATTGCATCGTAGGTACTATAATTAGGTTTAAAACTAAATTGAGAGTCCGTTAGATTGTCATTTTGTGAAGACCATTTTTTTAAACGCTCATTTAATATAACGGTAAAAAGC
gi|20 : TTCAACATCATT--TA-CAAAATGTGAAAA-------CGT--A-------TCTACCCATGCAATAATCCTAAATTGCA-ATCAAAGAAATCTTGAGAAAA--TATTCAGATGTTTGACACA--GTCTAATTTCGTTATAA--ATGGATCGAA-TAATACCGAGTAATTTACCCTCT-TA-TTCA-TTTGTTATCAATTTGAATCAAAATCCATTTCTGTATATTGAATCAAACGCCCTTTTCAGATCTATAAGACGGCAATAATACAAATTAGTTTTGTTgtt
gi|21 : ACATAAATA---AAAAGAATGTTCAAAT-------------ATCGGTGTCAAATGTCTGTATA--------T--ATA--T-A--------------AAGATGTACATGTGACC--ATACATTCCC---TCCAAT--TTGCAA----TGTA---T--ACATTTCTAAGCCTAGTCCGTAATAATTATGTAAAAccttat
gi|21 : ATT---AT-GTAAAATCGATCGGACTTTAAAG--GC-CCA-ATT-TTGAA--TTGTGAATTTTGTCAATTTC----TCTTCTTTGACTATATATTACTGACCGTA---G-A----------------------------ATGTTATTTAATGAAGTATTTA-----ACAAT-TCTCAGATtcgatcggactttaaaggcccaattttgaattgtgaattttgtcaatttctcttctttgactatatattactgaccgtagaatgttatttaatgaagtatttaacaattctcagat
gi|22 : acataaataaaaagaatgttcaaatatcggtgtcaaatgtctgtatatatataaagatgtacatgtgaccatacattccctccaatttgcaatgtatacatttctaagcctagtccgtaataAACGT---ATGAGTCAAATAGGTTAAAC--AT-TATATTG--A-TAG-GTAT-TT----C-ATATGTTTTTGTTACGCTAAGCA-AGGTACTCATTGCCCGCAAGGCT---TTACCAG--ATAGAG----TGCTCGCGTTTTTA---ATAA---ATGA-CCCTCCACTTG-ACAAA-ACTATACCTAGATAATTGAAAC-TGTTGACTATTTCAAT-TTCTGAC--TCGGATGTCCATTTA--TCATTTTTACTTAACAT------CCCACCCTTTC-GAAC---AT--GTTTT-
gi|23 : ACAT---ATGCGTCCAATAGGTTAAAC--AT-TAT-TG-T-A-AAT-G--TATT----TAATAC-TGTTT-TCACGCAAAACA-TTGGACTTGTTGACCGCAAGAAT---TTACCAG--ATAGAGT----GCCCACA---TTTTTCATAA---ATGA-TCCACCACTTG-ACACT-ACTATACCTAGATATATAAAAC-TATTAAATATTT-TATTTCTGTTGCGGCATAGGTCCATTTATTTCGTTG--ACTTAACAaaacat
gi|24 : TCACTC----TTTC-----T-GAA--TA-GATAACAGCATCATCTGC-AGAAAGC------TAAAATGGTAA-TAAAAAGTTGAGCTAA-AAT--CAGGCTG--GTATTATGATCAT--GTT---GAAGAAAGAGTTCAAAGACAGTAACG-AACAA--TGACAGTAC-AATCGGTAAGAGT--ATCTCTCCTTGTAAGGATCCAATTTCGCA-ATTGTAGA---------AAAAGTTATTTATATGTTTAACACACgc
gi|25 : agaATA--------T--ATA--T-A--------------AAGATGTACATGTGACC--ATACATTCCC---GCCAAT--TTGCAA----TGAC---T--ATATCTCTAAGCCTAGTCCGTAATAATGGTATGAAACAGTT----AATATTGACTGATTCGGGAAACATCCAAACGTCTGCATAACCTGCATT---AT-GTAAAATCGATCGGACTTTAAAG--GC-CCA-ATT-TTGAAAATTGTGATTCTCGTCAATTTC----TCTTCacat
gi|26 : AT-GTTTTGTTGTATTAAAAA-AAGAACTCATAGCTCTAAGAGCT---TTACCTG--AAAGCGTGTTTGT--GCA---TGA---ACAA---TAGAACCCCCTATTTG-ACATA-ATCATTTCTTAATAGTT-AAACGTACTAACAATGTCTTTCTCCTTTCCATCATATAACCATTTA--TCATTAACACTTAATAC------CCCATCTTTACGGAACACTA
gi|27 : TTTAAC-AT-AATATTAA-CCGGCACATTCATACCCTTTGTCATAGGGGGTA-ATTTCCAAGTCGTC--CA-AAACA-GGGAAAATAATAAT-GG--GGAAGTTATCTCCTCTTGAAACTATCCAATATCGCAGCTAAAAAAC-TCT-GATAAGA--TGATGAATTGTTTTTCACACGAGTTAACATCTTTGTACAGATAGATCG
gi|28 : TTCTT---GCCAATGATT--------TATA---TGAATATCTCTTAATCTATTCCTTAACAAAGGTATGAACAAGTT----TACAAAAACTGATTCCGGATACATCCATATTTCTGCAAAGCC
gi|29 : ttctgtacaaagacaacgaagtgtggattaaaatagtTTTGTGAGAGTGTTATCTTGGTATTTAGAAATAATCAT---AC-AA-AATTATTTTAAGCATATA-T-CAATACAAATTTAAATTACAACA----CAATGTATGCTAC-ATT-AAA-CTG-TTAAACGAGAATCCCTGAGTTTGAAACCCTTAATACAATAAGCTGCAAGTTCATTTAAAATCGA--TT-TTTTTGGTCAactttggcacattcgaagaccagttttttgcattctggtttgtt
gi|3 : atATAA-----------------TGTGTTTGAA------TATATTGCTTACGCAGA-CATTGCTTGTAATAAGGACAATTAAA-ATAAAAATAATATTCGTCTTCTACATCGTTTTTGTCA------------TTTCT---ATATCTATG----TT--T-CTG-TGACGTCCGGTTTCTACGTACAATCTGTGAGATGATAATCTTATTTAAGCTATAACATTTTT-TGTTCAATATT-----AACAT------------GTAGTCTGACATTTGGTAA------GTATGTTTCATATTGCCGTGCA-----------AAA--TCA--------------ACGA---ACA-GTGGCTTAATCTATTTTCATGACTGGT--TTG-------TGTG---A--ATGTCTCTCAATATATTCCTTAATACAGGTATG-CATATTTTTACAATA---ACTGATTCCGG-AGTGTCGATATTTCTGCAAAACC-ACATTGGCATAGTAAATT---TCGCACTT--AAGCAGA-CCA-ATTGTTG--CATTCTAGTTTGTTTCAATTTC----ACATCT----CTATACATT-TTAACTGTGTTTGTAACGCAATTTATCTTTTTT-TTC---TTCATACA----AATAGAGT-----------CAATATTTC--AT-TATTCATATGTATGTACCTTGCAATTTACCCGTTTCTGAATAAAAAGATCA--TTAATCATGTGAAGACATATGTACATTAAGCGTCTATTTACAGAA
gi|30 : atatgatactgggtttgtggatTTTGTGAGAGTGTTATCTTGGTATTTAGAAACAATCAT---ACCAA-AATTGTTTTAAGCATAAACT-CAATACAAATTTAAATTACAATAAATACAATGTATTCTACTGTT-AAA-CTG-TTAAACGAGAATCTCTGAGTTTGAAACCCTTAATACAATAAGTTGTAAATTTGTTTttgtctatg
gi|31 : atGAGTGTTATCTTGGTATTTAGAAACAATAAT---AA-AATAAATATTTAAACCATAATCT-CATTACAAATTTAAATTACGATACA-A-AGTTT-TTCTGC-ATT-AAA-CTG-TTAAAAGAGCATCTCTGAGTTTGAAACCCTTAATACAATAAGTTGCAA
gi|32 : tttttttTTTGTGAGAGTATTATCTTGGTATTTAGAAACAATCAT---AC-AA-AATTATTTTAAGCATAAACT-CAATACAAATTTAAATTACAATAAATACAATGTATTCTAC-ATTAAAA-CTG-TTAAACGAGAATCCCTGAGTTTGAAACCCTTAATAC
gi|33 : tatTTTGTGAGAGTGTTATCTTGGTATTTAGAAACAATCAT---AC-AC-AATTATTTTAAGCATAAACT-CAATACAAATTTAAATTACAATAAATACAAGGTATTCTAC-ATT-AAA-CTG-TTAAACGAGAATCCCTGAGTTTGAAACCCTTAATAC
gi|34 : tatTTAAGCATAAAAT-CAATACAAATTTAAATTACAATA----CAATGTATTCTAT-ATT-AAA-CTG-TTAAACGAGAATCCCTGAGTTTGAAACCCTTAATACAATAAGTTGCAAGT
gi|35 : gcttagtaatttgacagtcttcatcaaaccatttggtagtgTTTGTGAGAGTGTTATCTTGGTATTTAGAAACAATCAT---AC-AA-CATTATTTTAAGCATAAACT-TAATACAAATTTAAATTACAATAAATACAGTGTATTCTAC-ATT-AAA-CTG-TTAAACGAGAATCCCTGAGTTTGAAACCCTTAATA
gi|36 : atTTTGTGAGAGTGTTATCTTGGTATTCAGAAA-AATCAT---ACAAA-AAATATTTTAAGCATTAACT-CAATACAAATTTTAATTACA--AAA-ACAATGTATTCTAT-ATT-AAA-CCA-TTAAACGAGAATCCTTGTGTTTGAAACTCCTAATA
gi|37 : atTTTGTGAGAGTGTTATATTGGTATTTAGAAACAATCATTAAAT-AA-AATT--TTAAAGCATAAACT-CAATACAAATTTACATTACAATA----CAATGTTTTCTAC-ATT-AAA-CTA-TTAAACAAGTATTCCTGAGTTTGAAACCCGTAAT
gi|39 : ttAGAGT-TTATCTTGGTATTTAGAAACAATCATA--AC-AT-AATTATTTAAAGCAT-TACTGCAATACAAATTTAAAT---AAAAAA-ACA---------GC-ATT-AAA-CTGTTTAAA-----------GAGT----AACCCTTGCTACAATAAGTTACAAG
gi|4 : GCTAGTTTATGTGATGATAATCGTATTTTAGCTATAGTGTTTCTATATTTTACATTTTCTAAACATAAATA---AGTAGAAG-CTCAAAT-------------GTCTGTTTTAAATGTCTGTATA--------TTTATA--T-A--------------AAGATGTACATGTGACC--ATACATTCCC---TCCAAT--TTGCAA----TGTA---T--ATATCTCTAAGCCTAGTCCGTAATAATGGTATGAAACAGTT----TATATTGACTGATTCGGGAAACATCCAAACGTCTGCATAACCTGCATT---AT-GTAAAATAGATCGAACTTTAAAG--GC-CCA-ATT-TTGAACATTGTGATTTTCATCAATTTC----CCTTCTTTGACTATGTATTATTGACCGTA---G-GATACAA-TTATCTTGCTT-ATT---CCCATGTAATTTAAT
gi|40 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaTTTCACCTCATCATAC--ATGGATCTGATTAATG-AGAATAATTTGCCATTTGT-CTCGGGTCTT--ATTAATTTAAACCATACACTATTTCGGCCAATTAAATCATTGGCTTTTTTGAAGTCCACGA---
gi|41 : CGT---GTGAGTCAAATAGGTTGAAC--ATGTTTATGTTTA-TAG-G--T-GTGTGCTAATAT-TTT--GTTGCGCTAAACA-ATGTACTTATTGTACGCAGGGCT---TTACCAG--ATA
gi|42 : TCATTTAAGTCACAACGTCAACATTTACTTTGATCTCT-TGC---TTGATGTTGATGTCGTCcagtacccgc
gi|43 : gaaatgacaattTTTTGAGAGTGT-ATCTTGGTATTTAGAAACAATCAT---AA-AATAATTATTTTAAGCATAA
gi|44 : attaCTATTTCGGCCAATTAAACCATTGGCTTTTTTGAAGTCCACGA---A
gi|45 : a----CG-AATCCCCATCTTTCACAACCATAATTTAAtaatt
gi|5 : GCTAGTTTATGTGATGATAATCGTACTTTAGCTATAGTGTTTCTATATTTTACATTTTCAAAACTTAAATATTAAGAAGAAGGTTCAAAT-------------GTCTGTTTTAAATGTCTGTATATATATATAT--ATA--T-A--------------AAGATGTACATGTGACT--ATACATTCCC---GCTAAT--TTGCAA----TGTA---T--ATATCTCTAAGCCTAGTCCATAATAATGTTATGAAACAGTT----AATATTGACCGATTCTGGAAACATCCAAACGTCTGCATATTCTGCATT---AT-GTAAAATCGACCGGACTTTAAAG--GC-CCA-ATT-TTGAAGGTTATGAGTTTCGTAAATTTC----TCTTCTTTGgccatatg
gi|6 : ataagtttgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaATTTCGGTCAATTAAATCATAGGCTTTTTTGAAGTCCACAA---AACAACAGAATAATTTATTTTTACCGC---CAAGTTGCT---T-TTCAG--T-CAGTGAATTAA-GGATGAATATAGCATCCACCGTACTCTAATTGGGTTTAAACCCGAACTGAGCGACAGTCAACATATCATTTTCGGCGGCCCATTTTTTTAATCGCTCATTGATTATAACAGTGAAAAACTTGGCA
gi|7 : ACATTTTCTAAACTTAATTA---AGATGACGGTTCAAAT-------------GCCTGTTTTAAATGTCTGTATA------------------A--------------AAGATGTACATTTGACT--ATATCTTTAC---GCCAAT--TTGCAAAATATATA---T--ATATATCTAAGCCTAGTTCGTGATGATGGTATGAAACAGTT----AATATCGACTGATTCTGGAAACATCCAAACGTTTGCATATCCTGCATT---AT-GTAAAATAGATCTGACTTTAAAT--GCTTTACATT-TTGAGAATTGTGAGTTTCGTCAATATT----TCTTCTTTGACTATGTATTATTGATCGTG---G-AATACAT-TTATCTTGCTT-AAC---CCCATGTAATTTAGTCAAGTATTTAACAATACAAT-TCTCAAATATCTTGCTATATA---TAGTGGATATCGACCTAACTCGGAATATAAAGATAA--AAATTT-TGT--AGATAATTTTACATTAAGaaacaacttgttatagttagactctatataattatttgggtccgttgttgtcctctttttaaataatggtataatgacaccagttgaccaactacgtggaaattttttttttatctaatatatgattgaacaatttagccagcggctgtgaaattacatcaaaactttccttaaagtattcgtataaaatattatcgaacaagcatgatttattggtattt
gi|8 : AATACTGGCCCAACAA---AAGCATCAAATAGATTAAAC--AA-TATATT-T-ACTGGCG--C-CT----TAACCT-TTCTTGTCATGGACAATAGAC-AGCTCATCGACTTAATTGCT---TTATCGGCCATAGC--ATTTG-TCGCT---TGT---GCAA---ATGA-CCCTCCACTCG-ACATT-TTTAATCCGAGATCATTGAAAC-AGCTTACAGTTTCAATCACCTGACCCGCGTATGTCCA-------CAATA-CATTTCGTGCAAGTTGTCCACTTTTCCTGAATATAACAAGTTTT-TTTTTTTTAATGTTAACGGTTAAATTCCAATCTTCGCAATAGTGTTCTAGTTTATTTAACGACGACTGGAGTCCCTCGGCACTTT-----CAGATAGCA-AA--AATGCATCGTCCGCGAAACAG-AGCAGGTAAATTTGTAGCT-----Gg
gi|9 : atacctcatttgagtaaaacTACATTTTCTAAACATAAATA---AGTAGAAGGCTCAAAT-------------GTCTGTTTTAAATGTCTGTATA--------T--ATACAT-A--------------AAGATGTACATGTGACC--ATACATTCCC---TCCAAT--TTGCAA----TGTA---T--ATATCTCTAAGCCTAGTCCGTAATAATGGTATGAAACAGTT----AATATTGACTGATTCGGGAAACATCCAAACGTCTGCATAACCTGCATT---AT-GTAAACTCGATCGAACTTTAAAG--GC-CCA-ATT-TTGAACATTGTGATTTTCATCAATTTC----CCTTCTTTGACTATGTATTATTGACCGTA---G-AATACAA-TTATCTTGCTT-ATT---CCCATGTAATTTAATGAAGTATTTA-----ACAAT-TCTCAGATATCTTCCTATATA---AAGTGG----------AACTCGGAATATAGAGATAA--AG
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): AAATGATATTCATCGTTGTAGTTGCAAAGTACCATTTTTTTTTTCATTTATATCTAGTATATTTCTGTCACGTCCGTTCTAAATGTACACACTTTTTTAAGCTATTACATTTTCATGATTTCATTGTTCAATTTTAACAAGTATTCTGCTATTTGGTAAGCATGTTTGATAGTGCTGTACAAAATAAGCGAGTAGTGGTTTAAATTTTTCTTCTCAATGGTCTATATGAATATTTCTCAATCTATTCCTTAACAATCCTATGGA
Unaligned ( gi|38 ): GTGGTCTGATATTTGGTAAGTATGTTTGTACAATACATTTCGCACTTTAGAAAACCAATTGTTTTGCATCCTGGTATGTTTCAATTTCTTGCATCTGTACATTTTTAATGGTATTTAAAACACAAGACTTTTTTCTTT
Unaligned ( gi|46 ): TAGTATTTGTCTCCAATACATAAACCAGAGACATAAACA
Alignments
lowQualScore : 1 222 44444444444444444 111111 1111 1 1 3333333333 3333333333333 444444444444444444444444444444444 22222 111 11 1 11 3333333333 11 1 77777777777777 111 3333333333333333333333 1111 111 222222222 11111 1 222222 11 888888888888888888888888 1 22222 1 333333333333333 11 111 11 1111 1 11 111 11 1 1 11 111 99999999999999999999999999999999999999999999
lowQualScore : 777 5 3 2 2 1 666 2 2 2 2 2 2 1 99 6 99 1 66666666666666666 999999 4444 0 5 1 0 9999999 7 3 4444444444 7 1 777 2 5555555555555 555555555555555555555555555555555 55 7777 44 7777 555 44 7777 1 1 666 3 0 55 3 3 3 4 7777 777 4 4 9999999 11 00000 8 0 3 444 66 5 3 1 11 0 33 1 0 1 1 0000000000 1 88 5 66666666666666 0 111 77 5 5 3333333333333333333333 0 5 4 4 3 888 1 33 22 888 77 0 0000 000 000000000 33333 6 1 6 6 0 3 8 1 1 1 1 555 7 99 3 333333 1 5 0 6 0 11 1 6 444444444444444444444444 66 4 0 0 666 0 1 2 55555 0 0 0 666666666666666 0 33 777 8 1 11 8 999 0000 8 3 5 1 1 8 3 1 00 8 0 111 99 1 4 1 11 1 3 0 4 88 55 0 33 0 0 9 1 1 111 1 1 99999999999999999999999999999999999999999999 0 7 1
lowQualScore : ... . . . . . ... . . . . . . . .. . .. . ................. ...... .... . . . . ....... . . .......... . . ... . ............. ................................. .. .... .. .... ... .. .... . . ... . . .. . . . . .... ... . . ....... .. ..... . . . ... .. . . . .. . .. . . . . .......... . .. . .............. . ... .. . . ...................... . . . . . ... . .. .. ... .. . .... ... ......... ..... . . . . . . . . . . . ... . .. . ...... . . . . . .. . . ........................ .. . . . ... . . . ..... . . . ............... . .. ... . . .. . ... .... . . . . . . . . .. . . ... .. . . . .. . . . . .. .. . .. . . . . . ... . . ............................................ . . .
lowQualScore : 333 3 3 1 7 9 111 8 7 7 7 7 7 0 22 7 22 4 77777777777777777 222222 2222 8 5 0 7 3333333 3 3 7777777777 3 0 000 4 0000000000000 111111111111111111111111111111111 00 6666 66 1111 888 66 7777 0 0 444 6 5 00 6 6 6 5 7777 888 4 4 2222222 88 00000 0 8 2 000 66 0 2 0 00 0 88 0 8 0 0 0000000000 0 55 5 22222222222222 7 777 99 7 0 6666666666666666666666 1 0 2 2 1 888 0 55 11 888 99 6 8888 555 333333333 77777 7 0 7 7 3 7 0 4 0 0 0 000 8 22 5 000000 0 0 2 7 7 00 0 5 555555555555555555555555 88 2 0 2 555 8 2 5 00000 2 0 2 555555555555555 8 88 555 8 0 00 0 000 4444 0 8 0 0 4 0 2 0 66 0 6 666 22 0 2 4 00 4 2 0 2 00 88 0 88 2 2 0 0 0 777 0 0 33333333333333333333333333333333333333333333 7 3 0
consensus : TTTGTGAGAGTGTTATCTTGGTATTTAGAAACAATCAT---AC-AA-AATTATTTTAAGCATAAACT-CAATACAAATTTAAATTACAATAAA-ACAATGTATTCTAC-ATT-AAA-CTG-TTAAACGAGAATCCCTGAGTTTGAAACCCTTAATACAATAAGTTGCAAGTTTGTTTAAAATCGA--TT-TTTT--GTCAATATTAAGAAGGTTAATAAATTTAAACATGCTTGGATGAGTTGAATAA-----------------TATTTAGGTA------TATATAATTTTCTCAGATCATTA----TAAAATGGGCAAATAAGTATGAAAATGGTATTCGTCTTCNACGTCGTTTAAGTCACAACGTCAACATTTTCTTTGATCTCT-TGC---TT--T-TTGATGTCGTCCNGTTTCTACGGCTAGTTTATGTGATGATAATCGTATTTTAGCTATAGTGTTTCTATATTTTACATTTTCTAAACATAAATA---AGNAGAAGGCTCAAAT-------------GTCTGTTTTAAATGTCTGTATA--------T--ATA--T-A--------------AAGATGTACATGTGACC--ATACATTCCC---GCCAAT--TTGCAA----TGTA---T--ATATCTCTAAGCCTAGTCCGTAATAATGGTATGAAACAGTT----AATATTGACTGATTCNGGAAACATCCAAACGTCTGCATANCCTGCATT---AT-GTAAAATCGATCGGACTTTAAAG--GC-CCA-ATT-TTGAANATTGTGATTTTCGTCAATTTC----CCTTCTTTGACTATGTATTATTGACCGTA---G-AATACAA-TTATCTTGCTT-ATT---CCCATGTAATTTAATGAAGTATTTA-----ACAAT-TCTCAGATATCTTCCTATATA---AAGTGGAAATCGACCTAACTCGGAATATAAAGATAA--AGAATT-TGT--AGACANTTTTACATTAAGNANCTATTTACAAAACATTTTTGTACTCTGTGAATACNCTCAATGTTGTCTAGT----CGAA-CCCCATACTTCACAACTATAATTTAATACTGATACAACGT---ATGCGTCAAATAGGTTAAAC--AT-TATATGGT-A-TAG-G--C-TT----CAATAT-TTTTTGTTACGCTAAACAACGGAC---TCATNGCCCGNAGNGCT---TTACCAG--ATAGCGTATTTGCTCGCA---TNN---ATAA---NNGA-CCCNCCACTTG-ACATA-ACTATTCCTAGATAATTGAAAC-TACTAACAATTTCNATCTCCTTNCCANCGTATGTCCATTTA--TCATTAGCACTTAATAC------CCCACCTTTNCGGAACACTACTATTTTTGTTTTATTAACGTTAACCGTTAAGTTTCATTTTTCACAATAGGAATATAAATTATTTAAAGATTNCTGGAGTCCCTC----TTTT-----C-GA---CA-AATTACGGCATCGTCCGC-AAACAGCAACAGATAAATTGGTAACT-----GTTCAAC-AGAA-TACCAA-CCG--ACATTAATATCCT--GTT---GGAGATGCATTTCAANATCATT--CA-AAAAA-GNGAAAATAA-AATCGG-AGAAGTGATCTCCCCTTGCAATAATCCAATGTCGCA-CTCGAANACATCT-GATAAAA--TGTTCAGNTGTTTTACACACGATTTGACCTCGTTATAC--ATAGATCGAATTAGTG-CGAATAGTTTGCCGTCNATACTTGA-TTTG--ATCAGTTTAAACCACAAGCTATTTCGGTCAATTAAATCATANGCTTTTTTGAAGTCCACGA---AGCAACAGTACAANTTNTTCTTATTAC---CAGGTTGCT-AAT-TTCAAAATGCTGTGTCG-AT-----ATAAATATTGCATCCACGGTACTATAATTAGGTTTAAAACCGAATTGAGAGTCCGTTAGAATGTCATTTTGTGAAGACCATTTTTTTAAACGCTCATTTAATATAACGGTAAAAAGCTTNGCA
Reference ( family-805 ) : TTTGTGAGAGTGTTATCTTGGTATTTAGAAACAATCAT---AC-AA-AATTATTTTAAGCATAAACT-CAATACAAATTTAAATTACAATAAA-ACAATGTATTCTAC-ATT-AAA-CTG-TTAAACGAGAATCCCTGAGTTTGAAACCCTTAATACAATAAGTTGCAAGTTTGTTTAAAATCGA--TT-TTTT--GTCAATATTAAGAAGGTTAATAAATTTAAACATGCTTGGATGAGTTGAATAA-----------------TATTTAGGTA------TATATAATTTTCTCAGATCATTA----TAAAATGGGCAAATAAGTATGAAAATGGTATTCGTCTTCNACGTCGTTTAAGTCACAACGTCAACATTTTCTTTGATCTCT-TGC---TT--T-TTGATGTCGTCCNGTTTCTACGGCTAGTTTATGTGATGATAATCGTATTTTAGCTATAGTGTTTCTATATTTTACATTTTCTAAACATAAATA---AGNAGAAGGCTCAAAT-------------GTCTGTTTTAAATGTCTGTATA--------T--ATA--T-A--------------AAGATGTACATGTGACC--ATACATTCCC---GCCAAT--TTGCAA----TGTA---T--ATATCTCTAAGCCTAGTCCGTAATAATGGTATGAAACAGTT----AATATTGACTGATTCNGGAAACATCCAAACGTCTGCATANCCTGCATT---AT-GTAAAATCGATCGGACTTTAAAG--GC-CCA-ATT-TTGAANATTGTGATTTTCGTCAATTTC----CCTTCTTTGACTATGTATTATTGACCGTA---G-AATACAA-TTATCTTGCTT-ATT---CCCATGTAATTTAATGAAGTATTTA-----ACAAT-TCTCAGATATCTTCCTATATA---AAGTGGAAATCGACCTAACTCGGAATATAAAGATAA--AGAATT-TGT--AGACANTTTTACATTAAGNANCTATTTACAAAACATTTTTGTACTCTGTGAATACNCTCAATGTTGTCTAGT----CGAA-CCCCATACTTCACAACTATAATTTAATACTGATACAACGT---ATGCGTCAAATAGGTTAAAC--AT-TATATGGT-A-TAG-G--C-TT----CAATAT-TTTTTGTTACGCTAAACAACGAAC---TCATNGCCCGNAGNGCT---TTACCAG--ATAGCGTATTTGCTCGCA---TNN---ATAA---NNGA-CCCNCCACTTG-ACATA-ACTATTCCTAGATAATTGAAAC-TACTAACAATTTCNATCTCCTTNCCANCGTATGTCCATTTA--TCATTAGCACTTAATAC------CCCACCTTTNCGGAACACTACTAGTTTTGTTTTATTAACGTTAACCGTTAAGTTTCATTTTTCACAATAGGAATATAAATTATTTAAAGATTNCTGGAGTCCCTC----TTTT-----C-GA---CA-AATTACGGCATCGTCCGC-AAACAGCAACAGATAAATTGGTAACT-----GTTCAAC-AGAA-TACCAA-CCG--ACATTAATATCCT--GTT---GGAGATGCATTTCAANATCATT--CA-AAAAA-GNGAAAATAA-AATCGG-AGAANTGATCTCCCCTTGCAATAATCCAATGTCGCA-CTCGAANACATCT-GATAAAA--TGTTCAGNTGTTTTACACACGATTTGACCTCGTTATAC--ATAGATCGAATTAGTG-CGAATAGTTTGCCGTCNATACTTGA-TTTG--ATCAGTTTAAACCACAAGCTATTTCGGTCAATTAAATCATANGCTTTTTTGAAGTCCACGA---AGCAACAGTACAANTTNTTCTTATTGC---CAGGTTGTT-AAT-TTCAAAATGCTGTGTCG-AT-----ATAAATATTGCATCCACGGTACTATAATTAGGTTTAAAACCGAATTGAGAGTCCGTTAGAATGTCATTTTGTGAAGACCATTTTTTTAAACGCTCATTTAATATAACGGTAAAAAGCTTNGCA
gi|1 : TTTGTGAGAGTGTTATCTTGGTATTTATAAACAATCAT---AC-AA-AATTATTTTAAGCATAAACT-CAATACAAATTTAAATTACAATAAATACAATGTATTCTAC-ATT-AAAACAG-TTAAACGAGAATCCCTGAGTTTGAAACCCTTAATACAATAAGTTGCAAGTTTGTTTAAAATCGA--TT-TGTT--GTCAATATTAAGAAGGTTAATAAATTTAAACATGCTTGGATGAGTTGAATAA-----------------TATTTAGGTA------TATATAATTTTCTCAGATCATTA----TAAAATGGGCAAATAAGTATGAAA-TGGTATTCGTCTTCGATGTCATTTAAGTCACAACATTAACATTTTCTTTGGTCTCT-TGCAATTT--T-TTGATGTCGTCCTGTTTCTATAGCTAGTTTATGTGATGATAATCGTATTTTAGCTATAGTGTTTCTATATTTTACATTTTCTAAACATAAATA---AGTAGAAAGCTCAAAT-------------GTCTGTTTTAAATGTCTGTATA--------T--ATA--T-A--------------AAGATGTACATGTGACC--ATACATTCCC---TCCAAT--TTGCAA----TGTA---T--ATATCTCTAAGCCTAGTCCGTAATAATGGTATGAAACAGTT----AATATTGACTGATTCGGGAAACATCCAAACGTCTGCATAACCTGCATT---AT-GTAAAATCGATCGAACTTTAAAG--GC-CCA-ATT-TTGAACATTGTGATTTTCATCAATTTC----CCTTCTTTGACTATGTATTATTGACCGTA---G-AATACAA-TTATCTTGCTT-ATT---CCCATGTAATTTAATAAAGTAATTA-----ACAAT-TCTGAGATATCTTCCTATATA---AAGTGGAAATCGACCTAACTCAGAATATAGAGATAA--AGAATT-TGT--AGATAATTTTACATTAAGGACCCATTTGCAAAAC----TT----TCTATGAATACGTTCAATGTTGTCTAGTTTTGCGAAACCCCATACTTCACAACTATAATTTAAAACTGATAAAACAT---ATGCATCAAACAGATTAAAC--AT-TATATGGT-A-TAG-AA-C-TT----CCATAT-TTTTTGTTATATCAAAAAGCGAAC---TCATAGCTCTAAATGCT---TTACCTG--AAAGCATATTTGTT-GCA---TGA---ATAA---TAGA-CCCCCCACTTG-ACATA-ACCATTCCTAAATAGTTAAAAG-TACTAACAATTTCTATCTCCTTTCCATCATATAACCATTTA--TCATCAGCACTTAATAC------CCCACCTTTACGGAACACTACTATTTTTGTTTTATTAACATTAACCGTTAAGTTTCTTTTTTTACAATAGGAATATAAATTATTTAAAGATTTCTGGAGTCCTTC----TCTTGTCTCC-GA---CATAATTACGGCATCGTCCGC-AAACAACAACAGATATATTGATAACT-----GTTCAAC-AGAAATACCAA-C------ATTAACATTCT--GTT---GGAGATGCATTTCGATATCATT--CAGAAAAA-GAGAAAAAAA-AATCGG-AGAAGTGGTCTCCCCTTGCAATAATCCAATGTTACA-CTCGAATACATCT-GATAGAC--TGTTCAGGTGTTTTACACACAATTTGACCTCGTTATAC--ATAGAACGAATTAGTG-CAAAAAGTTTGCCGTCAATACCTGA-TTTG--ATCAGTTTAAACCACAAGCAATTACGATTTAGTAAATCATATGCTTTTAAATAATCCACGA---AGCAACAGTACAATTTCTTCTTATTA--------------AAT-----AAATGCTAT-TCA-AT-----ATAAATATTGCATCCACGGTACTATAATTAGGTTTAAAACCAAATTGCGAGTCCGTTAGAATGTCATTTTGTGAAGACCA-TTTTTTAAACGCTCATTTAATATAACGGTAAAAAGCTTTGCA
gi|10 : ACATTTTCTAAACATTAACA---AGAAGAAGGTTCAAATGTCTGTTTTAAATGTCTGNNNNNNNNNNNNNNNNN--------N--NNN--N-NNNNNNNNNNNNNN-AAGATGAAGATGTGTCC--ATACATTCCC---GCCAAT--TTGCAA----TGTACTAT--ATATCTCTAAGCCTAGTCTGTAATAATGGTATGAAGCAGTT----AATATTGACTGTTTCTGGAAACATCCAAACGTCTGCATATCCTGCATT---AT-GTAAAATTAATCGGACTTTAAAG--GC-CCA-ATT-TTGAAAATTGTGATTTTCGTCAATTTCTCTTCCTTCTTCGACTATGTATTATTGACCATA---G-AATACAA-TTATCTTGCTT-AAT---CCCAGGTAATTTAATGAA
gi|11 : TTTAGCTAAAGTGTTTCTATATTTTATATTTTCTAAACATAAATA---AGTAGAAGGCTCAAAT-------------GTCTGTTTTAANNNNNNNNNNN--------N--NNN--N-NNNNNNNNNNNNNNNAAGATGTACATGTGACC--ATACATTCCC---TCCAAT--TTGCAA----TGTA---T--ATATCTTTAAGCCTAGTCCGTAATAATGGTATGAAACAGTT----AATATTCACTGATTCGGGAAACATCCAAACGTCTGCATAACCTGCATT---AT-GTAAAATCGATCGGACTTTAAAG--GC-CCA-ATT-TTGAACATTGTGATTTTCATCAATTTC----CCTTCTTTGACTATGTATTATTGACCGTA---G-AATGCAA-TAATCTTGCT
gi|12 : GTTTTTACATTTTACATTTTCTAAACTTAAATA---AGAAGAAGGTTCAAAT-------------GTCTGTTTTAAATGTCTGTATA--------T--ATA--T-A--------------AA-ATGTACATTTGACC--ATACATTCCC---GCCAAT--TTGCAA----TGTA---T--ATATCTCTAAGTCTAATTCGTAATAATGGTATGAAATGGTT----AATATTGACTGATTCTGGAAACATCCAAACGTCTGCATATCCTGCATT---AT-GTAAAATCGATCAGACTCTAAAG--GC-TCA-ATT-TTGAAAATTGTGAGTTTCATCAATTTC----TCTTCTTTGACTGTGTATTATTGACCGTA---G-AATACAA-TTATCTTGCTTAATTAACCCCATGTAATTTAATGga
gi|13 : ---AAGTGAAAATCTATTTAACTCTGCGTATAAAGATTATTGGTATT-TGT--CAACGTTTCAACATTGATTAATTATTTACAAAACATTTTTGTACTCTGTAAATACCCTC--TG-TGT---------------CCCACACCTCCCAACTATAGTGTAATATAGATACATTATCAGATTCATAAATTAAATTGAACAAAC-TGT-TGAT-G-CAT-A--CATT----CAAC-T-CTTTTGTCACATTAAACAACTGGC---TCACAGCCCGTAACACT---TTACCAG--CCAATGTATTTGCTTGCA---GCT---ATAATGTTAGA-ACCACCAAGTATAGATACATTATTCCCAAATAATTGAAA
gi|14 : ttTTAAAT--AT-TATATGGT-A-TGG-AA-C-TT----CCATAT-TTTTTGTTATATTAAAAAGTGAAC---TCTTCGCTCTAAGTGCTAGATTATCA
gi|15 : tatttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTGTGAGATTGTTTTCTTGATATTTATATACAATCAT---AA-AATAATTATTA-AAGCAGAAATT-CATTACAAAATTAAATTACAATA----TAATGTTTTCTAC-ATT-AAA-CTG-TTAAACGAGTATG---GAAATCTATACATGTAATGCCATAAGTTACACGTTTGTATAAAATTGA--TT-TTTT--GTCAATATTAAGAAAGTTTATACATTTAAACATACATGGACGAGTTGAATAATATTTAGGTATGTATAATATTTAGGTA------TGTATAATTTTCTCAGATCATTA----TAAAATGTGCAAATAAATAtctgggaaaaacat
gi|16 : TTTGTGAGAGAGTTATCTTGGTATTTAGAAACATTCAT---AA-AATAATTATTTGAAGTATAAACT-CAATACAAATTTACATTACAA---A-ACAGAGTTTTCTAC-ATT-AAA-CTG-TTAAACAGGTATCCCTCAGTTTAAAATCCTTAATACAATAAGTTGCAAGTTTGTTTAAAAAAAAAATT-TTTT--GTCAATATTAAGAAAGTTAATTAATTTAAACATGCTTGGATGAGTTGAATAA-----------------TATTTAGGTA------TATATAATTTTCTCAGATCATTA----T-AAATTTTCAAATAAGTATGAA
gi|17 : TTTGTGAGAGTGGTTTCTTGGTATTTAGAGACAATCAT---AA-AATACTTATTTAAAGCATAAACT-CAATACATATTTATATTACAA-----ACAATGTTTCCTGC-ATT-AAA-CCG-TTAATCTAGTATCTCGGAGTTTGAAACCCTTAATACAATAAGTTGCAAGTTTGTTTAAAATT-A--TT-TTTT--GTCACTATTAAGAATGTTAATAAATTTAAACATGCTTGGATGAGTTGAATAA-----------------TAGTTAGGTATATATGTATATACTTTTCTAAGATCATTA----TAAAATAGGAAAATAA
gi|18 : aTTTGTGAGAGTGTTATCTTGGTATTTAGAAACAATCAT---AC-AA-AATTATTTTAAGCATAAACT-CAATACAAATTTAAGTTACAATA----CAATGTATTTTAC-ATT-AAA-CTG-TTAAA------TCCCTGAATTTGAAACCCTTAATACAATAAGTTGCAAGTTTGTTTAAAATCGA--TTATTTT--GTCAATATTAAGAAGGTTAATAAATTTAAACATGCTTGGATGAGTTGAATAA-----------------TATAAAGGTA------TATATAATTTTCTCAGATCATTA----TAAAATGGGCAAATAAGTATGA
gi|2 : atTTCCA-CTCCTTGTAAATGCATA-ACATTTA--TCATCAGCACTTAATAT------CCCGCCTTTGCGGAACAATACTGTTTTTGTGTTATTTACATTAACCATTTAGTTTCATTTT--ACAATTGGAATATAAACTATTTAAAGATTCCTGGAGTCC---------------------------ATTACAGCAGCATCCGC-AAATAACAACAGAAAGATTGATAACT-----GTTCAAC-AGAA--AC--A-CCA--ACATTAATATCCT--GTT---GGATATGCATTTCAATATAATT--CC-GAAAA-GAGGAAATAA-AATCGG-AGAACGGATCTCCCCGTGCAATAATCCAATGTTACA-CTGGAATACATTT-GATAGAC--TGTTCA-TTGTTTTACACACAATTTGGCCTCGTTTTAC--ATAGAACGAATTAGTG-CGAATAGTTAACCATCAATACTTGA-TTTG--ATCAGTTTAAACCACAAGC----------AAGTAAATCATATGCTTTTATATTATCCACGA---AGCAACAGTACACGTTCTCCTTATTACATACAGGTTGTTCAATGTTCAAAATATTGAGTTGTAT-----ATAAATATTGCATCGTAGGTACTATAATTAGGTTTAAAACTAAATTGAGAGTCCGTTAGATTGTCATTTTGTGAAGACCATTTTTTTAAACGCTCATTTAATATAACGGTAAAAAGC
gi|20 : TTCAACATCATT--TA-CAAAATGTGAAAA-------CG-------T-ATCTACCCATGCAATAATCCTAAATTGCA-ATCAAAGAAATCTTGAGAAAA--TATTCAGATGTTTGACACA--GTCTAATTTCGTTATAA--ATGGATCGAA-TAATACCGAGTAATTTACCCTCT-TA-TTCA-TTTGTTATCAATTTGAATCAAAATCCATTTCTGTATATTGAATCAAACGCCCTTTTCAGATCTATAAGACGGCAATAATACAAATTAGTTTTGTTgtt
gi|21 : ACATAAATA---AAAAGAATGTTCAAAT-------------ATCGGTGTCAAATGTCTGTATA--------T--ATA--T-A--------------AAGATGTACATGTGACC--ATACATTCCC---TCCAAT--TTGCAA----TGTA---T--ACATTTCTAAGCCTAGTCCGTAATAATTATGTAAAAccttat
gi|21 : ATT---AT-GTAAAATCGATCGGACTTTAAAG--GC-CCA-ATT-TTGAA--TTGTGAATTTTGTCAATTTC----TCTTCTTTGACTATATATTACTGACCGTA---G-A----------------------------ATGTTATTTAATGAAGTATTTA-----ACAAT-TCTCAGATtcgatcggactttaaaggcccaattttgaattgtgaattttgtcaatttctcttctttgactatatattactgaccgtagaatgttatttaatgaagtatttaacaattctcagat
gi|22 : acataaataaaaagaatgttcaaatatcggtgtcaaatgtctgtatatatataaagatgtacatgtgaccatacattccctccaatttgcaatgtatacatttctaagcctagtccgtaataAACGT---ATGAGTCAAATAGGTTAAAC--AT-TATATTG--A-TAG-GTAT-TT----C-ATATGTTTTTGTTACGCTAAGCAAGGTAC---TCATTGCCCGCAAGGCT---TTACCAG--ATAGAG----TGCTCGCGTTTTTA---ATAA---ATGA-CCCTCCACTTG-ACAAA-ACTATACCTAGATAATTGAAAC-TGTTGACTATTTCAAT-TTCTGAC--TCGGATGTCCATTTA--TCATTTTTACTTAACAT------CCCACCCTTTC-GAACA
gi|23 : ACAT---ATGCGTCCAATAGGTTAAAC--AT-TAT-TG-T-A-AAT-G--TATT----TAATAC-TGTTT-TCACGCAAAACATTGGAC---TTGTTGACCGCAAGAAT---TTACCAG--ATAGAGT----GCCCACA---TTTTTCATAA---ATGA-TCCACCACTTG-ACACT-ACTATACCTAGATATATAAAAC-TATTAAATATTT-TATTTCTGTTGCGGCATAGGTCCATTTATTTCGTTG--ACTTAACAtgttttaaacat
gi|24 : TCACTC----TTTC-----T-GAA--TA-GATAACAGCATCATCTGC-AGAAAGC------TAAAATGGTAA-TAAAAAGTTGAGCTAAAA-T--CAGGCTG--GTATTATGATCAT--GTT---GAAGAAAGAGTTCAAAGACAGTAACG-AACAA--TGACAGTAC-AATCGGTAAGAGT-ATCTCTCCTTGTAAGGATCCAATTTCGCA-ATTGTAGA---------AAAAGTTATTTATATGTTTAACACACgc
gi|25 : agaATA--------T--ATA--T-A--------------AAGATGTACATGTGACC--ATACATTCCC---GCCAAT--TTGCAA----TGAC---T--ATATCTCTAAGCCTAGTCCGTAATAATGGTATGAAACAGTT----AATATTGACTGATTCGGGAAACATCCAAACGTCTGCATAACCTGCATT---AT-GTAAAATCGATCGGACTTTAAAG--GC-CCA-ATT-TTGAAAATTGTGATTCTCGTCAATTTC----TCTTCacat
gi|26 : AT-GTTTTGTTGTATTAAAAAAAGAAC---TCATAGCTCTAAGAGCT---TTACCTG--AAAGCGTGTTTGT--GCA---TGA---ACAA---TAGAACCCCCTATTTG-ACATA-ATCATTTCTTAATAGTT-AAACGTACTAACAATGTCTTTCTCCTTTCCATCATATAACCATTTA--TCATTAACACTTAATAC------CCCATCTTTACGGAACACTA
gi|27 : TTTAAC-ATAA-TATTAA-CCGGCACATTCATACCCTTTGTCATAGGGGGTA-ATTTCCAAGTCGTC--CA-AAACA-GGGAAAATAATAAT-GG-GGAAGTTATCTCCTCTTGAAACTATCCAATATCGCAGCTAAAAAAC-TCT-GATAAGA--TGATGAATTGTTTTTCACACGAGTTAACATCTTTGTACAGATAGATCG
gi|28 : TTCTT---GCCAATGATT--------TATA---TGAATATCTCTTAATCTATTCCTTAACAAAGGTATGAACAAGTT----TACAAAAACTGATTCCGGATACATCCATATTTCTGCAAAGCC
gi|29 : ttctgtacaaagacaacgaagtgtggattaaaatagtTTTGTGAGAGTGTTATCTTGGTATTTAGAAATAATCAT---AC-AA-AATTATTTTAAGCATATA-T-CAATACAAATTTAAATTACAACA----CAATGTATGCTAC-ATT-AAA-CTG-TTAAACGAGAATCCCTGAGTTTGAAACCCTTAATACAATAAGCTGCAAGTTCATTTAAAATCGA--TT-TTTTTGGTCAactttggcacattcgaagaccagttttttgcattctggtttgtt
gi|3 : atATAA-----------------TGTGTTTGAA------TATATTGCTTACGCAGA-CATTGCTTGTAATAAGGACAATTAAA-ATAAAAATAATATTCGTCTTCTACATCGTTTTTGTCA------------TTTCT---ATATCTATG----TT--T-CTG-TGACGTCCGGTTTCTACGTACAATCTGTGAGATGATAATCTTATTTAAGCTATAACATTTTT-TGTTCAATATT-----AACAT------------GTAGTCTGACATTTGGTAA------GTATGTTTCATATTGCCGTGCA-----------AAA--TCA--------------ACGA---ACA-GTGGCTTAATCTATTTTCATGACTGGT--TTG-------TGTG---A--ATGTCTCTCAATATATTCCTTAATACAGGTATG-CATATTTTTACAATA---ACTGATTCCGG-AGTGTCGATATTTCTGCAAAACC-ACATTGGCATAGTAAATT---TCGCACTT--AAGCAGA-CCA-ATTGTTG--CATTCTAGTTTGTTTCAATTTC----ACATCT----CTATACATT-TTAACTGTGTTTGTAACGCAATTTATCTTTTTT-TTC---TTCATACA----AATAGAGT-----------CAATATTTC--AT-TATTCATATGTATGTACCTTGCAATTTACCCGTTTCTGAATAAAAAGATCA--TTAATCATGTGAAGACATATGTACATTAAGCGTCTATTTACAGAA
gi|30 : atatgatactgggtttgtggatTTTGTGAGAGTGTTATCTTGGTATTTAGAAACAATCAT---ACCAA-AATTGTTTTAAGCATAAACT-CAATACAAATTTAAATTACAATAAATACAATGTATTCTACTGTT-AAA-CTG-TTAAACGAGAATCTCTGAGTTTGAAACCCTTAATACAATAAGTTGTAAATTTGTTTttgtctatg
gi|31 : atGAGTGTTATCTTGGTATTTAGAAACAATAAT---AA-AATAAATATTTAAACCATAATCT-CATTACAAATTTAAATTACGATACA-A-AGTTT-TTCTGC-ATT-AAA-CTG-TTAAAAGAGCATCTCTGAGTTTGAAACCCTTAATACAATAAGTTGCAA
gi|32 : tttttttTTTGTGAGAGTATTATCTTGGTATTTAGAAACAATCAT---AC-AA-AATTATTTTAAGCATAAACT-CAATACAAATTTAAATTACAATAAATACAATGTATTCTAC-ATTAAAA-CTG-TTAAACGAGAATCCCTGAGTTTGAAACCCTTAATAC
gi|33 : tatTTTGTGAGAGTGTTATCTTGGTATTTAGAAACAATCAT---AC-AC-AATTATTTTAAGCATAAACT-CAATACAAATTTAAATTACAATAAATACAAGGTATTCTAC-ATT-AAA-CTG-TTAAACGAGAATCCCTGAGTTTGAAACCCTTAATAC
gi|34 : tatTTAAGCATAAAAT-CAATACAAATTTAAATTACAATA----CAATGTATTCTAT-ATT-AAA-CTG-TTAAACGAGAATCCCTGAGTTTGAAACCCTTAATACAATAAGTTGCAAGT
gi|35 : gcttagtaatttgacagtcttcatcaaaccatttggtagtgTTTGTGAGAGTGTTATCTTGGTATTTAGAAACAATCAT---AC-AA-CATTATTTTAAGCATAAACT-TAATACAAATTTAAATTACAATAAATACAGTGTATTCTAC-ATT-AAA-CTG-TTAAACGAGAATCCCTGAGTTTGAAACCCTTAATA
gi|36 : atTTTGTGAGAGTGTTATCTTGGTATTCAGAAA-AATCAT---ACAAA-AAATATTTTAAGCATTAACT-CAATACAAATTTTAATTACA--AAA-ACAATGTATTCTAT-ATT-AAA-CCA-TTAAACGAGAATCCTTGTGTTTGAAACTCCTAATA
gi|37 : atTTTGTGAGAGTGTTATATTGGTATTTAGAAACAATCATTAAAT-AA-AATT--TTAAAGCATAAACT-CAATACAAATTTACATTACAATA----CAATGTTTTCTAC-ATT-AAA-CTA-TTAAACAAGTATTCCTGAGTTTGAAACCCGTAAT
gi|39 : ttAGAGT-TTATCTTGGTATTTAGAAACAATCATA--AC-AT-AATTATTTAAAGCAT-TACTGCAATACAAATTTAAAT---AAAAAA-ACA---------GC-ATT-AAA-CTGTTTAAA-----------GAGT----AACCCTTGCTACAATAAGTTACAAG
gi|4 : GCTAGTTTATGTGATGATAATCGTATTTTAGCTATAGTGTTTCTATATTTTACATTTTCTAAACATAAATA---AGTAGAAG-CTCAAAT-------------GTCTGTTTTAAATGTCTGTATA--------TTTATA--T-A--------------AAGATGTACATGTGACC--ATACATTCCC---TCCAAT--TTGCAA----TGTA---T--ATATCTCTAAGCCTAGTCCGTAATAATGGTATGAAACAGTT----TATATTGACTGATTCGGGAAACATCCAAACGTCTGCATAACCTGCATT---AT-GTAAAATAGATCGAACTTTAAAG--GC-CCA-ATT-TTGAACATTGTGATTTTCATCAATTTC----CCTTCTTTGACTATGTATTATTGACCGTA---G-GATACAA-TTATCTTGCTT-ATT---CCCATGTAATTTAAT
gi|40 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaTTTCACCTCATCATAC--ATGGATCTGATTAATG-AGAATAATTTGCCATTTGT-CTCGGGTCTT--ATTAATTTAAACCATACACTATTTCGGCCAATTAAATCATTGGCTTTTTTGAAGTCCACGA---
gi|41 : CGT---GTGAGTCAAATAGGTTGAAC--ATGTTTATGTTTA-TAG-G--T-GTGTGCTAATAT-TTT--GTTGCGCTAAACAATGTAC---TTATTGTACGCAGGGCT---TTACCAG--ATA
gi|42 : TCATTTAAGTCACAACGTCAACATTTACTTTGATCTCT-TGC---TTGATGTTGATGTCGTCcagtacccgc
gi|43 : gaaatgacaattTTTTGAGAGTGT-ATCTTGGTATTTAGAAACAATCAT---AA-AATAATTATTTTAAGCATAA
gi|44 : attaCTATTTCGGCCAATTAAACCATTGGCTTTTTTGAAGTCCACGA---A
gi|45 : a----CGAATCCCCATCTTTCACAACCATAATTTAAtaatt
gi|5 : GCTAGTTTATGTGATGATAATCGTACTTTAGCTATAGTGTTTCTATATTTTACATTTTCAAAACTTAAATATTAAGAAGAAGGTTCAAAT-------------GTCTGTTTTAAATGTCTGTATATATATATAT--ATA--T-A--------------AAGATGTACATGTGACT--ATACATTCCC---GCTAAT--TTGCAA----TGTA---T--ATATCTCTAAGCCTAGTCCATAATAATGTTATGAAACAGTT----AATATTGACCGATTCTGGAAACATCCAAACGTCTGCATATTCTGCATT---AT-GTAAAATCGACCGGACTTTAAAG--GC-CCA-ATT-TTGAAGGTTATGAGTTTCGTAAATTTC----TCTTCTTTGgccatatg
gi|6 : ataagtttgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaATTTCGGTCAATTAAATCATAGGCTTTTTTGAAGTCCACAA---AACAACAGAATAATTTATTTTTACCGC---CAAGTTGCT---T-TTCAG--T-CAGTG--A-ATTAAGGATGAATATAGCATCCACCGTACTCTAATTGGGTTTAAACCCGAACTGAGCGACAGTCAACATATCATTTTCGGCGGCCCATTTTTTTAATCGCTCATTGATTATAACAGTGAAAAACTTGGCA
gi|7 : ACATTTTCTAAACTTAATTA---AGATGACGGTTCAAAT-------------GCCTGTTTTAAATGTCTGTATA------------------A--------------AAGATGTACATTTGACT--ATATCTTTAC---GCCAAT--TTGCAAAATATATA---T--ATATATCTAAGCCTAGTTCGTGATGATGGTATGAAACAGTT----AATATCGACTGATTCTGGAAACATCCAAACGTTTGCATATCCTGCATT---AT-GTAAAATAGATCTGACTTTAAAT--GCTTTACATT-TTGAGAATTGTGAGTTTCGTCAATATT----TCTTCTTTGACTATGTATTATTGATCGTG---G-AATACAT-TTATCTTGCTT-AAC---CCCATGTAATTTAGTCAAGTATTTAACAATACAAT-TCTCAAATATCTTGCTATATA---TAGTGGATATCGACCTAACTCGGAATATAAAGATAA--AAATTT-TGT--AGATAATTTTACATTAAGaaacaacttgttatagttagactctatataattatttgggtccgttgttgtcctctttttaaataatggtataatgacaccagttgaccaactacgtggaaattttttttttatctaatatatgattgaacaatttagccagcggctgtgaaattacatcaaaactttccttaaagtattcgtataaaatattatcgaacaagcatgatttattggtattt
gi|8 : AATACTGGCCCAACAA---AAGCATCAAATAGATTAAAC--AA-TATATT-T-ACTGGCG--C-CT----TAACCT-TTCTTGTCATG---GACAATAGACAGCTCATCGACTTAATTGCT---TTATCGGCCATAGC--ATTTG-TCGCT---TGT---GCAA---ATGA-CCCTCCACTCG-ACATT-TTTAATCCGAGATCATTGAAAC-AGCTTACAGTTTCAATCACCTGACCCGCGTATGTCCA-------CAATA-CATTTCGTGCAAGTTGTCCACTTTTCCTGAATATAACAAGTTTTTTTTTTTTAATGTTAACGGTTAAATTCCAATCTTCGCAATAGTGTTCTAGTTTATTTAACGACGACTGGAGTCCCTCGGCACTTT-----CAGATAGCA-AA--AATGCATCGTCCGCGAAACAG-AGCAGGTAAATTTGTAGCT-----Gg
gi|9 : atacctcatttgagtaaaacTACATTTTCTAAACATAAATA---AGTAGAAGGCTCAAAT-------------GTCTGTTTTAAATGTCTGTATA--------T--ATACAT-A--------------AAGATGTACATGTGACC--ATACATTCCC---TCCAAT--TTGCAA----TGTA---T--ATATCTCTAAGCCTAGTCCGTAATAATGGTATGAAACAGTT----AATATTGACTGATTCGGGAAACATCCAAACGTCTGCATAACCTGCATT---AT-GTAAACTCGATCGAACTTTAAAG--GC-CCA-ATT-TTGAACATTGTGATTTTCATCAATTTC----CCTTCTTTGACTATGTATTATTGACCGTA---G-AATACAA-TTATCTTGCTT-ATT---CCCATGTAATTTAATGAAGTATTTA-----ACAAT-TCTCAGATATCTTCCTATATA---AAGTGG----------AACTCGGAATATAGAGATAA--AG
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): AAATGATATTCATCGTTGTAGTTGCAAAGTACCATTTTTTTTTTCATTTATATCTAGTATATTTCTGTCACGTCCGTTCTAAATGTACACACTTTTTTAAGCTATTACATTTTCATGATTTCATTGTTCAATTTTAACAAGTATTCTGCTATTTGGTAAGCATGTTTGATAGTGCTGTACAAAATAAGCGAGTAGTGGTTTAAATTTTTCTTCTCAATGGTCTATATGAATATTTCTCAATCTATTCCTTAACAATCCTATGGA
Unaligned ( gi|38 ): GTGGTCTGATATTTGGTAAGTATGTTTGTACAATACATTTCGCACTTTAGAAAACCAATTGTTTTGCATCCTGGTATGTTTCAATTTCTTGCATCTGTACATTTTTAATGGTATTTAAAACACAAGACTTTTTTCTTT
Unaligned ( gi|46 ): TAGTATTTGTCTCCAATACATAAACCAGAGACATAAACA
Alignments
lowQualScore : 1 222 44444444444444444 111111 1111 1 1 3333333333 3333333333333 444444444444444444444444444444444 22222 111 11 1 11 3333333333 11 1 77777777777777 111 3333333333333333333333 1111 111 222222222 11111 1 222222 11 888888888888888888888888 1 22222 1 333333333333333 11 111 11 1 11 111 11 1 1 11 111 9999999999999999999999999999999999999999999
lowQualScore : 777 5 3 2 2 1 666 2 2 2 2 2 2 1 99 6 99 1 66666666666666666 999999 4444 0 5 1 0 9999999 7 3 4444444444 7 1 777 2 5555555555555 555555555555555555555555555555555 55 7777 44 7777 555 44 7777 1 1 666 3 0 55 3 3 3 4 7777 777 4 4 9999999 11 00000 8 0 3 444 66 5 3 1 11 0 33 1 0 1 1 0000000000 1 88 5 66666666666666 0 111 77 5 5 3333333333333333333333 0 5 4 4 2 888 1 33 22 888 77 0 0000 000 000000000 33333 6 1 6 6 0 3 8 1 1 1 1 555 7 99 3 333333 1 5 0 0 11 1 6 444444444444444444444444 66 4 0 0 666 0 1 2 55555 0 0 0 666666666666666 0 33 777 8 1 11 8 999 999 5 8 5 1 1 8 3 1 00 8 0 111 99 1 4 1 11 1 3 0 4 88 55 0 33 0 0 9 1 1 111 1 1 8888888888888888888888888888888888888888888 0 7 1
lowQualScore : ... . . . . . ... . . . . . . . .. . .. . ................. ...... .... . . . . ....... . . .......... . . ... . ............. ................................. .. .... .. .... ... .. .... . . ... . . .. . . . . .... ... . . ....... .. ..... . . . ... .. . . . .. . .. . . . . .......... . .. . .............. . ... .. . . ...................... . . . . . ... . .. .. ... .. . .... ... ......... ..... . . . . . . . . . . . ... . .. . ...... . . . . .. . . ........................ .. . . . ... . . . ..... . . . ............... . .. ... . . .. . ... ... . . . . . . . . .. . . ... .. . . . .. . . . . .. .. . .. . . . . . ... . . ........................................... . . .
lowQualScore : 333 3 3 1 7 9 111 8 7 7 7 7 7 0 22 7 22 4 77777777777777777 222222 2222 8 5 0 7 3333333 3 3 7777777777 3 0 000 4 0000000000000 111111111111111111111111111111111 00 6666 66 1111 888 66 7777 0 0 444 6 5 00 6 6 6 5 7777 888 4 4 2222222 88 00000 0 8 2 000 66 0 2 0 00 0 88 0 8 0 0 0000000000 0 55 5 22222222222222 7 777 99 7 0 6666666666666666666666 1 0 2 2 2 888 0 55 11 888 99 6 8888 555 333333333 77777 7 0 7 7 3 7 0 4 0 0 0 000 8 22 5 000000 0 0 2 7 00 0 5 555555555555555555555555 88 2 0 2 555 8 2 5 00000 2 0 2 555555555555555 8 88 555 8 0 00 0 000 444 0 0 0 0 4 0 2 0 66 0 6 666 22 0 2 4 00 4 2 0 2 00 88 0 88 2 2 0 0 0 777 0 0 3333333333333333333333333333333333333333333 7 3 0
consensus : TTTGTGAGAGTGTTATCTTGGTATTTAGAAACAATCAT---AC-AA-AATTATTTTAAGCATAAACT-CAATACAAATTTAAATTACAATAAA-ACAATGTATTCTAC-ATT-AAA-CTG-TTAAACGAGAATCCCTGAGTTTGAAACCCTTAATACAATAAGTTGCAAGTTTGTTTAAAATCGA--TT-TTTT--GTCAATATTAAGAAGGTTAATAAATTTAAACATGCTTGGATGAGTTGAATAA-----------------TATTTAGGTA------TATATAATTTTCTCAGATCATTA----TAAAATGGGCAAATAAGTATGAAAATGGTATTCGTCTTCNACGTCGTTTAAGTCACAACGTCAACATTTTCTTTGATCTCT-TGC---TT--T-TTGATGTCGTCCNGTTTCTACGGCTAGTTTATGTGATGATAATCGTATTTTAGCTATAGTGTTTCTATATTTTACATTTTCTAAACATAAATA---AGNAGAAGGCTCAAAT-------------GTCTGTTTTAAATGTCTGTATA--------T--ATA--T-A--------------AAGATGTACATGTGACC--ATACATTCCC---GCCAAT--TTGCAA----TGTA---T--ATATCTCTAAGCCTAGTCCGTAATAATGGTATGAAACAGTT----AATATTGACTGATTCNGGAAACATCCAAACGTCTGCATANCCTGCATT---AT-GTAAAATCGATCGGACTTTAAAG--GC-CCA-ATT-TTGAANATTGTGATTTTCGTCAATTTC----CCTTCTTTGACTATGTATTATTGACCGTA---G-AATACAA-TTATCTTGCTT-ATT---CCCATGTAATTTAATGAAGTATTTA-----ACAAT-TCTCAGATATCTTCCTATATA---AAGTGGAAATCGACCTAACTCGGAATATAAAGATAA--AGAATT-TGT--AGACANTTTTACATTAAGNANCTATTTACAAAACATTTTTGTACTCTGTGAATACNCTCAATGTTGTCTAGT----CGAA-CCCCATACTTCACAACTATAATTTAATACTGATACAACGT---ATGCGTCAAATAGGTTAAAC--AT-TATATGGT-A-TAG-G--C-TT----CAATAT-TTTTTGTTACGCTAAACAACGGAC---TCATNGCCCGNAGNGCT---TTACCAG--ATAGCGTATTTGCTCGCA---TNN---ATAA---NNGA-CCCNCCACTTG-ACATA-ACTATTCCTAGATAATTGAAAC-TACTAACAATTTCNATCTCCTTNCCANCGTATGTCCATTTA--TCATTAGCACTTAATAC------CCCACCTTTNCGGAACACTACTATTTTTGTTTTATTAACGTTAACCGTTAAGTTTCATTTTTCACAATAGGAATATAAATTATTTAAAGATTNCTGGAGTCCCTC----TTTT-----C-GA---CA-AATTACGGCATCGTCCGC-AAACAGCAACAGATAAATTGGTAACT-----GTTCAAC-AGAA-TACCAA-CCG--ACATTAATATCCT--GTT---GGAGATGCATTTCAANATCATT--CA-AAAAA-GNGAAAATAA-AATCGG-AGAAGTGATCTCCCCTTGCAATAATCCAATGTCGCA-CTCGAANACATCT-GATAAAA--TGTTCAGNTGTTTTACACACGATTTGACCTCGTTATAC--ATAGATCGAATTAGTG-CGAATAGTTTGCCGTCNATACTTGA-TTTG--ATCAGTTTAAACCACAAGCTATTTCGGTCAATTAAATCATANGCTTTTTTGAAGTCCACGA---AGCAACAGTACAANTTNTTCTTATTAC---CAGGTTGCT-AAT-TTCAAAATGCTGTGTCG-AT-----ATAAATATTGCATCCACGGTACTATAATTAGGTTTAAAACCGAATTGAGAGTCCGTTAGAATGTCATTTTGTGAAGACCATTTTTTTAAACGCTCATTTAATATAACGGTAAAAAGCTTNGCA
Reference ( family-805 ) : TTTGTGAGAGTGTTATCTTGGTATTTAGAAACAATCAT---AC-AA-AATTATTTTAAGCATAAACT-CAATACAAATTTAAATTACAATAAA-ACAATGTATTCTAC-ATT-AAA-CTG-TTAAACGAGAATCCCTGAGTTTGAAACCCTTAATACAATAAGTTGCAAGTTTGTTTAAAATCGA--TT-TTTT--GTCAATATTAAGAAGGTTAATAAATTTAAACATGCTTGGATGAGTTGAATAA-----------------TATTTAGGTA------TATATAATTTTCTCAGATCATTA----TAAAATGGGCAAATAAGTATGAAAATGGTATTCGTCTTCNACGTCGTTTAAGTCACAACGTCAACATTTTCTTTGATCTCT-TGC---TT--T-TTGATGTCGTCCNGTTTCTACGGCTAGTTTATGTGATGATAATCGTATTTTAGCTATAGTGTTTCTATATTTTACATTTTCTAAACATAAATA---AGNAGAAGGCTCAAAT-------------GTCTGTTTTAAATGTCTGTATA--------T--ATA--T-A--------------AAGATGTACATGTGACC--ATACATTCCC---GCCAAT--TTGCAA----TGTA---T--ATATCTCTAAGCCTAGTCCGTAATAATGGTATGAAACAGTT----AATATTGACTGATTCNGGAAACATCCAAACGTCTGCATANCCTGCATT---AT-GTAAAATCGATCGGACTTTAAAG--GC-CCA-ATT-TTGAANATTGTGATTTTCGTCAATTTC----CCTTCTTTGACTATGTATTATTGACCGTA---G-AATACAA-TTATCTTGCTT-ATT---CCCATGTAATTTAATGAAGTATTTA-----ACAAT-TCTCAGATATCTTCCTATATA---AAGTGGAAATCGACCTAACTCGGAATATAAAGATAA--AGAATT-TGT--AGACANTTTTACATTAAGNANCTATTTACAAAACATTTTTGTACTCTGTGAATACNCTCAATGTTGTCTAGT----CGAA-CCCCATACTTCACAACTATAATTTAATACTGATACAACGT---ATGCGTCAAATAGGTTAAAC--AT-TATATGGT-A-TAG-G--C-TT----CAATAT-TTTTTGTTACGCTAAACAACGGAC---TCATNGCCCGNAGNGCT---TTACCAG--ATAGCGTATTTGCTCGCA---TNN---ATAA---NNGA-CCCNCCACTTG-ACATA-ACTATTCCTAGATAATTGAAAC-TACTAACAATTTCNATCTCCTTNCCANCGTATGTCCATTTA--TCATTAGCACTTAATAC------CCCACCTTTNCGGAACACTACTATTTTTGTTTTATTAACGTTAACCGTTAAGTTTCATTTTTCACAATAGGAATATAAATTATTTAAAGATTNCTGGAGTCCCTC----TTTT-----C-GA---CA-AATTACGGCATCGTCCGC-AAACAGCAACAGATAAATTGGTAACT-----GTTCAAC-AGAA-TACCAA-CCG--ACATTAATATCCT--GTT---GGAGATGCATTTCAANATCATT--CA-AAAAA-GNGAAAATAA-AATCGG-AGAAGTGATCTCCCCTTGCAATAATCCAATGTCGCA-CTCGAANACATCT-GATAAAA--TGTTCAGNTGTTTTACACACGATTTGACCTCGTTATAC--ATAGATCGAATTAGTG-CGAATAGTTTGCCGTCNATACTTGA-TTTG--ATCAGTTTAAACCACAAGCTATTTCGGTCAATTAAATCATANGCTTTTTTGAAGTCCACGA---AGCAACAGTACAANTTNTTCTTATTAC---CAGGTTGCT-AAT-TTCAAAATGCTGTGTCG-AT-----ATAAATATTGCATCCACGGTACTATAATTAGGTTTAAAACCGAATTGAGAGTCCGTTAGAATGTCATTTTGTGAAGACCATTTTTTTAAACGCTCATTTAATATAACGGTAAAAAGCTTNGCA
gi|1 : TTTGTGAGAGTGTTATCTTGGTATTTATAAACAATCAT---AC-AA-AATTATTTTAAGCATAAACT-CAATACAAATTTAAATTACAATAAATACAATGTATTCTAC-ATT-AAAACAG-TTAAACGAGAATCCCTGAGTTTGAAACCCTTAATACAATAAGTTGCAAGTTTGTTTAAAATCGA--TT-TGTT--GTCAATATTAAGAAGGTTAATAAATTTAAACATGCTTGGATGAGTTGAATAA-----------------TATTTAGGTA------TATATAATTTTCTCAGATCATTA----TAAAATGGGCAAATAAGTATGAAA-TGGTATTCGTCTTCGATGTCATTTAAGTCACAACATTAACATTTTCTTTGGTCTCT-TGCAATTT--T-TTGATGTCGTCCTGTTTCTATAGCTAGTTTATGTGATGATAATCGTATTTTAGCTATAGTGTTTCTATATTTTACATTTTCTAAACATAAATA---AGTAGAAAGCTCAAAT-------------GTCTGTTTTAAATGTCTGTATA--------T--ATA--T-A--------------AAGATGTACATGTGACC--ATACATTCCC---TCCAAT--TTGCAA----TGTA---T--ATATCTCTAAGCCTAGTCCGTAATAATGGTATGAAACAGTT----AATATTGACTGATTCGGGAAACATCCAAACGTCTGCATAACCTGCATT---AT-GTAAAATCGATCGAACTTTAAAG--GC-CCA-ATT-TTGAACATTGTGATTTTCATCAATTTC----CCTTCTTTGACTATGTATTATTGACCGTA---G-AATACAA-TTATCTTGCTT-ATT---CCCATGTAATTTAATAAAGTAATTA-----ACAAT-TCTGAGATATCTTCCTATATA---AAGTGGAAATCGACCTAACTCAGAATATAGAGATAA--AGAATT-TGT--AGATAATTTTACATTAAGGACCCATTTGCAAAAC----TT----TCTATGAATACGTTCAATGTTGTCTAGTTTTGCGAAACCCCATACTTCACAACTATAATTTAAAACTGATAAAACAT---ATGCATCAAACAGATTAAAC--AT-TATATGGT-A-TAG-AA-C-TT----CCATAT-TTTTTGTTATATCAAAAAGCGAAC---TCATAGCTCTAAATGCT---TTACCTG--AAAGCATATTTGTT-GCA---TGA---ATAA---TAGA-CCCCCCACTTG-ACATA-ACCATTCCTAAATAGTTAAAAG-TACTAACAATTTCTATCTCCTTTCCATCATATAACCATTTA--TCATCAGCACTTAATAC------CCCACCTTTACGGAACACTACTATTTTTGTTTTATTAACATTAACCGTTAAGTTTCTTTTTTTACAATAGGAATATAAATTATTTAAAGATTTCTGGAGTCCTTC----TCTTGTCTCC-GA---CATAATTACGGCATCGTCCGC-AAACAACAACAGATATATTGATAACT-----GTTCAAC-AGAAATACCAA-C------ATTAACATTCT--GTT---GGAGATGCATTTCGATATCATT--CAGAAAAA-GAGAAAAAAA-AATCGG-AGAAGTGGTCTCCCCTTGCAATAATCCAATGTTACA-CTCGAATACATCT-GATAGAC--TGTTCAGGTGTTTTACACACAATTTGACCTCGTTATAC--ATAGAACGAATTAGTG-CAAAAAGTTTGCCGTCAATACCTGA-TTTG--ATCAGTTTAAACCACAAGCAATTACGATTTAGTAAATCATATGCTTTTAAATAATCCACGA---AGCAACAGTACAATTTCTTCTTATTA--------------AAT-----AAATGCTAT-TCA-AT-----ATAAATATTGCATCCACGGTACTATAATTAGGTTTAAAACCAAATTGCGAGTCCGTTAGAATGTCATTTTGTGAAGACCA-TTTTTTAAACGCTCATTTAATATAACGGTAAAAAGCTTTGCA
gi|10 : ACATTTTCTAAACATTAACA---AGAAGAAGGTTCAAATGTCTGTTTTAAATGTCTGNNNNNNNNNNNNNNNNN--------N--NNN--N-NNNNNNNNNNNNNN-AAGATGAAGATGTGTCC--ATACATTCCC---GCCAAT--TTGCAA----TGTACTAT--ATATCTCTAAGCCTAGTCTGTAATAATGGTATGAAGCAGTT----AATATTGACTGTTTCTGGAAACATCCAAACGTCTGCATATCCTGCATT---AT-GTAAAATTAATCGGACTTTAAAG--GC-CCA-ATT-TTGAAAATTGTGATTTTCGTCAATTTCTCTTCCTTCTTCGACTATGTATTATTGACCATA---G-AATACAA-TTATCTTGCTT-AAT---CCCAGGTAATTTAATGAA
gi|11 : TTTAGCTAAAGTGTTTCTATATTTTATATTTTCTAAACATAAATA---AGTAGAAGGCTCAAAT-------------GTCTGTTTTAANNNNNNNNNNN--------N--NNN--N-NNNNNNNNNNNNNNNAAGATGTACATGTGACC--ATACATTCCC---TCCAAT--TTGCAA----TGTA---T--ATATCTTTAAGCCTAGTCCGTAATAATGGTATGAAACAGTT----AATATTCACTGATTCGGGAAACATCCAAACGTCTGCATAACCTGCATT---AT-GTAAAATCGATCGGACTTTAAAG--GC-CCA-ATT-TTGAACATTGTGATTTTCATCAATTTC----CCTTCTTTGACTATGTATTATTGACCGTA---G-AATGCAA-TAATCTTGCT
gi|12 : GTTTTTACATTTTACATTTTCTAAACTTAAATA---AGAAGAAGGTTCAAAT-------------GTCTGTTTTAAATGTCTGTATA--------T--ATA--T-A--------------AA-ATGTACATTTGACC--ATACATTCCC---GCCAAT--TTGCAA----TGTA---T--ATATCTCTAAGTCTAATTCGTAATAATGGTATGAAATGGTT----AATATTGACTGATTCTGGAAACATCCAAACGTCTGCATATCCTGCATT---AT-GTAAAATCGATCAGACTCTAAAG--GC-TCA-ATT-TTGAAAATTGTGAGTTTCATCAATTTC----TCTTCTTTGACTGTGTATTATTGACCGTA---G-AATACAA-TTATCTTGCTTAATTAACCCCATGTAATTTAATGga
gi|13 : ---AAGTGAAAATCTATTTAACTCTGCGTATAAAGATTATTGGTATT-TGT--CAACGTTTCAACATTGATTAATTATTTACAAAACATTTTTGTACTCTGTAAATACCCTC--TG-TGT---------------CCCACACCTCCCAACTATAGTGTAATATAGATACATTATCAGATTCATAAATTAAATTGAACAAAC-TGT-TGAT-G-CAT-A--CATT----CAAC-T-CTTTTGTCACATTAAACAACTGGC---TCACAGCCCGTAACACT---TTACCAG--CCAATGTATTTGCTTGCA---GCT---ATAATGTTAGA-ACCACCAAGTATAGATACATTATTCCCAAATAATTGAAA
gi|14 : ttTTAAAT--AT-TATATGGT-A-TGG-AA-C-TT----CCATAT-TTTTTGTTATATTAAAAAGTGAAC---TCTTCGCTCTAAGTGCTAGATTATCA
gi|15 : tatttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTGTGAGATTGTTTTCTTGATATTTATATACAATCAT---AA-AATAATTATTA-AAGCAGAAATT-CATTACAAAATTAAATTACAATA----TAATGTTTTCTAC-ATT-AAA-CTG-TTAAACGAGTATG---GAAATCTATACATGTAATGCCATAAGTTACACGTTTGTATAAAATTGA--TT-TTTT--GTCAATATTAAGAAAGTTTATACATTTAAACATACATGGACGAGTTGAATAATATTTAGGTATGTATAATATTTAGGTA------TGTATAATTTTCTCAGATCATTA----TAAAATGTGCAAATAAATAtctgggaaaaacat
gi|16 : TTTGTGAGAGAGTTATCTTGGTATTTAGAAACATTCAT---AA-AATAATTATTTGAAGTATAAACT-CAATACAAATTTACATTACAA---A-ACAGAGTTTTCTAC-ATT-AAA-CTG-TTAAACAGGTATCCCTCAGTTTAAAATCCTTAATACAATAAGTTGCAAGTTTGTTTAAAAAAAAAATT-TTTT--GTCAATATTAAGAAAGTTAATTAATTTAAACATGCTTGGATGAGTTGAATAA-----------------TATTTAGGTA------TATATAATTTTCTCAGATCATTA----T-AAATTTTCAAATAAGTATGAA
gi|17 : TTTGTGAGAGTGGTTTCTTGGTATTTAGAGACAATCAT---AA-AATACTTATTTAAAGCATAAACT-CAATACATATTTATATTACAA-----ACAATGTTTCCTGC-ATT-AAA-CCG-TTAATCTAGTATCTCGGAGTTTGAAACCCTTAATACAATAAGTTGCAAGTTTGTTTAAAATT-A--TT-TTTT--GTCACTATTAAGAATGTTAATAAATTTAAACATGCTTGGATGAGTTGAATAA-----------------TAGTTAGGTATATATGTATATACTTTTCTAAGATCATTA----TAAAATAGGAAAATAA
gi|18 : aTTTGTGAGAGTGTTATCTTGGTATTTAGAAACAATCAT---AC-AA-AATTATTTTAAGCATAAACT-CAATACAAATTTAAGTTACAATA----CAATGTATTTTAC-ATT-AAA-CTG-TTAAA------TCCCTGAATTTGAAACCCTTAATACAATAAGTTGCAAGTTTGTTTAAAATCGA--TTATTTT--GTCAATATTAAGAAGGTTAATAAATTTAAACATGCTTGGATGAGTTGAATAA-----------------TATAAAGGTA------TATATAATTTTCTCAGATCATTA----TAAAATGGGCAAATAAGTATGA
gi|2 : atTTCCA-CTCCTTGTAAATGCATA-ACATTTA--TCATCAGCACTTAATAT------CCCGCCTTTGCGGAACAATACTGTTTTTGTGTTATTTACATTAACCATTTAGTTTCATTTT--ACAATTGGAATATAAACTATTTAAAGATTCCTGGAGTCC---------------------------ATTACAGCAGCATCCGC-AAATAACAACAGAAAGATTGATAACT-----GTTCAAC-AGAA--AC--A-CCA--ACATTAATATCCT--GTT---GGATATGCATTTCAATATAATT--CC-GAAAA-GAGGAAATAA-AATCGG-AGAACGGATCTCCCCGTGCAATAATCCAATGTTACA-CTGGAATACATTT-GATAGAC--TGTTCA-TTGTTTTACACACAATTTGGCCTCGTTTTAC--ATAGAACGAATTAGTG-CGAATAGTTAACCATCAATACTTGA-TTTG--ATCAGTTTAAACCACAAGC----------AAGTAAATCATATGCTTTTATATTATCCACGA---AGCAACAGTACACGTTCTCCTTATTACATACAGGTTGTTCAATGTTCAAAATATTGAGTTGTAT-----ATAAATATTGCATCGTAGGTACTATAATTAGGTTTAAAACTAAATTGAGAGTCCGTTAGATTGTCATTTTGTGAAGACCATTTTTTTAAACGCTCATTTAATATAACGGTAAAAAGC
gi|20 : TTCAACATCATT--TA-CAAAATGTGAAAAC--------------GT-ATCTACCCATGCAATAATCCTAAATTGCA-ATCAAAGAAATCTTGAGAAAA--TATTCAGATGTTTGACACA--GTCTAATTTCGTTATAA--ATGGATCGAA-TAATACCGAGTAATTTACCCTCT-TA-TTCA-TTTGTTATCAATTTGAATCAAAATCCATTTCTGTATATTGAATCAAACGCCCTTTTCAGATCTATAAGACGGCAATAATACAAATTAGTTTTGTTgtt
gi|21 : ACATAAATA---AAAAGAATGTTCAAAT-------------ATCGGTGTCAAATGTCTGTATA--------T--ATA--T-A--------------AAGATGTACATGTGACC--ATACATTCCC---TCCAAT--TTGCAA----TGTA---T--ACATTTCTAAGCCTAGTCCGTAATAATTATGTAAAAccttat
gi|21 : ATT---AT-GTAAAATCGATCGGACTTTAAAG--GC-CCA-ATT-TTGAA--TTGTGAATTTTGTCAATTTC----TCTTCTTTGACTATATATTACTGACCGTA---G-A----------------------------ATGTTATTTAATGAAGTATTTA-----ACAAT-TCTCAGATtcgatcggactttaaaggcccaattttgaattgtgaattttgtcaatttctcttctttgactatatattactgaccgtagaatgttatttaatgaagtatttaacaattctcagat
gi|22 : acataaataaaaagaatgttcaaatatcggtgtcaaatgtctgtatatatataaagatgtacatgtgaccatacattccctccaatttgcaatgtatacatttctaagcctagtccgtaataAACGT---ATGAGTCAAATAGGTTAAAC--AT-TATATTG--A-TAG-GTAT-TT----C-ATATGTTTTTGTTACGCTAAGCAAGGTAC---TCATTGCCCGCAAGGCT---TTACCAG--ATAGAG----TGCTCGCGTTTTTA---ATAA---ATGA-CCCTCCACTTG-ACAAA-ACTATACCTAGATAATTGAAAC-TGTTGACTATTTCAAT-TTCTGAC--TCGGATGTCCATTTA--TCATTTTTACTTAACAT------CCCACCCTTTC-GAACA
gi|23 : ACAT---ATGCGTCCAATAGGTTAAAC--AT-TAT-TG-T-A-AAT-G--TATT----TAATAC-TGTTT-TCACGCAAAACATTGGAC---TTGTTGACCGCAAGAAT---TTACCAG--ATAGAGT----GCCCACA---TTTTTCATAA---ATGA-TCCACCACTTG-ACACT-ACTATACCTAGATATATAAAAC-TATTAAATATTT-TATTTCTGTTGCGGCATAGGTCCATTTATTTCGTTG--ACTTAACAtgttttaaacat
gi|24 : TCACTC----TTTC-----T-GAA--TA-GATAACAGCATCATCTGC-AGAAAGC------TAAAATGGTAA-TAAAAAGTTGAGCTAAAA-T--CAGGCTG--GTATTATGATCAT--GTT---GAAGAAAGAGTTCAAAGACAGTAACG-AACAA--TGACAGTAC-AATCGGTAAGAGT-ATCTCTCCTTGTAAGGATCCAATTTCGCA-ATTGTAGA---------AAAAGTTATTTATATGTTTAACACACgc
gi|25 : agaATA--------T--ATA--T-A--------------AAGATGTACATGTGACC--ATACATTCCC---GCCAAT--TTGCAA----TGAC---T--ATATCTCTAAGCCTAGTCCGTAATAATGGTATGAAACAGTT----AATATTGACTGATTCGGGAAACATCCAAACGTCTGCATAACCTGCATT---AT-GTAAAATCGATCGGACTTTAAAG--GC-CCA-ATT-TTGAAAATTGTGATTCTCGTCAATTTC----TCTTCacat
gi|26 : AT-GTTTTGTTGTATTAAAAAAAGAAC---TCATAGCTCTAAGAGCT---TTACCTG--AAAGCGTGTTTGT--GCA---TGA---ACAA---TAGAACCCCCTATTTG-ACATA-ATCATTTCTTAATAGTT-AAACGTACTAACAATGTCTTTCTCCTTTCCATCATATAACCATTTA--TCATTAACACTTAATAC------CCCATCTTTACGGAACACTA
gi|27 : TTTAAC-ATAA-TATTAA-CCGGCACATTCATACCCTTTGTCATAGGGGGTA-ATTTCCAAGTCGTC--CA-AAACA-GGGAAAATAATAAT-GG-GGAAGTTATCTCCTCTTGAAACTATCCAATATCGCAGCTAAAAAAC-TCT-GATAAGA--TGATGAATTGTTTTTCACACGAGTTAACATCTTTGTACAGATAGATCG
gi|28 : TTCTT---GCCAATGATT--------TATA---TGAATATCTCTTAATCTATTCCTTAACAAAGGTATGAACAAGTT----TACAAAAACTGATTCCGGATACATCCATATTTCTGCAAAGCC
gi|29 : ttctgtacaaagacaacgaagtgtggattaaaatagtTTTGTGAGAGTGTTATCTTGGTATTTAGAAATAATCAT---AC-AA-AATTATTTTAAGCATATA-T-CAATACAAATTTAAATTACAACA----CAATGTATGCTAC-ATT-AAA-CTG-TTAAACGAGAATCCCTGAGTTTGAAACCCTTAATACAATAAGCTGCAAGTTCATTTAAAATCGA--TT-TTTTTGGTCAactttggcacattcgaagaccagttttttgcattctggtttgtt
gi|3 : atATAA-----------------TGTGTTTGAA------TATATTGCTTACGCAGA-CATTGCTTGTAATAAGGACAATTAAA-ATAAAAATAATATTCGTCTTCTACATCGTTTTTGTCA------------TTTCT---ATATCTATG----TT--T-CTG-TGACGTCCGGTTTCTACGTACAATCTGTGAGATGATAATCTTATTTAAGCTATAACATTTTT-TGTTCAATATT-----AACAT------------GTAGTCTGACATTTGGTAA------GTATGTTTCATATTGCCGTGCA-----------AAA--TCA--------------ACGA---ACA-GTGGCTTAATCTATTTTCATGACTGGT--TTG-------TGTG---A--ATGTCTCTCAATATATTCCTTAATACAGGTATG-CATATTTTTACAATA---ACTGATTCCGG-AGTGTCGATATTTCTGCAAAACC-ACATTGGCATAGTAAATT---TCGCACTT--AAGCAGA-CCA-ATTGTTG--CATTCTAGTTTGTTTCAATTTC----ACATCT----CTATACATT-TTAACTGTGTTTGTAACGCAATTTATCTTTTTT-TTC---TTCATACA----AATAGAGT-----------CAATATTTC--AT-TATTCATATGTATGTACCTTGCAATTTACCCGTTTCTGAATAAAAAGATCA--TTAATCATGTGAAGACATATGTACATTAAGCGTCTATTTACAGAA
gi|30 : atatgatactgggtttgtggatTTTGTGAGAGTGTTATCTTGGTATTTAGAAACAATCAT---ACCAA-AATTGTTTTAAGCATAAACT-CAATACAAATTTAAATTACAATAAATACAATGTATTCTACTGTT-AAA-CTG-TTAAACGAGAATCTCTGAGTTTGAAACCCTTAATACAATAAGTTGTAAATTTGTTTttgtctatg
gi|31 : atGAGTGTTATCTTGGTATTTAGAAACAATAAT---AA-AATAAATATTTAAACCATAATCT-CATTACAAATTTAAATTACGATACA-A-AGTTT-TTCTGC-ATT-AAA-CTG-TTAAAAGAGCATCTCTGAGTTTGAAACCCTTAATACAATAAGTTGCAA
gi|32 : tttttttTTTGTGAGAGTATTATCTTGGTATTTAGAAACAATCAT---AC-AA-AATTATTTTAAGCATAAACT-CAATACAAATTTAAATTACAATAAATACAATGTATTCTAC-ATTAAAA-CTG-TTAAACGAGAATCCCTGAGTTTGAAACCCTTAATAC
gi|33 : tatTTTGTGAGAGTGTTATCTTGGTATTTAGAAACAATCAT---AC-AC-AATTATTTTAAGCATAAACT-CAATACAAATTTAAATTACAATAAATACAAGGTATTCTAC-ATT-AAA-CTG-TTAAACGAGAATCCCTGAGTTTGAAACCCTTAATAC
gi|34 : tatTTAAGCATAAAAT-CAATACAAATTTAAATTACAATA----CAATGTATTCTAT-ATT-AAA-CTG-TTAAACGAGAATCCCTGAGTTTGAAACCCTTAATACAATAAGTTGCAAGT
gi|35 : gcttagtaatttgacagtcttcatcaaaccatttggtagtgTTTGTGAGAGTGTTATCTTGGTATTTAGAAACAATCAT---AC-AA-CATTATTTTAAGCATAAACT-TAATACAAATTTAAATTACAATAAATACAGTGTATTCTAC-ATT-AAA-CTG-TTAAACGAGAATCCCTGAGTTTGAAACCCTTAATA
gi|36 : atTTTGTGAGAGTGTTATCTTGGTATTCAGAAA-AATCAT---ACAAA-AAATATTTTAAGCATTAACT-CAATACAAATTTTAATTACA--AAA-ACAATGTATTCTAT-ATT-AAA-CCA-TTAAACGAGAATCCTTGTGTTTGAAACTCCTAATA
gi|37 : atTTTGTGAGAGTGTTATATTGGTATTTAGAAACAATCATTAAAT-AA-AATT--TTAAAGCATAAACT-CAATACAAATTTACATTACAATA----CAATGTTTTCTAC-ATT-AAA-CTA-TTAAACAAGTATTCCTGAGTTTGAAACCCGTAAT
gi|39 : ttAGAGT-TTATCTTGGTATTTAGAAACAATCATA--AC-AT-AATTATTTAAAGCAT-TACTGCAATACAAATTTAAAT---AAAAAA-ACA---------GC-ATT-AAA-CTGTTTAAA-----------GAGT----AACCCTTGCTACAATAAGTTACAAG
gi|4 : GCTAGTTTATGTGATGATAATCGTATTTTAGCTATAGTGTTTCTATATTTTACATTTTCTAAACATAAATA---AGTAGAAG-CTCAAAT-------------GTCTGTTTTAAATGTCTGTATA--------TTTATA--T-A--------------AAGATGTACATGTGACC--ATACATTCCC---TCCAAT--TTGCAA----TGTA---T--ATATCTCTAAGCCTAGTCCGTAATAATGGTATGAAACAGTT----TATATTGACTGATTCGGGAAACATCCAAACGTCTGCATAACCTGCATT---AT-GTAAAATAGATCGAACTTTAAAG--GC-CCA-ATT-TTGAACATTGTGATTTTCATCAATTTC----CCTTCTTTGACTATGTATTATTGACCGTA---G-GATACAA-TTATCTTGCTT-ATT---CCCATGTAATTTAAT
gi|40 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaTTTCACCTCATCATAC--ATGGATCTGATTAATG-AGAATAATTTGCCATTTGT-CTCGGGTCTT--ATTAATTTAAACCATACACTATTTCGGCCAATTAAATCATTGGCTTTTTTGAAGTCCACGA---
gi|41 : CGT---GTGAGTCAAATAGGTTGAAC--ATGTTTATGTTTA-TAG-G--T-GTGTGCTAATAT-TTT--GTTGCGCTAAACAATGTAC---TTATTGTACGCAGGGCT---TTACCAG--ATA
gi|42 : TCATTTAAGTCACAACGTCAACATTTACTTTGATCTCT-TGC---TTGATGTTGATGTCGTCcagtacccgc
gi|43 : gaaatgacaattTTTTGAGAGTGT-ATCTTGGTATTTAGAAACAATCAT---AA-AATAATTATTTTAAGCATAA
gi|44 : attaCTATTTCGGCCAATTAAACCATTGGCTTTTTTGAAGTCCACGA---A
gi|45 : a----CGAATCCCCATCTTTCACAACCATAATTTAAtaatt
gi|5 : GCTAGTTTATGTGATGATAATCGTACTTTAGCTATAGTGTTTCTATATTTTACATTTTCAAAACTTAAATATTAAGAAGAAGGTTCAAAT-------------GTCTGTTTTAAATGTCTGTATATATATATAT--ATA--T-A--------------AAGATGTACATGTGACT--ATACATTCCC---GCTAAT--TTGCAA----TGTA---T--ATATCTCTAAGCCTAGTCCATAATAATGTTATGAAACAGTT----AATATTGACCGATTCTGGAAACATCCAAACGTCTGCATATTCTGCATT---AT-GTAAAATCGACCGGACTTTAAAG--GC-CCA-ATT-TTGAAGGTTATGAGTTTCGTAAATTTC----TCTTCTTTGgccatatg
gi|6 : ataagtttgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaATTTCGGTCAATTAAATCATAGGCTTTTTTGAAGTCCACAA---AACAACAGAATAATTTATTTTTACCGC---CAAGTTGCT---T-TTCAG--T-CAGTG--A-ATTAAGGATGAATATAGCATCCACCGTACTCTAATTGGGTTTAAACCCGAACTGAGCGACAGTCAACATATCATTTTCGGCGGCCCATTTTTTTAATCGCTCATTGATTATAACAGTGAAAAACTTGGCA
gi|7 : ACATTTTCTAAACTTAATTA---AGATGACGGTTCAAAT-------------GCCTGTTTTAAATGTCTGTATA------------------A--------------AAGATGTACATTTGACT--ATATCTTTAC---GCCAAT--TTGCAAAATATATA---T--ATATATCTAAGCCTAGTTCGTGATGATGGTATGAAACAGTT----AATATCGACTGATTCTGGAAACATCCAAACGTTTGCATATCCTGCATT---AT-GTAAAATAGATCTGACTTTAAAT--GCTTTACATT-TTGAGAATTGTGAGTTTCGTCAATATT----TCTTCTTTGACTATGTATTATTGATCGTG---G-AATACAT-TTATCTTGCTT-AAC---CCCATGTAATTTAGTCAAGTATTTAACAATACAAT-TCTCAAATATCTTGCTATATA---TAGTGGATATCGACCTAACTCGGAATATAAAGATAA--AAATTT-TGT--AGATAATTTTACATTAAGaaacaacttgttatagttagactctatataattatttgggtccgttgttgtcctctttttaaataatggtataatgacaccagttgaccaactacgtggaaattttttttttatctaatatatgattgaacaatttagccagcggctgtgaaattacatcaaaactttccttaaagtattcgtataaaatattatcgaacaagcatgatttattggtattt
gi|8 : AATACTGGCCCAACAA---AAGCATCAAATAGATTAAAC--AA-TATATT-T-ACTGGCG--C-CT----TAACCT-TTCTTGTCATG---GACAATAGACAGCTCATCGACTTAATTGCT---TTATCGGCCATAGC--ATTTG-TCGCT---TGT---GCAA---ATGA-CCCTCCACTCG-ACATT-TTTAATCCGAGATCATTGAAAC-AGCTTACAGTTTCAATCACCTGACCCGCGTATGTCCA-------CAATA-CATTTCGTGCAAGTTGTCCACTTTTCCTGAATATAACAAGTTTTTTTTTTTTAATGTTAACGGTTAAATTCCAATCTTCGCAATAGTGTTCTAGTTTATTTAACGACGACTGGAGTCCCTCGGCACTTT-----CAGATAGCA-AA--AATGCATCGTCCGCGAAACAG-AGCAGGTAAATTTGTAGCT-----Gg
gi|9 : atacctcatttgagtaaaacTACATTTTCTAAACATAAATA---AGTAGAAGGCTCAAAT-------------GTCTGTTTTAAATGTCTGTATA--------T--ATACAT-A--------------AAGATGTACATGTGACC--ATACATTCCC---TCCAAT--TTGCAA----TGTA---T--ATATCTCTAAGCCTAGTCCGTAATAATGGTATGAAACAGTT----AATATTGACTGATTCGGGAAACATCCAAACGTCTGCATAACCTGCATT---AT-GTAAACTCGATCGAACTTTAAAG--GC-CCA-ATT-TTGAACATTGTGATTTTCATCAATTTC----CCTTCTTTGACTATGTATTATTGACCGTA---G-AATACAA-TTATCTTGCTT-ATT---CCCATGTAATTTAATGAAGTATTTA-----ACAAT-TCTCAGATATCTTCCTATATA---AAGTGG----------AACTCGGAATATAGAGATAA--AG
blockSeqs : TAA C T G G T AAT T T A . T T G AA A TG A TATTTAGGTATGTATAA TATATG CTTG A T CAACGTC T A CTTGATG A G TTA A GTCTGTTTTAAAT NNNNNNNNNNNNNNNNNNNN TA ATGA GA AATA CTA GA TTAC T T GGC A CA T C G A TCTT TTT T T AATTAAC AT ACAAT A A TGT AA T T T TT A GA T T A ATTTTTGTAC C . . . CAG AA G A TTTATAGGTGTGTGCTA G T C G AGC A GT AC AGA CC TGTA CTT TTTTTA TGTTA A A T C G G T C C G AAA T TT G AAGTTG G G TC C C GGCACTTTCAGATAGCAA TT A G CAA G C AAAAA T TATTAACCGGCAC TT ATA C T AA . TGT AAT C T G G G G G T CA T AGT GA T A G AG A T C A AA AC G TT C A T GAC G C CATACAGGTTGTTCAATGTTCAAAATATTGAGTTGTAT T G
blockSeqs : A A T A . T AAT T . . . . T A . . . A . . . . . . TTT . . T TTGGTAA NNNNNNNNNNNNNNNNNNN . G . . . . . G A . . . . . . C . . . . AAT AT . . A . CA T T C . . . T C T . . . A ATGCATACATTCA . T T A . C TA GT . . CGTG CTC TTTTTC AT . T . . G . T A T A CGG T . T . T G . A C TTTCTGAATAG TA A . AG A C . . TCAGGCTGGT . . G C . . GA AA C . T A A . C G AA . C TA G G A . T T . C TG A . . T C C . A A CCAAGTTGCTTTTCAGTCAGTGAATTAAGG T
blockSeqs : . . T T . C AAT T . . . . T G . . . T . . . . A . TATATATATATATA . T . . . . . T T . . . . . . A . . . . TTC AT . . . . AT G G A . . . A . . . A GTATGGAACTTCC . C G T . T GC AG . . AGT CCC GCT AT . A . . A . A T C T CAT A . A . A T . . . T . C A . . . ACACCAAC . . . A . . GG AC . . . T T . T G C . A AT A . A . T . . A T C . . T C G . T A
blockSeqs : . . T T . T AAT A . . . . A G . . . G . . . . A . TTTATATA . G . . . . . G A . . . . . . A . . . . ATT . . . . . . G A . . . . A TACTGGCGCCTTA . C T G . T GC AG . . AG TC TGA TA . C . . G . A T C T CCG T . . . C . A . . T . . . . T A . A A . . A T T C . T . C G .
blockSeqs : . . T T . T CA A . . . . A . . . . . . . . T . TATACATA . T . . . . . C G . . . . . . C . . . . AAC . . . . GATAGGTATTTC . T A A . A TA GA . . CA T TGT AT . T . . . A . A T . . . . G .
blockSeqs : . . . A . T AA A . . . . C . A . TATATA . G . . . . . C A . . . . . . C . . . . ATT . . . TAAATGTATTTA . C T T . T GC GG . .
blockSeqs : . . . T . T AA A . . . . A . A . TATATA . G . . . . . G A . . . . . . G . . . . . . . T G . C TA TT .
blockSeqs : . . . T . T A A . . . . A . T . TATATA . T . . . . . T T . . . . . . A . . . .
blockSeqs : . . . T . T . A . . . . A . . . AAATCA . G . . . . . T T . . . . . . C .
blockSeqs : . . . T . T . A . . . . A A . G . . . . . G A . . . . . . . .
blockSeqs : . . . T . A . A . . . . A T . . . .
blockSeqs : . . . A . . . T . . . . T
blockSeqs : . . . A . . . . . . . . .
blockSeqs : . . . T . . . . . . . . .
blockSeqs : .
blockSeqCons : AA* CTC
originalCons : TTTGTGAGAGTGTTATCTTGGTATTTAGAAACAATCAT---AC-AA-AATTATTTTAAGCATAAACT-CAATACAAATTTAAATTACAATAAA-ACAATGTATTCTAC-ATT-AAA-CTG-TTAAACGAGAATCCCTGAGTTTGAAACCCTTAATACAATAAGTTGCAAGTTTGTTTAAAATCGA--TT-TTTT--GTCAATATTAAGAAGGTTAATAAATTTAAACATGCTTGGATGAGTTGAATAA-----------------TATTTAGGTA------TATATAATTTTCTCAGATCATTA----TAAAATGGGCAAATAAGTATGAAAATGGTATTCGTCTTCNACGTCGTTTAAGTCACAACGTCAACATTTTCTTTGATCTCT-TGC---TT--T-TTGATGTCGTCCNGTTTCTACGGCTAGTTTATGTGATGATAATCGTATTTTAGCTATAGTGTTTCTATATTTTACATTTTCTAAACATAAATA---AGNAGAAGGCTCAAAT-------------GTCTGTTTTAAATGTCTGTATA--------T--ATA--T-A--------------AAGATGTACATGTGACC--ATACATTCCC---GCCAAT--TTGCAA----TGTA---T--ATATCTCTAAGCCTAGTCCGTAATAATGGTATGAAACAGTT----AATATTGACTGATTCNGGAAACATCCAAACGTCTGCATANCCTGCATT---AT-GTAAAATCGATCGGACTTTAAAG--GC-CCA-ATT-TTGAANATTGTGATTTTCGTCAATTTC----CCTTCTTTGACTATGTATTATTGACCGTA---G-AATACAA-TTATCTTGCTT-ATT---CCCATGTAATTTAATGAAGTATTTA-----ACAAT-TCTCAGATATCTTCCTATATA---AAGTGGAAATCGACCTAACTCGGAATATAAAGATAA--AGAATT-TGT--AGACANTTTTACATTAAGNANCTATTTACAAAACATTTTTGTACTCTGTGAATACNCTCAATGTTGTCTAGT----CGAA-CCCCATACTTCACAACTATAATTTAATACTGATACAACGT---ATGCGTCAAATAGGTTAAAC--AT-TATATGGT-A-TAG-G--C-TT----CAATAT-TTTTTGTTACGCTAAACAACGGAC---TCATNGCCCGNAGNGCT---TTACCAG--ATAGCGTATTTGCTCGCA---TNN---ATAA---NNGA-CCCNCCACTTG-ACATA-ACTATTCCTAGATAATTGAAAC-TACTAACAATTTCNATCTCCTTNCCANCGTATGTCCATTTA--TCATTAGCACTTAATAC------CCCACCTTTNCGGAACACTACTATTTTTGTTTTATTAACGTTAACCGTTAAGTTTCATTTTTCACAATAGGAATATAAATTATTTAAAGATTNCTGGAGTCCCTC----TTTT-----C-GA---CA-AATTACGGCATCGTCCGC-AAACAGCAACAGATAAATTGGTAACT-----GTTCAAC-AGAA-TACCAA-CCG--ACATTAATATCCT--GTT---GGAGATGCATTTCAANATCATT--CA-AAAAA-GNGAAAATAA-AATCGG-AGAAGTGATCTCCCCTTGCAATAATCCAATGTCGCA-CTCGAANACATCT-GATAAAA--TGTTCAGNTGTTTTACACACGATTTGACCTCGTTATAC--ATAGATCGAATTAGTG-CGAATAGTTTGCCGTCNATACTTGA-TTTG--ATCAGTTTAAACCACAAGCTATTTCGGTCAATTAAATCATANGCTTTTTTGAAGTCCACGA---AGCAACAGTACAANTTNTTCTTATTAC---CAGGTTGCT-AAT-TTCAAAATGCTGTGTCG-AT-----ATAAATATTGCATCCACGGTACTATAATTAGGTTTAAAACCGAATTGAGAGTCCGTTAGAATGTCATTTTGTGAAGACCATTTTTTTAAACGCTCATTTAATATAACGGTAAAAAGCTTNGCA
finalCons : TTTGTGAGAGTGTTATCTTGGTATTTAGAAACAATCAT---AC-AA-AATTATTTTAAGCATAAACT-CAATACAAATTTAAATTACAATAAA-ACAATGTATTCTAC-ATT-AAA-CTG-TTAAACGAGAATCCCTGAGTTTGAAACCCTTAATACAATAAGTTGCAAGTTTGTTTAAAATCGA--TT-TTTT--GTCAATATTAAGAAGGTTAATAAATTTAAACATGCTTGGATGAGTTGAATAA-----------------TATTTAGGTA------TATATAATTTTCTCAGATCATTA----TAAAATGGGCAAATAAGTATGAAAATGGTATTCGTCTTCNACGTCGTTTAAGTCACAACGTCAACATTTTCTTTGATCTCT-TGC---TT--T-TTGATGTCGTCCNGTTTCTACGGCTAGTTTATGTGATGATAATCGTATTTTAGCTATAGTGTTTCTATATTTTACATTTTCTAAACATAAATA---AGNAGAAGGCTCAAAT-------------GTCTGTTTTAAATGTCTGTATA--------T--ATA--T-A--------------AAGATGTACATGTGACC--ATACATTCCC---GCCAAT--TTGCAA----TGTA---T--ATATCTCTAAGCCTAGTCCGTAATAATGGTATGAAACAGTT----AATATTGACTGATTCNGGAAACATCCAAACGTCTGCATANCCTGCATT---AT-GTAAAATCGATCGGACTTTAAAG--GC-CCA-ATT-TTGAANATTGTGATTTTCGTCAATTTC----CCTTCTTTGACTATGTATTATTGACCGTA---G-AATACAA-TTATCTTGCTT-ATT---CCCATGTAATTTAATGAAGTATTTA-----ACAAT-TCTCAGATATCTTCCTATATA---AAGTGGAAATCGACCTAACTCGGAATATAAAGATAA--AGAATT-TGT--AGACANTTTTACATTAAGNANCTATTTACAAAACATTTTTGTACTCTGTGAATACNCTCAATGTTGTCTAGT----CGAA-CCCCATACTTCACAACTATAATTTAATACTGATACAACGT---ATGCGTCAAATAGGTTAAAC--AT-TATATGGT-A-TAG-G--C-TT----CAATAT-TTTTTGTTACGCTAAACAACGGAC---TCATNGCCCGNAGNGCT---TTACCAG--ATAGCGTATTTGCTCGCA---TNN---ATAA---NNGA-CCCNCCACTTG-ACATA-ACTATTCCTAGATAATTGAAAC-TACTAACAATTTCNATCTCCTTNCCANCGTATGTCCATTTA--TCATTAGCACTTAATAC------CCCACCTTTNCGGAACACTACTATTTTTGTTTTATTAACGTTAACCGTTAAGTTTCATTTTTCACAATAGGAATATAAATTATTTAAAGATTNCTGGAGTCCCTC----TTTT-----C-GA---CA-AATTACGGCATCGTCCGC-AAACAGCAACAGATAAATTGGTAACT-----GTTCAAC-AGAA-TACCAA-CCG--ACATTAATATCCT--GTT---GGAGATGCATTTCAANATCATT--CA-AAAAA-GNGAAAATAA-AATCGG-AGAAGTGATCTCCCCTTGCAATAATCCAATGTCGCA-CTCGAANACATCT-GATAAAA--TGTTCAGNTGTTTTACACACGATTTGACCTCGTTATAC--ATAGATCGAATTAGTG-CGAATAGTTTGCCGTCNATACTTGA-TTTG--ATCAGTTTAAACCACAAGCTATTTCGGTCAATTAAATCATANGCTTTTTTGAAGTCCACGA---AGCAACAGTACAANTTNTTCTTATTAC---CAGGTTGCT-AAT-TTCAAAATGCTGTGTCG-AT-----ATAAATATTGCATCCACGGTACTATAATTAGGTTTAAAACCGAATTGAGAGTCCGTTAGAATGTCATTTTGTGAAGACCATTTTTTTAAACGCTCATTTAATATAACGGTAAAAAGCTTNGCA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): AAATGATATTCATCGTTGTAGTTGCAAAGTACCATTTTTTTTTTCATTTATATCTAGTATATTTCTGTCACGTCCGTTCTAAATGTACACACTTTTTTAAGCTATTACATTTTCATGATTTCATTGTTCAATTTTAACAAGTATTCTGCTATTTGGTAAGCATGTTTGATAGTGCTGTACAAAATAAGCGAGTAGTGGTTTAAATTTTTCTTCTCAATGGTCTATATGAATATTTCTCAATCTATTCCTTAACAATCCTATGGA
Unaligned ( gi|38 ): GTGGTCTGATATTTGGTAAGTATGTTTGTACAATACATTTCGCACTTTAGAAAACCAATTGTTTTGCATCCTGGTATGTTTCAATTTCTTGCATCTGTACATTTTTAATGGTATTTAAAACACAAGACTTTTTTCTTT
Unaligned ( gi|46 ): TAGTATTTGTCTCCAATACATAAACCAGAGACATAAACA
Alignments
lowQualScore : 1 222 44444444444444444 111111 1111 1 1 3333333333 3333333333333 444444444444444444444444444444444 22222 111 11 1 11 3333333333 11 1 77777777777777 111 3333333333333333333333 1111 111 222222222 11111 1 222222 11 888888888888888888888888 1 22222 1 333333333333333 11 111 11 1 11 111 11 1 1 11 111 9999999999999999999999999999999999999999999
lowQualScore : 777 5 3 2 2 1 666 2 2 2 2 2 2 1 99 6 99 1 66666666666666666 999999 4444 0 5 1 0 9999999 7 3 4444444444 7 1 777 2 5555555555555 555555555555555555555555555555555 55 7777 44 7777 555 44 7777 1 1 666 3 0 55 3 3 3 4 7777 777 4 4 9999999 11 00000 8 0 3 444 66 5 3 1 11 0 33 1 0 1 1 0000000000 1 88 5 66666666666666 0 111 77 5 5 3333333333333333333333 0 5 4 4 2 888 1 33 22 888 77 0 0000 000 000000000 33333 6 1 6 6 0 3 8 1 1 1 1 555 7 99 3 333333 1 5 0 0 11 1 6 444444444444444444444444 66 4 0 0 666 0 1 2 55555 0 0 0 666666666666666 0 33 777 8 1 11 8 999 999 5 8 5 1 1 8 3 1 00 8 0 111 99 1 4 1 11 1 3 0 4 88 55 0 33 0 0 9 1 1 111 1 1 8888888888888888888888888888888888888888888 0 7 1
lowQualScore : ... . . . . . ... . . . . . . . .. . .. . ................. ...... .... . . . . ....... . . .......... . . ... . ............. ................................. .. .... .. .... ... .. .... . . ... . . .. . . . . .... ... . . ....... .. ..... . . . ... .. . . . .. . .. . . . . .......... . .. . .............. . ... .. . . ...................... . . . . . ... . .. .. ... .. . .... ... ......... ..... . . . . . . . . . . . ... . .. . ...... . . . . .. . . ........................ .. . . . ... . . . ..... . . . ............... . .. ... . . .. . ... ... . . . . . . . . .. . . ... .. . . . .. . . . . .. .. . .. . . . . . ... . . ........................................... . . .
lowQualScore : 333 3 3 1 7 9 111 8 7 7 7 7 7 0 22 7 22 4 77777777777777777 222222 2222 8 5 0 7 3333333 3 3 7777777777 3 0 000 4 0000000000000 111111111111111111111111111111111 00 6666 66 1111 888 66 7777 0 0 444 6 5 00 6 6 6 5 7777 888 4 4 2222222 88 00000 0 8 2 000 66 0 2 0 00 0 88 0 8 0 0 0000000000 0 55 5 22222222222222 7 777 99 7 0 6666666666666666666666 1 0 2 2 2 888 0 55 11 888 99 6 8888 555 333333333 77777 7 0 7 7 3 7 0 4 0 0 0 000 8 22 5 000000 0 0 2 7 00 0 5 555555555555555555555555 88 2 0 2 555 8 2 5 00000 2 0 2 555555555555555 8 88 555 8 0 00 0 000 444 0 0 0 0 4 0 2 0 66 0 6 666 22 0 2 4 00 4 2 0 2 00 88 0 88 2 2 0 0 0 777 0 0 3333333333333333333333333333333333333333333 7 3 0
consensus : TTTGTGAGAGTGTTATCTTGGTATTTAGAAACAATCAT---AC-AA-AATTATTTTAAGCATAAACT-CAATACAAATTTAAATTACAATAAA-ACAATGTATTCTAC-ATT-AAA-CTG-TTAAACGAGAATCCCTGAGTTTGAAACCCTTAATACAATAAGTTGCAAGTTTGTTTAAAATCGA--TT-TTTT--GTCAATATTAAGAAGGTTAATAAATTTAAACATGCTTGGATGAGTTGAATAA-----------------TATTTAGGTA------TATATAATTTTCTCAGATCATTA----TAAAATGGGCAAATAAGTATGAAAATGGTATTCGTCTTCNACGTCGTTTAAGTCACAACGTCAACATTTTCTTTGATCTCT-TGC---TT--T-TTGATGTCGTCCNGTTTCTACGGCTAGTTTATGTGATGATAATCGTATTTTAGCTATAGTGTTTCTATATTTTACATTTTCTAAACATAAATA---AGNAGAAGGCTCAAAT-------------GTCTGTTTTAAATGTCTGTATA--------T--ATA--T-A--------------AAGATGTACATGTGACC--ATACATTCCC---GCCAAT--TTGCAA----TGTA---T--ATATCTCTAAGCCTAGTCCGTAATAATGGTATGAAACAGTT----AATATTGACTGATTCNGGAAACATCCAAACGTCTGCATANCCTGCATT---AT-GTAAAATCGATCGGACTTTAAAG--GC-CCA-ATT-TTGAANATTGTGATTTTCGTCAATTTC----CCTTCTTTGACTATGTATTATTGACCGTA---G-AATACAA-TTATCTTGCTT-ATT---CCCATGTAATTTAATGAAGTATTTA-----ACAAT-TCTCAGATATCTTCCTATATA---AAGTGGAAATCGACCTAACTCGGAATATAAAGATAA--AGAATT-TGT--AGACANTTTTACATTAAGNANCTATTTACAAAACATTTTTGTACTCTGTGAATACNCTCAATGTTGTCTAGT----CGAA-CCCCATACTTCACAACTATAATTTAATACTGATACAACGT---ATGCGTCAAATAGGTTAAAC--AT-TATATGGT-A-TAG-G--C-TT----CAATAT-TTTTTGTTACGCTAAACAACGGAC---TCATNGCCCGNAGNGCT---TTACCAG--ATAGCGTATTTGCTCGCA---TNN---ATAA---NNGA-CCCNCCACTTG-ACATA-ACTATTCCTAGATAATTGAAAC-TACTAACAATTTCNATCTCCTTNCCANCGTATGTCCATTTA--TCATTAGCACTTAATAC------CCCACCTTTNCGGAACACTACTATTTTTGTTTTATTAACGTTAACCGTTAAGTTTCATTTTTCACAATAGGAATATAAATTATTTAAAGATTNCTGGAGTCCCTC----TTTT-----C-GA---CA-AATTACGGCATCGTCCGC-AAACAGCAACAGATAAATTGGTAACT-----GTTCAAC-AGAA-TACCAA-CCG--ACATTAATATCCT--GTT---GGAGATGCATTTCAANATCATT--CA-AAAAA-GNGAAAATAA-AATCGG-AGAAGTGATCTCCCCTTGCAATAATCCAATGTCGCA-CTCGAANACATCT-GATAAAA--TGTTCAGNTGTTTTACACACGATTTGACCTCGTTATAC--ATAGATCGAATTAGTG-CGAATAGTTTGCCGTCNATACTTGA-TTTG--ATCAGTTTAAACCACAAGCTATTTCGGTCAATTAAATCATANGCTTTTTTGAAGTCCACGA---AGCAACAGTACAANTTNTTCTTATTAC---CAGGTTGCT-AAT-TTCAAAATGCTGTGTCG-AT-----ATAAATATTGCATCCACGGTACTATAATTAGGTTTAAAACCGAATTGAGAGTCCGTTAGAATGTCATTTTGTGAAGACCATTTTTTTAAACGCTCATTTAATATAACGGTAAAAAGCTTNGCA
Reference ( family-805 ) : TTTGTGAGAGTGTTATCTTGGTATTTAGAAACAATCAT---AC-AA-AATTATTTTAAGCATAAACT-CAATACAAATTTAAATTACAATAAA-ACAATGTATTCTAC-ATT-AAA-CTG-TTAAACGAGAATCCCTGAGTTTGAAACCCTTAATACAATAAGTTGCAAGTTTGTTTAAAATCGA--TT-TTTT--GTCAATATTAAGAAGGTTAATAAATTTAAACATGCTTGGATGAGTTGAATAA-----------------TATTTAGGTA------TATATAATTTTCTCAGATCATTA----TAAAATGGGCAAATAAGTATGAAAATGGTATTCGTCTTCNACGTCGTTTAAGTCACAACGTCAACATTTTCTTTGATCTCT-TGC---TT--T-TTGATGTCGTCCNGTTTCTACGGCTAGTTTATGTGATGATAATCGTATTTTAGCTATAGTGTTTCTATATTTTACATTTTCTAAACATAAATA---AGNAGAAGGCTCAAAT-------------GTCTGTTTTAAATGTCTGTATA--------T--ATA--T-A--------------AAGATGTACATGTGACC--ATACATTCCC---GCCAAT--TTGCAA----TGTA---T--ATATCTCTAAGCCTAGTCCGTAATAATGGTATGAAACAGTT----AATATTGACTGATTCNGGAAACATCCAAACGTCTGCATANCCTGCATT---AT-GTAAAATCGATCGGACTTTAAAG--GC-CCA-ATT-TTGAANATTGTGATTTTCGTCAATTTC----CCTTCTTTGACTATGTATTATTGACCGTA---G-AATACAA-TTATCTTGCTT-ATT---CCCATGTAATTTAATGAAGTATTTA-----ACAAT-TCTCAGATATCTTCCTATATA---AAGTGGAAATCGACCTAACTCGGAATATAAAGATAA--AGAATT-TGT--AGACANTTTTACATTAAGNANCTATTTACAAAACATTTTTGTACTCTGTGAATACNCTCAATGTTGTCTAGT----CGAA-CCCCATACTTCACAACTATAATTTAATACTGATACAACGT---ATGCGTCAAATAGGTTAAAC--AT-TATATGGT-A-TAG-G--C-TT----CAATAT-TTTTTGTTACGCTAAACAACGGAC---TCATNGCCCGNAGNGCT---TTACCAG--ATAGCGTATTTGCTCGCA---TNN---ATAA---NNGA-CCCNCCACTTG-ACATA-ACTATTCCTAGATAATTGAAAC-TACTAACAATTTCNATCTCCTTNCCANCGTATGTCCATTTA--TCATTAGCACTTAATAC------CCCACCTTTNCGGAACACTACTATTTTTGTTTTATTAACGTTAACCGTTAAGTTTCATTTTTCACAATAGGAATATAAATTATTTAAAGATTNCTGGAGTCCCTC----TTTT-----C-GA---CA-AATTACGGCATCGTCCGC-AAACAGCAACAGATAAATTGGTAACT-----GTTCAAC-AGAA-TACCAA-CCG--ACATTAATATCCT--GTT---GGAGATGCATTTCAANATCATT--CA-AAAAA-GNGAAAATAA-AATCGG-AGAAGTGATCTCCCCTTGCAATAATCCAATGTCGCA-CTCGAANACATCT-GATAAAA--TGTTCAGNTGTTTTACACACGATTTGACCTCGTTATAC--ATAGATCGAATTAGTG-CGAATAGTTTGCCGTCNATACTTGA-TTTG--ATCAGTTTAAACCACAAGCTATTTCGGTCAATTAAATCATANGCTTTTTTGAAGTCCACGA---AGCAACAGTACAANTTNTTCTTATTAC---CAGGTTGCT-AAT-TTCAAAATGCTGTGTCG-AT-----ATAAATATTGCATCCACGGTACTATAATTAGGTTTAAAACCGAATTGAGAGTCCGTTAGAATGTCATTTTGTGAAGACCATTTTTTTAAACGCTCATTTAATATAACGGTAAAAAGCTTNGCA
gi|1 : TTTGTGAGAGTGTTATCTTGGTATTTATAAACAATCAT---AC-AA-AATTATTTTAAGCATAAACT-CAATACAAATTTAAATTACAATAAATACAATGTATTCTAC-ATT-AAAACAG-TTAAACGAGAATCCCTGAGTTTGAAACCCTTAATACAATAAGTTGCAAGTTTGTTTAAAATCGA--TT-TGTT--GTCAATATTAAGAAGGTTAATAAATTTAAACATGCTTGGATGAGTTGAATAA-----------------TATTTAGGTA------TATATAATTTTCTCAGATCATTA----TAAAATGGGCAAATAAGTATGAAA-TGGTATTCGTCTTCGATGTCATTTAAGTCACAACATTAACATTTTCTTTGGTCTCT-TGCAATTT--T-TTGATGTCGTCCTGTTTCTATAGCTAGTTTATGTGATGATAATCGTATTTTAGCTATAGTGTTTCTATATTTTACATTTTCTAAACATAAATA---AGTAGAAAGCTCAAAT-------------GTCTGTTTTAAATGTCTGTATA--------T--ATA--T-A--------------AAGATGTACATGTGACC--ATACATTCCC---TCCAAT--TTGCAA----TGTA---T--ATATCTCTAAGCCTAGTCCGTAATAATGGTATGAAACAGTT----AATATTGACTGATTCGGGAAACATCCAAACGTCTGCATAACCTGCATT---AT-GTAAAATCGATCGAACTTTAAAG--GC-CCA-ATT-TTGAACATTGTGATTTTCATCAATTTC----CCTTCTTTGACTATGTATTATTGACCGTA---G-AATACAA-TTATCTTGCTT-ATT---CCCATGTAATTTAATAAAGTAATTA-----ACAAT-TCTGAGATATCTTCCTATATA---AAGTGGAAATCGACCTAACTCAGAATATAGAGATAA--AGAATT-TGT--AGATAATTTTACATTAAGGACCCATTTGCAAAAC----TT----TCTATGAATACGTTCAATGTTGTCTAGTTTTGCGAAACCCCATACTTCACAACTATAATTTAAAACTGATAAAACAT---ATGCATCAAACAGATTAAAC--AT-TATATGGT-A-TAG-AA-C-TT----CCATAT-TTTTTGTTATATCAAAAAGCGAAC---TCATAGCTCTAAATGCT---TTACCTG--AAAGCATATTTGTT-GCA---TGA---ATAA---TAGA-CCCCCCACTTG-ACATA-ACCATTCCTAAATAGTTAAAAG-TACTAACAATTTCTATCTCCTTTCCATCATATAACCATTTA--TCATCAGCACTTAATAC------CCCACCTTTACGGAACACTACTATTTTTGTTTTATTAACATTAACCGTTAAGTTTCTTTTTTTACAATAGGAATATAAATTATTTAAAGATTTCTGGAGTCCTTC----TCTTGTCTCC-GA---CATAATTACGGCATCGTCCGC-AAACAACAACAGATATATTGATAACT-----GTTCAAC-AGAAATACCAA-C------ATTAACATTCT--GTT---GGAGATGCATTTCGATATCATT--CAGAAAAA-GAGAAAAAAA-AATCGG-AGAAGTGGTCTCCCCTTGCAATAATCCAATGTTACA-CTCGAATACATCT-GATAGAC--TGTTCAGGTGTTTTACACACAATTTGACCTCGTTATAC--ATAGAACGAATTAGTG-CAAAAAGTTTGCCGTCAATACCTGA-TTTG--ATCAGTTTAAACCACAAGCAATTACGATTTAGTAAATCATATGCTTTTAAATAATCCACGA---AGCAACAGTACAATTTCTTCTTATTA--------------AAT-----AAATGCTAT-TCA-AT-----ATAAATATTGCATCCACGGTACTATAATTAGGTTTAAAACCAAATTGCGAGTCCGTTAGAATGTCATTTTGTGAAGACCA-TTTTTTAAACGCTCATTTAATATAACGGTAAAAAGCTTTGCA
gi|10 : ACATTTTCTAAACATTAACA---AGAAGAAGGTTCAAATGTCTGTTTTAAATGTCTGNNNNNNNNNNNNNNNNN--------N--NNN--N-NNNNNNNNNNNNNN-AAGATGAAGATGTGTCC--ATACATTCCC---GCCAAT--TTGCAA----TGTACTAT--ATATCTCTAAGCCTAGTCTGTAATAATGGTATGAAGCAGTT----AATATTGACTGTTTCTGGAAACATCCAAACGTCTGCATATCCTGCATT---AT-GTAAAATTAATCGGACTTTAAAG--GC-CCA-ATT-TTGAAAATTGTGATTTTCGTCAATTTCTCTTCCTTCTTCGACTATGTATTATTGACCATA---G-AATACAA-TTATCTTGCTT-AAT---CCCAGGTAATTTAATGAA
gi|11 : TTTAGCTAAAGTGTTTCTATATTTTATATTTTCTAAACATAAATA---AGTAGAAGGCTCAAAT-------------GTCTGTTTTAANNNNNNNNNNN--------N--NNN--N-NNNNNNNNNNNNNNNAAGATGTACATGTGACC--ATACATTCCC---TCCAAT--TTGCAA----TGTA---T--ATATCTTTAAGCCTAGTCCGTAATAATGGTATGAAACAGTT----AATATTCACTGATTCGGGAAACATCCAAACGTCTGCATAACCTGCATT---AT-GTAAAATCGATCGGACTTTAAAG--GC-CCA-ATT-TTGAACATTGTGATTTTCATCAATTTC----CCTTCTTTGACTATGTATTATTGACCGTA---G-AATGCAA-TAATCTTGCT
gi|12 : GTTTTTACATTTTACATTTTCTAAACTTAAATA---AGAAGAAGGTTCAAAT-------------GTCTGTTTTAAATGTCTGTATA--------T--ATA--T-A--------------AA-ATGTACATTTGACC--ATACATTCCC---GCCAAT--TTGCAA----TGTA---T--ATATCTCTAAGTCTAATTCGTAATAATGGTATGAAATGGTT----AATATTGACTGATTCTGGAAACATCCAAACGTCTGCATATCCTGCATT---AT-GTAAAATCGATCAGACTCTAAAG--GC-TCA-ATT-TTGAAAATTGTGAGTTTCATCAATTTC----TCTTCTTTGACTGTGTATTATTGACCGTA---G-AATACAA-TTATCTTGCTTAATTAACCCCATGTAATTTAATGga
gi|13 : ---AAGTGAAAATCTATTTAACTCTGCGTATAAAGATTATTGGTATT-TGT--CAACGTTTCAACATTGATTAATTATTTACAAAACATTTTTGTACTCTGTAAATACCCTC--TG-TGT---------------CCCACACCTCCCAACTATAGTGTAATATAGATACATTATCAGATTCATAAATTAAATTGAACAAAC-TGT-TGAT-G-CAT-A--CATT----CAAC-T-CTTTTGTCACATTAAACAACTGGC---TCACAGCCCGTAACACT---TTACCAG--CCAATGTATTTGCTTGCA---GCT---ATAATGTTAGA-ACCACCAAGTATAGATACATTATTCCCAAATAATTGAAA
gi|14 : ttTTAAAT--AT-TATATGGT-A-TGG-AA-C-TT----CCATAT-TTTTTGTTATATTAAAAAGTGAAC---TCTTCGCTCTAAGTGCTAGATTATCA
gi|15 : tatttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTGTGAGATTGTTTTCTTGATATTTATATACAATCAT---AA-AATAATTATTA-AAGCAGAAATT-CATTACAAAATTAAATTACAATA----TAATGTTTTCTAC-ATT-AAA-CTG-TTAAACGAGTATG---GAAATCTATACATGTAATGCCATAAGTTACACGTTTGTATAAAATTGA--TT-TTTT--GTCAATATTAAGAAAGTTTATACATTTAAACATACATGGACGAGTTGAATAATATTTAGGTATGTATAATATTTAGGTA------TGTATAATTTTCTCAGATCATTA----TAAAATGTGCAAATAAATAtctgggaaaaacat
gi|16 : TTTGTGAGAGAGTTATCTTGGTATTTAGAAACATTCAT---AA-AATAATTATTTGAAGTATAAACT-CAATACAAATTTACATTACAA---A-ACAGAGTTTTCTAC-ATT-AAA-CTG-TTAAACAGGTATCCCTCAGTTTAAAATCCTTAATACAATAAGTTGCAAGTTTGTTTAAAAAAAAAATT-TTTT--GTCAATATTAAGAAAGTTAATTAATTTAAACATGCTTGGATGAGTTGAATAA-----------------TATTTAGGTA------TATATAATTTTCTCAGATCATTA----T-AAATTTTCAAATAAGTATGAA
gi|17 : TTTGTGAGAGTGGTTTCTTGGTATTTAGAGACAATCAT---AA-AATACTTATTTAAAGCATAAACT-CAATACATATTTATATTACAA-----ACAATGTTTCCTGC-ATT-AAA-CCG-TTAATCTAGTATCTCGGAGTTTGAAACCCTTAATACAATAAGTTGCAAGTTTGTTTAAAATT-A--TT-TTTT--GTCACTATTAAGAATGTTAATAAATTTAAACATGCTTGGATGAGTTGAATAA-----------------TAGTTAGGTATATATGTATATACTTTTCTAAGATCATTA----TAAAATAGGAAAATAA
gi|18 : aTTTGTGAGAGTGTTATCTTGGTATTTAGAAACAATCAT---AC-AA-AATTATTTTAAGCATAAACT-CAATACAAATTTAAGTTACAATA----CAATGTATTTTAC-ATT-AAA-CTG-TTAAA------TCCCTGAATTTGAAACCCTTAATACAATAAGTTGCAAGTTTGTTTAAAATCGA--TTATTTT--GTCAATATTAAGAAGGTTAATAAATTTAAACATGCTTGGATGAGTTGAATAA-----------------TATAAAGGTA------TATATAATTTTCTCAGATCATTA----TAAAATGGGCAAATAAGTATGA
gi|2 : atTTCCA-CTCCTTGTAAATGCATA-ACATTTA--TCATCAGCACTTAATAT------CCCGCCTTTGCGGAACAATACTGTTTTTGTGTTATTTACATTAACCATTTAGTTTCATTTT--ACAATTGGAATATAAACTATTTAAAGATTCCTGGAGTCC---------------------------ATTACAGCAGCATCCGC-AAATAACAACAGAAAGATTGATAACT-----GTTCAAC-AGAA--AC--A-CCA--ACATTAATATCCT--GTT---GGATATGCATTTCAATATAATT--CC-GAAAA-GAGGAAATAA-AATCGG-AGAACGGATCTCCCCGTGCAATAATCCAATGTTACA-CTGGAATACATTT-GATAGAC--TGTTCA-TTGTTTTACACACAATTTGGCCTCGTTTTAC--ATAGAACGAATTAGTG-CGAATAGTTAACCATCAATACTTGA-TTTG--ATCAGTTTAAACCACAAGC----------AAGTAAATCATATGCTTTTATATTATCCACGA---AGCAACAGTACACGTTCTCCTTATTACATACAGGTTGTTCAATGTTCAAAATATTGAGTTGTAT-----ATAAATATTGCATCGTAGGTACTATAATTAGGTTTAAAACTAAATTGAGAGTCCGTTAGATTGTCATTTTGTGAAGACCATTTTTTTAAACGCTCATTTAATATAACGGTAAAAAGC
gi|20 : TTCAACATCATT--TA-CAAAATGTGAAAAC--------------GT-ATCTACCCATGCAATAATCCTAAATTGCA-ATCAAAGAAATCTTGAGAAAA--TATTCAGATGTTTGACACA--GTCTAATTTCGTTATAA--ATGGATCGAA-TAATACCGAGTAATTTACCCTCT-TA-TTCA-TTTGTTATCAATTTGAATCAAAATCCATTTCTGTATATTGAATCAAACGCCCTTTTCAGATCTATAAGACGGCAATAATACAAATTAGTTTTGTTgtt
gi|21 : ACATAAATA---AAAAGAATGTTCAAAT-------------ATCGGTGTCAAATGTCTGTATA--------T--ATA--T-A--------------AAGATGTACATGTGACC--ATACATTCCC---TCCAAT--TTGCAA----TGTA---T--ACATTTCTAAGCCTAGTCCGTAATAATTATGTAAAAccttat
gi|21 : ATT---AT-GTAAAATCGATCGGACTTTAAAG--GC-CCA-ATT-TTGAA--TTGTGAATTTTGTCAATTTC----TCTTCTTTGACTATATATTACTGACCGTA---G-A----------------------------ATGTTATTTAATGAAGTATTTA-----ACAAT-TCTCAGATtcgatcggactttaaaggcccaattttgaattgtgaattttgtcaatttctcttctttgactatatattactgaccgtagaatgttatttaatgaagtatttaacaattctcagat
gi|22 : acataaataaaaagaatgttcaaatatcggtgtcaaatgtctgtatatatataaagatgtacatgtgaccatacattccctccaatttgcaatgtatacatttctaagcctagtccgtaataAACGT---ATGAGTCAAATAGGTTAAAC--AT-TATATTG--A-TAG-GTAT-TT----C-ATATGTTTTTGTTACGCTAAGCAAGGTAC---TCATTGCCCGCAAGGCT---TTACCAG--ATAGAG----TGCTCGCGTTTTTA---ATAA---ATGA-CCCTCCACTTG-ACAAA-ACTATACCTAGATAATTGAAAC-TGTTGACTATTTCAAT-TTCTGAC--TCGGATGTCCATTTA--TCATTTTTACTTAACAT------CCCACCCTTTC-GAACA
gi|23 : ACAT---ATGCGTCCAATAGGTTAAAC--AT-TAT-TG-T-A-AAT-G--TATT----TAATAC-TGTTT-TCACGCAAAACATTGGAC---TTGTTGACCGCAAGAAT---TTACCAG--ATAGAGT----GCCCACA---TTTTTCATAA---ATGA-TCCACCACTTG-ACACT-ACTATACCTAGATATATAAAAC-TATTAAATATTT-TATTTCTGTTGCGGCATAGGTCCATTTATTTCGTTG--ACTTAACAtgttttaaacat
gi|24 : TCACTC----TTTC-----T-GAA--TA-GATAACAGCATCATCTGC-AGAAAGC------TAAAATGGTAA-TAAAAAGTTGAGCTAAAA-T--CAGGCTG--GTATTATGATCAT--GTT---GAAGAAAGAGTTCAAAGACAGTAACG-AACAA--TGACAGTAC-AATCGGTAAGAGT-ATCTCTCCTTGTAAGGATCCAATTTCGCA-ATTGTAGA---------AAAAGTTATTTATATGTTTAACACACgc
gi|25 : agaATA--------T--ATA--T-A--------------AAGATGTACATGTGACC--ATACATTCCC---GCCAAT--TTGCAA----TGAC---T--ATATCTCTAAGCCTAGTCCGTAATAATGGTATGAAACAGTT----AATATTGACTGATTCGGGAAACATCCAAACGTCTGCATAACCTGCATT---AT-GTAAAATCGATCGGACTTTAAAG--GC-CCA-ATT-TTGAAAATTGTGATTCTCGTCAATTTC----TCTTCacat
gi|26 : AT-GTTTTGTTGTATTAAAAAAAGAAC---TCATAGCTCTAAGAGCT---TTACCTG--AAAGCGTGTTTGT--GCA---TGA---ACAA---TAGAACCCCCTATTTG-ACATA-ATCATTTCTTAATAGTT-AAACGTACTAACAATGTCTTTCTCCTTTCCATCATATAACCATTTA--TCATTAACACTTAATAC------CCCATCTTTACGGAACACTA
gi|27 : TTTAAC-ATAA-TATTAA-CCGGCACATTCATACCCTTTGTCATAGGGGGTA-ATTTCCAAGTCGTC--CA-AAACA-GGGAAAATAATAAT-GG-GGAAGTTATCTCCTCTTGAAACTATCCAATATCGCAGCTAAAAAAC-TCT-GATAAGA--TGATGAATTGTTTTTCACACGAGTTAACATCTTTGTACAGATAGATCG
gi|28 : TTCTT---GCCAATGATT--------TATA---TGAATATCTCTTAATCTATTCCTTAACAAAGGTATGAACAAGTT----TACAAAAACTGATTCCGGATACATCCATATTTCTGCAAAGCC
gi|29 : ttctgtacaaagacaacgaagtgtggattaaaatagtTTTGTGAGAGTGTTATCTTGGTATTTAGAAATAATCAT---AC-AA-AATTATTTTAAGCATATA-T-CAATACAAATTTAAATTACAACA----CAATGTATGCTAC-ATT-AAA-CTG-TTAAACGAGAATCCCTGAGTTTGAAACCCTTAATACAATAAGCTGCAAGTTCATTTAAAATCGA--TT-TTTTTGGTCAactttggcacattcgaagaccagttttttgcattctggtttgtt
gi|3 : atATAA-----------------TGTGTTTGAA------TATATTGCTTACGCAGA-CATTGCTTGTAATAAGGACAATTAAA-ATAAAAATAATATTCGTCTTCTACATCGTTTTTGTCA------------TTTCT---ATATCTATG----TT--T-CTG-TGACGTCCGGTTTCTACGTACAATCTGTGAGATGATAATCTTATTTAAGCTATAACATTTTT-TGTTCAATATT-----AACAT------------GTAGTCTGACATTTGGTAA------GTATGTTTCATATTGCCGTGCA-----------AAA--TCA--------------ACGA---ACA-GTGGCTTAATCTATTTTCATGACTGGT--TTG-------TGTG---A--ATGTCTCTCAATATATTCCTTAATACAGGTATG-CATATTTTTACAATA---ACTGATTCCGG-AGTGTCGATATTTCTGCAAAACC-ACATTGGCATAGTAAATT---TCGCACTT--AAGCAGA-CCA-ATTGTTG--CATTCTAGTTTGTTTCAATTTC----ACATCT----CTATACATT-TTAACTGTGTTTGTAACGCAATTTATCTTTTTT-TTC---TTCATACA----AATAGAGT-----------CAATATTTC--AT-TATTCATATGTATGTACCTTGCAATTTACCCGTTTCTGAATAAAAAGATCA--TTAATCATGTGAAGACATATGTACATTAAGCGTCTATTTACAGAA
gi|30 : atatgatactgggtttgtggatTTTGTGAGAGTGTTATCTTGGTATTTAGAAACAATCAT---ACCAA-AATTGTTTTAAGCATAAACT-CAATACAAATTTAAATTACAATAAATACAATGTATTCTACTGTT-AAA-CTG-TTAAACGAGAATCTCTGAGTTTGAAACCCTTAATACAATAAGTTGTAAATTTGTTTttgtctatg
gi|31 : atGAGTGTTATCTTGGTATTTAGAAACAATAAT---AA-AATAAATATTTAAACCATAATCT-CATTACAAATTTAAATTACGATACA-A-AGTTT-TTCTGC-ATT-AAA-CTG-TTAAAAGAGCATCTCTGAGTTTGAAACCCTTAATACAATAAGTTGCAA
gi|32 : tttttttTTTGTGAGAGTATTATCTTGGTATTTAGAAACAATCAT---AC-AA-AATTATTTTAAGCATAAACT-CAATACAAATTTAAATTACAATAAATACAATGTATTCTAC-ATTAAAA-CTG-TTAAACGAGAATCCCTGAGTTTGAAACCCTTAATAC
gi|33 : tatTTTGTGAGAGTGTTATCTTGGTATTTAGAAACAATCAT---AC-AC-AATTATTTTAAGCATAAACT-CAATACAAATTTAAATTACAATAAATACAAGGTATTCTAC-ATT-AAA-CTG-TTAAACGAGAATCCCTGAGTTTGAAACCCTTAATAC
gi|34 : tatTTAAGCATAAAAT-CAATACAAATTTAAATTACAATA----CAATGTATTCTAT-ATT-AAA-CTG-TTAAACGAGAATCCCTGAGTTTGAAACCCTTAATACAATAAGTTGCAAGT
gi|35 : gcttagtaatttgacagtcttcatcaaaccatttggtagtgTTTGTGAGAGTGTTATCTTGGTATTTAGAAACAATCAT---AC-AA-CATTATTTTAAGCATAAACT-TAATACAAATTTAAATTACAATAAATACAGTGTATTCTAC-ATT-AAA-CTG-TTAAACGAGAATCCCTGAGTTTGAAACCCTTAATA
gi|36 : atTTTGTGAGAGTGTTATCTTGGTATTCAGAAA-AATCAT---ACAAA-AAATATTTTAAGCATTAACT-CAATACAAATTTTAATTACA--AAA-ACAATGTATTCTAT-ATT-AAA-CCA-TTAAACGAGAATCCTTGTGTTTGAAACTCCTAATA
gi|37 : atTTTGTGAGAGTGTTATATTGGTATTTAGAAACAATCATTAAAT-AA-AATT--TTAAAGCATAAACT-CAATACAAATTTACATTACAATA----CAATGTTTTCTAC-ATT-AAA-CTA-TTAAACAAGTATTCCTGAGTTTGAAACCCGTAAT
gi|39 : ttAGAGT-TTATCTTGGTATTTAGAAACAATCATA--AC-AT-AATTATTTAAAGCAT-TACTGCAATACAAATTTAAAT---AAAAAA-ACA---------GC-ATT-AAA-CTGTTTAAA-----------GAGT----AACCCTTGCTACAATAAGTTACAAG
gi|4 : GCTAGTTTATGTGATGATAATCGTATTTTAGCTATAGTGTTTCTATATTTTACATTTTCTAAACATAAATA---AGTAGAAG-CTCAAAT-------------GTCTGTTTTAAATGTCTGTATA--------TTTATA--T-A--------------AAGATGTACATGTGACC--ATACATTCCC---TCCAAT--TTGCAA----TGTA---T--ATATCTCTAAGCCTAGTCCGTAATAATGGTATGAAACAGTT----TATATTGACTGATTCGGGAAACATCCAAACGTCTGCATAACCTGCATT---AT-GTAAAATAGATCGAACTTTAAAG--GC-CCA-ATT-TTGAACATTGTGATTTTCATCAATTTC----CCTTCTTTGACTATGTATTATTGACCGTA---G-GATACAA-TTATCTTGCTT-ATT---CCCATGTAATTTAAT
gi|40 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaTTTCACCTCATCATAC--ATGGATCTGATTAATG-AGAATAATTTGCCATTTGT-CTCGGGTCTT--ATTAATTTAAACCATACACTATTTCGGCCAATTAAATCATTGGCTTTTTTGAAGTCCACGA---
gi|41 : CGT---GTGAGTCAAATAGGTTGAAC--ATGTTTATGTTTA-TAG-G--T-GTGTGCTAATAT-TTT--GTTGCGCTAAACAATGTAC---TTATTGTACGCAGGGCT---TTACCAG--ATA
gi|42 : TCATTTAAGTCACAACGTCAACATTTACTTTGATCTCT-TGC---TTGATGTTGATGTCGTCcagtacccgc
gi|43 : gaaatgacaattTTTTGAGAGTGT-ATCTTGGTATTTAGAAACAATCAT---AA-AATAATTATTTTAAGCATAA
gi|44 : attaCTATTTCGGCCAATTAAACCATTGGCTTTTTTGAAGTCCACGA---A
gi|45 : a----CGAATCCCCATCTTTCACAACCATAATTTAAtaatt
gi|5 : GCTAGTTTATGTGATGATAATCGTACTTTAGCTATAGTGTTTCTATATTTTACATTTTCAAAACTTAAATATTAAGAAGAAGGTTCAAAT-------------GTCTGTTTTAAATGTCTGTATATATATATAT--ATA--T-A--------------AAGATGTACATGTGACT--ATACATTCCC---GCTAAT--TTGCAA----TGTA---T--ATATCTCTAAGCCTAGTCCATAATAATGTTATGAAACAGTT----AATATTGACCGATTCTGGAAACATCCAAACGTCTGCATATTCTGCATT---AT-GTAAAATCGACCGGACTTTAAAG--GC-CCA-ATT-TTGAAGGTTATGAGTTTCGTAAATTTC----TCTTCTTTGgccatatg
gi|6 : ataagtttgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaATTTCGGTCAATTAAATCATAGGCTTTTTTGAAGTCCACAA---AACAACAGAATAATTTATTTTTACCGC---CAAGTTGCT---T-TTCAG--T-CAGTG--A-ATTAAGGATGAATATAGCATCCACCGTACTCTAATTGGGTTTAAACCCGAACTGAGCGACAGTCAACATATCATTTTCGGCGGCCCATTTTTTTAATCGCTCATTGATTATAACAGTGAAAAACTTGGCA
gi|7 : ACATTTTCTAAACTTAATTA---AGATGACGGTTCAAAT-------------GCCTGTTTTAAATGTCTGTATA------------------A--------------AAGATGTACATTTGACT--ATATCTTTAC---GCCAAT--TTGCAAAATATATA---T--ATATATCTAAGCCTAGTTCGTGATGATGGTATGAAACAGTT----AATATCGACTGATTCTGGAAACATCCAAACGTTTGCATATCCTGCATT---AT-GTAAAATAGATCTGACTTTAAAT--GCTTTACATT-TTGAGAATTGTGAGTTTCGTCAATATT----TCTTCTTTGACTATGTATTATTGATCGTG---G-AATACAT-TTATCTTGCTT-AAC---CCCATGTAATTTAGTCAAGTATTTAACAATACAAT-TCTCAAATATCTTGCTATATA---TAGTGGATATCGACCTAACTCGGAATATAAAGATAA--AAATTT-TGT--AGATAATTTTACATTAAGaaacaacttgttatagttagactctatataattatttgggtccgttgttgtcctctttttaaataatggtataatgacaccagttgaccaactacgtggaaattttttttttatctaatatatgattgaacaatttagccagcggctgtgaaattacatcaaaactttccttaaagtattcgtataaaatattatcgaacaagcatgatttattggtattt
gi|8 : AATACTGGCCCAACAA---AAGCATCAAATAGATTAAAC--AA-TATATT-T-ACTGGCG--C-CT----TAACCT-TTCTTGTCATG---GACAATAGACAGCTCATCGACTTAATTGCT---TTATCGGCCATAGC--ATTTG-TCGCT---TGT---GCAA---ATGA-CCCTCCACTCG-ACATT-TTTAATCCGAGATCATTGAAAC-AGCTTACAGTTTCAATCACCTGACCCGCGTATGTCCA-------CAATA-CATTTCGTGCAAGTTGTCCACTTTTCCTGAATATAACAAGTTTTTTTTTTTTAATGTTAACGGTTAAATTCCAATCTTCGCAATAGTGTTCTAGTTTATTTAACGACGACTGGAGTCCCTCGGCACTTT-----CAGATAGCA-AA--AATGCATCGTCCGCGAAACAG-AGCAGGTAAATTTGTAGCT-----Gg
gi|9 : atacctcatttgagtaaaacTACATTTTCTAAACATAAATA---AGTAGAAGGCTCAAAT-------------GTCTGTTTTAAATGTCTGTATA--------T--ATACAT-A--------------AAGATGTACATGTGACC--ATACATTCCC---TCCAAT--TTGCAA----TGTA---T--ATATCTCTAAGCCTAGTCCGTAATAATGGTATGAAACAGTT----AATATTGACTGATTCGGGAAACATCCAAACGTCTGCATAACCTGCATT---AT-GTAAACTCGATCGAACTTTAAAG--GC-CCA-ATT-TTGAACATTGTGATTTTCATCAATTTC----CCTTCTTTGACTATGTATTATTGACCGTA---G-AATACAA-TTATCTTGCTT-ATT---CCCATGTAATTTAATGAAGTATTTA-----ACAAT-TCTCAGATATCTTCCTATATA---AAGTGG----------AACTCGGAATATAGAGATAA--AG
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): AAATGATATTCATCGTTGTAGTTGCAAAGTACCATTTTTTTTTTCATTTATATCTAGTATATTTCTGTCACGTCCGTTCTAAATGTACACACTTTTTTAAGCTATTACATTTTCATGATTTCATTGTTCAATTTTAACAAGTATTCTGCTATTTGGTAAGCATGTTTGATAGTGCTGTACAAAATAAGCGAGTAGTGGTTTAAATTTTTCTTCTCAATGGTCTATATGAATATTTCTCAATCTATTCCTTAACAATCCTATGGA
Unaligned ( gi|38 ): GTGGTCTGATATTTGGTAAGTATGTTTGTACAATACATTTCGCACTTTAGAAAACCAATTGTTTTGCATCCTGGTATGTTTCAATTTCTTGCATCTGTACATTTTTAATGGTATTTAAAACACAAGACTTTTTTCTTT
Unaligned ( gi|46 ): TAGTATTTGTCTCCAATACATAAACCAGAGACATAAACA