lowQualScore : 11111111111 1111111111111111
lowQualScore : 11111 11111111 222222222 11111 77777777777 111 55555555555 1 1111111111 1 1 2222222222222222 11 22222222 3333
lowQualScore : 6 5 4 9 3 2 77 1 44444 88888888 222222222 11111 4 4 9 6 44444444444 555 00000000000 3 0000000000 2 6 0 3 7 5 5 0 8888888888888888 33 5 1 4 6 666 2 2 6 11111111 6 2 0 3333
lowQualScore : . . . . . . .. . ..... ........ ......... ..... . . . . ........... ... ........... . .......... . . . . . . . . ................ .. . . . . ... . . . ........ . . . ....
lowQualScore : 0 7 9 0 2 7 22 1 33333 11111111 999999999 00000 3 3 3 0 44444444444 666 99999999999 4 3333333333 4 5 2 2 1 0 0 1 8888888888888888 99 3 9 4 0 444 1 8 2 55555555 2 9 7 2222
consensus : AGGGCCTGTCACACACTA-CCGATGTACCTCGCCGGGACTAAACCGGAGCAAAAAATTAACAACGGCGA-----GAAAATCGG--------CGG---------AGCT---CCGGCGAGAAAGCCGCCGATCCATTACGGGGCGCTACCGGTGCTCTACCGACATTAACGAAGCCATACCGGAGTACT------GTACTGCCGTTGTAGTCCCGTTG-----------CTCGCTCCGGCAGCGCGACGGC----------GGAAATTT-TTGAGCATGCTCAAAAATTTCTACCGTCGCGCTGCCGTTGCTAAATTT-TT-CGCCGATGTTCTGA-------CTGACGATGTCCTGACGATGTACTACCGTTCTT-TAGCGATGTGATACCGTTGCGCTGCCGTAC---TAGTACCGATCCCCGAAA-ATCGC-C------A-AA-TTTGTGCTCCGGTATAGCTCCGGCGACCCAA--ATCGGCTAGGT
Reference ( gi|1 ) : AGGGCTTGTCACACACTA-CTGATGTAGCTCGCCGGGACTAAACCGGAGCAAAAAATTAACAACGGCGA-----GAAAATCGG--------CGG---------AGCT---CTGGCGAGAAAGCTGCCGATCCATTACAGGGCGCTACCGGTGCTCTACCAACATTAACAAAGCCATACCGGAGTACTGCCGTTGTACTGCCGTTGTACTGCCGTTGTAATATCATTCCTCGCTCCGGCAGCGCAACGGC----------GGAAATTT-TTGAGCGTGTTCAAAAATTTCTTCCGTCGC-CTGCCGTTGCTAAATTT-TT-CGCCGATGCTCTGACAATGCTCTGACGATGCTCTGACAATGTACTACCGTTCTT-TAGTGATGTGATACCGTTGCGCTGCCGTAC---TAGTACCGATCCTCGAAA-ATCGC-C------A-AA-TTTGTGCTCCGGTATAGCTCCGGCGACCCTT--ATCGGCTAGGTA
gi|2 : AGTGCCTGTCACAAACTA-CCGGTGTACCTCGCCGGGACTAAACCGGAGCAAAAA-TTA-CTACGGT-A-----TCACATCGGTACCAGTACGGTACACATTGAGGT---C--ACCGGAAAGCCGCCGATCCATTACGTGACGTTACCGGTGCTCTACGTACAATAACGAAGCCATACCGGAGTACT-----------GCCGTTGTAGTCCCGTTG-----------CTCGCTCCGGCAGCGCAACGGT----------GGAATTTT-TTTAGAATGTTCAAAACTTTCTACCGTCGC-CTGCCGTTGCTAAATTT-TTTCGCCGATGTTCTGA-----------CGAAGTCCTGACGATATACTACCGTTCTT--AGCGATATGATACCGTTGCGCTGCCGTAC---TAGTACCGATCCCCGAAA-ATCAT-C------A-AA-TTTGTGCTCCAGTATCGCTCCAGCGA--CTTAAATCGGCTAGAT
gi|15 : aAGGGTCTGTCACCCACTA-CCGATGTACCTCGCCGGGACTAAANNNNNNNNNNATATT
gi|6 : aGGACCTGTCACACACTA-CTGATGTACCTCGCCGGGAATAAAtc
gi|5 : GGCCTCTCACACACTA-CCGATGTACCTCGCCGAGACTAAACCGGAGCAAAAAATTAATAACGGCGA-----GAAAATCGG--------TGG---------AGCT---CCGGCGAGAAAACCGCCGATTCACTACGGGGCGCTACCGGTGCTCTACCGACATTAACGAAATCATACCGGAGTAC-----------TGCCGTTGTAGTCCCGTTG-----------CTCGCTC-----------CGAC----------GGAAATTT-TTGAGCATGTTCAAAAATTTCTACCGTCGC-CTGCCGTTACTAAATTTGTT-TGCCGATGTT-----------CTGACGATGTCCTGACGATGTATTACCGTTCTT-TGGCGGTGTGATACCGTTGCGCTGCCGTAC---TAGTACTGATCCCCGAAA-ATCGC-C------A-AATTTTCTGCTCTGGTATAGCTCCGGCGACCCAA--ATCGGCTAGgtacggtatacattgaggccaccggagagccgccgatccattacggatctctatcggtgctctgcatacattaacgaagccataccggagtactgcccttgtagtcccgttgctcgctccggcagcgcaacggcagaaatttttgagcatgttaaaaagttactaccgtcgcctgccgtcgctaaatttttcgccgatgttatgacgatgttctgatgatgtactactgttcttaccgatgtgataccgttgcgctgccgtactagtaccgatcctcgaaattctcaaaaatgtgtgcctcggtatagcttcggcgacccaattcggctaggtgtta
gi|4 : GGCCTGTCACACACTA-CCGATGTACCTCGCCAGGACTAAAC-------------TAACAACGGCGA-----GAAAATCGG--------CGG---------AGCT---TTGGCGTGAAAGCCGCCCATCCATTACGGGGCACTTCCGGTGCTCTTCCGACATTAACGAAGCCATACCGGAGTACTGTCGTTGTACTGCCGTTGTAGTCCCATTGT-----------TTGCTCCAGCAGCGCAACGGT----------GAACATTT-TTGAGCATGTTCAAACATATGTACCTTCGC-CTGTCGTTGCTAAATTT-TT-CGTCG-----------ATGTTCTAACGATGAACTGACGATGTACTACCGTTCTT-TAGCGATGTGATACCGTTGCGCTGCCGTAC---TAGTACCGATCCCCGAAA-ATCAA-C------A-AA-TTTGTGCTTCGATATTGCTCCGGCGACCCAA--ATCGGATAGGTctgtga
gi|11 : GGCCTGTCACACACTA-CCGATGTACCTCGCCGGGACTAAACCG--GCGAGAAAgt
gi|3 : CCTGTCACACACTA-CCGATGTATTTCGCCGGGACTAAACCGGAGCAAAAAGTTAACAACGGCGA-----GAAAATCGG--------CGG---------AGCT---CCGGCGAGAAAGTCGCCGATTCATTACGGGGCGGTGCCGGTGTTCTAACGACATTAACGATGCAATACCGGAGTACTGCCGTTGTACTGCCGTTCCAGACCCGTTG-----------CTCGCCCTGACAGCGCAACGAC----------GGAAAATTATTGAGCCTGTTCAACAAATTCTACCGTCGC-CGGCCGTTGCTAAATTT-TT-CGCCGATGTTCTGA-----------CGATGTCCTGACGATGTACTACCGTTCTT-TAGCGATGTGTTACCGTTGCGCTACCGTAC---TAATACCGATGCCCGAAA-ATCGC-C------A-AA-TTTGTTCTCTGGTATAGCTCCGGCGACCCAA--ACAGGCTGGGTgccgtcgatccattacggggcgctaccggtgctctatcgacattaacga
gi|7 : TGTCACACACTA-CCGATGTACCTCGCCGGGAATAAAgtg
gi|12 : cTGTCACAAACTA-CCGGTGTACCTCGCCGGGACTAAACCGGAGCA-AAAATT-ACTACGGgtacggtatacattgaggccaccggagagccgccgatccattacggagcgctatcggtgctctgtatacattaacgaagccataccggagtactgccgttgtagtcccgttgctcgctccgacagcgcaacggcagacatgtttgagcatgttaaaaaatttctaccgtcgcctgccgtcgctaaattttttgccgatgatatgacgatgttctgatgatgtactactgttcttaccgatgtgataccgttgcgctgccgtactagtaccgatcctcgaaattctcaaaaatgtgtgcctcggtatagcttcggcgacccaattcggccaggtgt
gi|5 : gtactggtaccgatgtgataTCACA-GCTAGCCGATTTGGGTCGCCGGAGCTATACCAGAGCAGAAAATT
gi|13 : ggcctctcacacactaccgatgtacctcgccgagactaaaccggagcaaaaaattaataacggcgagaaaatcggtggagctccggcgagaaaaccgccgattcactacggggcgctaccggtgctctaccgacattaacgaaatcataccggagtactgccgttgtagtcccgttgctcgctccgacggaaatttttgagcatgttcaaaaatttctaccgtcgcctgccgttactaaatttgtttgccgatgttctgacgatgtcctgacgatgtattaccgttctttggcggtgtgataccgttgcgctgccgtactagtactgatccccgaaaatcgccaTCACAC-CTAGCCGATTTAGGTCGCCGGAGCTATACCGGAGCACAAATTTGGCGA
gi|14 : tactagtaccaatccccaaaaaACGCACTA-ACGATGTACATCGCC-----------GGAGCAAAACATTTACAACGGCGA-----GAAAATCGG--------CGG---------AGCT---CCGGCGAGAA
gi|10 : CTA-CCGATGTAACTCGCCGGGACTAAACCGGAGCAAAAAAATAATAACGGCGA-----GAAAATCGG--------CGG---------AGCT---CCGGTGAGAAAGCCGCCGATCCATTACAGCGCGCTACCGGTGCTCTACCGACATTAACGA--------------ACTGCCGTTGTACTGCCGTTGT--TGTC---------CCATTGCTCGCTCCGGCAGCGCAACGGC----------GGAAATAT-TTGAG-ATGTTC
gi|9 : -CCGATTTGGGTTGCCGGAGCTATACCGGAGCACAAATTT------GGCGATTTTCGGAGATCGG--------
gi|11 : actggtgctctaccgacataaacgaagtcataccggagtactgccgttgtagtcccattgctcgctccggcagcgcaacggcggactttttttagcatgatcaaaaatttctaccgtcgcctgccgttgctaaatttttcgccgatgttctgacgatgtcctgacgatatactaccgttctttagcgatgtgataccgttgcgctgccgtgctagtagtaTCGC--------CGG---------GACTAAACCGGCGAGAAAGCCGTCGATCCATTACGGGGCGCTACCGGTGCTCTATCGACATTAACGAct
gi|8 : ggcctgtcacacactaccgatgtaccGAAAGCTGCCGATCCATTACGGGGCGCTACCGGCGCTCTACCGGCATAAACGAAGCCATACCG---TA--------GTACCGCCGTTGTACTGCCGTTGTAGTCCCGTTGGTCGCTCCGGCAGCGCAACGGC----------GGAATTGT-TTGAGCATGTTCAAAAATTTCTACCGTCGC-CTGCCATTGCTAAATTT-TT-CGCCGATGTTCTGACGA----------------------TGTATTACTGTTCTT-TAGCGTTGTGATACCGTTGCGCTGCCGTAC---TATTACCGATCCCCGAAA-ATCGC-C------A-AA-TCTGTGCTCCGGTATAACCCCGGCGACCC
gi|7 : gtatcacatcggtaccagtacggtacacattgagactaccgGAGAGCCGCCGATCCATTACGGAGCGCTATCGGTGCTCTGTATACATTAACGAAGCCATACCGGAGTAC-----------TGCCGTTGTAGTCCCGTTG-----------CTCGCTCCGACAGCGCAACGGC----------AGACATGT-TTGAGCATGTTAAAAAATTTCTACCGTCGC-CTGCCGTCGCTAAATTT-TT-TGCCGA-----TGATA------TGACGATGTTCTGATGATGTACTACTGTTC-T-TACCGATGTGATACCGTTGCGCTGCCGTAC---TAGTACCGATCCTCGAAA-TTCTCAA------A-AA-TGTGTGCCTCGGTATAGCTTCGGCGACCCAA--TTCGGCCAGGTac
gi|6 : ctgtcacacactaccgatgtacctcgccgggaataaagtacggtatacattgaggccaccgGAGAGCCGCCGATCCATTACGGATCTCTATCGGTGCTCTGCATACATTAACGAAGCCATACCGGAGTACT-----------GCCCTTGTAGTCCCGTTG-----------CTCGCTCCGGCAGCGCAACGGC----------AGAAATTT-TTGAGCATGTTAAAAAGTTACTACCGTCGC-CTGCCGTCGCTAAATTT-TT-CGCCGATGTT---A--------TGACGATGTTCTGATGATGTACTACTGTTC-T-TACCGATGTGATACCGTTGCGCTGCCGTAC---TAGTACCGATCCTCGAAA-TTCTCAA------A-AA-TGTGTGCCTCGGTATAGCTTCGGCGACCCAA--TTCGGCTAGGTgt
gi|9 : ggacctgtcacacactactgatgtacctcgccgggaataaagtacggtatacattgaggccaccgACTGGTGCTCTACCGACATAAACGAAGTCATACCGGAGTAC-----------TGCCGTTGTAGTCCCATTG-----------CTCGCTCCGGCAGCGCAACGGC----------GGACTTTT-TTTAGCATGATCAAAAATTTCTACCGTCGC-CTGCCGTTGCTAAATTT-TT-CGCCGATGTT-----------CTGACGATGTCCTGACGATATACTACCGTTCTT-TAGCGATGTGATACCGTTGCGCTGCCGTGCTAGTAGTACCGATCTCCGAAA-ATCGC-C------A-AA-TTTGTGCTCCGGTATAGCTCCGGCAACCCAA--ATCGGCTgtta
gi|3 : CGGCCG-GCGACGGT----------AGAATTTG-TTGAACAGGCTCAATAATTT--TCCGTCG
gi|5 : cctgtcacacactaccgatgtatttcgccgggactaaaccggagcaaaaagttaacaacggcgagaaaatcggcggagctccggcgagaaagtcgccgattcattacggggcggtgccggtgttctaacgacattaacgatgcaataccggagtactgccgttgtactgccgttccagacccgttgctcgccctgacagcgcaaCGGCAG-GCGACGGT----------AGAAATTT-TTGAACATGCTCAAAAAT---TTCCGTCGttgctaaatttttcgccgatgttctgacgatgtcctgacgatgtactaccgttctttagcgatgtgttaccgttgcgctaccgtactaataccgatgcccgaaaatcgccaaatttgttctctggtatagctccggcgacccaaacaggctgggtgtg
gi|4 : ggcctctcacacactaccgatgtacctcgccgagactaaaccggagcaaaaaattaataacggcgagaaaatcggtggagctccggcgagaaaaccgccgattcactacggggcgctaccggtgctctaccgacattaacgaaatcataccggagtactgccgttgtagtcccgttgctcgctcCGACAG-GCGAAGGT----------ACATATGT-TTGAACATGCTCAAAAATGTTCACCGTTGCGCTGCTGttactaaatttgtttgccgatgttctgacgatgtcctgacgatgtattaccgttctttggcggtgtgataccgttgcgctgccgtactagtactgatccccgaaaatcgccaaattttctgctctggtatagctccggcgacccaaatcggctagctgtga
gi|7 : ggcctgtcacacactaccgatgtacctcgccaggactaaactaacaacggcgagaaaatcggcggagctttggcgtgaaagccgcccatccattacggggcacttccggtgctcttccgacattaacgaagccataccggagtactgtcgttgtactgccgttgtagtcccattgtttgctcCGGCAG-GCGACGGT----------AGAAATTT-TTTAACATGCTCAAACATGTCTGCCGTTGCGCTGTCGttgctaaatttttcgtcgatgttctaacgatgaactgacgatgtactaccgttctttagcgatgtgataccgttgcgctgccgtactagtaccgatccccgaaaatcaacaaatttgtgcttcgatattgctccggcgacccaaatcggataggtgt
gi|6 : ctgtcacacactaccgatgtacctcgccgggaataaagtacggtatacattgaggccaccggagagccgccgatccattacggagcgctatcggtgctctgtatacattaacgaagccataccggagtactgccgttgtagtcccgttgctcgctcCGGCAG-GCGACGGT----------AGTAACTT-TTTAACATGCTCAAAAATTTCTGCCGTTGCGCTGCCGtcgctaaattttttgccgatgatatgacgatgttctgatgatgtactactgttcttaccgatgtgataccgttgcgctgccgtactagtaccgatcctcgaaattctcaaaaatgtgtgcctcggtatagcttcggcgacccaattcggccaggtgt
gi|9 : ggacctgtcacacactactgatgtacctcgccgggaataaagtacggtatacattgaggccaccggagagccgccgatccattacggatctctatcggtgctctgcatacattaacgaagccataccggagtactgcccttgtagtcccgttgctcgctcCGGCAG-GCGACGGT----------AGAAATTT-TTGATCATGCTAAAAAAAGTCCGCCGTTGCGCTGCCGtcgctaaatttttcgccgatgttatgacgatgttctgatgatgtactactgttcttaccgatgtgataccgttgcgctgccgtactagtaccgatcctcgaaattctcaaaaatgtgtgcctcggtatagcttcggcgacccaattcggctaggtgtta
gi|8 : actggtgctctaccgacataaacgaagtcataccggagtactgccgttgtagtcccattgctcgctcGGCAG-GCGACGGT----------AGAAATTT-TTGAACATGCTCAAACAATTCCGCCGTTGCGCTGCCGttgctaaatttttcgccgatgttctgacgatgtcctgacgatatactaccgttctttagcgatgtgataccgttgcgctgccgtgctagtagtaccgatctccgaaaatcgccaaatttgtgctccggtatagctccggcaacccaaatcggct
gi|2 : gtatcacatcggtaccagtacggtacacattgagactaccggaaagctgccgatccattacggggcgctaccggcgctctaccggcataaacgaagccataccgtagtaccgccgttgtactgccgttgtagtcccgttggtcgctcGCAACGGCAGGCGACGGTAGAAAGTT-TTGAACATTCTAAAAAAATTCCACCGTTGCGCTGCCGattgctaaatttttcgccgatgttctgacgatgtattactgttctttagcgttgtgataccgttgcgctgccgtactattaccgatccccgaaaatcgccaaatctgtgctccggtataaccccggcgacccac
gi|2 : aagtgcctgtcacaaactaccggtgtacctcgccgggactaaaccggagcaaaaattactacggtatcacatcggtaccagtacggtacacattgaggtcaccggaaagccgccgatccattacgtgacgttaccggtgctctacgtacaataacgaagccataccggagtactgccgttgtagtcccgttgctcgctcCGGTGACCT--CAATGTG-TACCGTACTGGTACCGATGTGATACCGTtaaattttttcgccgatgttctgacgaagtcctgacgatatactaccgttcttagcgatatgataccgttgcgctgccgtactagtaccgatccccgaaaatcatcaaatttgtgctccagtatcgctccagcgacttaaatcggctagat
gi|2 : aagtgcctgtcacaaactaccggtgtacctcgccgggactaaaccggagcaaaaattactTACCGTAC---TGGTACCGAT----GTGATACCGT-A------GTAA-TTTTTGCTCCGGTTTAGTCCCGGCGAgaaagccgccgatccattacgtgacgttaccggtgctctacgtacaataacgaagccataccggagtactgccgttgtagtcccgttgctcgctccggcagcgcaacggtggaatttttttagaatgttcaaaactttctaccgtcgcctgccgttgctaaattttttcgccgatgttctgacgaagtcctgacgatatactaccgttcttagcgatatgataccgttgcgctgccgtactagtaccgatccccgaaaatcatcaaatttgtgctccagtatcgctccagcgacttaaatcggctagat
gi|12 : aagtgcctgtcacaaactaccggtgtaccGTAC---TGGTACCGAT----GTGATACCGT-A------GTAA-TTTTTGCTCCGGTTTAGTCCCGGCGAcacattgaggtcaccggaaagccgccgatccattacgtgacgttaccggtgctctacgtacaataacgaagccataccggagtactgccgttgtagtcccgttgctcgctccggcagcgcaacggtggaatttttttagaatgttcaaaactttctaccgtcgcctgccgttgctaaattttttcgccgatgttctgacgaagtcctgacgatatactaccgttcttagcgatatgataccgttgcgctgccgtactagtaccgatccccgaaaatcatcaaatttgtgctccagtatcgctccagcgacttaaatcggctagat
gi|13 : TAC---TAGTACCAATCCCCAAAA-ATCGC-C------A-AA-TTTGTGCTCCGGTATAGCTCCGGCGACCTAA--ATCGGCTAGGTggtacaccggtagtttgtgaca
gi|5 : ACCGATTTTC------TCGC-CGTTATTA-AT-TTTTTGCTCCGGTTTAGTCTCGGCGAgtga
gi|3 : ggcctctcacacactaccgatgtaccCCGATTTTC------TCGC-CGTTGTTA-AC-TTTTTGCTCCGGTTTAGTCCCGGCGAggagctccggcgagaaaaccgccgattcactacggggcgctaccggtgctctaccgacattaacgaaatcataccggagtactgccgttgtagtcccgttgctcgctccgacggaaatttttgagcatgttcaaaaatttctaccgtcgcctgccgttactaaatttgtttgccgatgttctgacgatgtcctgacgatgtattaccgttctttggcggtgtgataccgttgcgctgccgtactagtactgatccccgaaaatcgccaaattttctgctctggtatagctccggcgacccaaatcggctagctgtga
gi|10 : cctgtcacacactaccgatgtatt-TTTTTGCTCCGGTTTAGTCCCGGCGAGTTAC--ATCGG-TAGcggagctccggcgagaaagtcgccgattcattacggggcggtgccggtgttctaacgacattaacgatgcaataccggagtactgccgttgtactgccgttccagacccgttgctcgccctgacagcgcaacgacggaaaattattgagcctgttcaacaaattctaccgtcgccggccgttgctaaatttttcgccgatgttctgacgatgtcctgacgatgtactaccgttctttagcgatgtgttaccgttgcgctaccgtactaataccgatgcccgaaaatcgccaaatttgttctctggtatagctccggcgacccaaacaggctgggtgtg
gi|16 : TATGGCTCTGGCGACCCAA--ATTGGCTAGGTaataataacggcgagaaaatcggcggagctccggtgagaaagccgccgatccattacagcgcgctaccggtgctctaccgacattaacgaactgccgttgtactgccgttgttgtcccattgctcgctccggcagcgcaacggcggaaatatttgagatgttc
Alignments
lowQualScore : 111111111 1111111111 5555555555555555 11111111111 4 6666666666666
lowQualScore : 4 0 44 1 6 8 666666666 8888888888 777 4 0000000000000000 99999999999 6 4 6 0 4 4 3333333333333 0 1 666 3 7 3 3
lowQualScore : . . .. . . . ......... .......... ... . ................ ........... . . . . . . ............. . . ... . . . .
lowQualScore : 0 8 00 0 7 9 111111111 3333333333 000 9 4444444444444444 00000000000 9 0 9 0 4 4 3333333333333 9 9 444 6 3 6 6
consensus : AGGGCCTGTCACACACTACCGATGTACCTCGCCGGGACTAAACCGGAGCAAAAAATTAACAACGGCGAGA-AAATCGG--------CGG---------AGCT---CCGGCGAGAAAGCCGCCGATCCATTACGGGGCGCTACCGGTGCTCTACCGACATTAACGAAGCCATACCGGAGTAC------TGT------ACTGCCGTTGTAGTCCCGTTG-----------CTCGCTCCGGCAGCGCAACGGCGG-AAATTTTTGAGCATGTTCAAAAATTTCTACCGTCGC-CTGCCGTTGCTAAATTT-TT-CGCCGATGTT---A-------CTGACGATGTCCTGACGATGTACTACCGTTCTTTAGCGATGTGATACCGTTGCGCTGCCGTAC---TAGTACCGATCCCCGAAA-ATCGC-CA-AA-TTTGTGCTCCGGTATAGCTCCGGCGACCCAAATCGGCTAGGT
Reference ( family-7805 ) : AGGGCCTGTCACACACTACCGATGTACCTCGCCGGGACTAAACCGGAGCAAAAAATTAACAACGGCGAGA-AAATCGG--------CGG---------AGCT---CCGGCGAGAAAGCCGCCGATCCATTACGGGGCGCTACCGGTGCTCTACCGACATTAACGAAGCCATACCGGAGTAC------TGT------ACTGCCGTTGTAGTCCCGTTG-----------CTCGCTCCGGCAGCGCGACGGCGG-AAATTTTTGAGCATGCTCAAAAATTTCTACCGTCGCGCTGCCGTTGCTAAATTT-TT-CGCCGATGTTCTGA-------CTGACGATGTCCTGACGATGTACTACCGTTCTTTAGCGATGTGATACCGTTGCGCTGCCGTAC---TAGTACCGATCCCCGAAA-ATCGC-CA-AA-TTTGTGCTCCGGTATAGCTCCGGCGACCCAAATCGGCTAGGT
gi|1 : AGGGCTTGTCACACACTACTGATGTAGCTCGCCGGGACTAAACCGGAGCAAAAAATTAACAACGGCGAGA-AAATCGG--------CGG---------AGCT---CTGGCGAGAAAGCTGCCGATCCATTACAGGGCGCTACCGGTGCTCTACCAACATTAACAAAGCCATACCGGAGTACTGCCGTTGT------ACTGCCGTTGTACTGCCGTTGTAATATCATTCCTCGCTCCGGCAGCGCAACGGCGG-AAATTTTTGAGCGTGTTCAAAAATTTCTTCCGTCGC-CTGCCGTTGCTAAATTT-TT-CGCCGATGCTCTGACAATGCTCTGACGATGCTCTGACAATGTACTACCGTTCTTTAGTGATGTGATACCGTTGCGCTGCCGTAC---TAGTACCGATCCTCGAAA-ATCGC-CA-AA-TTTGTGCTCCGGTATAGCTCCGGCGACCCTTATCGGCTAGGT
gi|10 : CTACCGATGTAACTCGCCGGGACTAAACCGGAGCAAAAAAATAATAACGGCGAGA-AAATCGG--------CGG---------AGCT---CCGGTGAGAAAGCCGCCGATCCATTACAGCGCGCTACCGGTGCTCTACCGACATTAACGAA-C--TGCCG-----T------TGT------ACTGCCGTTGTTGTCCCATTG-----------CTCGCTCCGGCAGCGCAACGGCGG-AAATATTTGAG-ATGTTCa
gi|11 : GGCCTGTCACACACTACCGATGTACCTCGCCGGGACTAAACCG--GCGAGAAA
gi|11 : TCGC--------CGG---------GACTAAACCGGCGAGAAAGCCGTCGATCCATTACGGGGCGCTACCGGTGCTCTATCGACATTAACGAgccgtcgatccattacggggcgctaccggtgctctatcgacattaacga
gi|12 : ggcctgtcacacactaccgatgtaccGTAC---TGGTACCGAT----GTGATACCGT-AGTAA-TTTTTGCTCCGGTTTAGTCCCGGCGA
gi|12 : TGTCACAAACTACCGGTGTACCTCGCCGGGACTAAACCGGAGC-AAAAATT-ACTACGGggtacaccggtagtttgtgaca
gi|13 : gtactggtaccgatgtgataTAC---TAGTACCAATCCCCAAAA-ATCGC-CA-AA-TTTGTGCTCCGGTATAGCTCCGGCGACCTAAATCGGCTAGGT
gi|14 : ACGCACTAACGATGTACATCGCCGG-----------AGCAAAACATTTACAACGGCGAGA-AAATCGG--------CGG---------AGCT---CCGGCGAGAAgtga
gi|15 : AGGGTCTGTCACCCACTACCGATGTACCTCGCCGGGACTAAANNNNNNNNNNATATT
gi|16 : aTATGGCTCTGGCGACCCAAATTGGCTAGGTtc
gi|2 : AGTGCCTGTCACAAACTACCGGTGTACCTCGCCGGGACTAAACCGGAGCAAAAA-TTA-CTACGGT-ATC-ACATCGGTACCAGTACGGTACACATTGAGGT---C--ACCGGAAAGCCGCCGATCCATTACGTGACGTTACCGGTGCTCTACGTACAATAACGAAGCCATACCGGAGTAC------TG-----------CCGTTGTAGTCCCGTTG-----------CTCGCTCCGGCAGCGCAACGGTGG-AATTTTTTTAGAATGTTCAAAACTTTCTACCGTCGC-CTGCCGTTGCTAAATTT-TTTCGCCGATGTTCTGA-------C----GAAGTCCTGACGATATACTACCGTTCTT-AGCGATATGATACCGTTGCGCTGCCGTAC---TAGTACCGATCCCCGAAA-ATCAT-CA-AA-TTTGTGCTCCAGTATCGCTCCAGCGACTTAAATCGGCTAGATgtgaca
gi|3 : aCCTGTCACACACTACCGATGTATTTCGCCGGGACTAAACCGGAGCAAAAAGTTAACAACGGCGAGA-AAATCGG--------CGG---------AGCT---CCGGCGAGAAAGTCGCCGATTCATTACGGGGCGGTGCCGGTGTTCTAACGACATTAACGATGCAATACCGGAGTACTGCCGTTGT------ACTGCCGTTCCAGACCCGTTG-----------CTCGCCCTGACAGCGCAACGACGGAAAATTATTGAGCCTGTTCAACAAATTCTACCGTCGC-CGGCCGTTGCTAAATTT-TT-CGCCGATGTT-----------CTGACGATGTCCTGACGATGTACTACCGTTCTTTAGCGATGTGTTACCGTTGCGCTACCGTAC---TAATACCGATGCCCGAAA-ATCGC-CA-AA-TTTGTTCTCTGGTATAGCTCCGGCGACCCAAACAGGCTGGGT
gi|4 : GGCCTGTCACACACTACCGATGTACCTCGCCAGGACTAAAC-------------TAACAACGGCGAGA-AAATCGG--------CGG---------AGCT---TTGGCGTGAAAGCCGCCCATCCATTACGGGGCACTTCCGGTGCTCTTCCGACATTAACGAAGCCATACCGGAGTAC------TGTCGTTGTACTGCCGTTGTAGTCCCATTG-----------TTTGCTCCAGCAGCGCAACGGTGA-ACATTTTTGAGCATGTTCAAACATATGTACCTTCGC-CTGTCGTTGCTAAATTT-TT-CGTCGATGTTCTAA-------C----GATGAACTGACGATGTACTACCGTTCTTTAGCGATGTGATACCGTTGCGCTGCCGTAC---TAGTACCGATCCCCGAAA-ATCAA-CA-AA-TTTGTGCTTCGATATTGCTCCGGCGACCCAAATCGGATAGGTgtg
gi|5 : GGCCTCTCACACACTACCGATGTACCTCGCCGAGACTAAACCGGAGCAAAAAATTAATAACGGCGAGA-AAATCGG--------TGG---------AGCT---CCGGCGAGAAAACCGCCGATTCACTACGGGGCGCTACCGGTGCTCTACCGACATTAACGAAATCATACCGGA-----------GT------ACTGCCGTTGTAGTCCCGTTG-----------CTCGCTC-----------CGACGG-AAATTTTTGAGCATGTTCAAAAATTTCTACCGTCGC-CTGCCGTTACTAAATTTGTT-TGCCGATGTT-----------CTGACGATGTCCTGACGATGTATTACCGTTCTTTGGCGGTGTGATACCGTTGCGCTGCCGTAC---TAGTACTGATCCCCGAAA-ATCGC-CA-AATTTTCTGCTCTGGTATAGCTCCGGCGACCCAAATCGGCTAGgt
gi|6 : GGACCTGTCACACACTACTGATGTACCTCG-----------CCGG-GAATAAAGT-----ACGGT---ATACATTGA---------GG----------------CCACCG-GAGAGCCGCCGATCCATTACGGATCTCTATCGGTGCTCTGCATACATTAACGAAGCCATACCGGAGTAC------TG-----------CCCTTGTAGTCCCGTTG-----------CTCGCTCCGGCAGCGCAACGGCAG-AAATTTTTGAGCATGTTAAAAAGTTACTACCGTCGC-CTGCCGTCGCTAAATTT-TT-CGCCGATGTT---A--------TGACGATGTTCTGATGATGTACTACTGTTC-TTACCGATGTGATACCGTTGCGCTGCCGTAC---TAGTACCGATCCTCGAAA-TTCTCAAA-AA-TGTGTGCCTCGGTATAGCTTCGGCGACCCAATTCGGCTAGGTctgtga
gi|7 : CTGTCACACACTACCGATGTACCTCG-----------CCGG-GAATAAAGT-----ACGGT---ATACATTGA---------GG----------------CCACCG-GAGAGCCGCCGATCCATTACGGAGCGCTATCGGTGCTCTGTATACATTAACGAAGCCATACCGGAGTAC-----------------TGCCGTTGTAGTCCCGTTG-----------CTCGCTCCGACAGCGCAACGGCAG-ACATGTTTGAGCATGTTAAAAAATTTCTACCGTCGC-CTGCCGTCGCTAAATTT-TT-TGCCGATGAT---A--------TGACGATGTTCTGATGATGTACTACTGTTC-TTACCGATGTGATACCGTTGCGCTGCCGTAC---TAGTACCGATCCTCGAAA-TTCTCAAA-AA-TGTGTGCCTCGGTATAGCTTCGGCGACCCAATTCGGCCAGGTgtta
gi|8 : GAAAGCTGCCGATCCATTACGGGGCGCTACCGGCGCTCTACCGGCATAAACGAAGCCATACCGTAGTACCGCCGTTGT------ACTGCCGTTGTAGTCCCGTTG-----------GTCGCTCCGGCAGCGCAACGGCGG-AATTGTTTGAGCATGTTCAAAAATTTCTACCGTCGC-CTGCCATTGCTAAATTT-TT-CGCCGATGTT----------------------CTGACGATGTATTACTGTTCTTTAGCGTTGTGATACCGTTGCGCTGCCGTAC---TATTACCGATCCCCGAAA-ATCGC-CA-AA-TCTGTGCTCCGGTATAACCCCGGCGACCCAgt
gi|9 : gtatcacatcggtaccagtacggtacacattgagactaccgACTGGTGCTCTACCGACATAAACGAAGTCATACCGGAGTAC-----------------TGCCGTTGTAGTCCCATTG-----------CTCGCTCCGGCAGCGCAACGGCGG-ACTTTTTTTAGCATGATCAAAAATTTCTACCGTCGC-CTGCCGTTGCTAAATTT-TT-CGCCGATGTT-----------CTGACGATGTCCTGACGATATACTACCGTTCTTTAGCGATGTGATACCGTTGCGCTGCCGTGCTAGTAGTACCGATCTCCGAAA-ATCGC-CA-AA-TTTGTGCTCCGGTATAGCTCCGGCAACCCAAATCGGCTc
Alignments
lowQualScore : 111111111 1111111111 5555555555555555 11111111111 444444444444
lowQualScore : 4 0 44 1 6 8 666666666 8888888888 777 4 5555555555555555 99999999999 4 4 4 999999999999 0 7 666 3 7 3 3
lowQualScore : . . .. . . . ......... .......... ... . ................ ........... . . . ............ . . ... . . . .
lowQualScore : 0 8 00 0 7 9 111111111 3333333333 000 9 3333333333333333 00000000000 0 4 4 888888888888 9 3 444 6 3 6 6
consensus : AGGGCCTGTCACACACTACCGATGTACCTCGCCGGGACTAAACCGGAGCAAAAAATTAACAACGGCGAGA-AAATCGG--------CGG---------AGCT---CCGGCGAGAAAGCCGCCGATCCATTACGGGGCGCTACCGGTGCTCTACCGACATTAACGAAGCCATACCGGAGTAC------TGT------ACTGCCGTTGTAGTCCCGTTG-----------CTCGCTCCGGCAGCGCAACGGCGG-AAATTTTTGAGCATGTTCAAAAATTTCTACCGTCGCCTGCCGTTGCTAAA-TTT-TTCGCCGATGTT-----------CTGACGATGTCCTGACGATGTACTACCGTTCTTTAGCGATGTGATACCGTTGCGCTGCCGTAC---TAGTACCGATCCCCGAAA-ATCGC-CA-AA-TTTGTGCTCCGGTATAGCTCCGGCGACCCAAATCGGCTAGGT
Reference ( family-7805 ) : AGGGCCTGTCACACACTACCGATGTACCTCGCCGGGACTAAACCGGAGCAAAAAATTAACAACGGCGAGA-AAATCGG--------CGG---------AGCT---CCGGCGAGAAAGCCGCCGATCCATTACGGGGCGCTACCGGTGCTCTACCGACATTAACGAAGCCATACCGGAGTAC------TGT------ACTGCCGTTGTAGTCCCGTTG-----------CTCGCTCCGGCAGCGCAACGGCGG-AAATTTTTGAGCATGTTCAAAAATTTCTACCGTCGCCTGCCGTTGCTAAA-TTT-TTCGCCGATGTT---A-------CTGACGATGTCCTGACGATGTACTACCGTTCTTTAGCGATGTGATACCGTTGCGCTGCCGTAC---TAGTACCGATCCCCGAAA-ATCGC-CA-AA-TTTGTGCTCCGGTATAGCTCCGGCGACCCAAATCGGCTAGGT
gi|1 : AGGGCTTGTCACACACTACTGATGTAGCTCGCCGGGACTAAACCGGAGCAAAAAATTAACAACGGCGAGA-AAATCGG--------CGG---------AGCT---CTGGCGAGAAAGCTGCCGATCCATTACAGGGCGCTACCGGTGCTCTACCAACATTAACAAAGCCATACCGGAGTACTGCCGTTGT------ACTGCCGTTGTACTGCCGTTGTAATATCATTCCTCGCTCCGGCAGCGCAACGGCGG-AAATTTTTGAGCGTGTTCAAAAATTTCTTCCGTCGCCTGCCGTTGCTAAA-TTT-TTCGCCGATGCTCTGACAATGCTCTGACGATGCTCTGACAATGTACTACCGTTCTTTAGTGATGTGATACCGTTGCGCTGCCGTAC---TAGTACCGATCCTCGAAA-ATCGC-CA-AA-TTTGTGCTCCGGTATAGCTCCGGCGACCCTTATCGGCTAGGT
gi|10 : CTACCGATGTAACTCGCCGGGACTAAACCGGAGCAAAAAAATAATAACGGCGAGA-AAATCGG--------CGG---------AGCT---CCGGTGAGAAAGCCGCCGATCCATTACAGCGCGCTACCGGTGCTCTACCGACATTAACGAA-C--TGCCG-----T------TGT------ACTGCCGTTGTTGTCCCATTG-----------CTCGCTCCGGCAGCGCAACGGCGG-AAATATTTGAG-ATGTTCa
gi|11 : GGCCTGTCACACACTACCGATGTACCTCGCCGGGACTAAACCG--GCGAGAAA
gi|11 : TCGC--------CGG---------GACTAAACCGGCGAGAAAGCCGTCGATCCATTACGGGGCGCTACCGGTGCTCTATCGACATTAACGAgccgtcgatccattacggggcgctaccggtgctctatcgacattaacga
gi|12 : ggcctgtcacacactaccgatgtaccGTAC---TGGTACCGAT----GTGATACCGT-AGTAA-TTTTTGCTCCGGTTTAGTCCCGGCGA
gi|12 : TGTCACAAACTACCGGTGTACCTCGCCGGGACTAAACCGGAGC-AAAAATT-ACTACGGggtacaccggtagtttgtgaca
gi|13 : gtactggtaccgatgtgataTAC---TAGTACCAATCCCCAAAA-ATCGC-CA-AA-TTTGTGCTCCGGTATAGCTCCGGCGACCTAAATCGGCTAGGT
gi|14 : ACGCACTAACGATGTACATCGCCGG-----------AGCAAAACATTTACAACGGCGAGA-AAATCGG--------CGG---------AGCT---CCGGCGAGAAgtga
gi|15 : AGGGTCTGTCACCCACTACCGATGTACCTCGCCGGGACTAAANNNNNNNNNNATATT
gi|16 : aTATGGCTCTGGCGACCCAAATTGGCTAGGTtc
gi|2 : AGTGCCTGTCACAAACTACCGGTGTACCTCGCCGGGACTAAACCGGAGCAAAAA-TTA-CTACGGT-ATC-ACATCGGTACCAGTACGGTACACATTGAGGT---C--ACCGGAAAGCCGCCGATCCATTACGTGACGTTACCGGTGCTCTACGTACAATAACGAAGCCATACCGGAGTAC-----------------TGCCGTTGTAGTCCCGTTG-----------CTCGCTCCGGCAGCGCAACGGTGG-AATTTTTTTAGAATGTTCAAAACTTTCTACCGTCGCCTGCCGTTGCTAAATTTT-TTCGCCGATGTT-----------CTGACGAAGTCCTGACGATATACTACCGTTC-TTAGCGATATGATACCGTTGCGCTGCCGTAC---TAGTACCGATCCCCGAAA-ATCAT-CA-AA-TTTGTGCTCCAGTATCGCTCCAGCGACTTAAATCGGCTAGATgtgaca
gi|3 : aCCTGTCACACACTACCGATGTATTTCGCCGGGACTAAACCGGAGCAAAAAGTTAACAACGGCGAGA-AAATCGG--------CGG---------AGCT---CCGGCGAGAAAGTCGCCGATTCATTACGGGGCGGTGCCGGTGTTCTAACGACATTAACGATGCAATACCGGAGTACTGCCGTTGT------ACTGCCGTTCCAGACCCGTTG-----------CTCGCCCTGACAGCGCAACGACGGAAAATTATTGAGCCTGTTCAACAAATTCTACCGTCGCCGGCCGTTGCTAAA-TTT-TTCGCCGATGTT-----------CTGACGATGTCCTGACGATGTACTACCGTTCTTTAGCGATGTGTTACCGTTGCGCTACCGTAC---TAATACCGATGCCCGAAA-ATCGC-CA-AA-TTTGTTCTCTGGTATAGCTCCGGCGACCCAAACAGGCTGGGT
gi|4 : GGCCTGTCACACACTACCGATGTACCTCGCCAGGACTAAAC-------------TAACAACGGCGAGA-AAATCGG--------CGG---------AGCT---TTGGCGTGAAAGCCGCCCATCCATTACGGGGCACTTCCGGTGCTCTTCCGACATTAACGAAGCCATACCGGAGTAC------TGTCGTTGTACTGCCGTTGTAGTCCCATTG-----------TTTGCTCCAGCAGCGCAACGGTGA-ACATTTTTGAGCATGTTCAAACATATGTACCTTCGCCTGTCGTTGCTAAA-TTT-TTCGTCGATGTT-----------CTAACGATGAACTGACGATGTACTACCGTTCTTTAGCGATGTGATACCGTTGCGCTGCCGTAC---TAGTACCGATCCCCGAAA-ATCAA-CA-AA-TTTGTGCTTCGATATTGCTCCGGCGACCCAAATCGGATAGGTgtg
gi|5 : GGCCTCTCACACACTACCGATGTACCTCGCCGAGACTAAACCGGAGCAAAAAATTAATAACGGCGAGA-AAATCGG--------TGG---------AGCT---CCGGCGAGAAAACCGCCGATTCACTACGGGGCGCTACCGGTGCTCTACCGACATTAACGAAATCATACCGGA-----------GT------ACTGCCGTTGTAGTCCCGTTG-----------CTCGCTC-----------CGACGG-AAATTTTTGAGCATGTTCAAAAATTTCTACCGTCGCCTGCCGTTACTAAA-TTTGTTTGCCGATGTT-----------CTGACGATGTCCTGACGATGTATTACCGTTCTTTGGCGGTGTGATACCGTTGCGCTGCCGTAC---TAGTACTGATCCCCGAAA-ATCGC-CA-AATTTTCTGCTCTGGTATAGCTCCGGCGACCCAAATCGGCTAGgt
gi|6 : GGACCTGTCACACACTACTGATGTACCTCG-----------CCGG-GAATAAAGT-----ACGGT---ATACATTGA---------GG----------------CCACCG-GAGAGCCGCCGATCCATTACGGATCTCTATCGGTGCTCTGCATACATTAACGAAGCCATACCGGAGTAC------TG-----------CCCTTGTAGTCCCGTTG-----------CTCGCTCCGGCAGCGCAACGGCAG-AAATTTTTGAGCATGTTAAAAAGTTACTACCGTCGCCTGCCGTCGCTAAA-TTT-TTCGCCGATGTT---A--------TGACGATGTTCTGATGATGTACTACTGTTC-TTACCGATGTGATACCGTTGCGCTGCCGTAC---TAGTACCGATCCTCGAAA-TTCTCAAA-AA-TGTGTGCCTCGGTATAGCTTCGGCGACCCAATTCGGCTAGGTctgtga
gi|7 : CTGTCACACACTACCGATGTACCTCG-----------CCGG-GAATAAAGT-----ACGGT---ATACATTGA---------GG----------------CCACCG-GAGAGCCGCCGATCCATTACGGAGCGCTATCGGTGCTCTGTATACATTAACGAAGCCATACCGGAGTAC-----------------TGCCGTTGTAGTCCCGTTG-----------CTCGCTCCGACAGCGCAACGGCAG-ACATGTTTGAGCATGTTAAAAAATTTCTACCGTCGCCTGCCGTCGCTAAA-TTT-TTTGCCGATGAT---A--------TGACGATGTTCTGATGATGTACTACTGTTC-TTACCGATGTGATACCGTTGCGCTGCCGTAC---TAGTACCGATCCTCGAAA-TTCTCAAA-AA-TGTGTGCCTCGGTATAGCTTCGGCGACCCAATTCGGCCAGGTgtta
gi|8 : GAAAGCTGCCGATCCATTACGGGGCGCTACCGGCGCTCTACCGGCATAAACGAAGCCATACCGTAGTACCGCCGTTGT------ACTGCCGTTGTAGTCCCGTTG-----------GTCGCTCCGGCAGCGCAACGGCGG-AATTGTTTGAGCATGTTCAAAAATTTCTACCGTCGCCTGCCATTGCTAAA-TTT-TTCGCCGATGTT----------------------CTGACGATGTATTACTGTTCTTTAGCGTTGTGATACCGTTGCGCTGCCGTAC---TATTACCGATCCCCGAAA-ATCGC-CA-AA-TCTGTGCTCCGGTATAACCCCGGCGACCCAgt
gi|9 : gtatcacatcggtaccagtacggtacacattgagactaccgACTGGTGCTCTACCGACATAAACGAAGTCATACCGGAGTAC-----------------TGCCGTTGTAGTCCCATTG-----------CTCGCTCCGGCAGCGCAACGGCGG-ACTTTTTTTAGCATGATCAAAAATTTCTACCGTCGCCTGCCGTTGCTAAA-TTT-TTCGCCGATGTT-----------CTGACGATGTCCTGACGATATACTACCGTTCTTTAGCGATGTGATACCGTTGCGCTGCCGTGCTAGTAGTACCGATCTCCGAAA-ATCGC-CA-AA-TTTGTGCTCCGGTATAGCTCCGGCAACCCAAATCGGCTc
Alignments
lowQualScore : 111111111 1111111111 5555555555555555555555 11111111111 222222222222
lowQualScore : 4 0 44 1 6 8 666666666 8888888888 777 4 5555555555555555555555 99999999999 4 4 4 222222222222 0 7 666 3 7 3 3
lowQualScore : . . .. . . . ......... .......... ... . ...................... ........... . . . ............ . . ... . . . .
lowQualScore : 0 8 00 0 7 9 111111111 3333333333 000 9 3333333333333333333333 00000000000 0 4 4 222222222222 9 3 444 6 3 6 6
consensus : AGGGCCTGTCACACACTACCGATGTACCTCGCCGGGACTAAACCGGAGCAAAAAATTAACAACGGCGAGA-AAATCGG--------CGG---------AGCT---CCGGCGAGAAAGCCGCCGATCCATTACGGGGCGCTACCGGTGCTCTACCGACATTAACGAAGCCATACCGGAGTAC------TG------T------ACTGCCGTTGTAGTCCCGTTG-----------CTCGCTCCGGCAGCGCAACGGCGGAAATTT-TTGAGCATGTTCAAAAATTTCTACCGTCGCCTGCCGTTGCTAAA-TTT-TTCGCCGATGTT-----------CTGACGATGTCCTGACGATGTACTACCGTTCTTTAGCGATGTGATACCGTTGCGCTGCCGTAC---TAGTACCGATCCCCGAAA-ATCGC-CA-AA-TTTGTGCTCCGGTATAGCTCCGGCGACCCAAATCGGCTAGGT
Reference ( family-7805 ) : AGGGCCTGTCACACACTACCGATGTACCTCGCCGGGACTAAACCGGAGCAAAAAATTAACAACGGCGAGA-AAATCGG--------CGG---------AGCT---CCGGCGAGAAAGCCGCCGATCCATTACGGGGCGCTACCGGTGCTCTACCGACATTAACGAAGCCATACCGGAGTAC------TG------T------ACTGCCGTTGTAGTCCCGTTG-----------CTCGCTCCGGCAGCGCAACGGCGGAAATTT-TTGAGCATGTTCAAAAATTTCTACCGTCGCCTGCCGTTGCTAAA-TTT-TTCGCCGATGTT-----------CTGACGATGTCCTGACGATGTACTACCGTTCTTTAGCGATGTGATACCGTTGCGCTGCCGTAC---TAGTACCGATCCCCGAAA-ATCGC-CA-AA-TTTGTGCTCCGGTATAGCTCCGGCGACCCAAATCGGCTAGGT
gi|1 : AGGGCTTGTCACACACTACTGATGTAGCTCGCCGGGACTAAACCGGAGCAAAAAATTAACAACGGCGAGA-AAATCGG--------CGG---------AGCT---CTGGCGAGAAAGCTGCCGATCCATTACAGGGCGCTACCGGTGCTCTACCAACATTAACAAAGCCATACCGGAGTACTGCCGTTG------T------ACTGCCGTTGTACTGCCGTTGTAATATCATTCCTCGCTCCGGCAGCGCAACGGCGGAAATTT-TTGAGCGTGTTCAAAAATTTCTTCCGTCGCCTGCCGTTGCTAAA-TTT-TTCGCCGATGCTCTGACAATGCTCTGACGATGCTCTGACAATGTACTACCGTTCTTTAGTGATGTGATACCGTTGCGCTGCCGTAC---TAGTACCGATCCTCGAAA-ATCGC-CA-AA-TTTGTGCTCCGGTATAGCTCCGGCGACCCTTATCGGCTAGGT
gi|10 : CTACCGATGTAACTCGCCGGGACTAAACCGGAGCAAAAAAATAATAACGGCGAGA-AAATCGG--------CGG---------AGCT---CCGGTGAGAAAGCCGCCGATCCATTACAGCGCGCTACCGGTGCTCTACCGACATTAACGAA-C--TGCCG-----T------TG------T------ACTGCCGTTGTTGTCCCATTG-----------CTCGCTCCGGCAGCGCAACGGCGGAAATAT-TTGAG-ATGTTCa
gi|11 : GGCCTGTCACACACTACCGATGTACCTCGCCGGGACTAAACCG--GCGAGAAA
gi|11 : TCGC--------CGG---------GACTAAACCGGCGAGAAAGCCGTCGATCCATTACGGGGCGCTACCGGTGCTCTATCGACATTAACGAgccgtcgatccattacggggcgctaccggtgctctatcgacattaacga
gi|12 : ggcctgtcacacactaccgatgtaccGTAC---TGGTACCGAT----GTGATACCGT-AGTAA-TTTTTGCTCCGGTTTAGTCCCGGCGA
gi|12 : TGTCACAAACTACCGGTGTACCTCGCCGGGACTAAACCGGAGC-AAAAATT-ACTACGGggtacaccggtagtttgtgaca
gi|13 : gtactggtaccgatgtgataTAC---TAGTACCAATCCCCAAAA-ATCGC-CA-AA-TTTGTGCTCCGGTATAGCTCCGGCGACCTAAATCGGCTAGGT
gi|14 : ACGCACTAACGATGTACATCGCCGG-----------AGCAAAACATTTACAACGGCGAGA-AAATCGG--------CGG---------AGCT---CCGGCGAGAAgtga
gi|15 : AGGGTCTGTCACCCACTACCGATGTACCTCGCCGGGACTAAANNNNNNNNNNATATT
gi|16 : aTATGGCTCTGGCGACCCAAATTGGCTAGGTtc
gi|2 : AGTGCCTGTCACAAACTACCGGTGTACCTCGCCGGGACTAAACCGGAGCAAAAA-TTA-CTACGGT-ATC-ACATCGGTACCAGTACGGTACACATTGAGGT---C--ACCGGAAAGCCGCCGATCCATTACGTGACGTTACCGGTGCTCTACGTACAATAACGAAGCCATACCGGAGTAC-----------------------TGCCGTTGTAGTCCCGTTG-----------CTCGCTCCGGCAGCGCAACGGTGGAATTTT-TTTAGAATGTTCAAAACTTTCTACCGTCGCCTGCCGTTGCTAAATTTT-TTCGCCGATGTT-----------CTGACGAAGTCCTGACGATATACTACCGTTC-TTAGCGATATGATACCGTTGCGCTGCCGTAC---TAGTACCGATCCCCGAAA-ATCAT-CA-AA-TTTGTGCTCCAGTATCGCTCCAGCGACTTAAATCGGCTAGATgtgaca
gi|3 : aCCTGTCACACACTACCGATGTATTTCGCCGGGACTAAACCGGAGCAAAAAGTTAACAACGGCGAGA-AAATCGG--------CGG---------AGCT---CCGGCGAGAAAGTCGCCGATTCATTACGGGGCGGTGCCGGTGTTCTAACGACATTAACGATGCAATACCGGAGTAC------TGCCGTTGT------ACTGCCGTTCCAGACCCGTTG-----------CTCGCCCTGACAGCGCAACGACGGAAAATTATTGAGCCTGTTCAACAAATTCTACCGTCGCCGGCCGTTGCTAAA-TTT-TTCGCCGATGTT-----------CTGACGATGTCCTGACGATGTACTACCGTTCTTTAGCGATGTGTTACCGTTGCGCTACCGTAC---TAATACCGATGCCCGAAA-ATCGC-CA-AA-TTTGTTCTCTGGTATAGCTCCGGCGACCCAAACAGGCTGGGT
gi|4 : GGCCTGTCACACACTACCGATGTACCTCGCCAGGACTAAAC-------------TAACAACGGCGAGA-AAATCGG--------CGG---------AGCT---TTGGCGTGAAAGCCGCCCATCCATTACGGGGCACTTCCGGTGCTCTTCCGACATTAACGAAGCCATACCGGAGTAC------TG------TCGTTGTACTGCCGTTGTAGTCCCATTG-----------TTTGCTCCAGCAGCGCAACGGTGAACATTT-TTGAGCATGTTCAAACATATGTACCTTCGCCTGTCGTTGCTAAA-TTT-TTCGTCGATGTT-----------CTAACGATGAACTGACGATGTACTACCGTTCTTTAGCGATGTGATACCGTTGCGCTGCCGTAC---TAGTACCGATCCCCGAAA-ATCAA-CA-AA-TTTGTGCTTCGATATTGCTCCGGCGACCCAAATCGGATAGGTgtg
gi|5 : GGCCTCTCACACACTACCGATGTACCTCGCCGAGACTAAACCGGAGCAAAAAATTAATAACGGCGAGA-AAATCGG--------TGG---------AGCT---CCGGCGAGAAAACCGCCGATTCACTACGGGGCGCTACCGGTGCTCTACCGACATTAACGAAATCATACCGGA-----------G------T------ACTGCCGTTGTAGTCCCGTTG-----------CTCGCTC-----------CGACGGAAATTT-TTGAGCATGTTCAAAAATTTCTACCGTCGCCTGCCGTTACTAAA-TTTGTTTGCCGATGTT-----------CTGACGATGTCCTGACGATGTATTACCGTTCTTTGGCGGTGTGATACCGTTGCGCTGCCGTAC---TAGTACTGATCCCCGAAA-ATCGC-CA-AATTTTCTGCTCTGGTATAGCTCCGGCGACCCAAATCGGCTAGgt
gi|6 : GGACCTGTCACACACTACTGATGTACCTCG-----------CCGG-GAATAAAGT-----ACGGT---ATACATTGA---------GG----------------CCACCG-GAGAGCCGCCGATCCATTACGGATCTCTATCGGTGCTCTGCATACATTAACGAAGCCATACCGGAGTAC------TG-----------------CCCTTGTAGTCCCGTTG-----------CTCGCTCCGGCAGCGCAACGGCAGAAATTT-TTGAGCATGTTAAAAAGTTACTACCGTCGCCTGCCGTCGCTAAA-TTT-TTCGCCGATGTT-----------ATGACGATGTTCTGATGATGTACTACTGTTC-TTACCGATGTGATACCGTTGCGCTGCCGTAC---TAGTACCGATCCTCGAAA-TTCTCAAA-AA-TGTGTGCCTCGGTATAGCTTCGGCGACCCAATTCGGCTAGGTctgtga
gi|7 : CTGTCACACACTACCGATGTACCTCG-----------CCGG-GAATAAAGT-----ACGGT---ATACATTGA---------GG----------------CCACCG-GAGAGCCGCCGATCCATTACGGAGCGCTATCGGTGCTCTGTATACATTAACGAAGCCATACCGGAGTAC-----------------------TGCCGTTGTAGTCCCGTTG-----------CTCGCTCCGACAGCGCAACGGCAGACATGT-TTGAGCATGTTAAAAAATTTCTACCGTCGCCTGCCGTCGCTAAA-TTT-TTTGCCGATGAT-----------ATGACGATGTTCTGATGATGTACTACTGTTC-TTACCGATGTGATACCGTTGCGCTGCCGTAC---TAGTACCGATCCTCGAAA-TTCTCAAA-AA-TGTGTGCCTCGGTATAGCTTCGGCGACCCAATTCGGCCAGGTgtta
gi|8 : GAAAGCTGCCGATCCATTACGGGGCGCTACCGGCGCTCTACCGGCATAAACGAAGCCATACCGTAGTACCGCCGTTG------T------ACTGCCGTTGTAGTCCCGTTG-----------GTCGCTCCGGCAGCGCAACGGCGGAATTGT-TTGAGCATGTTCAAAAATTTCTACCGTCGCCTGCCATTGCTAAA-TTT-TTCGCCGATGTT----------------------CTGACGATGTATTACTGTTCTTTAGCGTTGTGATACCGTTGCGCTGCCGTAC---TATTACCGATCCCCGAAA-ATCGC-CA-AA-TCTGTGCTCCGGTATAACCCCGGCGACCCAgt
gi|9 : gtatcacatcggtaccagtacggtacacattgagactaccgACTGGTGCTCTACCGACATAAACGAAGTCATACCGGAGTAC-----------------------TGCCGTTGTAGTCCCATTG-----------CTCGCTCCGGCAGCGCAACGGCGGACTTTT-TTTAGCATGATCAAAAATTTCTACCGTCGCCTGCCGTTGCTAAA-TTT-TTCGCCGATGTT-----------CTGACGATGTCCTGACGATATACTACCGTTCTTTAGCGATGTGATACCGTTGCGCTGCCGTGCTAGTAGTACCGATCTCCGAAA-ATCGC-CA-AA-TTTGTGCTCCGGTATAGCTCCGGCAACCCAAATCGGCTc
Alignments
lowQualScore : 111111111 1111111111 5555555555555555555555 11111111111 222222222222
lowQualScore : 4 0 44 1 6 8 666666666 8888888888 777 4 5555555555555555555555 99999999999 4 4 4 222222222222 0 7 666 3 7 3 3
lowQualScore : . . .. . . . ......... .......... ... . ...................... ........... . . . ............ . . ... . . . .
lowQualScore : 0 8 00 0 7 9 111111111 3333333333 000 9 3333333333333333333333 00000000000 0 4 4 222222222222 9 3 444 6 3 6 6
consensus : AGGGCCTGTCACACACTACCGATGTACCTCGCCGGGACTAAACCGGAGCAAAAAATTAACAACGGCGAGA-AAATCGG--------CGG---------AGCT---CCGGCGAGAAAGCCGCCGATCCATTACGGGGCGCTACCGGTGCTCTACCGACATTAACGAAGCCATACCGGAGTAC------TG------T------ACTGCCGTTGTAGTCCCGTTG-----------CTCGCTCCGGCAGCGCAACGGCGGAAATTT-TTGAGCATGTTCAAAAATTTCTACCGTCGCCTGCCGTTGCTAAA-TTT-TTCGCCGATGTT-----------CTGACGATGTCCTGACGATGTACTACCGTTCTTTAGCGATGTGATACCGTTGCGCTGCCGTAC---TAGTACCGATCCCCGAAA-ATCGC-CA-AA-TTTGTGCTCCGGTATAGCTCCGGCGACCCAAATCGGCTAGGT
Reference ( family-7805 ) : AGGGCCTGTCACACACTACCGATGTACCTCGCCGGGACTAAACCGGAGCAAAAAATTAACAACGGCGAGA-AAATCGG--------CGG---------AGCT---CCGGCGAGAAAGCCGCCGATCCATTACGGGGCGCTACCGGTGCTCTACCGACATTAACGAAGCCATACCGGAGTAC------TG------T------ACTGCCGTTGTAGTCCCGTTG-----------CTCGCTCCGGCAGCGCAACGGCGGAAATTT-TTGAGCATGTTCAAAAATTTCTACCGTCGCCTGCCGTTGCTAAA-TTT-TTCGCCGATGTT-----------CTGACGATGTCCTGACGATGTACTACCGTTCTTTAGCGATGTGATACCGTTGCGCTGCCGTAC---TAGTACCGATCCCCGAAA-ATCGC-CA-AA-TTTGTGCTCCGGTATAGCTCCGGCGACCCAAATCGGCTAGGT
gi|1 : AGGGCTTGTCACACACTACTGATGTAGCTCGCCGGGACTAAACCGGAGCAAAAAATTAACAACGGCGAGA-AAATCGG--------CGG---------AGCT---CTGGCGAGAAAGCTGCCGATCCATTACAGGGCGCTACCGGTGCTCTACCAACATTAACAAAGCCATACCGGAGTACTGCCGTTG------T------ACTGCCGTTGTACTGCCGTTGTAATATCATTCCTCGCTCCGGCAGCGCAACGGCGGAAATTT-TTGAGCGTGTTCAAAAATTTCTTCCGTCGCCTGCCGTTGCTAAA-TTT-TTCGCCGATGCTCTGACAATGCTCTGACGATGCTCTGACAATGTACTACCGTTCTTTAGTGATGTGATACCGTTGCGCTGCCGTAC---TAGTACCGATCCTCGAAA-ATCGC-CA-AA-TTTGTGCTCCGGTATAGCTCCGGCGACCCTTATCGGCTAGGT
gi|10 : CTACCGATGTAACTCGCCGGGACTAAACCGGAGCAAAAAAATAATAACGGCGAGA-AAATCGG--------CGG---------AGCT---CCGGTGAGAAAGCCGCCGATCCATTACAGCGCGCTACCGGTGCTCTACCGACATTAACGAA-C--TGCCG-----T------TG------T------ACTGCCGTTGTTGTCCCATTG-----------CTCGCTCCGGCAGCGCAACGGCGGAAATAT-TTGAG-ATGTTCa
gi|11 : GGCCTGTCACACACTACCGATGTACCTCGCCGGGACTAAACCG--GCGAGAAA
gi|11 : TCGC--------CGG---------GACTAAACCGGCGAGAAAGCCGTCGATCCATTACGGGGCGCTACCGGTGCTCTATCGACATTAACGAgccgtcgatccattacggggcgctaccggtgctctatcgacattaacga
gi|12 : ggcctgtcacacactaccgatgtaccGTAC---TGGTACCGAT----GTGATACCGT-AGTAA-TTTTTGCTCCGGTTTAGTCCCGGCGA
gi|12 : TGTCACAAACTACCGGTGTACCTCGCCGGGACTAAACCGGAGC-AAAAATT-ACTACGGggtacaccggtagtttgtgaca
gi|13 : gtactggtaccgatgtgataTAC---TAGTACCAATCCCCAAAA-ATCGC-CA-AA-TTTGTGCTCCGGTATAGCTCCGGCGACCTAAATCGGCTAGGT
gi|14 : ACGCACTAACGATGTACATCGCCGG-----------AGCAAAACATTTACAACGGCGAGA-AAATCGG--------CGG---------AGCT---CCGGCGAGAAgtga
gi|15 : AGGGTCTGTCACCCACTACCGATGTACCTCGCCGGGACTAAANNNNNNNNNNATATT
gi|16 : aTATGGCTCTGGCGACCCAAATTGGCTAGGTtc
gi|2 : AGTGCCTGTCACAAACTACCGGTGTACCTCGCCGGGACTAAACCGGAGCAAAAA-TTA-CTACGGT-ATC-ACATCGGTACCAGTACGGTACACATTGAGGT---C--ACCGGAAAGCCGCCGATCCATTACGTGACGTTACCGGTGCTCTACGTACAATAACGAAGCCATACCGGAGTAC-----------------------TGCCGTTGTAGTCCCGTTG-----------CTCGCTCCGGCAGCGCAACGGTGGAATTTT-TTTAGAATGTTCAAAACTTTCTACCGTCGCCTGCCGTTGCTAAATTTT-TTCGCCGATGTT-----------CTGACGAAGTCCTGACGATATACTACCGTTC-TTAGCGATATGATACCGTTGCGCTGCCGTAC---TAGTACCGATCCCCGAAA-ATCAT-CA-AA-TTTGTGCTCCAGTATCGCTCCAGCGACTTAAATCGGCTAGATgtgaca
gi|3 : aCCTGTCACACACTACCGATGTATTTCGCCGGGACTAAACCGGAGCAAAAAGTTAACAACGGCGAGA-AAATCGG--------CGG---------AGCT---CCGGCGAGAAAGTCGCCGATTCATTACGGGGCGGTGCCGGTGTTCTAACGACATTAACGATGCAATACCGGAGTAC------TGCCGTTGT------ACTGCCGTTCCAGACCCGTTG-----------CTCGCCCTGACAGCGCAACGACGGAAAATTATTGAGCCTGTTCAACAAATTCTACCGTCGCCGGCCGTTGCTAAA-TTT-TTCGCCGATGTT-----------CTGACGATGTCCTGACGATGTACTACCGTTCTTTAGCGATGTGTTACCGTTGCGCTACCGTAC---TAATACCGATGCCCGAAA-ATCGC-CA-AA-TTTGTTCTCTGGTATAGCTCCGGCGACCCAAACAGGCTGGGT
gi|4 : GGCCTGTCACACACTACCGATGTACCTCGCCAGGACTAAAC-------------TAACAACGGCGAGA-AAATCGG--------CGG---------AGCT---TTGGCGTGAAAGCCGCCCATCCATTACGGGGCACTTCCGGTGCTCTTCCGACATTAACGAAGCCATACCGGAGTAC------TG------TCGTTGTACTGCCGTTGTAGTCCCATTG-----------TTTGCTCCAGCAGCGCAACGGTGAACATTT-TTGAGCATGTTCAAACATATGTACCTTCGCCTGTCGTTGCTAAA-TTT-TTCGTCGATGTT-----------CTAACGATGAACTGACGATGTACTACCGTTCTTTAGCGATGTGATACCGTTGCGCTGCCGTAC---TAGTACCGATCCCCGAAA-ATCAA-CA-AA-TTTGTGCTTCGATATTGCTCCGGCGACCCAAATCGGATAGGTgtg
gi|5 : GGCCTCTCACACACTACCGATGTACCTCGCCGAGACTAAACCGGAGCAAAAAATTAATAACGGCGAGA-AAATCGG--------TGG---------AGCT---CCGGCGAGAAAACCGCCGATTCACTACGGGGCGCTACCGGTGCTCTACCGACATTAACGAAATCATACCGGA-----------G------T------ACTGCCGTTGTAGTCCCGTTG-----------CTCGCTC-----------CGACGGAAATTT-TTGAGCATGTTCAAAAATTTCTACCGTCGCCTGCCGTTACTAAA-TTTGTTTGCCGATGTT-----------CTGACGATGTCCTGACGATGTATTACCGTTCTTTGGCGGTGTGATACCGTTGCGCTGCCGTAC---TAGTACTGATCCCCGAAA-ATCGC-CA-AATTTTCTGCTCTGGTATAGCTCCGGCGACCCAAATCGGCTAGgt
gi|6 : GGACCTGTCACACACTACTGATGTACCTCG-----------CCGG-GAATAAAGT-----ACGGT---ATACATTGA---------GG----------------CCACCG-GAGAGCCGCCGATCCATTACGGATCTCTATCGGTGCTCTGCATACATTAACGAAGCCATACCGGAGTAC------TG-----------------CCCTTGTAGTCCCGTTG-----------CTCGCTCCGGCAGCGCAACGGCAGAAATTT-TTGAGCATGTTAAAAAGTTACTACCGTCGCCTGCCGTCGCTAAA-TTT-TTCGCCGATGTT-----------ATGACGATGTTCTGATGATGTACTACTGTTC-TTACCGATGTGATACCGTTGCGCTGCCGTAC---TAGTACCGATCCTCGAAA-TTCTCAAA-AA-TGTGTGCCTCGGTATAGCTTCGGCGACCCAATTCGGCTAGGTctgtga
gi|7 : CTGTCACACACTACCGATGTACCTCG-----------CCGG-GAATAAAGT-----ACGGT---ATACATTGA---------GG----------------CCACCG-GAGAGCCGCCGATCCATTACGGAGCGCTATCGGTGCTCTGTATACATTAACGAAGCCATACCGGAGTAC-----------------------TGCCGTTGTAGTCCCGTTG-----------CTCGCTCCGACAGCGCAACGGCAGACATGT-TTGAGCATGTTAAAAAATTTCTACCGTCGCCTGCCGTCGCTAAA-TTT-TTTGCCGATGAT-----------ATGACGATGTTCTGATGATGTACTACTGTTC-TTACCGATGTGATACCGTTGCGCTGCCGTAC---TAGTACCGATCCTCGAAA-TTCTCAAA-AA-TGTGTGCCTCGGTATAGCTTCGGCGACCCAATTCGGCCAGGTgtta
gi|8 : GAAAGCTGCCGATCCATTACGGGGCGCTACCGGCGCTCTACCGGCATAAACGAAGCCATACCGTAGTACCGCCGTTG------T------ACTGCCGTTGTAGTCCCGTTG-----------GTCGCTCCGGCAGCGCAACGGCGGAATTGT-TTGAGCATGTTCAAAAATTTCTACCGTCGCCTGCCATTGCTAAA-TTT-TTCGCCGATGTT----------------------CTGACGATGTATTACTGTTCTTTAGCGTTGTGATACCGTTGCGCTGCCGTAC---TATTACCGATCCCCGAAA-ATCGC-CA-AA-TCTGTGCTCCGGTATAACCCCGGCGACCCAgt
gi|9 : gtatcacatcggtaccagtacggtacacattgagactaccgACTGGTGCTCTACCGACATAAACGAAGTCATACCGGAGTAC-----------------------TGCCGTTGTAGTCCCATTG-----------CTCGCTCCGGCAGCGCAACGGCGGACTTTT-TTTAGCATGATCAAAAATTTCTACCGTCGCCTGCCGTTGCTAAA-TTT-TTCGCCGATGTT-----------CTGACGATGTCCTGACGATATACTACCGTTCTTTAGCGATGTGATACCGTTGCGCTGCCGTGCTAGTAGTACCGATCTCCGAAA-ATCGC-CA-AA-TTTGTGCTCCGGTATAGCTCCGGCAACCCAAATCGGCTc
blockSeqs : A AA A G T TACCAGTAC TACACATTGA AAA A TGCCGTTGTA . A T G C T TAG T A T T
blockSeqs : A TA T G T C A . A TGTCGTTGTA . . . . C T . . A . .
blockSeqs : A AA A G . C G . A CGCCGTTGTA . . . . C T . . . . .
blockSeqs : N AA T G . C A . G TGTA . . . . C T . . . . .
blockSeqs : A AA A G . C A . A GTA . . . . A T . . . . .
blockSeqs : A A A . . C A . T TG . . . . A . . . . . .
blockSeqs : A A A . . T A . A . . . . . C . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . . .
blockSeqs : .
blockSeqCons : *********** C***********
originalCons : AGGGCCTGTCACACACTACCGATGTACCTCGCCGGGACTAAACCGGAGCAAAAAATTAACAACGGCGAGA-AAATCGG--------CGG---------AGCT---CCGGCGAGAAAGCCGCCGATCCATTACGGGGCGCTACCGGTGCTCTACCGACATTAACGAAGCCATACCGGAGTAC------TG------T------ACTGCCGTTGTAGTCCCGTTG-----------CTCGCTCCGGCAGCGCAACGGCGGAAATTT-TTGAGCATGTTCAAAAATTTCTACCGTCGCCTGCCGTTGCTAAA-TTT-TTCGCCGATGTT-----------CTGACGATGTCCTGACGATGTACTACCGTTCTTTAGCGATGTGATACCGTTGCGCTGCCGTAC---TAGTACCGATCCCCGAAA-ATCGC-CA-AA-TTTGTGCTCCGGTATAGCTCCGGCGACCCAAATCGGCTAGGT
finalCons : AGGGCCTGTCACACACTACCGATGTACCTCGCCGGGACTAAACCGGAGCAAAAAATTAACAACGGCGAGA-AAATCGG--------CGG---------AGCT---CCGGCGAGAAAGCCGCCGATCCATTACGGGGCGCTACCGGTGCTCTACCGACATTAACGAAGCCATACCGGAGTAC------TG------T------ACTGCCGTTGTAGTCCCGTTG-----------CTCGCTCCGGCAGCGCAACGGCGGAAATTT-TTGAGCATGTTCAAAAATTTCTACCGTCGCCTGCCGTTGCTAAA-TTT-TTCGCCGATGTTC-----------TGACGATGTCCTGACGATGTACTACCGTTCTTTAGCGATGTGATACCGTTGCGCTGCCGTAC---TAGTACCGATCCCCGAAA-ATCGC-CA-AA-TTTGTGCTCCGGTATAGCTCCGGCGACCCAAATCGGCTAGGT
Alignments
lowQualScore : 111111111 1111111111 5555555555555555555555 11111111111 222222222222
lowQualScore : 4 0 44 1 6 8 666666666 8888888888 777 4 5555555555555555555555 99999999999 4 4 4 222222222222 0 7 666 3 7 3 3
lowQualScore : . . .. . . . ......... .......... ... . ...................... ........... . . . ............ . . ... . . . .
lowQualScore : 0 8 00 0 7 9 111111111 3333333333 000 9 3333333333333333333333 00000000000 0 4 4 222222222222 9 3 444 6 3 6 6
consensus : AGGGCCTGTCACACACTACCGATGTACCTCGCCGGGACTAAACCGGAGCAAAAAATTAACAACGGCGAGA-AAATCGG--------CGG---------AGCT---CCGGCGAGAAAGCCGCCGATCCATTACGGGGCGCTACCGGTGCTCTACCGACATTAACGAAGCCATACCGGAGTAC------TG------T------ACTGCCGTTGTAGTCCCGTTG-----------CTCGCTCCGGCAGCGCAACGGCGGAAATTT-TTGAGCATGTTCAAAAATTTCTACCGTCGCCTGCCGTTGCTAAA-TTT-TTCGCCGATGTT-----------CTGACGATGTCCTGACGATGTACTACCGTTCTTTAGCGATGTGATACCGTTGCGCTGCCGTAC---TAGTACCGATCCCCGAAA-ATCGC-CA-AA-TTTGTGCTCCGGTATAGCTCCGGCGACCCAAATCGGCTAGGT
Reference ( family-7805 ) : AGGGCCTGTCACACACTACCGATGTACCTCGCCGGGACTAAACCGGAGCAAAAAATTAACAACGGCGAGA-AAATCGG--------CGG---------AGCT---CCGGCGAGAAAGCCGCCGATCCATTACGGGGCGCTACCGGTGCTCTACCGACATTAACGAAGCCATACCGGAGTAC------TG------T------ACTGCCGTTGTAGTCCCGTTG-----------CTCGCTCCGGCAGCGCAACGGCGGAAATTT-TTGAGCATGTTCAAAAATTTCTACCGTCGCCTGCCGTTGCTAAA-TTT-TTCGCCGATGTT-----------CTGACGATGTCCTGACGATGTACTACCGTTCTTTAGCGATGTGATACCGTTGCGCTGCCGTAC---TAGTACCGATCCCCGAAA-ATCGC-CA-AA-TTTGTGCTCCGGTATAGCTCCGGCGACCCAAATCGGCTAGGT
gi|1 : AGGGCTTGTCACACACTACTGATGTAGCTCGCCGGGACTAAACCGGAGCAAAAAATTAACAACGGCGAGA-AAATCGG--------CGG---------AGCT---CTGGCGAGAAAGCTGCCGATCCATTACAGGGCGCTACCGGTGCTCTACCAACATTAACAAAGCCATACCGGAGTACTGCCGTTG------T------ACTGCCGTTGTACTGCCGTTGTAATATCATTCCTCGCTCCGGCAGCGCAACGGCGGAAATTT-TTGAGCGTGTTCAAAAATTTCTTCCGTCGCCTGCCGTTGCTAAA-TTT-TTCGCCGATGCTCTGACAATGCTCTGACGATGCTCTGACAATGTACTACCGTTCTTTAGTGATGTGATACCGTTGCGCTGCCGTAC---TAGTACCGATCCTCGAAA-ATCGC-CA-AA-TTTGTGCTCCGGTATAGCTCCGGCGACCCTTATCGGCTAGGT
gi|10 : CTACCGATGTAACTCGCCGGGACTAAACCGGAGCAAAAAAATAATAACGGCGAGA-AAATCGG--------CGG---------AGCT---CCGGTGAGAAAGCCGCCGATCCATTACAGCGCGCTACCGGTGCTCTACCGACATTAACGAA-C--TGCCG-----T------TG------T------ACTGCCGTTGTTGTCCCATTG-----------CTCGCTCCGGCAGCGCAACGGCGGAAATAT-TTGAG-ATGTTCa
gi|11 : GGCCTGTCACACACTACCGATGTACCTCGCCGGGACTAAACCG--GCGAGAAA
gi|11 : TCGC--------CGG---------GACTAAACCGGCGAGAAAGCCGTCGATCCATTACGGGGCGCTACCGGTGCTCTATCGACATTAACGAgccgtcgatccattacggggcgctaccggtgctctatcgacattaacga
gi|12 : ggcctgtcacacactaccgatgtaccGTAC---TGGTACCGAT----GTGATACCGT-AGTAA-TTTTTGCTCCGGTTTAGTCCCGGCGA
gi|12 : TGTCACAAACTACCGGTGTACCTCGCCGGGACTAAACCGGAGC-AAAAATT-ACTACGGggtacaccggtagtttgtgaca
gi|13 : gtactggtaccgatgtgataTAC---TAGTACCAATCCCCAAAA-ATCGC-CA-AA-TTTGTGCTCCGGTATAGCTCCGGCGACCTAAATCGGCTAGGT
gi|14 : ACGCACTAACGATGTACATCGCCGG-----------AGCAAAACATTTACAACGGCGAGA-AAATCGG--------CGG---------AGCT---CCGGCGAGAAgtga
gi|15 : AGGGTCTGTCACCCACTACCGATGTACCTCGCCGGGACTAAANNNNNNNNNNATATT
gi|16 : aTATGGCTCTGGCGACCCAAATTGGCTAGGTtc
gi|2 : AGTGCCTGTCACAAACTACCGGTGTACCTCGCCGGGACTAAACCGGAGCAAAAA-TTA-CTACGGT-ATC-ACATCGGTACCAGTACGGTACACATTGAGGT---C--ACCGGAAAGCCGCCGATCCATTACGTGACGTTACCGGTGCTCTACGTACAATAACGAAGCCATACCGGAGTAC-----------------------TGCCGTTGTAGTCCCGTTG-----------CTCGCTCCGGCAGCGCAACGGTGGAATTTT-TTTAGAATGTTCAAAACTTTCTACCGTCGCCTGCCGTTGCTAAATTTT-TTCGCCGATGTT-----------CTGACGAAGTCCTGACGATATACTACCGTTC-TTAGCGATATGATACCGTTGCGCTGCCGTAC---TAGTACCGATCCCCGAAA-ATCAT-CA-AA-TTTGTGCTCCAGTATCGCTCCAGCGACTTAAATCGGCTAGATgtgaca
gi|3 : aCCTGTCACACACTACCGATGTATTTCGCCGGGACTAAACCGGAGCAAAAAGTTAACAACGGCGAGA-AAATCGG--------CGG---------AGCT---CCGGCGAGAAAGTCGCCGATTCATTACGGGGCGGTGCCGGTGTTCTAACGACATTAACGATGCAATACCGGAGTAC------TGCCGTTGT------ACTGCCGTTCCAGACCCGTTG-----------CTCGCCCTGACAGCGCAACGACGGAAAATTATTGAGCCTGTTCAACAAATTCTACCGTCGCCGGCCGTTGCTAAA-TTT-TTCGCCGATGTT-----------CTGACGATGTCCTGACGATGTACTACCGTTCTTTAGCGATGTGTTACCGTTGCGCTACCGTAC---TAATACCGATGCCCGAAA-ATCGC-CA-AA-TTTGTTCTCTGGTATAGCTCCGGCGACCCAAACAGGCTGGGT
gi|4 : GGCCTGTCACACACTACCGATGTACCTCGCCAGGACTAAAC-------------TAACAACGGCGAGA-AAATCGG--------CGG---------AGCT---TTGGCGTGAAAGCCGCCCATCCATTACGGGGCACTTCCGGTGCTCTTCCGACATTAACGAAGCCATACCGGAGTAC------TG------TCGTTGTACTGCCGTTGTAGTCCCATTG-----------TTTGCTCCAGCAGCGCAACGGTGAACATTT-TTGAGCATGTTCAAACATATGTACCTTCGCCTGTCGTTGCTAAA-TTT-TTCGTCGATGTT-----------CTAACGATGAACTGACGATGTACTACCGTTCTTTAGCGATGTGATACCGTTGCGCTGCCGTAC---TAGTACCGATCCCCGAAA-ATCAA-CA-AA-TTTGTGCTTCGATATTGCTCCGGCGACCCAAATCGGATAGGTgtg
gi|5 : GGCCTCTCACACACTACCGATGTACCTCGCCGAGACTAAACCGGAGCAAAAAATTAATAACGGCGAGA-AAATCGG--------TGG---------AGCT---CCGGCGAGAAAACCGCCGATTCACTACGGGGCGCTACCGGTGCTCTACCGACATTAACGAAATCATACCGGA-----------G------T------ACTGCCGTTGTAGTCCCGTTG-----------CTCGCTC-----------CGACGGAAATTT-TTGAGCATGTTCAAAAATTTCTACCGTCGCCTGCCGTTACTAAA-TTTGTTTGCCGATGTT-----------CTGACGATGTCCTGACGATGTATTACCGTTCTTTGGCGGTGTGATACCGTTGCGCTGCCGTAC---TAGTACTGATCCCCGAAA-ATCGC-CA-AATTTTCTGCTCTGGTATAGCTCCGGCGACCCAAATCGGCTAGgt
gi|6 : GGACCTGTCACACACTACTGATGTACCTCG-----------CCGG-GAATAAAGT-----ACGGT---ATACATTGA---------GG----------------CCACCG-GAGAGCCGCCGATCCATTACGGATCTCTATCGGTGCTCTGCATACATTAACGAAGCCATACCGGAGTAC------TG-----------------CCCTTGTAGTCCCGTTG-----------CTCGCTCCGGCAGCGCAACGGCAGAAATTT-TTGAGCATGTTAAAAAGTTACTACCGTCGCCTGCCGTCGCTAAA-TTT-TTCGCCGATGTT-----------ATGACGATGTTCTGATGATGTACTACTGTTC-TTACCGATGTGATACCGTTGCGCTGCCGTAC---TAGTACCGATCCTCGAAA-TTCTCAAA-AA-TGTGTGCCTCGGTATAGCTTCGGCGACCCAATTCGGCTAGGTctgtga
gi|7 : CTGTCACACACTACCGATGTACCTCG-----------CCGG-GAATAAAGT-----ACGGT---ATACATTGA---------GG----------------CCACCG-GAGAGCCGCCGATCCATTACGGAGCGCTATCGGTGCTCTGTATACATTAACGAAGCCATACCGGAGTAC-----------------------TGCCGTTGTAGTCCCGTTG-----------CTCGCTCCGACAGCGCAACGGCAGACATGT-TTGAGCATGTTAAAAAATTTCTACCGTCGCCTGCCGTCGCTAAA-TTT-TTTGCCGATGAT-----------ATGACGATGTTCTGATGATGTACTACTGTTC-TTACCGATGTGATACCGTTGCGCTGCCGTAC---TAGTACCGATCCTCGAAA-TTCTCAAA-AA-TGTGTGCCTCGGTATAGCTTCGGCGACCCAATTCGGCCAGGTgtta
gi|8 : GAAAGCTGCCGATCCATTACGGGGCGCTACCGGCGCTCTACCGGCATAAACGAAGCCATACCGTAGTACCGCCGTTG------T------ACTGCCGTTGTAGTCCCGTTG-----------GTCGCTCCGGCAGCGCAACGGCGGAATTGT-TTGAGCATGTTCAAAAATTTCTACCGTCGCCTGCCATTGCTAAA-TTT-TTCGCCGATGTT----------------------CTGACGATGTATTACTGTTCTTTAGCGTTGTGATACCGTTGCGCTGCCGTAC---TATTACCGATCCCCGAAA-ATCGC-CA-AA-TCTGTGCTCCGGTATAACCCCGGCGACCCAgt
gi|9 : gtatcacatcggtaccagtacggtacacattgagactaccgACTGGTGCTCTACCGACATAAACGAAGTCATACCGGAGTAC-----------------------TGCCGTTGTAGTCCCATTG-----------CTCGCTCCGGCAGCGCAACGGCGGACTTTT-TTTAGCATGATCAAAAATTTCTACCGTCGCCTGCCGTTGCTAAA-TTT-TTCGCCGATGTT-----------CTGACGATGTCCTGACGATATACTACCGTTCTTTAGCGATGTGATACCGTTGCGCTGCCGTGCTAGTAGTACCGATCTCCGAAA-ATCGC-CA-AA-TTTGTGCTCCGGTATAGCTCCGGCAACCCAAATCGGCTc