lowQualScore : 1111111111111111111111111111111111111111111
lowQualScore : 22 1 2 22 2222 1111111111111111111111111111111111111111111 2222 11 22222 1111 111 44444444444444444444 2 4 11
lowQualScore : 11 1 2 0 66 8888 9999999999999999999999999999999999999999999 7 9999 5 11 0 2 88888 33 2 33 33 2 9999999 2 4 9 8888 000 33333333333333333333 0 0 6 22
lowQualScore : .. . . . .. .... ........................................... . .... . .. . . ..... .. . .. .. . ....... . . . .... ... .................... . . . ..
lowQualScore : 00 5 5 0 00 3333 3333333333333333333333333333333333333333333 6 1111 4 00 8 7 77777 77 7 77 99 9 6666666 9 1 6 3333 888 66666666666666666666 0 0 0 00
consensus : NNNNNNNNNNNNNNNNNTGCATTTTTCNAAAANGTGGGTATTCATTTT----GGTC----C--AA-CCTCT-----------------T----------TTTNAAG-GTTTTACAAACAAT-ATTGTGTTTGATAA-TT--G-TTTCAC--AAACA-AAT--ACACATTAC--AA-T-NA----GG-TTTCTTTTTACTGAT--AACACTT-----CANATTTNNAAACA-AAATTGGCAAGAG-GCATTTGTTA
Reference ( gi|5 ) : AAAAATACAGAATTCATTGCCCTTTTTTAAAAGG-GGATGTTCATTTT----GGTC----C--AAATTTCT-----------------T----------TTTGAAGTGTGTTACAAACGAT-CTTGTGTTTGATAA-T---A-TTTCAC--AAACA-AAT--ACACATTAC--AA-T-AA----GG-TTCCTGTTCATGGAC--AACACTT-----CATAGTTATGAACACAAATTGGC-AGAGTGCATCTACTA
gi|1 : TGCATTTTTCCAAAATGTGGGTATTCATTTT----GGTCACCCC--CACCCTCTAAAGAAAAAGAGAAGTGT----------TTTAAAA-GTTTTACAAACAAT-TTT-TGTTTGATAT-T---G-ATTCAC--AA-----AT--ACACATTAC--AA-T-TA----GG-TTTCATTTTACTGAT--AAAACTTAAAAACAAATTTCAGACCA-AAATTGGTAAGAG-GCATTTGTTA
gi|4 : aaTTTTTAAAAAGG-GGAT---TATTTTTGGGGGTCT---C--A-----CT-----------------T----------TTTTA---GTTTTCAAAAAAAT-ATT---TTT-ATAT-T---G-TTTCAA--AAGCATAAT--ACACATTAC--AA-T-TT----GG-TTTCagggggtaggtggagcgtttatat
gi|3 : ggtgatgaaTCATTTT----GGTC----CTTAAATTTTT-----------------TAAAAAAAACCTTTGAAG--------ATATAAT-ATTGTTTCAGATAA-TT--G-TTTGGC--AAACA-AAT--ACATATTAC--AA-T-AA----AG-TTTCATTTAACTGAT--AACACTT-----attttaatgatttacttcttttttttttccagaccaaaattggtggtaggggagaggtatttattaggggtggagatgtttatatg
gi|16 : T-----------------T----------TTTGAAG-ATTTTACTAACAAAAC--ATATTTGACAA-TCATG-TTTCAC--AACCA-AAT--ATACATTAC--AA-T-TA----GG-CTTTTTTTC-T-GAT--AATGCTT-----ttaattttttttatatatatatatatcggacgaaacttggtgtgtttatgtggtaagggggtctgggagtggtagcacttctccggg
gi|15 : ttat-----------------T----------TTT--AGTGTGCTACAAGTAAT-CCTGTACTTGATAA-T---AGTTCCAC--AAACA-AAT--ACATATCAC--AA-C-TA----GA-TTTCTATTTACAGGT--TACA-TT-----TATATTTAAAAAAAAAAAaaaaaacaaacata
gi|8 : -----------------T----------TTTTAAG-GTTTTACCAACAAA-ATTGTGTTTAATAA-TT--G-TTTCAC--AAACA-AAC--ACACATTAT--AATT-GA----G---TGATGTTTATGGAT--AAAACTatt
gi|12 : ----------TTTGAATAGTTTTACAAACGAT-ATTGTGTTTAATAA-----A-T---------ACA-AAT--ACACATTAC--AA-T-TA----GGTTTTTTTTTCACTGCT--AACACTT-----CAAAACT-TAAA-ACAAAgataaaaaaaaattttctaaattttcacaccaaaatttgttgggagtgtttattgggggaaatac
gi|17 : cctctacataaatatgatgaaagagTTTAAGAGT-TTACAAACAAT-ATTGCGTTTGATAC-TT--A-TTTCAC--AAACA-AAT--ACACATTAC--AA-T-TA----AG-TTTCTTTTTACTAAA--AACACTcaaaa
gi|9 : ttggaataaaaTACAAACAAT-ATTGTGGTTGATAA-TT--A-TTTCAC--TAGCA-TAT--ACAAGTTAC--GA-T-CA----GG-TTaaaaa
gi|21 : CAAAATAT-CTTGTTTTTGATAG-TT--G-TTTCAC--AAACA-AAT--ACACATTAtaaattaactgataacattaaaaaaaaatgtttttttaatttttcagaccaaaaatggtggtgggggcggggttatgtgggagtcgttta
gi|10 : AACAAT-ATTGTGTTTGATAA-T---T-TTTTCCTAGAACT-A-T--ACACAGTGC--AA-T-TA----AG-TTTCTTTTTACTGAT--AACACTT-----TAT
gi|18 : ttttaggaacaaaaacatttaattTTTTGTTTGATAA-TT--G-TTTCAC--AAACA-AATACACACATTAT-----T-AA----GT-TTttttaaaataaaaaaaaagaccaaaattggtcactgagtaattta
gi|11 : aGCGTTTAACAAAT---G-TTTCCC--AAGCA-ATT--ACACATAAC--AT-TCAG----GG-CTCTTTTTAAT-GACAAAACATTT----------TTTTAAACA-AAATTGAC-gacagtttgcaggttcaagatctttttattttatacactc
gi|19 : agtttgtttttttaaaaaaaaTGTTTAAGAG-T---G-TGTCA----AACA-AAT--ACACATGAC--TA-T-AA----TG-TTTCATTTTACTGGT--AACACTT-----CAcggctgtttatttgggggaatacggtaga
gi|6 : TTGATAA-TT--G-TTTCAG--AAATA-AAC--ACACATTACTAAA-T-AAGTGGGG-TGCCTGTTTA
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|2 ): AATAAATAATCTTGTTTTACAGATAAAAACACAATTAGACAGTTTGCAGGTTTCTTTTTACTGCTAACACTTACAAAACAAAAGATAAATGAAAAAAAAAAACAACCAAATTTCTCGGACCAAAATTGGTGGTGGTTGTGTGGGGGGGGGGGTTATTATGGGGTAATATTTATTTGTGGGAGGGCAATACAGATTGTACCTGCTTTTTTACT
Unaligned ( gi|7 ): AGTGCCTGTAAATGAGTAGTTTTACAAACATTGTCATATTTCACAAGTAATTATACAGTGTATTGAGGTTTCTTTTAACTAATAAAAACTTCTTTTTTTTTAAATCTCTTGGACCAAAATTGGTGTGAGGGCATTTATTAGAGGGGGAGCGCTTGTACAG
Unaligned ( gi|13 ): ATTTGATATTGTTTCACAACCAGTTAGATTTCTTTTTACTGATAACATCTTTTTTTAATTTTATGAATCAAAATTGGTGTGGGTGTGGGGGCATTGATTAGGAAGAGGTTAGCATTTATTTGGGG
Unaligned ( gi|14 ): ACACATTACAATCAGGTTTCATTTTACTGATGATAAAAAAAAAAAATAAAAATAAAGAAAAAAAAAAAATCATAACAAAATTGATTGTGTGTGTGTGTGGGTGGGGGTTGCTATTAGG
Unaligned ( gi|20 ): ATGCATATTTCAAAAAAAGAATGTTTATTTAGGTACCCAAAATATTAAAAAAAAGAAATA
Unaligned ( gi|22 ): GAATACGGTATAGAGTTATACATCTTTTGTATT
Alignments
lowQualScore : 1111111111111111111111111111111111
lowQualScore : 11 2 2222 0000000000000000000000000000000000 111111111 2222222222222222222222222222222 33333333 1 1
lowQualScore : 77 1 3 7 2 1111 6666666666666666666666666666666666 1 333333333 2 2 8888 2 0 2 2 22 22 4444 0 2 2 55555 9999999999999999999999999999999 3 66666666 0 0 2
lowQualScore : .. . . . . .... .................................. . ......... . . .... . . . . .. .. .... . . . ..... ............................... . ........ . . .
lowQualScore : 77 0 7 3 5 2222 7777777777777777777777777777777777 0 222222222 9 3 3333 1 6 1 0 88 99 7777 2 4 4 99999 2222222222222222222222222222222 3 88888888 0 0 0
consensus : NNNNNNNNNNNNNNNNNTGCATTTTTCCAAAANG-GGGTATTCATTTT----GGTC-----C---AA-TCTCT-----------------TTTTNAA-G-G-----TTTTACAA-ACAATATTGTGTTTGATAAT--TGTTTCACA-AACA-AATACACA-TTA--C--AATT---AGGTTTCTTTTT-ACTGAT-AACA-----CTT-----C----ANATTTNNAAA----------CA-AAATTGGC-------GAGA-G-GCATTTATTA
Reference ( family-7360 ) : NNNNNNNNNNNNNNNNNTGCATTTTTCNAAAANGTGGGTATTCATTTT----GGTC-----C---AA-CCTCT-----------------TTTTNAA-G-G-----TTTTACAA-ACAATATTGTGTTTGATAAT--TGTTTCACA-AACA-AATACACA-TTA--C--AATN---AGGTTTCTTTTT-ACTGAT-AACA-----CTT-----C----ANATTTNNAAA----------CA-AAATTGGC-------AAGA-G-GCATTTGTTA
gi|1 : TGCATTTTTCCAAAATGTGGGTATTCATTTT----GGTCACCCCC---AC-CCTCTAAAGAAAAAGAGAAGTGTTTTAAA-A-G-----TTTTACAA-ACAAT-TTTTGTTTGATA-T--TGATTCACA-A-----ATACACA-TTA--C--AATT---AGGTTTCATTTT-ACTGAT-AAAA-----CTTAAAAAC----AAATTTCAGAC----------CA-AAATTGGT-------AAGA-G-GCATTTGTTA
gi|10 : aaA-ACAATATTGTGTTTGATAAT--TTTTTCCTAGAAC--TATACACA-GTG--C--AATT---AAGTTTCTTTTT-ACTGAT-AACA-----CTT-----T----AT-TTTTAAAA----------TA-AAAagggggtaggtggagcgtttatat
gi|11 : ttttaggaacaaaaacatttaatt-----TTTTAAAA-AAAA----GCGTTTAACAAA--TGTTTCCCA-AGCA-ATTACACA-TAA--C--ATTC---AGGGCTCTTTTT-AATGAC-AAAA-------------C----ATTTTTTTAAA----------CA-AAATTGAC-------aaaaagaccaaaattggtcactgagtaattta
gi|12 : agtttgtttTTTGAATA-G-----TTTTACAA-ACGATATTGTGTTTAATAA-----------A-TACA-AATACACA-TTA--C--AATT---AGGTTTTTTTTTCACTGCT-AACA-----CTT-----C----AAAACTTAAAA----------CA-AAcggctgtttatttgggggaatacggtaga
gi|13 : cctctacataaatatgatgaaagagTTTGATA-T--TGTTTCACA-A----------C-------C--AGTT---AGATTTCTTTTT-ACTGAT-AACATCTTTTTT-----T----AATTTTATGAAT---------CA-AAATTGGcaaaa
gi|14 : aACACA-TTA--C--AATC---AGGTTTCATTTT-ACTGAT-GATA-----tgtgggtgtgggggcattgattaggaagaggttagcatttatttgggg
gi|15 : TTTTAG-T-G-----TGCTACAA-GTAATCCTGTACTTGATAAT--AGTTCCACA-AACA-AATACATA-TCA--C--AACT---AGATTTCTATTT-ACAGGT-TACA------TT-----T----ATATTTAAAAA----------AA-AAAaaaaaaaaaaataaaaataaagaaaaaaaaaaaatcataacaaaattgattgtgtgtgtgtgtgggtgggggttgctattagg
gi|16 : T-----------------TTTTGAA-G-A-----TTTTACTA-ACAAAAC-ATATTTGACAATCATGTTTCACA-ACCA-AATATACA-TTA--C--AATT---AGGCTTTTTTT---CTGAT-AATG-----CTT----------AAA-----AAA----------CA-AAaatt
gi|17 : ttatTTTAA-G-A-----GTTTACAA-ACAATATTGCGTTTGATACT--TATTTCACA-AACA-AATACACA-TTA--C--AATT---AAGTTTCTTTTT-ACTAAA-AACA-----CTcata
gi|18 : ttggaataaaaATTTTGTTTGATAAT--TGTTTCACA-AACA-AATACACA--CA--T--TATT---AAGTTTaaaaa
gi|19 : TGTTTAAGAGTG-TGT----CA-AACA-AATACACA-TGA--C--TATA---ATGTTTCATTTT-ACTGGT-AACA-----CTT-----C----Agacagtttgcaggttcaagatctttttattttatacactc
gi|2 : ATAATCTTGTTTTACA-GATA-AAAACACAATTAGAC--AGTTTGCAGGTTTCTTTTT-ACTGCT-AACA-----CTT----------ACA-----AAA----------CA-AAA
gi|21 : aataaCAA-AATATCTTGTTTTTGATAGT--TGTTTCACA-AACA-AATACACA-TTA--gataaatgaaaaaaaaaaacaaccaaatttctcggaccaaaattggtggtggttgtgtgggggggggggttattatggggtaatatttatttgtgggagggcaatacagattgtacctgcttttttact
gi|3 : TCATTTT----GGTC-----CTTAAA-T---T-----------------TTTTAAA-A-AAAACCTTTGAAGATATAATATTGTTTCAGATAAT--TGTTTGGCA-AACA-AATACATA-TTA--C--AATA---AAGTTTCATTTA-ACTGAT-AACA-----CTT-----T----TAATTT
gi|4 : TGAATTTTT--AAAAAG-GGG-ATT-ATTTTTGGGGGTCT----C---A-----CT-----------------TTTTTA----G-----TTTTCAAA-AAAATATT---TTT-ATA-T--TGTTTCAAA-AGCATAATACACA-TTA--C--AATT---TGGTTTCATTTT-AATGAT--TTA-----CTT-----CTTTTTTTTTTCCAGAC---------CA-AAATTGGTGGTAGGGGAGA-G-GTATTTATTAtttttatatatatatatatcggacgaaacttggtgtgtttatgtggtaagggggtctgggagtggtagcacttctccggg
gi|5 : ggtgaTGCCCTTTTTTAAAAGG-GGATGTTCATTTT----GGTC-----C---AAATTTCT-----------------TTTTGAA-GTG-----TGTTACAA-ACGATCTTGTGTTTGATAAT---ATTTCACA-AACA-AATACACA-TTA--C--AATA---AGGTTCCTGTTC-ATGGAC-AACA-----CTT-----C----ATAGTTATGAA----------CACAAATTGGC--------AGA-GTGCATCTACTAggggtggagatgtttatatg
gi|6 : aaaaatacagaattcatTTGATAAT--TGTTTCAGA-AATA-AACACACA-TTA--CTAAATA---AG
gi|7 : -G-----TTTTACAA-ACA---TTGTC----ATA------TTTCACA-AGTA-ATTATACA-GTG--T--ATTG---AGGTTTCTTTTA-ACTAATAAAAA-----CTT-----CT---TTTTTTTTAAATCTCTTGGACCA-AAATTGGT-------GTGAGG-GCATTTATTAtggggtgcctgtttaagttggcagtttgtgggtatccttttcctgataaaaaattctccgaaccacactgttggttggtgacatttattgggggcgtttattcagggaaatacagtattta
gi|8 : agtgcctgtaaatgagta-----------------TTTTTAA-G-G-----TTTTACCA-ACAAAATTGTGTTTAATAAT--TGTTTCACA-AACA-AACACACA-TTA--T--AATT---GAG-TGATGTTT-ATGGAT-AAAA-----CT------------GAT---AAAA----------AA-AAATTgagggggagcgcttgtacag
gi|9 : TACAA-ACAATATTGTGGTTGATAAT--TATTTCACT-AGCA-TATACAAG-TTA--C--GATC---AGGTTTAAATTA-ACTGAT-AACA-----TTttctaaattttcacaccaaaatttgttgggagtgtttattgggggaaatac
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): ATGCATATTTCAAAAAAAGAATGTTTATTTAGGTACCCAAAATATTAAAAAAAAGAAATA
Unaligned ( gi|22 ): GAATACGGTATAGAGTTATACATCTTTTGTATT
Alignments
lowQualScore : 11 1 2222 9999999999999999999999999999999999 111111111 1111111 111111 22222222222222222222222222222222 55555555555555555
lowQualScore : 55 1 3 7 2 1111 3333333333333333333333333333333333 1 333333333 2 2 8888 2 0 2 2 22 2 333 2 0 0000000 2 222222 77777777777777777777777777777777 3 11111111111111111 5 5 5
lowQualScore : .. . . . . .... .................................. . ......... . . .... . . . . .. . ... . . ....... . ...... ................................ . ................. . . .
lowQualScore : 77 0 3 3 5 2222 7777777777777777777777777777777777 0 222222222 9 3 3333 1 6 1 0 88 1 777 2 2 0000000 4 666666 22222222222222222222222222222222 3 11111111111111111 7 7 7
consensus : NNNNNNNNNNNNNNNNNTGCATTTTTCCAAAANG-GGGTATTCATTTT----GGTC-----C---AA-TCTCT-----------------TTTTNAA-G-G-----TTTTACAA-ACAATATTGTGTTTGATAAT--TGTTTCACA-AACA-AATACACA-TTA--C-AATT---AGGTT-TCTTTTT-------ACTGAT-AACA------CTT-----C----ANATTTNNA-AA----------CA-AAATTGGT-------G-------AGA-G-GC-GTTTATTA
Reference ( family-7360 ) : NNNNNNNNNNNNNNNNNTGCATTTTTCCAAAANG-GGGTATTCATTTT----GGTC-----C---AA-TCTCT-----------------TTTTNAA-G-G-----TTTTACAA-ACAATATTGTGTTTGATAAT--TGTTTCACA-AACA-AATACACA-TTA--C-AATT---AGGTT-TCTTTTT-------ACTGAT-AACA------CTT-----C----ANATTTNNA-AA----------CA-AAATTGGC-------G-------AGA-G-GC-ATTTATTA
gi|1 : TGCATTTTTCCAAAATGTGGGTATTCATTTT----GGTCACCCCC---AC-CCTCTAAAGAAAAAGAGAAGTGTTTTAAA-A-G-----TTTTACAA-ACAAT-TTTTGTTTGATA-T--TGATTCACA-A-----ATACACA-TTA--C-AATT---AGGTT-TCATTTT-------ACTGAT-AAAA------CTTAAAAAC----AAATTTCAG-AC----------CA-AAATTGGT-------A-------AGA-G-GC-ATTTGTTA
gi|10 : aaA-ACAATATTGTGTTTGATAAT--TTTTTCCTAGAAC--TATACACA-GTG--C-AATT---AAGTT-TCTTTTT-------ACTGAT-AACA------CTT-----T----AT-TTTTAA-AA----------TA-AAAagggggtaggtggagcgtttatat
gi|11 : ttttaggaacaaaaacatttaatt-----TTTTAAAA-AAAA----GCGTTTAACAAA--TGTTTCCCA-AGCA-ATTACACA-TAA--C-ATTC---AGGGC-TCTTTTT-------AATGAC-AAAA--------------C----ATTTTTTTA-AA----------CA-AAATTGAC-----------------C-G-GCTGTTTATTaaaaagaccaaaattggtcactgagtaattta
gi|12 : agtttgtttTTTGAATA-G-----TTTTACAA-ACGATATTGTGTTTAATAA-----------A-TACA-AATACACA-TTA--C-AATT---AGGTT-TTTTTTTC------ACTGCT-AACA------CTT-----C----AAAACTTAA-AA----------CA-AAtgggggaatacggtaga
gi|13 : cctctacataaatatgatgaaagagTTTGATA-T--TGTTTCACA-A----------C-------C-AGTT---AGATT-TCTTTTT-------ACTGAT-AACATCTTT-TTT-----T----AATTTTATG-AAT---------CA-AAATTGGT-------GTGGGTGTGGG-G-GC-ATTGATTAcaaaa
gi|14 : aACACA-TTA--C-AATC---AGGTT-TCATTTT-------ACTGAT-GATA------ggaagaggttagcatttatttgggg
gi|15 : TTTTAG-T-G-----TGCTACAA-GTAATCCTGTACTTGATAAT--AGTTCCACA-AACA-AATACATA-TCA--C-AACT---AGATT-TCTATTT-------ACAGGT-TACA-------TT-----T----ATATTTAAA-AA----------AA-AAAaaaaaaaaaaataaaaataaagaaaaaaaaaaaatcataacaaaattgattgtgtgtgtgtgtgggtgggggttgctattagg
gi|16 : T-----------------TTTTGAA-G-A-----TTTTACTA-ACAAAAC-ATATTTGACAATCATGTTTCACA-ACCA-AATATACA-TTA--C-AATT---AGGCT-TTTTTT---------CTGAT-AATG------CTT----------AAA-----A-AA----------CA-AAaatt
gi|17 : ttatTTTAA-G-A-----GTTTACAA-ACAATATTGCGTTTGATACT--TATTTCACA-AACA-AATACACA-TTA--C-AATT---AAGTT-TCTTTTT-------ACTAAA-AACA------CTcata
gi|18 : ttggaataaaaATTTTGTTTGATAAT--TGTTTCACA-AACA-AATACACA--CA--T-TATT---AAGTT-Taaaaa
gi|19 : TGTTTAAGAGTG-TGT----CA-AACA-AATACACA-TGA--C-TATA---ATGTT-TCATTTT-------ACTGGT-AACA------CTT-----C----Agacagtttgcaggttcaagatctttttattttatacactc
gi|2 : ATAATCTTGTTTTACA-GATA-AAAACACAATTAGAC-AGTTTGCAGGTT-TCTTTTT-------ACTGCT-AACA------CTT----------ACA-----A-AA----------CA-AAA
gi|21 : aataaCAA-AATATCTTGTTTTTGATAGT--TGTTTCACA-AACA-AATACACA-TTA--gataaatgaaaaaaaaaaacaaccaaatttctcggaccaaaattggtggtggttgtgtgggggggggggttattatggggtaatatttatttgtgggagggcaatacagattgtacctgcttttttact
gi|3 : TCATTTT----GGTC-----CTTAAA-T---T-----------------TTTTAAA-A-AAAACCTTTGAAGATATAATATTGTTTCAGATAAT--TGTTTGGCA-AACA-AATACATA-TTA--C-AATA---AAGTT-TCATTTA-------ACTGAT-AACA------CTT-----T----TAATTT
gi|4 : TGAATTTTT--AAAAAG-GGG-ATT-ATTTTTGGGGGTC------------TCACT-----------------TTTTTA----G-----TTTTCAAA-AAAATATT---TTT-ATA-T--TGTTTCAAA-AGCATAATACACA-TTA--C-AATT---TGGTT-TCATTTT-------AATGAT--TTA------CTT-----CTTTTTTTTTTCCA-GAC---------CA-AAATTGGTGGTAGGGG-------AGA-G-GT-ATTTATTAtttttatatatatatatatcggacgaaacttggtgtgtttatgtggtaagggggtctgggagtggtagcacttctccggg
gi|5 : ggtgaTGCCCTTTTTTAAAAGG-GGATGTTCATTTT----GGTC-----C---AAATTTCT-----------------TTTTGAA-GTG-----TGTTACAA-ACGATCTTGTGTTTGATAAT---ATTTCACA-AACA-AATACACA-TTA--C-AATA---AGGTT-CCTGTTC-------ATGGAC-AACA------CTT-----C----ATAGTTATG-AA----------CACAAATTGGC---------------AGA-GTGC-ATCTACTAggggtggagatgtttatatg
gi|6 : aaaaatacagaattcatTTGATAAT--TGTTTCAGA-AATA-AACACACA-TTA--CTAAAT---AAGT
gi|7 : -G-----TTTTACAA-ACA---TTGTC----ATA------TTTCACA-AGTA-ATTATACA-GTG--T-ATTG---AGGTT-TCTTTTA-------ACTAATAAAAA------CTT-----CT---TTTTTTTTA-AATCTCTTGGACCA-AAATTGGT-------G-------TGAGG-GC-ATTTATTAggggtgcctgtttaagttggcagtttgtgggtatccttttcctgataaaaaattctccgaaccacactgttggttggtgacatttattgggggcgtttattcagggaaatacagtattta
gi|8 : agtgcctgtaaatgagta-----------------TTTTTAA-G-G-----TTTTACCA-ACAAAATTGTGTTTAATAAT--TGTTTCACA-AACA-AACACACA-TTA--T-AATT---GAGTGATGTTTATGGATAAAACTGAT-AAAAAAAAATTTT-----CT---AAATTTTCACAC----------CA-AAATTTGT-------T-------GGG-A-GT-GTTTATTgagggggagcgcttgtacag
gi|9 : TACAA-ACAATATTGTGGTTGATAAT--TATTTCACT-AGCA-TATACAAG-TTA--C-GATC---AGGTT-TAAATTA-------ACTGAT-AACA------TTgggggaaatac
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): ATGCATATTTCAAAAAAAGAATGTTTATTTAGGTACCCAAAATATTAAAAAAAAGAAATA
Unaligned ( gi|22 ): GAATACGGTATAGAGTTATACATCTTTTGTATT
Alignments
lowQualScore : 11 1 2222 9999999999999999999999999999999999 111111111 1111111 111111 22222222222222222222222222222222 444444444444444
lowQualScore : 55 1 3 7 2 1111 3333333333333333333333333333333333 1 333333333 2 2 8888 2 0 2 2 22 2 333 2 0 0000000 2 222222 77777777777777777777777777777777 3 000000000000000 5 5 77
lowQualScore : .. . . . . .... .................................. . ......... . . .... . . . . .. . ... . . ....... . ...... ................................ . ............... . . ..
lowQualScore : 77 0 3 3 5 2222 7777777777777777777777777777777777 0 222222222 9 3 3333 1 6 1 0 88 1 777 2 2 0000000 4 666666 22222222222222222222222222222222 3 111111111111111 7 7 11
consensus : NNNNNNNNNNNNNNNNNTGCATTTTTCCAAAANG-GGGTATTCATTTT----GGTC-----C---AA-TCTCT-----------------TTTTNAA-G-G-----TTTTACAA-ACAATATTGTGTTTGATAAT--TGTTTCACA-AACA-AATACACA-TTA--C-AATT---AGGTT-TCTTTTT-------ACTGAT-AACA------CTT-----C----ANATTTNNA-AA----------CA-AAATTGGT-------G-------AGA-G-GC-GTTTATTA
Reference ( family-7360 ) : NNNNNNNNNNNNNNNNNTGCATTTTTCCAAAANG-GGGTATTCATTTT----GGTC-----C---AA-TCTCT-----------------TTTTNAA-G-G-----TTTTACAA-ACAATATTGTGTTTGATAAT--TGTTTCACA-AACA-AATACACA-TTA--C-AATT---AGGTT-TCTTTTT-------ACTGAT-AACA------CTT-----C----ANATTTNNA-AA----------CA-AAATTGGT-------G-------AGA-G-GC-GTTTATTA
gi|1 : TGCATTTTTCCAAAATGTGGGTATTCATTTT----GGTCACCCCC---AC-CCTCTAAAGAAAAAGAGAAGTGTTTTAAA-A-G-----TTTTACAA-ACAAT-TTTTGTTTGATA-T--TGATTCACA-A-----ATACACA-TTA--C-AATT---AGGTT-TCATTTT-------ACTGAT-AAAA------CTTAAAAAC----AAATTTCAG-AC----------CA-AAATTGGT-------A-------AGA-G-GC-ATTTGTTA
gi|10 : aaA-ACAATATTGTGTTTGATAAT--TTTTTCCTAGAAC--TATACACA-GTG--C-AATT---AAGTT-TCTTTTT-------ACTGAT-AACA------CTT-----T----AT-TTTTAA-AA----------TA-AAAagggggtaggtggagcgtttatat
gi|11 : ttttaggaacaaaaacatttaatt-----TTTTAAAA-AAAA----GCGTTTAACAAA--TGTTTCCCA-AGCA-ATTACACA-TAA--C-ATTC---AGGGC-TCTTTTT-------AATGAC-AAAA--------------C----ATTTTTTTA-AA----------CA-AAAT---T-------G-------ACC-G-GCTGTTTATTaaaaagaccaaaattggtcactgagtaattta
gi|12 : agtttgtttTTTGAATA-G-----TTTTACAA-ACGATATTGTGTTTAATAA-----------A-TACA-AATACACA-TTA--C-AATT---AGGTT-TTTTTTTC------ACTGCT-AACA------CTT-----C----AAAACTTAA-AA----------CA-AAtgggggaatacggtaga
gi|13 : cctctacataaatatgatgaaagagTTTGATA-T--TGTTTCACA-A----------C-------C-AGTT---AGATT-TCTTTTT-------ACTGAT-AACATCTTT-TTT-----T----AATTTTATG-AAT---------CA-AAATTGGT-------GTGGGTGTGGG-G-GC-ATTGATTAcaaaa
gi|14 : aACACA-TTA--C-AATC---AGGTT-TCATTTT-------ACTGAT-GATA------ggaagaggttagcatttatttgggg
gi|15 : TTTTAG-T-G-----TGCTACAA-GTAATCCTGTACTTGATAAT--AGTTCCACA-AACA-AATACATA-TCA--C-AACT---AGATT-TCTATTT-------ACAGGT-TACA-------TT-----T----ATATTTAAA-AA----------AA-AAAaaaaaaaaaaataaaaataaagaaaaaaaaaaaatcataacaaaattgattgtgtgtgtgtgtgggtgggggttgctattagg
gi|16 : T-----------------TTTTGAA-G-A-----TTTTACTA-ACAAAAC-ATATTTGACAATCATGTTTCACA-ACCA-AATATACA-TTA--C-AATT---AGGCT-TTTTTT---------CTGAT-AATG------CTT----------AAA-----A-AA----------CA-AAaatt
gi|17 : ttatTTTAA-G-A-----GTTTACAA-ACAATATTGCGTTTGATACT--TATTTCACA-AACA-AATACACA-TTA--C-AATT---AAGTT-TCTTTTT-------ACTAAA-AACA------CTcata
gi|18 : ttggaataaaaATTTTGTTTGATAAT--TGTTTCACA-AACA-AATACACA--CA--T-TATT---AAGTT-Taaaaa
gi|19 : TGTTTAAGAGTG-TGT----CA-AACA-AATACACA-TGA--C-TATA---ATGTT-TCATTTT-------ACTGGT-AACA------CTT-----C----Agacagtttgcaggttcaagatctttttattttatacactc
gi|2 : ATAATCTTGTTTTACA-GATA-AAAACACAATTAGAC-AGTTTGCAGGTT-TCTTTTT-------ACTGCT-AACA------CTT----------ACA-----A-AA----------CA-AAA
gi|21 : aataaCAA-AATATCTTGTTTTTGATAGT--TGTTTCACA-AACA-AATACACA-TTA--gataaatgaaaaaaaaaaacaaccaaatttctcggaccaaaattggtggtggttgtgtgggggggggggttattatggggtaatatttatttgtgggagggcaatacagattgtacctgcttttttact
gi|3 : TCATTTT----GGTC-----CTTAAA-T---T-----------------TTTTAAA-A-AAAACCTTTGAAGATATAATATTGTTTCAGATAAT--TGTTTGGCA-AACA-AATACATA-TTA--C-AATA---AAGTT-TCATTTA-------ACTGAT-AACA------CTT-----T----TAATTT
gi|4 : TGAATTTTT--AAAAAG-GGG-ATT-ATTTTTGGGGGTC------------TCACT-----------------TTTTTA----G-----TTTTCAAA-AAAATATT---TTT-ATA-T--TGTTTCAAA-AGCATAATACACA-TTA--C-AATT---TGGTT-TCATTTT-------AATGAT--TTA------CTT-----CTTTTTTTTTTCCA-GAC---------CA-AAATTGGTGGTAGGGG-------AGA-G-GT-ATTTATTAtttttatatatatatatatcggacgaaacttggtgtgtttatgtggtaagggggtctgggagtggtagcacttctccggg
gi|5 : ggtgaTGCCCTTTTTTAAAAGG-GGATGTTCATTTT----GGTC-----C---AAATTTCT-----------------TTTTGAA-GTG-----TGTTACAA-ACGATCTTGTGTTTGATAAT---ATTTCACA-AACA-AATACACA-TTA--C-AATA---AGGTT-CCTGTTC-------ATGGAC-AACA------CTT-----C----ATAGTTATG-AA----------CACAAATTGGC---------------AGA-GTGC-ATCTACTAggggtggagatgtttatatg
gi|6 : aaaaatacagaattcatTTGATAAT--TGTTTCAGA-AATA-AACACACA-TTA--CTAAAT---AAGT
gi|7 : -G-----TTTTACAA-ACA---TTGTC----ATA------TTTCACA-AGTA-ATTATACA-GTG--T-ATTG---AGGTT-TCTTTTA-------ACTAATAAAAA------CTT-----CT---TTTTTTTTA-AATCTCTTGGACCA-AAATTGGT-------G-------TGAGG-GC-ATTTATTAggggtgcctgtttaagttggcagtttgtgggtatccttttcctgataaaaaattctccgaaccacactgttggttggtgacatttattgggggcgtttattcagggaaatacagtattta
gi|8 : agtgcctgtaaatgagta-----------------TTTTTAA-G-G-----TTTTACCA-ACAAAATTGTGTTTAATAAT--TGTTTCACA-AACA-AACACACA-TTA--T-AATT---GAGTGATGTTTATGGATAAAACTGAT-AAAAAAAAATTTT-----CT---AAATTTTCACAC----------CA-AAATTTGT-------T-------GGG-A-GT-GTTTATTgagggggagcgcttgtacag
gi|9 : TACAA-ACAATATTGTGGTTGATAAT--TATTTCACT-AGCA-TATACAAG-TTA--C-GATC---AGGTT-TAAATTA-------ACTGAT-AACA------TTgggggaaatac
blockSeqs : TT A . T C TGGG CAAATTTCT G AAAAACC T A ATCA G T A GA T TGC A GGATAAA A AAAAAT CTTTTTTTTTAAATCTCTTGGAC C GTGGGTGT G T TG
blockSeqs : . G . . C . CTTAAATT T TAG . A ATCT . . . . . . . C . TCTTT CTTTTTTTTTTCCAGAC . GGTAGGGG . . A
blockSeqs : . . TCACT G GTG . C GTG . . . . . . . . . . CTAAATTTTCACAC . G . . A
blockSeqs : T TG . A AT . . . . . . . . . . TAATTTTATGAAT . G . . A
blockSeqs : A GA . A AA . . . . . . . . . . CATTTTTTTAAA . T . . A
blockSeqs : T GA . A AT . . . . . . . . . . CAAAACTTAAAA . . . . G
blockSeqs : G GG . C CT . . . . . . . . . . TATATTTAAAAA .
blockSeqs : T G . A AT . . . . . . . . . . CATAGTTATGAA .
blockSeqs : . A GT . . . . . . . . . . TATTTTTAAAA .
blockSeqs : . C AT . . . . . . . . . . AAAAAA .
blockSeqs : . A AT . . . . . . . . . . ACAAAA .
blockSeqs : . A AT . . . . . . . . . .
blockSeqs : . . AT . . . . . . . . . .
blockSeqs : . AT . . . . . . . . . .
blockSeqs : A . . . . . . . . . .
blockSeqs : T . . . . . . . . . .
blockSeqs : T . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . .
blockSeqCons : AT** CATTTTTAAAA*********************
originalCons : NNNNNNNNNNNNNNNNNTGCATTTTTCCAAAANG-GGGTATTCATTTT----GGTC-----C---AA-TCTCT-----------------TTTTNAA-G-G-----TTTTACAA-ACAATATTGTGTTTGATAAT--TGTTTCACA-AACA-AATACACA-TTA--C-AATT---AGGTT-TCTTTTT-------ACTGAT-AACA------CTT-----C----ANATTTNNA-AA----------CA-AAATTGGT-------G-------AGA-G-GC-GTTTATTA
finalCons : NNNNNNNNNNNNNNNNNTGCATTTTTCCAAAANG-GGGTATTCATTTT----GGTC-----C---AA-TCTCT-----------------TTTTNAA-G-G-----TTTTACAA-ACAATATTGTGTTTGATAAT--TGTTTCACA-AACA-AATACACA-TTA--C-AATT---AGGTT-TCTTTTT-------ACTGAT-AACA------CTTCATTTTTAAAA---------------------CA-AAATTGGT-------G-------AGA-G-GC-GTTTATTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): ATGCATATTTCAAAAAAAGAATGTTTATTTAGGTACCCAAAATATTAAAAAAAAGAAATA
Unaligned ( gi|22 ): GAATACGGTATAGAGTTATACATCTTTTGTATT
Alignments
lowQualScore : 11 1 2222 999999999999999999999999999999999 111111111 1111111 111111 333333333333333333333333 1111111111 444444444444444
lowQualScore : 55 1 3 7 2 1111 333333333333333333333333333333333 1 333333333 2 2 9999 2 0 2 2 22 2 333 2 0 0000000 444444 555555555555555555555555 3 2222222222 3 000000000000000 5 5 77
lowQualScore : .. . . . . .... ................................. . ......... . . .... . . . . .. . ... . . ....... ...... ........................ . .......... . ............... . . ..
lowQualScore : 77 0 3 3 5 2222 777777777777777777777777777777777 0 222222222 9 3 6666 1 6 1 0 88 1 777 2 2 0000000 111111 555555555555555555555555 1 8888888888 1 111111111111111 7 7 11
consensus : NNNNNNNNNNNNNNNNNTGCATTTTTCCAAAANG-GGGTATTCATTTT----GGTC-----C---AATCTCT-----------------TTTTNAA-G-G-----TTTTACAA-ACAATATTGTGTTTGATAAT--TGTTTCACA-AACA-AATACACA-TTA--C-AATT---AGGTT-TCTTTTT-------ACTGATAACA------CTT-----C-----ATTTT-T------A-AA--------A-CA-AAATTGGT-------G-------AGA-G-GC-GTTTATTA
Reference ( family-7360 ) : NNNNNNNNNNNNNNNNNTGCATTTTTCCAAAANG-GGGTATTCATTTT----GGTC-----C---AATCTCT-----------------TTTTNAA-G-G-----TTTTACAA-ACAATATTGTGTTTGATAAT--TGTTTCACA-AACA-AATACACA-TTA--C-AATT---AGGTT-TCTTTTT-------ACTGATAACA------CTT-----C-----ATTTT-T------A-AA--------A-CA-AAATTGGT-------G-------AGA-G-GC-GTTTATTA
gi|1 : TGCATTTTTCCAAAATGTGGGTATTCATTTT----GGTCACCCCC---ACCCTCTAAAGAAAAAGAGAAGTGTTTTAAA-A-G-----TTTTACAA-ACAAT-TTTTGTTTGATA-T--TGATTCACA-A-----ATACACA-TTA--C-AATT---AGGTT-TCATTTT-------ACTGATAAAA------CTTAAAAACA----AATTT-C------A-GA--------C-CA-AAATTGGT-------A-------AGA-G-GC-ATTTGTTA
gi|10 : aaA-ACAATATTGTGTTTGATAAT--TTTTTCCTAGAAC--TATACACA-GTG--C-AATT---AAGTT-TCTTTTT-------ACTGATAACA------CTT-----T-----ATTTT-T------A-AA--------A-TA-AAAagggggtaggtggagcgtttatat
gi|11 : ttttaggaacaaaaacatttaatt-----TTTTAAAA-AAAA----GCGTTTAACAAA--TGTTTCCCA-AGCA-ATTACACA-TAA--C-ATTC---AGGGC-TCTTTTT-------AATGACAAAA------CAT------------TTTT-T------T-AA--------A-CA-AAAT---T-------G-------ACC-G-GCTGTTTATTaaaaagaccaaaattggtcactgagtaattta
gi|12 : agtttgtttTTTGAATA-G-----TTTTACAA-ACGATATTGTGTTTAATAAA--T----------ACA-AATACACA-TTA--C-AATT---AGGTT-TTTTTTTC------ACTGCTAACA------CTT-----CA----AAACT-T------A-AA--------A-CA-AAtgggggaatacggtaga
gi|13 : cctctacataaatatgatgaaagagTTTGATA-T--TGTTTCACA-A----------C-------C-AGTT---AGATT-TCTTTTT-------ACTGATAACAT-----CTT-----TTTTTAATTTTAT------G-AA--------T-CA-AAATTGGT-------GTGGGTGTGGG-G-GC-ATTGATTAcaaaa
gi|14 : aACACA-TTA--C-AATC---AGGTT-TCATTTT-------ACTGATGATA------ggaagaggttagcatttatttgggg
gi|15 : TTTTAG-T-G-----TGCTACAA-GTAATCCTGTACTTGATAAT--AGTTCCACA-AACA-AATACATA-TCA--C-AACT---AGATT-TCTATTT-------ACAGGTTACA-------TT-----T-----ATATT-T------A-AA--------A-AA-AAAaaaaaaaaaaataaaaataaagaaaaaaaaaaaatcataacaaaattgattgtgtgtgtgtgtgggtgggggttgctattagg
gi|16 : T-----------------TTTTGAA-G-A-----TTTTACTA-ACAAAAC-ATATTTGACAATCATGTTTCACA-ACCA-AATATACA-TTA--C-AATT---AGGCT-TTTTTT---------CTGATAATG------CTT-----A-----A------------A-AA--------A-CA-AAaaatt
gi|17 : ttatTTTAA-G-A-----GTTTACAA-ACAATATTGCGTTTGATACT--TATTTCACA-AACA-AATACACA-TTA--C-AATT---AAGTT-TCTTTTT-------ACTAAAAACA------CTcata
gi|18 : ttggaataaaaATTTTGTTTGATAAT--TGTTTCACA-AACA-AATACACA--CA--T-TATT---AAGTT-Taaaaa
gi|19 : TGTTTAAGAGTG-TGT----CA-AACA-AATACACA-TGA--C-TATA---ATGTT-TCATTTT-------ACTGGTAACA------CTT-----C-----Agacagtttgcaggttcaagatctttttattttatacactc
gi|2 : ATAATCTTGTTTTACA-GATA-AAAACACAATTAGAC-AGTTTGCAGGTT-TCTTTTT-------ACTGCTAACA------CTT-----------A-----C------A-AA--------A-CA-AAA
gi|21 : aataaCAA-AATATCTTGTTTTTGATAGT--TGTTTCACA-AACA-AATACACA-TTA--gataaatgaaaaaaaaaaacaaccaaatttctcggaccaaaattggtggtggttgtgtgggggggggggttattatggggtaatatttatttgtgggagggcaatacagattgtacctgcttttttact
gi|3 : TCATTTT----GGTC-----CTTAAAT---T-----------------TTTTAAA-A-AAAACCTTTGAAGATATAATATTGTTTCAGATAAT--TGTTTGGCA-AACA-AATACATA-TTA--C-AATA---AAGTT-TCATTTA-------ACTGATAACA------CTT-----TTA---ATTTT-T------
gi|4 : TGAATTTTT--AAAAAG-GGG-ATT-ATTTTTGGGGGTC-----------TCACT-----------------TTTTTA----G-----TTTTCAAA-AAAATATT---TTT-ATA-T--TGTTTCAAA-AGCATAATACACA-TTA--C-AATT---TGGTT-TCATTTT-------AATGAT-TTA------CTT-----C-----TTTTT-TTTTTCCA-GA--------C-CA-AAATTGGTGGTAGGGG-------AGA-G-GT-ATTTATTAtttatatatatatatatcggacgaaacttggtgtgtttatgtggtaagggggtctgggagtggtagcacttctccggg
gi|5 : ggtgaTGCCCTTTTTTAAAAGG-GGATGTTCATTTT----GGTC-----CA--AATTTCT-----------------TTTTGAA-GTG-----TGTTACAA-ACGATCTTGTGTTTGATAA---TATTTCACA-AACA-AATACACA-TTA--C-AATA---AGGTT-CCTGTTC-------ATGGACAACA------CTT-----C-----ATAGT-T------ATGA--------A-CACAAATTGGC---------------AGA-GTGC-ATCTACTAggggtggagatgtttatatg
gi|6 : aaaaatacagaattcatTTGATAAT--TGTTTCAGA-AATA-AACACACA-TTA--CTAAAT---AAGT
gi|7 : -G-----TTTTACAA-ACA---TTGTC----ATA------TTTCACA-AGTA-ATTATACA-GTG--T-ATTG---AGGTT-TCTTTTA-------ACTAATAAAAACTT--CTT-----T-----TTTTT-T------A-AATCTCTTGGACCA-AAATTGGT-------G-------TGAGG-GC-ATTTATTAggggtgcctgtttaagttggcagtttgtgggtatccttttcctgataaaaaattctccgaaccacactgttggttggtgacatttattgggggcgtttattcagggaaatacagtattta
gi|8 : agtgcctgtaaatgagta-----------------TTTTTAA-G-G-----TTTTACCA-ACAAAATTGTGTTTAATAAT--TGTTTCACA-AACA-AACACACA-TTA--T-AATT---GAGTGATGTTTATGGATAAAACTGATAAAAAAAAATTTT-----CTAA--ATTTT-C------A-CA--------C-CA-AAATTTGT-------T-------GGG-A-GT-GTTTATTgagggggagcgcttgtacag
gi|9 : TACAA-ACAATATTGTGGTTGATAAT--TATTTCACT-AGCA-TATACAAG-TTA--C-GATC---AGGTT-TAAATTA-------ACTGATAACA------------------------T-T------A-AA--------A-AA-AAATgggggaaatac
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): ATGCATATTTCAAAAAAAGAATGTTTATTTAGGTACCCAAAATATTAAAAAAAAGAAATA
Unaligned ( gi|22 ): GAATACGGTATAGAGTTATACATCTTTTGTATT