lowQualScore : 111 5555555555555555555555555555
lowQualScore : 5 4 66 5 2 6 777 2222222222222222222222222222 3
lowQualScore : . . .. . . . ... ............................ .
lowQualScore : 9 9 77 1 7 0 888 6666666666666666666666666666 0
consensus : CAGGTACATTTCTACACGTTAATCCGTTTAGCAAAATCTATCC-GCTT-TATCGTACATGTGATGACNACTTTAT---------------------TAACTTATCTGTTCTTGTTNGAAAGCCATCAGCTTTA
Reference ( gi|4 ) : CAGGTACATTTCTACACGTTAATCCATTTAGCAAAATCCATCC-ACTT-TGTCGTACATGTGATGAACGCTTTAT---------------------TAAC-TGTCTGTTCTTGTTTGAAAGCCATCAGCTTTA
gi|3 : CAGGTACATTTATACACGTTAATCCGTTTAGCAAAATATATCT-GC-T-AATCGTACCTGTGATGACCACTTTAT---------------------TAACTTATCTGTTCTTGTTGGAAAGCCATCAGCTTTA
gi|2 : CAGGTACATTGATACACGTTAATCAGTTTAACAAAATCTTTCC-GC-T-TATCGTACCTGTGATTACCACTTTAT---------------------TAACTTATCTGTTCTTGTTGAAAAGTCATCAGCTTTAc
gi|12 : CAGGTACATTTCTACACGTTAATCTGTTTAGTAAAATCTATCC-ACTT-TATCGTACATTTGATGAc
gi|11 : CAGGTACGTTTCTACACGTTAATCCATTTTGCAAAATCTATCC-GCTT-TATCATACATGTGGTGAcaac
gi|6 : CAGGTACATTTTCACACGTTAAATCGTTTAGCAAAATCTATCT-GCTT-TATCGTATATGTTATGACAACTTTAT---------------------TAAC-T---------TATCTG----CCACCAGCTTTAcaac
gi|13 : CAGGTACATTTCTTTACGTTAATCCGTTTAGAAAAATCTATCC-GTTT-TATCGTACATGTGATGca
gi|9 : CAGGTATATTTCCACACATTAATCTCTTAAGCAAAATCTCTCT-GCTT-TATCGTACATGTGATGAAAAGTTTAT---------------------AAAccaa
gi|8 : CAGGTATATTTCCACACATTAATCTCTTAAGCAAAATCTCTCT-GCTT-TATCGTACATGTGATGAAAAGTTTAT---------------------AAA
gi|1 : CAGGTAAATTGCTACATGTCAATCCACTTAG-ACAATCTATCCGACTTATAT--TTCATGAGATGACGGCTTTATTTGTTTTACCTTATATTATCATAACTTATTTGTTCTCGTTTTATAGCCAT
gi|14 : AGGTACATTTCTACACGTTAATCCGTTTAGCAAAATCTATCC-GCTT-TATTATACATGTGTTGA
gi|10 : GGTACATTTCTACACGTTCATCCTTTTATCAAAATCCATCC-GCTT-TATCGTACATGTGATGcaac
gi|15 : CATTTATACACGTTATTTCGTTTAGCAAAATTTATCC-GC-T-TATCGTACCTGTGATGACCACTTTccaactgtatca
gi|5 : ATTTATACACGTTAATTCGTTTACCAAAATCTATCC-GC-T-TATCGTACCTGTGATGACCACTTTAT---------------------AAACTTATCTGTTCTTGTTGGAAAGCCATCAGCTTTA
gi|16 : ATTTCTACACGTAAATCCGTTTAATATAATTTATTC-GACT-TACTATACGTGTGATGAca
gi|7 : TTAATCCGTTTAGCAAAATCTATCC-GCTT-TATCGTACATGTGATGACAACTTTATA--------------------TACC-TATCTCTTCATGTTTGAAAGCCACCAGCTTTAcagct
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): GTGATCCACAACTTTAATATGATACATGTACTATAAATTCACGAAACATCTTA
Alignments
lowQualScore : 3333333333333333333333
lowQualScore : 0 1 6666666666666666666666 0 0 3
lowQualScore : . . ...................... . . .
lowQualScore : 2 0 9999999999999999999999 1 7 0
consensus : CAGGTACATTTCTACACGTTAATCCGTTTAGCAAAATCTATCCGCTTTATCGTACATGTGATGACAACTTTAT---------------------NAACTTATCTGTTCTTGTTNGAAAGCCATCAGCTTTA
Reference ( family-730 ) : CAGGTACATTTCTACACGTTAATCCGTTTAGCAAAATCTATCCGCTTTATCGTACATGTGATGACNACTTTAT---------------------TAACTTATCTGTTCTTGTTNGAAAGCCATCAGCTTTA
gi|1 : CAGGTAAATTGCTACATGTCAATCCACTTAG-ACAATCTATCCGACTTATATTTCATGAGATGACGGCTTTATTTGTTTTACCTTATATTATCATAACTTATTTGTTCTCGTTTTATAGCCAT
gi|10 : GGTACATTTCTACACGTTCATCCTTTTATCAAAATCCATCCGCTTTATCGTACATGTGATGCCAACTGTAT---------------------CA
gi|11 : CAGGTACGTTTCTACACGTTAATCCATTTTGCAAAATCTATCCGCTTTATCATACATGTGGTGACAAC
gi|12 : CAGGTACATTTCTACACGTTAATCTGTTTAGTAAAATCTATCCACTTTATCGTACATTTGATGACAAC
gi|13 : CAGGTACATTTCTTTACGTTAATCCGTTTAGAAAAATCTATCCGTTTTATCGTACATGTGATGCCAA
gi|14 : AGGTACATTTCTACACGTTAATCCGTTTAGCAAAATCTATCCGCTTTATTATACATGTGTTGACAAC
gi|15 : CATTTATACACGTTATTTCGTTTAGCAAAATTTATCCGC-TTATCGTACCTGTGATGACCACTTT
gi|16 : ATTTCTACACGTAAATCCGTTTAATATAATTTATTCGACTTACTATACGTGTGATGACAGCT
gi|2 : CAGGTACATTGATACACGTTAATCAGTTTAACAAAATCTTTCCGCTT-ATCGTACCTGTGATTACCACTTTAT---------------------TAACTTATCTGTTCTTGTTGAAAAGTCATCAGCTTTA
gi|3 : CAGGTACATTTATACACGTTAATCCGTTTAGCAAAATATATCTGCTA-ATCGTACCTGTGATGACCACTTTAT---------------------TAACTTATCTGTTCTTGTTGGAAAGCCATCAGCTTTAc
gi|4 : CAGGTACATTTCTACACGTTAATCCATTTAGCAAAATCCATCCACTTTGTCGTACATGTGATGAACGCTTTAT---------------------TAAC-TGTCTGTTCTTGTTTGAAAGCCATCAGCTTTAc
gi|5 : ATTTATACACGTTAATTCGTTTACCAAAATCTATCCGCTT-ATCGTACCTGTGATGACCACTTTAT---------------------AAACTTATCTGTTCTTGTTGGAAAGCCATCAGCTTTA
gi|6 : CAGGTACATTTTCACACGTTAAATCGTTTAGCAAAATCTATCTGCTTTATCGTATATGTTATGACAACTTTAT---------------------TAACTTATCT--------------GCCACCAGCTTTAca
gi|7 : TTAATCCGTTTAGCAAAATCTATCCGCTTTATCGTACATGTGATGACAACTTTAT---------------------ATACCTATCTCTTCATGTTTGAAAGCCACCAGCTTTAca
gi|8 : CAGGTATATTTCCACACATTAATCTCTTAAGCAAAATCTCTCTGCTTTATCGTACATGTGATGAAAAGTTTAT---------------------AAAca
gi|9 : CAGGTATATTTCCACACATTAATCTCTTAAGCAAAATCTCTCTGCTTTATCGTACATGTGATGAAAAGTTTAT---------------------AAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GTGATCCACAACTTTAATATGATACATGTACTATAAATTCACGAAACATCTTA
Alignments
lowQualScore : 3333333333333333333333
lowQualScore : 0 5555555555555555555555 0 0 3
lowQualScore : . ...................... . . .
lowQualScore : 2 0000000000000000000000 1 7 0
consensus : CAGGTACATTTCTACACGTTAATCCGTTTAGCAAAATCTATCCGCTTTATCGTACATGTGATGACAACTTTAT---------------------NAACTTATCTGTTCTTGTTNGAAAGCCATCAGCTTTA
Reference ( family-730 ) : CAGGTACATTTCTACACGTTAATCCGTTTAGCAAAATCTATCCGCTTTATCGTACATGTGATGACAACTTTAT---------------------NAACTTATCTGTTCTTGTTNGAAAGCCATCAGCTTTA
gi|1 : CAGGTAAATTGCTACATGTCAATCCACTTAG-ACAATCTATCCGACTTATATTTCATGAGATGACGGCTTTATTTGTTTTACCTTATATTATCATAACTTATTTGTTCTCGTTTTATAGCCAT
gi|10 : GGTACATTTCTACACGTTCATCCTTTTATCAAAATCCATCCGCTTTATCGTACATGTGATGCCAACTGTAT---------------------CA
gi|11 : CAGGTACGTTTCTACACGTTAATCCATTTTGCAAAATCTATCCGCTTTATCATACATGTGGTGACAAC
gi|12 : CAGGTACATTTCTACACGTTAATCTGTTTAGTAAAATCTATCCACTTTATCGTACATTTGATGACAAC
gi|13 : CAGGTACATTTCTTTACGTTAATCCGTTTAGAAAAATCTATCCGTTTTATCGTACATGTGATGCCAA
gi|14 : AGGTACATTTCTACACGTTAATCCGTTTAGCAAAATCTATCCGCTTTATTATACATGTGTTGACAAC
gi|15 : CATTTATACACGTTATTTCGTTTAGCAAAATTTATCCGC-TTATCGTACCTGTGATGACCACTTT
gi|16 : ATTTCTACACGTAAATCCGTTTAATATAATTTATTCGACTTACTATACGTGTGATGACAGCT
gi|2 : CAGGTACATTGATACACGTTAATCAGTTTAACAAAATCTTTCCGCTT-ATCGTACCTGTGATTACCACTTTAT---------------------TAACTTATCTGTTCTTGTTGAAAAGTCATCAGCTTTA
gi|3 : CAGGTACATTTATACACGTTAATCCGTTTAGCAAAATATATCTGCTA-ATCGTACCTGTGATGACCACTTTAT---------------------TAACTTATCTGTTCTTGTTGGAAAGCCATCAGCTTTAc
gi|4 : CAGGTACATTTCTACACGTTAATCCATTTAGCAAAATCCATCCACTTTGTCGTACATGTGATGAACGCTTTAT---------------------TAAC-TGTCTGTTCTTGTTTGAAAGCCATCAGCTTTAc
gi|5 : ATTTATACACGTTAATTCGTTTACCAAAATCTATCCGCTT-ATCGTACCTGTGATGACCACTTTAT---------------------AAACTTATCTGTTCTTGTTGGAAAGCCATCAGCTTTA
gi|6 : CAGGTACATTTTCACACGTTAAATCGTTTAGCAAAATCTATCTGCTTTATCGTATATGTTATGACAACTTTAT---------------------TAACTTATCT--------------GCCACCAGCTTTAca
gi|7 : TTAATCCGTTTAGCAAAATCTATCCGCTTTATCGTACATGTGATGACAACTTTAT---------------------ATACCTATCTCTTCATGTTTGAAAGCCACCAGCTTTAca
gi|8 : CAGGTATATTTCCACACATTAATCTCTTAAGCAAAATCTCTCTGCTTTATCGTACATGTGATGAAAAGTTTAT---------------------AAAca
gi|9 : CAGGTATATTTCCACACATTAATCTCTTAAGCAAAATCTCTCTGCTTTATCGTACATGTGATGAAAAGTTTAT---------------------AAA
blockSeqs : C G
blockSeqs : T G
blockSeqs : T T
blockSeqs : T G
blockSeqs : A T
blockSeqs : T .
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqCons : N*********************
originalCons : CAGGTACATTTCTACACGTTAATCCGTTTAGCAAAATCTATCCGCTTTATCGTACATGTGATGACAACTTTAT---------------------NAACTTATCTGTTCTTGTTNGAAAGCCATCAGCTTTA
finalCons : CAGGTACATTTCTACACGTTAATCCGTTTAGCAAAATCTATCCGCTTTATCGTACATGTGATGACAACTTTATN---------------------AACTTATCTGTTCTTGTTNGAAAGCCATCAGCTTTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GTGATCCACAACTTTAATATGATACATGTACTATAAATTCACGAAACATCTTA
Alignments
lowQualScore : 3333333333333333333333
lowQualScore : 0 5555555555555555555555 0 0 3
lowQualScore : . ...................... . . .
lowQualScore : 2 0000000000000000000000 1 7 0
consensus : CAGGTACATTTCTACACGTTAATCCGTTTAGCAAAATCTATCCGCTTTATCGTACATGTGATGACAACTTTAT---------------------NAACTTATCTGTTCTTGTTNGAAAGCCATCAGCTTTA
Reference ( family-730 ) : CAGGTACATTTCTACACGTTAATCCGTTTAGCAAAATCTATCCGCTTTATCGTACATGTGATGACAACTTTAT---------------------NAACTTATCTGTTCTTGTTNGAAAGCCATCAGCTTTA
gi|1 : CAGGTAAATTGCTACATGTCAATCCACTTAG-ACAATCTATCCGACTTATATTTCATGAGATGACGGCTTTATTTGTTTTACCTTATATTATCATAACTTATTTGTTCTCGTTTTATAGCCAT
gi|10 : GGTACATTTCTACACGTTCATCCTTTTATCAAAATCCATCCGCTTTATCGTACATGTGATGCCAACTGTAT---------------------CA
gi|11 : CAGGTACGTTTCTACACGTTAATCCATTTTGCAAAATCTATCCGCTTTATCATACATGTGGTGACAAC
gi|12 : CAGGTACATTTCTACACGTTAATCTGTTTAGTAAAATCTATCCACTTTATCGTACATTTGATGACAAC
gi|13 : CAGGTACATTTCTTTACGTTAATCCGTTTAGAAAAATCTATCCGTTTTATCGTACATGTGATGCCAA
gi|14 : AGGTACATTTCTACACGTTAATCCGTTTAGCAAAATCTATCCGCTTTATTATACATGTGTTGACAAC
gi|15 : CATTTATACACGTTATTTCGTTTAGCAAAATTTATCCGC-TTATCGTACCTGTGATGACCACTTT
gi|16 : ATTTCTACACGTAAATCCGTTTAATATAATTTATTCGACTTACTATACGTGTGATGACAGCT
gi|2 : CAGGTACATTGATACACGTTAATCAGTTTAACAAAATCTTTCCGCTT-ATCGTACCTGTGATTACCACTTTAT---------------------TAACTTATCTGTTCTTGTTGAAAAGTCATCAGCTTTA
gi|3 : CAGGTACATTTATACACGTTAATCCGTTTAGCAAAATATATCTGCTA-ATCGTACCTGTGATGACCACTTTAT---------------------TAACTTATCTGTTCTTGTTGGAAAGCCATCAGCTTTAc
gi|4 : CAGGTACATTTCTACACGTTAATCCATTTAGCAAAATCCATCCACTTTGTCGTACATGTGATGAACGCTTTAT---------------------TAAC-TGTCTGTTCTTGTTTGAAAGCCATCAGCTTTAc
gi|5 : ATTTATACACGTTAATTCGTTTACCAAAATCTATCCGCTT-ATCGTACCTGTGATGACCACTTTAT---------------------AAACTTATCTGTTCTTGTTGGAAAGCCATCAGCTTTA
gi|6 : CAGGTACATTTTCACACGTTAAATCGTTTAGCAAAATCTATCTGCTTTATCGTATATGTTATGACAACTTTAT---------------------TAACTTATCT--------------GCCACCAGCTTTAca
gi|7 : TTAATCCGTTTAGCAAAATCTATCCGCTTTATCGTACATGTGATGACAACTTTAT---------------------ATACCTATCTCTTCATGTTTGAAAGCCACCAGCTTTAca
gi|8 : CAGGTATATTTCCACACATTAATCTCTTAAGCAAAATCTCTCTGCTTTATCGTACATGTGATGAAAAGTTTAT---------------------AAAca
gi|9 : CAGGTATATTTCCACACATTAATCTCTTAAGCAAAATCTCTCTGCTTTATCGTACATGTGATGAAAAGTTTAT---------------------AAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GTGATCCACAACTTTAATATGATACATGTACTATAAATTCACGAAACATCTTA