lowQualScore : 1111111111111111111111111111
lowQualScore : 1111 1 3333333 33333333333 11 11 22 11111 11111 2222 1 1 1111111 2222 1111 11 11 7777777777777777777777777777777777777777 1111111 111111 222222 222222 11 1111 1 222222 1111 222 1111111111111 222 1 2222 1 1 3333333333333333333 1 111 1 1111 1111 333333333333 222 22 5555555 1 1 2222222 2 2222222222222222222222222222
lowQualScore : 6 7777 66 2 2 1111111 5 2 44444444444 33 2 0 9 2 66 55 2 33 3 0 777 8888 6 11 66 77777 3 888 99999 5 5 5 6 7 5 0 66 5 0 66 3333 5 5 1 6 3 1 1 1 5 7 1 3 8 5 0 3 8888888 5555 0000 888 66 3 66 5 55 5 1 55 5 2 9999999999999999999999999999999999999999 5 5 5 8888888 1 444444 99 5 7 0 1 3 55 99 2 0 1 8 8 8 55 000000 1 7 44 1 555555 1 1 44 22 6 2 2 3 4 55 9999 8 1 1 333333 5 1 1 7777 8 555 0 3 8 8888888888888 1 888 6 0000 3 3 8 0 3 6 3 6 2 6 6 7777777777777777777 55 99 3 0 99 8 222 3 8 5 2 0 9999 3 2 1111 0 2 1 0 222222222222 4 666 4 88 0 44 4 1 9999999 77 9 0 6 77 1 2 2 3 6 1111111 0 444 9999999999999999999999999999 77
lowQualScore : . .... .. . . ....... . . ........... .. . . . . .. .. . .. . . ... .... . .. .. ..... . ... ..... . . . . . . . .. . . .. .... . . . . . . . . . . . . . . . . ....... .... .... ... .. . .. . .. . . .. . . ........................................ . . . ....... . ...... .. . . . . . .. .. . . . . . . .. ...... . . .. . ...... . . .. .. . . . . . .. .... . . . ...... . . . .... . ... . . . ............. . ... . .... . . . . . . . . . . . ................... .. .. . . .. . ... . . . . . .... . . .... . . . . ............ . ... . .. . .. . . ....... .. . . . .. . . . . . ....... . ... ............................ ..
lowQualScore : 0 8888 99 6 9 7777777 4 9 11111111111 99 9 1 6 9 99 77 5 88 1 3 000 5555 2 44 99 55555 0 888 44444 0 1 0 0 2 0 2 99 0 1 55 4444 0 0 7 7 0 7 4 9 0 1 9 7 9 7 4 0 6666666 4444 6666 888 99 2 99 0 11 0 4 11 7 2 3333333333333333333333333333333333333333 7 7 7 6666666 4 666666 66 3 9 3 8 3 00 22 5 3 0 0 2 0 22 222222 0 4 66 4 666666 4 8 66 44 5 5 5 5 0 66 0000 0 4 2 000000 0 0 4 0000 0 000 8 2 0 2222222222222 0 000 0 0000 2 2 6 8 3 7 3 7 5 0 0 0000000000000000000 44 00 6 8 44 0 444 0 0 6 5 0 8888 2 5 0000 2 2 2 2 888888888888 0 000 7 00 7 00 7 0 0000000 77 7 7 7 77 0 7 7 7 0 0000000 0 555 0000000000000000000000000000 00
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCAAATA--TAGATAAG--ATAAGATATTGTTTATTATT-GTGACATGTGCATACATTCATTANGTTATACAT-A------T----ATA--CA-ATTGACAAA-ATTATNTGGCACC-CGGCCC-ATTGG-GCCTATATGTCACCAGGATAATCAAGAAAG---TAAT----TATATACANAATTCGTAAATACTGCTATTATATA--CA--TAGGTTAACTATGACGTACA---AA----A-TCCTGACAAAATATTAGTAAAA-TATTCCCTGTGTATCCAAT-ATTGTCAGTATGG--AGTGT-AGTTATGATAGATATGTT-ATAAATACA-ATAGGAAA-ACAGGCAATANATCATACATCAACAATACATGAGGTATTAAGTCTGACATAATAGTTNACGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGACAAGAAACTTTGCAAGTTGTCTTGGATGCGCTGATATGATATGTGNAAGT-CGCTGGTTTA-------TATG-C--ATG----TAA---GC--ATTA--TTTACAAA-TAAATC-TCTGAAATN-GTTTTCTCGCAG-GTCATTATA-------CAG-------T-------G------A-------A-AT-AGAAAGTGT-T-------TCTCATCTTC---NA-CT-GAATTTGACTGACAAAGTCTACAAAGTCTCTGNTCNGG--TTGCTCNCCGACATACCTTCCGGTTTCAATTC-TNAGT-GGTAAGATACCANNTCTAAATTGACACAANANAGAGCGTTCN-TGTCTTGTTTAAGTTCATNACAACGTANTNCTCGNATTCAAANTTNTCCTTAAACAGGCGATAT-G--TTCT-CAGTTTTGATATNCTT------TGAACGTCTTCTGACCAGACATTAGAATAATA----GTT-TACTAG---TAATCCATGTGCT-TGTG-ATGAGTCAATAATTGTTCTGTTTTCAAAGTAATTTGTCGGAT---AACCCCAGCGTAGACATAAC-GTGTTTAANATCA-TGTGACCAATTATTTTTGCA----CT--TTAAA----TAGTCGGAATTAAACACTTTTTTTCGT-AATCCGTCTGTCATCCATCAAAATCACTCTGTTCCA-CATACGCAACATGTTTNCCCATCGTCTGTAAACACTTGGTATCCA-CCCG---GTGTCCCCGATCATCGCGAGAATTGGCGT------GAANCNATGNACGCCAAGAAAGTANCGCATAGCTCGATTCTGNACGTTGTC---CGT-TTGATACTGTTTGAATCCCCATACTGATGCGCAGTAGTCNAGGATCGGCACAANACACGANTCGNANAGTCTTTTCGNAG--TTCGANNTCTTTTCCAGGAGNATAAGTNNTTTAT
Reference ( gi|1 ) : TGATTATGTCTATTGATTATGTCATTAACAAGCGATCTTGCTTTCTGCCTAAATGGTCATCCGTGTCCAAATA--TAGATAAG--ATTAGATATTGTTTATTATT-GTGACATGTGCATACTTTCTTCAAGTTATACAT-A------G----ATA--CA-ATTGACACA-ATTATTTGGCACC-AGACCC-TTTGG-GCCTATATGTCACCAGGATAATCAAGAAAG---TAAT----TATATACAAAATTCGTAAATACT-TTATTATATA--CA--TTGGTTAACTATGACGTACA---AC----A-TCCTGACAAAATATTGGTAAAA-TGTTCCCTGAGTATCCAAT-ATTGTCAGTATGG--AGTGT-AGTTATGATAAGTTTGTT-ATAAATATA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGAGGTATTAAGTATGACATAATAGTTTACGAAAACAAGATATTTCTTCTTTTTAAGGAAGCACAGACAAGAAACTTTGCAAGTTGTCTTGGATGCGCTGATATGATAGGTGGAAGT-CGCTGGTTTA-------TATG-A--ATG----TAA---GC--ATTA--TTTACAAA-TAATTC-TCTGAAATA-GTTTTCTCGCAG-GTTATTATA-------CAG-------T-------G------A-------A-AT-AGAAAGTGT-T-------TTTCATCTTC---TA-CT-AAATTTGACTGACAAAGTCTACAAAGTCTCTGATCAGG--TTGCTCCCCAACATACCTTCCGGTTTCAATTC-TGAGT-GGTAAGATACCAGTTCTGAATTGACACAATACAGAGCGTTCA-T-T-TTGTTTAAGTTTATCATAACATAGTCCTCACATTTAAATTTTTCCTTAAACAGGCGATAT-A--TTCT-CAGTTTTGATATACTT------TGAACGTCTTCTGACCAGACATTAGAATAATA----GTT-TACTAG---TAATCCATGTGCT-TGTG-ATAAGTCAATGATTGTTCTGTTTTC---GTAATTTG-CAGAT---AACCCCAGCATACACATAAC-GTGTTTAATATCA-TGTGACTAATTATTTTTGTA----TT--TTAAA----AAGTCGAAAGTAAACACTTTTTTTTGT-AATCCGCCTGTCATCCATCAAAATCACTTTGTTCCA-CATACGCAACATGTTTCCCCATCGTCTGTAAACACTTGGTATCCA-CCCG---ATGTCCCCAATCATCGCAAGAATTGGCGT------GAAGAGATGAACACCAATACAGTATCTTATGGCTCTTTTCTGAACATTATC-TTTATGTTGATACTTCTTGAATCTCCACACTGAGGAGCAATAGTCAAGGATAGGCACAACACATGATGTGTACAGT-TTTTCGTAGGATTTGAACTCTTT---AAGAGTAT--GTATTTTATCTATAATTCCACCAAGTGCACGGCCTGCTGCTTTCCCGAGCGATTCACTAGTGTACATTAAGTGGTTCTTTTCATGGAAAATAACCCCTAGATATTTGTATA
gi|2 : TTCAAACA--T---TAAG--ATAAGATATTGTTTATTATT-GTGACATGTGCATACATTCATTAAGCTATACAT-A------T----ATA--CA-ACTGACACA-CTTATTTGGCACC-CGGTTC-ATTGG-GCCTATATGTCAATAGGATAATATAGAAAG---TAAT----TATATACAAAATTCGTATATACT-GTATAATATA--CA----GGTTAACTATGACATAC----AC----AGTCCTGACAAAATATAAGCAAAA-TATTCCCGGAGTATCCAAT-ATTGTCAGTATTG--AGTCT-AGTTATGATAGATATGAT-ATAAATACA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGAGGTATTAAGTCTGACATAATAGTTGGCGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGATAAGAAACTTTGCAAGTTGTCTTGAATCCGCTGACATGATATGTGGAAGT-CGCTGGTTTA-------TATA-C--ATG----TAA---GC--ATTA--TCTACAAA-TAAATC-TCTGAAATT-GTTTTCTCGCAG-GTCATTATA-------CAGTTTACACT-------G------A-------A-AT-AGAAAGTGT-T-------TCTCATTTTC---TA-CT-GAGTTTAACTGACAAAGTCTACAAAGTCTCTAATTAGG--TTGTTCCCATATAAATCTTCCGGTTTCAATTC-TCAGT-GGTAAGATACCAGTTC-----TGACAAAATACAGAGCATGCA-T-TCTTATTTAAGTTCATCATAACGTAGTCCTCGCATTTGATGTGTTTCTTAAACAGGCGATAT-G--TTCT-CTGATTTGATATACTT------TGAACGTCTTCTGACCAGACATTAGAATTATA----ATT-CACTAG---TAATCCATGTGCT-TATG-ATGAGTCAATTATTGTTCTGTTTTC---GTAATTTG-CGGAT---TACCCCAGCGCAGACATTAC-GGGTTTAAAATCA-TGTGACCAATTATTTTTGCA----CA--TTAAA----TAATCGAAATTAAACAC-CTTTTTCGT-AATCAGTCTGTCATCCATCAAAACCACTTTGTGACC-CATATGCAACATGTTTCCCCATCGTCTGCAAACACTTGGTATCCA-CCCG---GTATCCCCAATCATCTCGAAAATTGGCGT------GAAACGATGAATA
gi|9 : caattatacattctattttttatgtacgtcacatattcttatttgttaaaattattatAAATAAGTAAGTAAGTAAGTAAATATT--TTATTAAA-GTGACATGTGCATACAATAT--ATGTTACAAAT-A------GTTGTATA--CA-A---ACAAA-AACA---AGCACC-CGGCCC-ATTGG-ACCTATAAGTCACC
gi|7 : aacagggttatttaaagcaaaaaatagtgtttgactagaaaggcattgttttagaacatttgaagaaacaaaatcacacaaacgactgaaataaactaattatagtttaatgttaaacatacgttttgttttattttctaacaaacgatttttggttataatattgtgtaacagttgcagtttcaatgttattactagccgttccaagacgacgatggtctttgttaccatgtcctctgtttacagatatagaaatgctactttatgtgttacaaatatttaaaaataattacaaattgtttcataaaatgtctcacgtgataaataaatatattggatgtATA---AGAGAAG--AG-AAATATTGTTTAT-ATTCGT--TATGT-TATAC---ATACAAATTAT-CAT-A------C----ATA-----ATTGACAAA-ATTATATGGCACCCGGACCA-TTTGA-ATTTATATGCCACCAGGTTATTCAAGAGAG---TAATAAACTATATATACCATTCGTAAATACTGTTAGTATATAGTTAACTTATTTAACTATGAAGTTCA---AA----C-TCCTGACTAAGTATTTGCAAAAATATTCCCTGTGTATTTGAC-ATTGTTTGTATGA--ACGGT-AATTATGGTAAATTTGTT-ATAAATACA-ATAAGACT-ACTTGCAATAGTTCATACATCAACAATACA-----------GTATGACATAATAGTTGACGAAGACAAGATATTACATCTTTTTAAGAAAGCACAGACAAGACATTTTGCAAGTTTTCTTGGATGCGCCGATATAATCTGTGAGACT-C-CTGGTTTA-------TATGTAGCATG----TTA---GC--AATA--TCTACAAA-TAAATC-TCTGAAATA-GTTTTCTCGCAG-GCCATTATA-------CAGTTCACACT-------G------A-------A-AT-AGGAAGCGC-T-------TCGTATCTTCTTGTA-CTCAAATATCA--GACAAta
gi|11 : TA--TAGATGAG--ATAAGATATTGTTTATCATT-GTGACATGTGCATACATTCATTAAGTTATACAT-A------T----ATA--CA-ATTGACAAA-ATCATTTGGCACC-CGGCCA-TTTCG-GCCTATATGTCACCAGGATAAT---GAAAG---TAAT----TATATACACAATTCGTAAATACT-CTATTATATA--CA--TAGGTTAACTATGATGTACA---AA----A-TCCTGACAAAATATTGGTAAAA-TATTCCCTGAGTATCCAAT-ATTGTCAGTATGG--AGTGT-AGTTATGATAGATATGTT-ATAAATATATATA
gi|22 : tgtaaaagtAGATATG--ATAAGATATTGTTTATCATT-GTGACATATGCATACATTCATTATTTTATGCGT-ATATTATT----ATA--CA-GTTGACAAA-ATTATATGGTAAC-TGGCCCATTTGG-GTTTATATGTCACCAGGGTCATCAAGAAAC---TAAG----TAtatccaatcatggttccaatatttaacatattaaactaatttgataaaaatatgataatt
gi|12 : GATAAG--ATACGATATTGTTTATTATT-GTGACATGTGCATACATTAATTATGTCGTACAT-A------T----ATA--CA-ATTGACAAA-GTTATTTGACACC-CTGCCC-ATTGG-TCCAGTTTGTCATCAGGTTAAACAAGAAAG---TATT----TATATACACAGTTCACAAGTACTGCTATTGTATA--CA--TAGGCTAACTATGAAGCATA---AA----A-TGCTGACAAAATATTAGTAAAA-TATTCCCTGTGTGTATAATAATTTT---TATAGTTCGTGTGAGCGAT--TA----TGTT-ATAAATACA-CTA--AAATGCAGGCAGTAGATCAAACCTTATCAATACATGAAGTATTAAATCTGACATAATAATGTGCGAAAACA
gi|21 : GATAAG--ATCAATTATTGTTTATTATT-GTGACATGTGCACACATTCATCATGTTATATAT-A------T----ATA--TATATATATACA-ATT----GACA---AAAGTT-TATGGCACTTATATGTCGCCAAGATAATCAAGAAAGTTATAAT----TAT-------ATTC-TAAG-----GTATTATTTA--CA--GTTATTAACT
gi|6 : AG--ATAAGATACTGTTTATTATT-GTGACATGCG---ACATTCATTATGTTGTACAT-A------T----ATA--CA-ACTGATA-A-AT-ATATGGCACC-CAGCCC-ATTGG-GCTAATATGCCACCAGATTAATCAAGAAAG---TAAT----TATATAGATGATTCGTGAATACTGCTATGATATA--CA--TATGTTAACTTTTAAGTACATGTACGTAAA-TGCTGACAAAATATTAGCAAAA-TATTTC-TGTGTATTTAAT-ATTGGTAGTATGG--ACGAT-AGTTATTGTAATTTTTTTTATAAATATA-ATAAGAAT-ATTGACAATAGATCATACATCAACAAAACATGAACTATAAAGTCTGACGTAATAGTTTACAAAAACATCACATTTCTCCTTTTTATGAAAGCACAGACAAACAA------AGGTTTTCTCGGATGCGCTGATATGATATGTGAAAGT-CGGT-GTTTA-------TATG-C--ATG----TTA---GCAAATTAATCTTA-AAA-TA--TC-TAT---ATA-GTT
gi|25 : tTACATATT--TTATTAAT-GTGACATGTGCAT-----------GATATACAT-G-------------A--CA-A-TAACACG-ATggcaaacgccattttctgtttcgttgactgcaattagtatttgccttactaagttctatatctgaccctgaaaagtgcaca
gi|23 : gtaagtaaaTATTGTTTATCATT-GTAACAT-T---CACTAT------GTTAAACAT-A------ATTATATA--CA-ATTGACAAA-ATTATATGGCATC-CGACCA--TTGG-GCCTTTATGCCACCAGCATATGTAAAAGGA---CATT----TATATacaaataagaaaataataaatatcacctggtccactgcgcttttcggtcatataattatggaatagtt
gi|4 : GTTTATTATT-GTGACATGTGCATACATTCATTAAGTTATACAT-A------T----ATA--CA-ATTAACAAA-ATTATTTGGCACC-CGGCCC-ATTGG-GCCTATATGTCACCAGGATAATCAAGAAAG---TAAT----TATATACAAAATTCGTAAATACT-CTATTATATA--CA--TAAGTTAAATATGACGTACA---AA----A-TCCTGACAAAATATTAGTAAAA-TATTCACTGAGTATCCAGT-ATTGTCAGTATGG--AGTGT-AGTTA---------------TAAATATA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGATGTATTAAGTTTGACATAATATTTTACGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGAGAAGAAACTTTGCAAGTTGTCTTGGATGCGCTGATATGATATATGCAAGT-CGTTAGTTTA-------TATG-C--TTG----TAA---GC--ATTA--TTTACAAA-TAAATC-TCTGAAATT-GTTTTCTTGCAG-GTCATTATA-------CAG-------T-------gaatatcccctttcaatattg
gi|37 : TTTATTATT-GTGACATGTGCATACATTCATTAAGTTATACAtcacactgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccttaaaaaggcgatatgttctcagttttaatattctttgaacgtcttctgaccagacattagaataatagtttactagtaatccatgtgcttgtgataagtcaataattgttctgttttcgtaatttgcggataaccctagcatagacataacgtgtttaatatcatgtgaccaattatttttgcacattaaatagtcggaatttaacacttttttgtaatccgtctgtcatccatcaaaatcactctgttccacatacgcaacatgttt
gi|20 : TTATTATA-GTGACATGTGCAAA--TGCATAACATTATATAT-A------A----ATATGCA-ATTAACACAGAACA-----CACC-CGGCCC-AATGG-ACCTTTAAGTCACCattgtatttattgaaaatcatt
gi|3 : TT-GTGACATGTGCGTACATTTATTAAGTTATACAT-A------T----ACA--CA-ATTGACAAA-ATTATTTGGCACC-CGGCAC-ATTGG-GCCTATATGTCACCAGGATAATCAAGAAAG---TAAT----TATATACAAAATTCGTAAATACT-CTATTATATA--CA--TAGGTTAACTATGACGTACA---AA----A-TCCTGACAAAATATTAGTAAAA-TATTCCCTGTGTATCCAAT-ATTGTCAGCATGG--AGTAT-AGT-ATGATAGATATGTT-ATACATATA-ATAGGAAA-ACAGGCAATATATCATAAATCAATACTACATGAGGTATTA-------------------CGAAAACAAGGTATTTCTTCTTTTTAAGAAAACACAGACAAGAAACTTTGCAAGTTGTCTTAGATGCGCTGATATGATATGTGCTAGT-CGTTGGTTTA-------CATG-T--ATG----TAA---AC--ATTA--TTTACAAA-TAAATC-TCTGGAATT-GTTTTCTCGCAG-GTCATTACA-------CAG-------TTAACACTG------A-------A-AT-AGAAAGTGT-T-------TT-CATCTTC---TA-CT-GAATTTGACTGACAAAGTCTACAAAGTCACTGATCAGG--TTGCTCCCCAACATACCTTCCGGTTTCAATTC-TGAGT-GGCAAGATACTAGTTCTAAATTGACACAAAACAGAGCGTCCA-T-TCTTGTTTAAGTTCATCATAATGTAATCCTCACATTTAAAATTTTCCTTAAACAGGCGATGC-G--TTCT-CAGTTTTGATATACTT------TGAACGTCTTCTGACCAGACATTAGAATAATA----GTT-TACTAG---TAATCCATGTGCT-TGT--------TAATAATTGTTCTGTTTTC---GTGATTTG-CGGAT---AACCCCAGCATAGACATAAC-ATGTTTAATATCA-TGTGACCAATTATTTTTGCA----CT--TTAAA----TAGTCGGAATTAAACACTTTT-TTTGT-AATCCATCTGTACTCAATCAAAATCACTCTATTTGA-CATACGCAACATGTTTCCCCATCGTCTGTAAACACTTGGTATCCA-CCCG---GTGTCCCCAACCATCGCGAGAATTGGCGT------GAAGCGATGAACACCAAGAAAGTATCTCATGGCTCTATTCTGAACATTATC-TATATGTTGATACTTCTTGATACACCACACTGAGGAGGAATAGTCGAGGATGGGCACAATACAtatatgaatgtacatacacatataccctaatgtactatatattaagcatgcttgaaataatacatgtttgattacaattcgatataacagtttgtgcatttcgtctgtttgaaactggtt
gi|30 : GTTATACATTA------T----GTA--CA-ATTTACAAA-ATTGTATGGCACC-CAGCCC-ATTGG-GCCTCTATGTCACC
gi|32 : acaacaatacttacaacattgtgtttataaatggtaaaaaatgctttgatGTACA---AA----A-TCCTGATAAAATATTAGTAAAA-TATTCACTGTGTATTTAAT-ATTGTCAGTATGG--ACGGT-AATTTTGTTAAGAATGTT-ATAAATACA-ATAGAA
gi|31 : CATCAACAATATATCAGGTATTAAGTCTGATATAATAGTTAACGAAAACAAGACATTTCTTCTTTTTAAGAAAGCAGAGACAAGAAAC
gi|8 : TACTTCTTCTTCTCATGTAAGCATATACAATATATTTAGCTACTTTTCTGGGA-ACG-TG-TGTGACAAG---AAATACAC--ATTTAGCCATACTATC-C--ATACCATTAAACTGC--AT-A--TTTGAAAA-TTGTTCATTCAAAAT--GTCTGCT-GTAATATCATTGTA-------AAA-------T-------GTACATTA-------G-ATCAAAAAATGA-T-------TTTCATCTTC---AATCT-GAAGTAGATT-ACAAATTGTGCAGAGTCTTTGCTCTCG--CGGCTCACCGACATATCGTCCCGTTTCTATTC-TTAGT-GGTA--------------AATTGGGCCAACAATGAACGTTCC-TGT-TTGCTCAAATTTAAAAGCACATATTGTTCGAATTCAAATTTATCTTTAA--AAGTTACAT-AAGTCCG-TAATTTAGGCACTCTTACTACATAAAC--CTT----CCAGATATTTGAGTAGTA----TTC-CGTTAGCT-TAGTCTAAACAAT-TTTT-ATGTGT--ATAACAGTTTTGTTTTCAAAATAGTTTATCAGAT------TCGAAT-TGGACATAACTGT-TTTCAGATCA-CTACACCAATTACTTTgtgtttaattgtt
gi|16 : TTTTTTCTTTTTAAGAAAGCACAGACAAGATACTTTGCAAGATGTCTTGGATGCGCTGATATGATATGTGCAAGT-CGTTGATTTA-------TATG-C--TTG----TAA---GC--ATTA--TTTACAAA-AAAT-C-TCTGAAATT-GTTTTCTCGCAG-GTCATTATA-------CAG-------TTCACACTG------A-------A-AT-AGAAAGTGT-T-------TTTCATCTAC---TA-CT-GAATTTGACTGACAAAGTCTACAAAGTCTCTGATCAAG--TTGCTCCCCAACATACCTTCCGGTTTCAATT
gi|7 : GCGCATCCAAGAAAACTTGCAAAATGTCTTGTCTGTGCT
gi|17 : ataagagaagagaaatattgtttatattcgttatgttatacatacaaattatcatacataattgacaaaattatatggcacccggaccatttgaatttatatgccaccaggttattcaagagagtaataaactatatataccattcgtaaatactgttagtatatagttaacttatttaactatgaagttcaaactcctgactaagtatttgcaaaaatattccctgtgtatttgacattgtttgtatgaacggtaattatggtaaatttgttataaatacaataagactacttgcaatagttcatacatcaacaatacagtatgacataatagttgacgaagacaagatattacatctttttaagaa----TAA---AC--AT-A--TCAGCAAAGTA--TC-T-TGAAACACATTTTCTCTGAT-ATTATTGTAAAGTCCACAA-------T-------G------T-------A-AC-AGAAAATGT-T-------TCTCGTCTTC---AA-CG-GATCCTGTGTCACAGAATCTTCATAGTCTCTGTTCTGGAGTT--TCACCAATATACCTTCCAGTCTCTATTCTTAAATAGGTAAAATGCCACACCTAAATTGACACATAATAGATCTCTCGTT-T-TTCTTTAAATTGGTTACACCATAcgatataatctgtgagactcctggtttatatgtagcatgttagcaatatctacaaataaatctctgaaatagttttctcgcaggccattatacagttcacactgaaataggaagcgcttcgtatcttcttgtactcaaatatcagacaa
gi|5 : TTATTATA---------G-------T-------G------ATATGTGTACAT-GGAAAGTGTGTGACAAGATTTCATCTTC---AATCT-GAAGTAGATT-ACAAAGTGTG---AGTCTTTGCTCTCG--TTGCTCACCGACATATCGTCGCGTTTCAACTC-TTTGA-GGTAGAATACCACATCTAAATTGGGTCAACAATGAACGTTCC-TGT-TTGTTAAATTTTAAAACCATATATTGTTCAAGTTCAAATTTATTTTTAA--AAGTAACATAA--GTCTGCAATTTAGGCAT-CTT------GCTACTTCTACCTTCCAGATATTTGAGTAGTATTTCGTTATCTTAGTCTTAA-CAATGT-CTATGTGTATAA--CA------GTTTTGTTTTCAAAATAGTTCATCAGATTTAAAT-------TGGACAAAACTGT-TTTCAGATCATTGT-ACCAATTATGTTTACA----CTTGTTATAGTTCATGTT-AAAG-ACACGCCTGGTT------AGCCTATTGTCATCAAACAATACAAGTCTGTTCCAGTAT-CGTATCATTGCTACCCAACGGCGATAACAACTAGGAAGCCATCCCGCACATG----CGGTGATTGCAAGTTTCGGGGC------AAATCTGTGTACGCCAAGAAAGTACCGTAAAGCACGATTCTGTACATTGTC--------TGGTAATGTTTGAATCCCCATACTGATGCACAGTAGTCCAATATTGGTACAAAACACGATTCAAATAGTCTTTTGGTAG--TTTAATATCTTTTCCAAG-GTATAAGTCATTTATctg
gi|4 : TCCTTAAAAAGGCGATAT-G--TTCT-CAGTTTTAATATTCTT------TGAACGTCTTCTGACCAGACATTAGAATAATA----GTT-TACTAG---TAATCCATGTGCT-TGTG-ATAAGTCAATAATTGTTCTGTTTTC---GTAATTTG-CGGAT---AACCCTAGCATAGACATAAC-GTGTTTAATATCA-TGTGACCAATTATTTTTGCA----CA--TTAAA----TAGTCGGAATTTAACAC--TTTTTTGT-AATCCGTCTGTCATCCATCAAAATCACTCTGTTCCA-CATACGCAACATGTTTt
gi|10 : gtttattattgtgacatgtgcatacattcattaagttatacatatatacaattaacaaaattatttggcacccggcccattgggcctatatgtcaccaggataatcaagaaagtaattatatacaaaattcgtaaatactctattatatacataagttaaatatgacgtacaaaatcctgacaaaatattagtaaaatattcactgagtatccagtattgtcagtatggagtgtagttataaatataataggaaaacaggcaatatatcatacatcaacaatacatgatgtattaagtttgacataatattttacgaaaacaagatatttcttctttttaagaaagcacagagaagaaactttgcaagttgtcttggatgcgctgatatgatatatgcaagtcgttagtttatatgcttgtaagcattatttacaaataaatctctgaaattgttttcttgcaggtcattatacagttcacactgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTACACATCAC-ATGCATAATGTCA-AAAGTCCAGTTATTTGTACAGCGGTT--ATAA--------TCATGCATAAATACTTTCTTT-GTCAGTCTAT-TATTATCCATGATAATAAGTCCATTCCA-AAACCGTAACATCCATGTCCATCGTCTGTACACGCTTGGTATCCA-GCCA---GTATCACC------CACGAGAGCTGATGTCGGCCCAAACCTACGTACGCCAAGGAAATAACGCATAGCTCGATTTTGGACGTTGTCAATCGT-TTGAAACTGTCTATATCCCCATACTGATGCACAGTAGTCTAGGATCGGCACAACACACGAATTGTAAAGT-TTTTCAAA-----CGAAC---------GGAGGAT--GTATTT
16 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): CTGTTTCTACTCTTAAACTAGAATACCACCTCTAAACTGGGTCAACAACAAACGTTCATGTTTCTTCTCTTAGAGGTAGAATACATTGTTCAAGTTCAAAAAGTGAAAAGTTACATAAATCCGCAATTTAGACACTCATTTACTTCTGCCTTCAAGTTGTTTGAGTAGCATATCGTTATCTTAGTATAGTGATGTCTATGTGTATAACATATTTGTTTTCAAAATAGTTTAACAGATTGAAATTGGACGTGACTGTTTTCAAATCACTGCACCAATTATTTT
Unaligned ( gi|14 ): ATAAGTAAGTAAATAGTTTATAATAGTGGCATGTGCATGGCAGTACAATAATATATGCATTGCAAAATGATAAATAGTAGATGACCCGGCCCAGTGGGCCTACAAGTCACTGCCAATAAATAGAAGTGGTATGCAATAGTAGATGACCCGGCCCAGTGGGCCTATAAGTCACTGCGAATAAATAGAAGTCATATGCAATTTCATTTGATAATAAGCAATGGGACATAAATAGGATAATGTAGGTAAACTTTCAAAGGCACAAATGTAGGTAAA
Unaligned ( gi|15 ): ATTATTAAAGTGACATGTGTACATGTAACATGACATATATATAATTTTAAACAACACACCCGGCCCAATGGACCTATAAGTCACCTATACAAATAAACAATTATATTATTTCACATGAAATTATGCTTGTTATTAAACACCATAAAAATGAATAATATGTACAAGGTAATTACATAACAACATATTAATTACGATTGTTTGAAAAGTCATTGGTTATATAATGTATTTCTTCTTCTCATGTAAGCCTTAACAATATATTTAGCTACTTTTCT
Unaligned ( gi|18 ): AAGTAAGTAAGTAGTAAGTAAGTGAGTCAGTATAGTGGGACATCTGTACATGTATCATGACATACATATACAGTATTTGTAACAACACGCCGGGCCGAGTGGAGCTATAAGTCACCTATAAAGATAAATAGTTATTATTACATTAATGTAATTATATTATTTGACATATAAGCATGTTTGCAATTAAACATCATCAAACAATCCAATTGAATGGTTGCATGCATGTTTTAAAA
Unaligned ( gi|19 ): CAAAGTGACATGTGCATCGACATATCAATAAAACTCAATAAACAATAAAAGAGACTGAAGCGTCCGGCCAAATGAACCTATAAGTCACTATGGACAATACAAAACATCATATTTAAAACATGACATCATCGGTTTTGACGATATTAAATTCTATTTAATATACAAAAATGTTATGCTATATGTAAACGTGTCTTTTAACAAATAATACTGATAACTTTAATTATACTGTT
Unaligned ( gi|24 ): TGCCAAGAAAGTATCATAAAGCACGATGTTGAATGTTGTGTATTGTCTGACGCTGTATGAAACCTTATACGGCAGAACAACGGTCTAATATTGGAATGAGGCCTGAATGAAATATATTATTTGAATCCAATGTCTTT
Unaligned ( gi|26 ): ATTTGTAAGTAAGTATGTAAGTAAGTTTTTATTATAAAAACGTGTGTAAATTTATAACATAATATGTTAATATGCAGTTTTTACAGAACACAATCGGCCCAATGGACCTAGTCACATATATAAATAT
Unaligned ( gi|27 ): AATACTTCTTCATGTGTTAATAATATTTAAAAAAAATATACAAATTGTTTAAAAAATGTGTCATGTGATAACAATATTGGATGTATTTTAAGTACGTTAAAAGGACGTGGCTAACTGTTTTA
Unaligned ( gi|28 ): TAAGTATGTAGATATTGACATGTGCATGACAATACAATAACATGCAAAATGATATGTGGAGCACTAAGGCCTAACAGGCATATAATAATTCGCTACCAAAAAACAAAAATGTCATTCCAT
Unaligned ( gi|29 ): TAAGGTGACAGGTACACATGTAACATGACATATATTTGGAACACACACACGATGGAACCATAACAGATACTATCTTAGACAAGCATCATTAAATCATTCATTATGGTTAGACACTAAA
Unaligned ( gi|33 ): ACCTTCCAGATATTTGAGTAATAGTCCGTTATCTTGGTCTTAACGATATCTATGTGTATAACAGATTTGTTTTCAAAAAAGTTTATCAGATT
Unaligned ( gi|34 ): TTGTGTATTAAAGTGACATGTGTGCAACAAAATTATAGTAATTACATTCAAATTTATCAATGGCACACCCGACCAGATGGACCTAAATC
Unaligned ( gi|35 ): TGTGCATACAATGTATATTACAAATAGTTATATACAAAAAAAAAAAAGCGGCCCATTGGACCTATAAGTCACCTAAACTATTAGGTAT
Unaligned ( gi|36 ): GTCACTTCCAATAAATAGAAGTAATATGAAATTCATATGATAATAATCAACATAATAGACTATTGTAGGTACACATTTGCAT
Unaligned ( gi|38 ): AAAAAACAAGCACCCGGCCCATTGGACCTATAAGTCACCTAAACTGTTAGGTATAAACTG
Unaligned ( gi|39 ): TCTTAGAGGTAGAATACCACATCTAAATTGGGCCAACAATGAACGT
Alignments
lowQualScore : 111 111 111111 11111111111 111 11 11111 11111111111 1111 1111111 6666666 111111 1111111 1 222 1 11 111111 1111 2222 1 111 2222 11 222 2 2222222222222 11111 2 222222 5555555555555 2 1 222 2222222 11
lowQualScore : 111 0 000 2 1 44 333 3 1 88888888888 22 1 999999 1 555555 1 22222222222 22 22 44444 33 2 555555 44 444 5555 888888 000 3 33 22222 3 6666666 1 33333333333 55 4 2 4 1 1111 2 4 0 5 1 0 0 1 2 888 1 888 66 0 888 777 66 1 66 4 0 0 55 5 6666666 5555555 666666 5 5 6666666 4 1 1 7 0 1 1 77 1 2 0 5 1 88 4 55 0 66 1 44 1 1 222 8 5 5 9999 4 1 1 1 11 1 3 1 55 6 888 1 2 1 666666 5 4 0 5 2222 2 77 0000 1 77 000 5 1 6 0000 5 55 5 1 888 2 8888888888888 11111 1 88888 6 99 3 6 99 3 1 6 6 6 3 1 9 333333 1 1 1 1 3 1 1 1 7777777777777 1 5 5 1 6 1 1 4 1 1 2 1 0 0 1 555 11 22 3333333 1 88 22
lowQualScore : ... . ... . . .. ... . . ........... .. . ...... . ...... . ........... .. .. ..... .. . ...... .. ... .... ...... ... . .. ..... . ....... . ........... .. . . . . .... . . . . . . . . . ... . ... .. . ... ... .. . .. . . . .. . ....... ....... ...... . . ....... . . . . . . . .. . . . . . .. . .. . .. . .. . . ... . . . .... . . . . .. . . . .. . ... . . . ...... . . . . .... . .. .... . .. ... . . . .... . .. . . ... . ............. ..... . ..... . .. . . .. . . . . . . . . ...... . . . . . . . . ............. . . . . . . . . . . . . . . . ... .. .. ....... . .. ..
lowQualScore : 888 8 000 0 5 55 777 8 0 77777777777 55 8 333333 8 000000 8 55555555555 55 55 33333 88 2 555555 22 777 7777 888888 222 6 99 77777 6 7777777 9 44444444444 55 0 6 4 9 2222 3 4 2 7 0 2 1 4 8 888 0 888 99 2 888 888 11 9 11 4 8 1 44 0 2222222 0000000 444444 0 0 2222222 2 0 4 9 3 0 0 99 0 7 8 0 0 66 2 55 1 00 0 88 1 0 999 9 7 7 0000 0 4 0 0 77 0 3 4 77 6 444 3 1 0 444444 7 3 1 1 1111 1 99 0000 4 99 000 7 4 6 7777 6 00 7 7 444 7 9999999999999 88888 0 22222 7 22 2 7 22 2 8 7 7 7 2 0 6 000000 0 0 0 0 2 4 4 0 8888888888888 4 8 0 0 4 0 0 2 0 0 5 2 0 2 0 000 33 00 0000000 0 55 00
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCAAATA--TAGATAAGATAAG---ATATTGTTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TANGT----------TATACA--T-A------TATA-CAATT---G--ACA-AAAT--TAT--N--TG--G--CA-----CCCGGCCCA-TTGGGCCTATANGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--NAATTCGTAAATAC-TGCTATTATAT-----A-CA--T--AGGTTAACTATGACGTACA-------A---AAT--CCTGACAAAATATTAGT-AAAATATTCCCTGNGTATCCAAT-ATTGTCAGTATGGAGTGTAGTTATGATAGA--TATGTTATAAATACA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGAGGTATTAAGTCTGACATAATAGTTTACGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGACAAGAAACTTTGCAAGTTGTCTTGGA---TGCGCTGATATGATATGTGNA---AGTCG--CTGGTTTATAT---GCATGTAA---GC--ATTA--TTTACAAA-TAAATCTCTGAAATN-GTTTTCTCGCAG-GTCATTATA-------CAGTT-ACACTG------AAAT-AGAAAGTGT-T-------TCTCATCTTCNA-CTGAATTTGACTGACAAAGTCTACAAAGTCTCTGATCNGG--TTGCTCCCCGACATACCTTCCGGTTTCAATTC-TNAGT-GGTAAGATACCACNTCTAAATTGGNNCAACANNGAGCGTTCATG--TCTTGT-TTA-AGTTTATCANAACGTANTNCTCGCGTTCAAANTTTTCCTTAAACAG--GCGATAT--GTCCTCAGTTTNGACATNCTT------TGA-ACGTCTTCTGACC----AGACATTNGAGTA--ATA----GTT-TACTAG--T---A-ATCCATGTGCTT-TGATGNGTCAATAAC-TGTTCTGTTTTCAAAGTAGTTTG-CGGAT---AACCCCAGCATAGACATAAC-GTG-TTTAANATCAC-GTG-ACCAATTATTTTTGCA-C--TTTAAATAGTCG-GAATTAAA--CACTTTTTTT-GT-AATCCGTCTGTCATCCATCAAAATCACTCTGTTCCA-CATACGCAACATGTTTCCCCATCGTCTGTAAACACTTGGTATCCACCCGGTATCCCCAATCATCGCGAGAATTGGCGT------GAANCGATGAACGCCAAGAAAGTATCGTATAGCTCGATTCTGAACGTTGT---C---TGTATGTTGATACTGTTTGAATCCCCATACTGANGAACAATAGTCNAGGATNGGCACAANACACGANTCGNATAGT-TT-TTCGNAG--TTTAATNTCTTTTCCAAGAGTATAAGTNNTTTAT
Reference ( family-717 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCAAATA--TAGATAAGATAAG---ATATTGTTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TANGT----------TATACA--T-A------TATA-CAATT---G--ACA-AAAT--TAT--N--TG--G--CA-----CCCGGCCCA-TTGGGCCTATATGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--NAATTCGTAAATAC-TGCTATTATAT-----A-CA--T--AGGTTAACTATGACGTACA-------A---AAT--CCTGACAAAATATTAGT-AAAATATTCCCTGTGTATCCAAT-ATTGTCAGTATGGAGTGTAGTTATGATAGA--TATGTTATAAATACA-ATAGGAAA-ACAGGCAATANATCATACATCAACAATACATGAGGTATTAAGTCTGACATAATAGTTNACGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGACAAGAAACTTTGCAAGTTGTCTTGGA---TGCGCTGATATGATATGTGNA---AGTCG--CTGGTTTATAT---GCATGTAA---GC--ATTA--TTTACAAA-TAAATCTCTGAAATN-GTTTTCTCGCAG-GTCATTATA-------CAG-------TG------AAAT-AGAAAGTGT-T-------TCTCATCTTCNA-CTGAATTTGACTGACAAAGTCTACAAAGTCTCTGNTCNGG--TTGCTCNCCGACATACCTTCCGGTTTCAATTC-TNAGT-GGTAAGATACCANNTCTAAATTGACACAANANAGAGCGTTCNTG--TCTTGT-TTA-AGTTCATNACAACGTANTNCTCGNATTCAAANTTNTCCTTAAACAG--GCGATAT--GTTCTCAGTTTTGATATNCTT------TGA-ACGTCTTCTGACC----AGACATTAGAATA--ATA----GTT-TACTAG--T---A-ATCCATGTGCTTGTGATGAGTCAATAAT-TGTTCTGTTTTCAAAGTAATTTGTCGGAT---AACCCCAGCGTAGACATAAC-GTG-TTTAANATCAT-GTG-ACCAATTATTTTTGCA-C--TTTAAATAGTCG-GAATTAAA--CACTTTTTTTCGT-AATCCGTCTGTCATCCATCAAAATCACTCTGTTCCA-CATACGCAACATGTTTNCCCATCGTCTGTAAACACTTGGTATCCACCCGGTGTCCCCGATCATCGCGAGAATTGGCGT------GAANCNATGNACGCCAAGAAAGTANCGCATAGCTCGATTCTGNACGTTGT---C---CGT---TTGATACTGTTTGAATCCCCATACTGATGCGCAGTAGTCNAGGATCGGCACAANACACGANTCGNANAGTCTT-TTCGNAG--TTCGANNTCTTTTCCAGGAGNATAAGTNNTTTAT
gi|1 : TCCAAATA--TAGATAAGATTAG---ATATTGTTTATTATT-GTGACATGTGCAT--ACTT-TCTT-CAAGT----------TATACA--T-A------GATA-CAATT---G--ACA-CAAT--TAT--T--TG--G--CA-----CCAGACCCT-TTGGGCCTATATGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--AAATTCGTAAATAC-T-TTATTATAT-----A-CA--T--TGGTTAACTATGACGTACA-------A---CAT--CCTGACAAAATATTGGT-AAAATGTTCCCTGAGTATCCAAT-ATTGTCAGTATGGAGTGTAGTTATGATAAG--TTTGTTATAAATATA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGAGGTATTAAGTATGACATAATAGTTTACGAAAACAAGATATTTCTTCTTTTTAAGGAAGCACAGACAAGAAACTTTGCAAGTTGTCTTGGA---TGCGCTGATATGATAGGTGGA---AGTCG--CTGGTTTATAT---GAATGTAA---GC--ATTA--TTTACAAA-TAATTCTCTGAAATA-GTTTTCTCGCAG-GTTATTATA-------CAG-------TG------AAAT-AGAAAGTGT-T-------TTTCATCTTCTA-CTAAATTTGACTGACAAAGTCTACAAAGTCTCTGATCAGG--TTGCTCCCCAACATACCTTCCGGTTTCAATTC-TGAGT-GGTAAGATACCAGTTCTGAATTGACACAATACAGAGCGTTCA----TTTTGT-TTA-AGTTTATCATAACATAGTCCTCACATTTAAATTTTTCCTTAAACAG--GCGATAT--ATTCTCAGTTTTGATATACTT------TGA-ACGTCTTCTGACC----AGACATTAGAATA--ATA----GTT-TACTAG--T---A-ATCCATGTGCTTGTGATAAGTCAATGAT-TGTTCTGTTTTC---GTAATTTG-CAGAT---AACCCCAGCATACACATAAC-GTG-TTTAATATCAT-GTG-ACTAATTATTTTTGTA-T--TTTAAAAAGTCG-AAAGTAAA--CACTTTTTTTTGT-AATCCGCCTGTCATCCATCAAAATCACTTTGTTCCA-CATACGCAACATGTTTCCCCATCGTCTGTAAACACTTGGTATCCACCCGATGTCCCCAATCATCGCAAGAATTGGCGT------GAAGAGATGAACACCAATACAGTATCTTATGGCTCTTTTCTGAACATTAT---C---TTTATGTTGATACTTCTTGAATCTCCACACTGAGGAGCAATAGTCAAGGATAGGCACAACACATGATGTGTACAGT-TT-TTCGTAGGATTTGAACTCTTT---AAGAGTAT--GTATTTTAT
gi|10 : tgattatgtctattgattatgtcattaacaagcgatcttgctttctgcctaaatggtcatccgtgTACACATCAC-ATG-CATAATGTCAA-AAG-TCCAGTTATTTGTACAGCGGTT---ATAATCATGCAT-AAA--TACTTTCTTT-GTCAGTCTAT-TATTATCCATGATAATAAGTCCATTCCA-AAACCGTAACATCCATGTCCATCGTCTGTACACGCTTGGTATCCAGCCAGTATCACC------CACGAGAGCTGATGTCGGCCCAAACCTACGTACGCCAAGGAAATAACGCATAGCTCGATTTTGGACGTTGT---CAATCGT---TTGAAACTGTCTATATCCCCATACTGATGCACAGTAGTCTAGGATCGGCACAACACACGAATTGTAAAGT-TT-TTCAAActataattccaccaagtgcacggcctgctgctttcccgagcgattcactagtgtacattaagtggttcttttcatggaaaataacccctagatatttgtata
gi|11 : cgagttTA--TAGATGAGATAAG---ATATTGTTTATCATT-GTGACATGTGCAT--ACAT-TCAT-TAAGT----------TATACA--T-A------TATA-CAATT---G--ACA-AAAT--CAT--T--TG--G--CA-----CCCGGCCAT-TTCGGCCTATATGTCACC----A-GGATAAT----GAAAG---TAAT----TATAT------ACA--CAATTCGTAAATAC-T-CTATTATAT-----A-CA--T--AGGTTAACTATGATGTACA-------A---AAT--CCTGACAAAATATTGGT-AAAATATTCCCTGAGTATCCAAT-ATTGTCAGTATGGAGTGTAGTTATGATAGA--TATGTTATAAATATATATAcgaacggaggatgtatttctttgttacttcttt
gi|12 : tgtaaaagtGATAAGATACG---ATATTGTTTATTATT-GTGACATGTGCAT--ACAT-TAAT-TATGT----------CGTACA--T-A------TATA-CAATT---G--ACA-AAGT--TAT--T--TG--A--CA-----CCCTGCCCA-TTGGTCCAGTTTGTCATC----A-GGTTAAA-CAAGAAAG---TATT----TATAT------ACA--CAGTTCACAAGTAC-TGCTATTGTAT-----A-CA--T--AGGCTAACTATGAAGCATA-------A---AAT--GCTGACAAAATATTAGT-AAAATATTCCCTGTGTGTATAATAATTTT---TAT--AGT-TCG-TGTGAGCGAT-TATGTTATAAATACA-CTA--AAATGCAGGCAGTAGATCAAACCTTATCAATACATGAAGTATTAAATCTGACATAATAATGTGCGAAAACAtatccaatcatggttccaatatttaacatattaaactaatttgataaaaatatgataatt
gi|13 : GTTTCTACTC-TTAA--ACTAGAATACCACCTCTAAACTGGGTCAACAACAAACGTTCATGTTTCTTCTCTTAGAGGT----AGAATACATTGTTCAAGTTCAAAA-----AGTGAAAAGTTAC-ATAA--ATCCGCAATTTAGACACTCAT------TTA-----CTTCTG-CCTTCAAGTTGTTTGAGTAGCATATC--GTTATCTTAG--T---ATAGTGATGT-CT----ATGTGT--ATAACATATT-TGTTTTCAAAATAGTTTAACAGATTGAAAT-------TGGACGTGAC--TGTTTTCAAATCAC--TGCACCAATTATTTT
gi|14 : ctATAAG-TAAGT--AAATAGTTTATAATA-GTGGCATGTGCAT--GG----CAG-TACA------------ATA-A--T-A------TATG-CA-TT---G---CA-AAAT--GAT--AAATA--G--TAGATGACCCGGCCCA-GTGGGCCTACAAGTCAC
gi|14 : A-----CCCGGCCCA-GTGGGCCTATAAGTCACT----GCGAATAA------ATAG---AAGT----CATAT------GCA--tgccaataaatagaagtggtatgcaatagtagatgacccggcccagtgggcctataagtcactgcgaataaatagaagtcatatgcaatttcatttgataataagcaatgggacataaataggataatgtaggtaaactttcaaaggcacaaatgtaggtaaa
gi|15 : ataagtaagtaaatagtttataatagtggcatgtgcatggcagtacaataatatatgcattgcaaaatgataaatagtagatgacccggcccagtgggcctacaagtcactgccaataaatagaagtggtatgcaatagtagatgTTATTAAA-GTGACATGTG--T--ACAT-GTAA-CATG--------------ACA--T-A------TATA-TAATTTTAA--ACA-ACA------------------CA-----CCCGGCCCA-ATGGACCTATAAGTCACC-------TATA---CAAATAAA---CAAT----TATATTATTTCACATGAAATT-----ATGCTTGTTATTAAAC-----ACCA--TAAAAATGAATAAT-ATGTACA-------AGGTAATTACATAACAACATATTAAT-atttcatttgataataagcaatgggacataaataggataatgtaggtaaactttcaaaggcacaaatgtaggtaaa
gi|16 : aTTTTTTCTTTTTAAGAAAGCACAGACAAGATACTTTGCAAGATGTCTTGGA---TGCGCTGATATGATATGTGCA---AGTCG--TTGATTTATAT---GCTTGTAA---GC--ATTA--TTTACAAA--AAATCTCTGAAATT-GTTTTCTCGCAG-GTCATTATA-------CAGTTCACACTG------AAAT-AGAAAGTGT-T-------TTTCATCTACTA-CTGAATTTGACTGACAAAGTCTACAAAGTCTCTGATCAAG--TTGCTCCCCAACATACCTTCCGGTTTCAATTtacgattgtttgaaaagtcattggttatataatgtatttcttcttctcatgtaagccttaacaatatatttagctacttttct
gi|17 : TAA---AC--AT-A--TCAGCAAAGTA--TCT-TGAAACACATTTTCTCTGAT-ATTATTGTAAAGTCCACAA-------TG------TAAC-AGAAAATGT-T-------TCTCGTCTTCAA-CGGATCCTGTGTCACAGAATCTTCATAGTCTCTGTTCTGGAGTT--TCACCAATATACCTTCCAGTCTCTATTCTTAAATAGGTAAAATGCCACACCTAAATTGACACATAATAGATCTCTCGT---TTTTCT-TTA-AATTGGTTACACCATACT
gi|18 : TAGT-GGGACATCTG--T--ACAT-GTAT-CATGA----------CATACA--T-A------TACAGTATTT---GTAACA-ACA------------------CG-----CCGGGCCGA-GTGGAGCTATAAGTCACCTATAA-AGATAA------ATAG---TTAT----TAT-T------ACAT-TAAT--GTAATTA-----TATTATTTG----A-CA--T--Ag
gi|19 : aagtaagtaagtagtaagtaagtgagtcagta-GTGACATGTGCATCGACATATCAA-TAAA------------ACTCA----A------TAAA-CAAT---------A-AAAG--AGA--C--TGAAG--CG-----TCCGGCCAA-ATGAACCTATAAGTCACT----ATGGACAATACAAAAtaagcatgtttgcaattaaacatcatcaaacaatccaattgaatggttgcatgcatgttttaaaa
gi|2 : caaaTTCAAACA--T---TAAGATAAG---ATATTGTTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TAAGC----------TATACA--T-A------TATA-CAACT---G--ACA-CACT--TAT--T--TG--G--CA-----CCCGGTTCA-TTGGGCCTATATGTCAAT----A-GGATAAT-ATAGAAAG---TAAT----TATAT------ACA--AAATTCGTATATAC-TG-TATAATAT-----A-CA------GGTTAACTATGACATACA-------C---AGT--CCTGACAAAATATAAGC-AAAATATTCCCGGAGTATCCAAT-ATTGTCAGTATTGAGTCTAGTTATGATAGA--TATGATATAAATACA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGAGGTATTAAGTCTGACATAATAGTTGGCGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGATAAGAAACTTTGCAAGTTGTCTTGAA---TCCGCTGACATGATATGTGGA---AGTCG--CTGGTTTATAT---ACATGTAA---GC--ATTA--TCTACAAA-TAAATCTCTGAAATT-GTTTTCTCGCAG-GTCATTATA-------CAGTTTACACTG------AAAT-AGAAAGTGT-T-------TCTCATTTTCTA-CTGAGTTTAACTGACAAAGTCTACAAAGTCTCTAATTAGG--TTGTTCCCATATAAATCTTCCGGTTTCAATTC-TCAGT-GGTAAGATACCAGTTC-----TGACAAAATACAGAGCATGCAT---TCTTAT-TTA-AGTTCATCATAACGTAGTCCTCGCATTTGATGTGTTTCTTAAACAG--GCGATAT--GTTCTCTGATTTGATATACTT------TGA-ACGTCTTCTGACC----AGACATTAGAATT--ATA----ATT-CACTAG--T---A-ATCCATGTGCTTATGATGAGTCAATTAT-TGTTCTGTTTTC---GTAATTTG-CGGAT---TACCCCAGCGCAGACATTAC-GGG-TTTAAAATCAT-GTG-ACCAATTATTTTTGCA-C--ATTAAATAATCG-AAATTAAA--CAC-CTTTTTCGT-AATCAGTCTGTCATCCATCAAAACCACTTTGTGACC-CATATGCAACATGTTTCCCCATCGTCTGCAAACACTTGGTATCCACCCGGTATCCCCAATCATCTCGAAAATTGGCGT------GAAACGATGAAcatcatatttaaaacatgacatcatcggttttgacgatattaaattctatttaatatacaaaaatgttatgctatatgtaaacgtgtcttttaacaaataatactgataactttaattatactgtt
gi|20 : caattatacattctattttttatgtacgtcacatattcttatttgttaaaattattatTTATTATA-GTGACATGTGCA---A-AT-GCAT-AACAT----------TATATA--T-AAA----TATG-CAATT---A--ACACAGAA--CA-------------CA-----CCCGGCCCA-ATGGACCTTTAAGTCACC----ta
gi|21 : GATAAGATCAA---TTATTGTTTATTATT-GTGACATGTGCAC--ACAT-TCAT-CATGTTATATATATATATATA--T-A------TATA-CAATT---G--ACA-AAAG--TTT--A--TG--G--CA--------------------CTTATATGTCGCC----A-AGATAAT-CAAGAAAGTTATAAT----TAT---------------ATTC-TAA------GGTATTATTT-----A-CAGTT--A--TTAACTtatatgaatgtacatacacatataccctaatgtactatatattaagcatgcttgaaataatacatgtttgattacaattcgatataacagtttgtgcatttcgtctgtttgaaactggtt
gi|22 : AGATATGATAAG---ATATTGTTTATCATT-GTGACATATGCAT--ACAT-TCAT-TATTT----------TATGCG--T-ATATTATTATA-CAGTT---G--ACA-AAAT--TAT--A--TG--G--TA-----ACTGGCCCATTTGGGTTTATATGTCACC----A-GGGTCAT-CAAGAAAC---TAAG----TA
gi|23 : TATTGTTTATCATT-GTAACAT-------------TCAC-TATGT----------TAAACA--T-AATTA--TATA-CAATT---G--ACA-AAAT--TAT--A--TG--G--CA-----TCCGA-CCA-TTGGGCCTTTATGCCACC----A-GCATATG-TAAAAGGA---CATT----TATAT------
gi|24 : GCCAAGAAAGTATCATAAAGCACGATGTTGAATGTTGTGTAT---TGT---CTGACGCTGTATGAAACCTTATACGGCAGAACAACGGTCTAATATTGGAATGAGGCCTGAATGAAATA-TATTATTTGAA---TCCAATGTCTTTgaatatcccctttcaatattg
gi|25 : t---ATATT--TTATTAAT-GTGACATGTGCATG-ATAT-ACAT-GACAA----------TA-ACA--C-G-------ATA-CAAAT---A--AGA-AAATAATAA--A--TA--T--CA-----CCTGGTCCA-CTGCGCTTTTCGGTCAT---------ATAAT-TATGGAA----TAGT----T
gi|3 : gtaagtaaatacTT-GTGACATGTGCGT--ACAT-TTAT-TAAGT----------TATACA--T-A------TACA-CAATT---G--ACA-AAAT--TAT--T--TG--G--CA-----CCCGGCACA-TTGGGCCTATATGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--AAATTCGTAAATAC-T-CTATTATAT-----A-CA--T--AGGTTAACTATGACGTACA-------A---AAT--CCTGACAAAATATTAGT-AAAATATTCCCTGTGTATCCAAT-ATTGTCAGCATGGAGTATAGT-ATGATAGA--TATGTTATACATATA-ATAGGAAA-ACAGGCAATATATCATAAATCAATACTACATGAGGTATTA-------------------CGAAAACAAGGTATTTCTTCTTTTTAAGAAAACACAGACAAGAAACTTTGCAAGTTGTCTTAGA---TGCGCTGATATGATATGTGCT---AGTCG--TTGGTTTACAT---GTATGTAA---AC--ATTA--TTTACAAA-TAAATCTCTGGAATT-GTTTTCTCGCAG-GTCATTACA-------CAGTTAACACTG------AAAT-AGAAAGTGT-T-------T-TCATCTTCTA-CTGAATTTGACTGACAAAGTCTACAAAGTCACTGATCAGG--TTGCTCCCCAACATACCTTCCGGTTTCAATTC-TGAGT-GGCAAGATACTAGTTCTAAATTGACACAAAACAGAGCGTCCAT---TCTTGT-TTA-AGTTCATCATAATGTAATCCTCACATTTAAAATTTTCCTTAAACAG--GCGATGC--GTTCTCAGTTTTGATATACTT------TGA-ACGTCTTCTGACC----AGACATTAGAATA--ATA----GTT-TACTAG--T---A-ATCCATGTGCTT-------GTTAATAAT-TGTTCTGTTTTC---GTGATTTG-CGGAT---AACCCCAGCATAGACATAAC-ATG-TTTAATATCAT-GTG-ACCAATTATTTTTGCA-C--TTTAAATAGTCG-GAATTAAA--CACTTTTTTT-GT-AATCCATCTGTACTCAATCAAAATCACTCTATTTGA-CATACGCAACATGTTTCCCCATCGTCTGTAAACACTTGGTATCCACCCGGTGTCCCCAACCATCGCGAGAATTGGCGT------GAAGCGATGAACACCAAGAAAGTATCTCATGGCTCTATTCTGAACATTAT---C---TATATGTTGATACTTCTTGATACACCACACTGAGGAGGAATAGTCGAGGATGGGCACAATACA
gi|30 : ATGT----------TATACA--TTA------TGTA-CAATT---T--ACA-AAAT--TGT--A--TG--G--CA-----CCCAGCCCA-TTGGGCCTCTATGTCACC----
gi|31 : acaacaatacttacaacattgtgtttataaatggtaaaaaatgctttgCATCAACAATATATCAGGTATTAAGTCTGATATAATAGTTAACGAAAACAAGACATTTCTTCTTTTTAAGAAAGCAGAGACAAGAAAC
gi|32 : GTACA-------A---AAT--CCTGATAAAATATTAGT-AAAATATTCACTGTGTATTTAAT-ATTGTCAGTATGGACGGTAATTTTGTTAAG--AATGTTATAAATACA-ATAGAAgtgtttaattgtt
gi|34 : TTGTGTATTAAA-GTGACATGTG--T--GCA----AC-AAAAT----------TATA-G--T-A------ATTA-C-ATT-------CA-AATT--TATCAA--TG--GCACA-----CCCGACCAG-ATGGACCTAAAT
gi|35 : TGTGCAT--ACA----ATGTATAT----------TACAAA--T-AGTTA--TATA-CAAAA---A--AAA-AAA------------A--G--C---------GGCCCA-TTGGACCTATAAGTCACC----c
gi|37 : TTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TAAGT----------TATACAATT-G------TAT--TTATT---G----A-AAAT--CAT--taaactattaggtat
gi|38 : --G--CA-----CCCGGCCCA-TTGGACCTATAAGTCACC----t
gi|39 : aaaaaacaaTC-TTAGA-GGTAGAATACCACATCTAAATTGGGCCAACAATGAACGTtaaactgttaggtataaactg
gi|4 : GTTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TAAGT----------TATACA--T-A------TATA-CAATT---A--ACA-AAAT--TAT--T--TG--G--CA-----CCCGGCCCA-TTGGGCCTATATGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--AAATTCGTAAATAC-T-CTATTATAT-----A-CA--T--AAGTTAAATATGACGTACA-------A---AAT--CCTGACAAAATATTAGT-AAAATATTCACTGAGTATCCAGT-ATTGTCAGTATGGAGTGTA----------------GTTATAAATATA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGATGTATTAAGTTTGACATAATATTTTACGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGAGAAGAAACTTTGCAAGTTGTCTTGGA---TGCGCTGATATGATATATGCA---AGTCG--TTAGTTTATAT---GCTTGTAA---GC--ATTA--TTTACAAA-TAAATCTCTGAAATT-GTTTTCTTGCAG-GTCATTATA-------CAG-------T
gi|4 : TCCTTAAAAAG--GCGATAT--GTTCTCAGTTTTAATATTCTT------TGA-ACGTCTTCTGACC----AGACATTAGAATA--ATA----GTT-TACTAG--T---A-ATCCATGTGCTTGTGATAAGTCAATAAT-TGTTCTGTTTTC---GTAATTTG-CGGAT---AACCCTAGCATAGACATAAC-GTG-TTTAATATCAT-GTG-ACCAATTATTTTTGCA-C--ATTAAATAGTCG-GAATTTAA--CACTTTTTT--GT-AATCCGTCTGTCATCCATCAAAATCACTCTGTTCCA-CATACGCAACATGTTTtcacactgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccttaaaaaggcgatatgttctcagttttaatattctttgaacgtcttctgaccagacattagaataatagtttactagtaatccatgtgcttgtgataagtcaataattgttctgttttcgtaatttgcggataaccctagcatagacataacgtgtttaatatcatgtgaccaattatttttgcacattaaatagtcggaatttaacacttttttgtaatccgtctgtcatccatcaaaatcactctgttccacatacgcaacatgttt
gi|5 : gtttattattgtgacatgtgcatacattcattaagttatacatatatacaattaacaaaattatttggcacccggcccattgggcctatatgtcaccaggataatcaagaaagtaattatatacaaaattcgtaaatactctattatatacataagttaaatatgacgtacaaaatcctgacaaaatattagtaaaatattcactgagtatccagtattgtcagtatggagtgtagttataaatataataggaaaacaggcaatatatcatacatcaacaatacatgatgtattaagtttgacataatattttacgaaaacaagatatttcttctttttaagaaagcacagagaagaaactttgcaagttgtcttggatgcgctgatatgatatatgcaagtcgttagtttatatgcttgtaagcattatttacaaataaatctctgaaattgttttcttgcaggtcattatacagttcacactgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAT-GGAAAGTGTGTGACAAGATTTCATCTTCAATCTGAAGTAGATT-ACAAAGTGTG---AGTCTTTGCTCTCG--TTGCTCACCGACATATCGTCGCGTTTCAACTC-TTTGA-GGTAGAATACCACATCTAAATTGGGTCAACAATGAACGTTCCTG--T-TTGT-TAA-ATTTTAAAACCATATATTGTTCAAGTTCAAATTTATTTTTAAA--A--GTAACATAAGTCTGCAATTTAGGCATC--T------TGCTACTTCTACCTTCC----AGATATTTGAGTA--GTATTTCGTTATCTTAG--TCTTA-A-CAATGT-CT----ATGTGT--ATAAC-AGTTTTGTTTTCAAAATAGTTCATCAGATTTAAAT-------TGGACAAAACTGT--TTTCAGATCATTGT--ACCAATTATGTTTACA-C--TTGTTATAGTTC-ATGTTAAAGACACGCCTGGT--T-AGCCTAT-TGTCATCAAACAATACAAGTCTGTTCCAGTAT-CGTATCATTGCTACCCAACGGCGATAACAACTAGGAAGCCATCCCGCACATGCGGTGATTGCAAGTTTCGGGGC------AAATCTGTGTACGCCAAGAAAGTACCGTAAAGCACGATTCTGTACATTGT---C----------TGGTAATGTTTGAATCCCCATACTGATGCACAGTAGTCCAATATTGGTACAAAACACGATTCAAATAGTCTT-TTGGTAG--TTTAATATCTTTTCCAAG-GTATAAGTCATTTAT
gi|6 : ttattatagtgatatgtgtacAGATAAG---ATACTGTTTATTATT-GTGACATGCG-----ACAT-TCAT-TATGT----------TGTACA--T-A------TATA-CAACT---G--ATA-AA----TAT--A--TG--G--CA-----CCCAGCCCA-TTGGGCTAATATGCCACC----A-GATTAAT-CAAGAAAG---TAAT----TATAT------AGA--TGATTCGTGAATAC-TGCTATGATAT-----A-CA--T--ATGTTAACTTTTAAGTACATGTACGTA---AAT--GCTGACAAAATATTAGC-AAAATATT-TCTGTGTATTTAAT-ATTGGTAGTATGGACGATAGTTATTGTA-ATTTTTTTTATAAATATA-ATAAGAAT-ATTGACAATAGATCATACATCAACAAAACATGAACTATAAAGTCTGACGTAATAGTTTACAAAAACATCACATTTCTCCTTTTTATGAAAGCACAGACAAACAA------AGGTTTTCTCGGA---TGCGCTGATATGATATGTGAA---AGTCG--GT-GTTTATAT---GCATGTTA---GCAAATTAATCTTA-AAA-T--ATCTAT---ATA-GTTt
gi|7 : tATA---AGAGAAGAGAA----ATATTGTTTA-TATTCGT--TATGT-TAT--ACAT-AC----AAAT----------TAT-CA--T-A------CAT---AATT---G--ACA-AAAT--TAT--A--TG--G--CA-----CCCGGACCATTTGAATTTATATGCCACC----A-GGTTATT-CAAGAGAG---TAATAAACTATAT------ATA--CCATTCGTAAATAC-TGTTAGTATATAGTTAA-CT--T--A-TTTAACTATGAAGTTCA-------A---ACT--CCTGACTAAGTATTTGCAAAAATATTCCCTGTGTATTTGAC-ATTGTTTGTATGAACGGTAATTATGGTAAA--TTTGTTATAAATACA-ATAAGACT-ACTTGCAATAGTTCATACATCAACAATACA----GTA-------TGACATAATAGTTGACGAAGACAAGATATTACATCTTTTTAAGAAAGCACAGACAAGACATTTTGCAAGTTTTCTTGGA---TGCGCCGATATAATCTGTGAG---ACTC---CTGGTTTATATGTAGCATGTTA---GC--AATA--TCTACAAA-TAAATCTCTGAAATA-GTTTTCTCGCAG-GCCATTATA-------CAGTTCACACTG------AAAT-AGGAAGCGC-T-------TCGTATCTTCggcaaacgccattttctgtttcgttgactgcaattagtatttgccttactaagttctatatctgaccctgaaaagtgcaca
gi|8 : TACTTCTTCTTCTCATGTAAGCATATACAATATATTTAGCTACTTTTCTGGGAACGTGTG-TGACAAGAAATACACATTTAGCCATACTA-TCCATAC----CAT-TAAACTGC--AT-A--TTTGAAAA-TTGTTCATTCAAAAT-GTCTGCT-GTAATATCATTGTA-------AAA-------TGTACATTAGATCAAAAAATGA-T-------TTTCATCTTCAATCTGAAGTAGATT-ACAAATTGTGCAGAGTCTTTGCTCTCG--CGGCTCACCGACATATCGTCCCGTTTCTATTC-TTAGT-GGTAA--------------ATTGGGCCAACAATGAACGTTCCTG--T-TTGC-TCA-AATTTAAAAGCACATATTGTTCGAATTCAAATTTATCTTTAAA-AGTTAC-ATAA--GTCCGTAATTTAGGCACTCTTACTACATAA-AC--CTTC----C----AGATATTTGAGTA--GTA----TTC-CGTTAGCTT---A-GTCTAAACAATTTTTATGTGT--ATAAC-AGTTTTGTTTTCAAAATAGTTTATCAGAT------TCGAAT-TGGACATAAC--TGTTTTCAGATCAC-TAC-ACCAATTACTTTttgtactcaaatatcagacaa
gi|9 : AAATAAGTAAGTAAG-TAAGTAAATATT--TTATTAAA-GTGACATGTGCAT--ACA----ATATATGT----------TACAAA--T-AGTTG--TATA-CAA--------ACA-AAAA--CA-------A--G--CA-----CCCGGCCCA-TTGGACCTATAAGTCACC----
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): ATTTGTAAGTAAGTATGTAAGTAAGTTTTTATTATAAAAACGTGTGTAAATTTATAACATAATATGTTAATATGCAGTTTTTACAGAACACAATCGGCCCAATGGACCTAGTCACATATATAAATAT
Unaligned ( gi|27 ): AATACTTCTTCATGTGTTAATAATATTTAAAAAAAATATACAAATTGTTTAAAAAATGTGTCATGTGATAACAATATTGGATGTATTTTAAGTACGTTAAAAGGACGTGGCTAACTGTTTTA
Unaligned ( gi|28 ): TAAGTATGTAGATATTGACATGTGCATGACAATACAATAACATGCAAAATGATATGTGGAGCACTAAGGCCTAACAGGCATATAATAATTCGCTACCAAAAAACAAAAATGTCATTCCAT
Unaligned ( gi|29 ): TAAGGTGACAGGTACACATGTAACATGACATATATTTGGAACACACACACGATGGAACCATAACAGATACTATCTTAGACAAGCATCATTAAATCATTCATTATGGTTAGACACTAAA
Unaligned ( gi|33 ): ACCTTCCAGATATTTGAGTAATAGTCCGTTATCTTGGTCTTAACGATATCTATGTGTATAACAGATTTGTTTTCAAAAAAGTTTATCAGATT
Unaligned ( gi|36 ): GTCACTTCCAATAAATAGAAGTAATATGAAATTCATATGATAATAATCAACATAATAGACTATTGTAGGTACACATTTGCAT
Alignments
lowQualScore : 111 111 111111 11111111111 111 11 11111 11111111111 1111 22222 1111111 1 222 1 11 111111 1111 2222 1 111 11 3333 11 222 111 2222222222222 11111 111111 11 222222 222222222222 1 1 222 222 1 11
lowQualScore : 111 0 000 2 1 44 333 3 1 88888888888 6666 1 555555 1 555555 1 00000000000 22222 44444 22 1 1 555555 44 444 5555 888888 000 3 33 3 22222 55555 3 1 33333333333 55 4 1 4 1 1111 2 4 0 5 1 0 0 0 1 3 888 1 888 66 0 888 777 66 1 66 4 0 0 55 5 33333 5 5 6666666 4 1 1 7 0 1 1 77 0 2 0 5 1 88 4 55 0 22 0 22 1 222 8 5 5 7777 1 1 1 1 333 1 3 1 55 6 888 1 1 1 666666 5 4 0 5 2222 1 77 0000 1 77 000 5 1 22 1111 3 55 5 1 888 444 4444444444444 11111 1 111111 6 99 3 6 22 6 1 6 3 3 333333 1 1 3 1 1 0 555555555555 1 1 0 1 1 1 1 4 1 1 0 0 0 1 555 1 000 5 88 22
lowQualScore : ... . ... . . .. ... . . ........... .... . ...... . ...... . ........... ..... ..... .. . . ...... .. ... .... ...... ... . .. . ..... ..... . . ........... .. . . . . .... . . . . . . . . . . ... . ... .. . ... ... .. . .. . . . .. . ..... . . ....... . . . . . . . .. . . . . . .. . .. . .. . .. . ... . . . .... . . . . ... . . . .. . ... . . . ...... . . . . .... . .. .... . .. ... . . .. .... . .. . . ... ... ............. ..... . ...... . .. . . .. . . . . . ...... . . . . . . ............ . . . . . . . . . . . . . . ... . ... . .. ..
lowQualScore : 888 8 000 0 5 55 777 8 0 77777777777 4444 8 555555 8 444444 8 88888888888 55555 33333 11 7 0 555555 22 777 7777 888888 222 6 99 6 77777 55555 2 9 44444444444 55 4 0 4 9 2222 3 4 2 7 3 2 4 1 4 2 888 0 888 99 2 888 888 11 9 11 4 8 1 44 0 00000 0 0 2222222 2 0 4 9 3 6 0 99 7 7 8 0 0 66 2 22 1 00 2 00 1 999 9 7 7 1111 0 4 0 0 888 0 7 4 77 6 444 3 0 0 444444 7 3 1 1 1111 0 99 0000 4 99 000 7 4 33 3333 0 00 7 7 444 000 7777777777777 88888 0 444444 7 22 2 7 77 7 0 7 2 8 000000 0 4 2 4 4 8 000000000000 4 0 6 0 0 0 0 2 0 2 0 0 2 0 000 0 555 5 55 00
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCAAATA--TAGATAAGATAAG---ATATTGTTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TANGT----------TATACA----T-A------TATA-CAATT---G--ACA-AAAT--TAT--A--TG--G--CA-----CCCGGCCCA-TT-GGGCCTATANGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--NAATTCGTAAATAC-TGCTATTATAT-A-----CA--T--AGGTTAACTATGACGTACA-------A---AAT--CCTGACAAAATATTAGTAAAA-TATTCCCTGNGTATCCAAT-ATTGTCAGTATGGAGTGTAGTTATGATAGA--TATGTTATAAATACA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGAGGTATTAAGTCTGACATAATAGTTTACGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGACAAGAAACTTTGCAAGTTGTCTTGGA---TGCGCTGATATGATATGTGNA---AGTCG--CTGGTTTATAT---GCATGTAA---GC--ATTA--TTTACAAA-TAAATCTCTGAAATN-GTTTTCTCGCAG-GTCATTATACAG-T-TCA-CACTGAAATAGAAAGTGT-T-------TCTCATCTTCNA-CTGAATTTGACTGACAAAGTCTACAAAGTCTCTGATCNGG--TTGCTCCCCGACATACCTTCCGGTTTCAATTC-TNAGT-GGTAAGATACCACNTCTAAATTGGNNCAACANNGAGCGTTCATG--TCTTGT-TTA-AGTTTATCANAACGTANTNCTCGCGTTCAAANTTTTCCTTAAACAG--GCGATAT--GTCCTCAGTTTNGACATNCTT------TGA-ACGTCTTCTGACC----AGACATTNGAGTA--ATA----GTT-TACTAG--T---A-ATCCATGTG-CTT-TGATGNGTCAATAAC-TGTTCTGTTTTCAAAGTAGTTT-G-CGGAT---AACCCCAGCATAGACATAAC-GTG-TTTAANATCAC-GTG-ACCAATTATTTTTGCA-C--TTTAAATAGTCG-GAATTAAACAC-TTTTTTTGT-AATCCGTCTGTCATCCATCAAAATCACTCTGTTCCA-CATACGCAACATGTTTCCCCATCGTCTGTAAACACTTGGTATCCACCCGGTATCCCCAATCATCGCGAGAATTGGCGT------GAANCGATGAACGCCAAGAAAGTATCGTATAGCTCGATTCTGAACGTTGTC---TGTA-TGT-TGATACTGTTTGAATCCCCATACTGANGAACAATAGTCNAGGATNGGCACAANACACGANTCGNATA-GT-TTTTCGNAG--TTTAATNTCTTTTCCAAGAGTATAAGTNNTTTAT
Reference ( family-717 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCAAATA--TAGATAAGATAAG---ATATTGTTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TANGT----------TATACA----T-A------TATA-CAATT---G--ACA-AAAT--TAT--N--TG--G--CA-----CCCGGCCCA-TT-GGGCCTATANGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--NAATTCGTAAATAC-TGCTATTATAT-A-----CA--T--AGGTTAACTATGACGTACA-------A---AAT--CCTGACAAAATATTAGTAAAA-TATTCCCTGNGTATCCAAT-ATTGTCAGTATGGAGTGTAGTTATGATAGA--TATGTTATAAATACA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGAGGTATTAAGTCTGACATAATAGTTTACGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGACAAGAAACTTTGCAAGTTGTCTTGGA---TGCGCTGATATGATATGTGNA---AGTCG--CTGGTTTATAT---GCATGTAA---GC--ATTA--TTTACAAA-TAAATCTCTGAAATN-GTTTTCTCGCAG-GTCATTATACAG-T-T-A-CACTGAAATAGAAAGTGT-T-------TCTCATCTTCNA-CTGAATTTGACTGACAAAGTCTACAAAGTCTCTGATCNGG--TTGCTCCCCGACATACCTTCCGGTTTCAATTC-TNAGT-GGTAAGATACCACNTCTAAATTGGNNCAACANNGAGCGTTCATG--TCTTGT-TTA-AGTTTATCANAACGTANTNCTCGCGTTCAAANTTTTCCTTAAACAG--GCGATAT--GTCCTCAGTTTNGACATNCTT------TGA-ACGTCTTCTGACC----AGACATTNGAGTA--ATA----GTT-TACTAG--T---A-ATCCATGTG-CTT-TGATGNGTCAATAAC-TGTTCTGTTTTCAAAGTAGTTT-G-CGGAT---AACCCCAGCATAGACATAAC-GTG-TTTAANATCAC-GTG-ACCAATTATTTTTGCA-C--TTTAAATAGTCG-GAATTAAACAC-TTTTTTTGT-AATCCGTCTGTCATCCATCAAAATCACTCTGTTCCA-CATACGCAACATGTTTCCCCATCGTCTGTAAACACTTGGTATCCACCCGGTATCCCCAATCATCGCGAGAATTGGCGT------GAANCGATGAACGCCAAGAAAGTATCGTATAGCTCGATTCTGAACGTTGTC---TGTA-TGT-TGATACTGTTTGAATCCCCATACTGANGAACAATAGTCNAGGATNGGCACAANACACGANTCGNATA-GT-TTTTCGNAG--TTTAATNTCTTTTCCAAGAGTATAAGTNNTTTAT
gi|1 : TCCAAATA--TAGATAAGATTAG---ATATTGTTTATTATT-GTGACATGTGCAT--ACTT-TCTT-CAAGT----------TATACA----T-A------GATA-CAATT---G--ACA-CAAT--TAT--T--TG--G--CA-----CCAGACCCT-TT-GGGCCTATATGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--AAATTCGTAAATAC-T-TTATTATAT-A-----CA--T--TGGTTAACTATGACGTACA-------A---CAT--CCTGACAAAATATTGGTAAAA-TGTTCCCTGAGTATCCAAT-ATTGTCAGTATGGAGTGTAGTTATGATAAG--TTTGTTATAAATATA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGAGGTATTAAGTATGACATAATAGTTTACGAAAACAAGATATTTCTTCTTTTTAAGGAAGCACAGACAAGAAACTTTGCAAGTTGTCTTGGA---TGCGCTGATATGATAGGTGGA---AGTCG--CTGGTTTATAT---GAATGTAA---GC--ATTA--TTTACAAA-TAATTCTCTGAAATA-GTTTTCTCGCAG-GTTATTATACAG----------TGAAATAGAAAGTGT-T-------TTTCATCTTCTA-CTAAATTTGACTGACAAAGTCTACAAAGTCTCTGATCAGG--TTGCTCCCCAACATACCTTCCGGTTTCAATTC-TGAGT-GGTAAGATACCAGTTCTGAATTGACACAATACAGAGCGTTCA----TTTTGT-TTA-AGTTTATCATAACATAGTCCTCACATTTAAATTTTTCCTTAAACAG--GCGATAT--ATTCTCAGTTTTGATATACTT------TGA-ACGTCTTCTGACC----AGACATTAGAATA--ATA----GTT-TACTAG--T---A-ATCCATGTG-CTTGTGATAAGTCAATGAT-TGTTCTGTTTTC---GTAATTT-G-CAGAT---AACCCCAGCATACACATAAC-GTG-TTTAATATCAT-GTG-ACTAATTATTTTTGTA-T--TTTAAAAAGTCG-AAAGTAAACACTTTTTTTTGT-AATCCGCCTGTCATCCATCAAAATCACTTTGTTCCA-CATACGCAACATGTTTCCCCATCGTCTGTAAACACTTGGTATCCACCCGATGTCCCCAATCATCGCAAGAATTGGCGT------GAAGAGATGAACACCAATACAGTATCTTATGGCTCTTTTCTGAACATTATC---TTTA-TGT-TGATACTTCTTGAATCTCCACACTGAGGAGCAATAGTCAAGGATAGGCACAACACATGATGTGTACA-GT-TTTTCGTAGGATTTGAACTCTTT---AAGAGTAT--GTATTTTAT
gi|10 : tgattatgtctattgattatgtcattaacaagcgatcttgctttctgcctaaatggtcatccgtgTACACATCAC-ATG-CATAATGTCAA-AAG-TCCAGTTATTTGTACAGCGGTT---ATAATCATGCAT-AAATAC-TTTCTTTGTCAGTCTAT-TATTATCCATGATAATAAGTCCATTCCA-AAACCGTAACATCCATGTCCATCGTCTGTACACGCTTGGTATCCAGCCAGTATCACC------CACGAGAGCTGATGTCGGCCCAAACCTACGTACGCCAAGGAAATAACGCATAGCTCGATTTTGGACGTTGTCAATCGT----T-TGAAACTGTCTATATCCCCATACTGATGCACAGTAGTCTAGGATCGGCACAACACACGAATTGTAAA-GT-TTTTCAAActataattccaccaagtgcacggcctgctgctttcccgagcgattcactagtgtacattaagtggttcttttcatggaaaataacccctagatatttgtata
gi|11 : cgagttTA--TAGATGAGATAAG---ATATTGTTTATCATT-GTGACATGTGCAT--ACAT-TCAT-TAAGT----------TATACA----T-A------TATA-CAATT---G--ACA-AAAT--CAT--T--TG--G--CA-----CCCGGCCAT-TT-CGGCCTATATGTCACC----A-GGATAAT----GAAAG---TAAT----TATAT------ACA--CAATTCGTAAATAC-T-CTATTATAT-A-----CA--T--AGGTTAACTATGATGTACA-------A---AAT--CCTGACAAAATATTGGTAAAA-TATTCCCTGAGTATCCAAT-ATTGTCAGTATGGAGTGTAGTTATGATAGA--TATGTTATAAATATATATAcgaacggaggatgtatttctttgttacttcttt
gi|12 : tgtaaaagtGATAAGATACG---ATATTGTTTATTATT-GTGACATGTGCAT--ACAT-TAAT-TATGT----------CGTACA----T-A------TATA-CAATT---G--ACA-AAGT--TAT--T--TG--A--CA-----CCCTGCCCA-TT-GGTCCAGTTTGTCATC----A-GGTTAAA-CAAGAAAG---TATT----TATAT------ACA--CAGTTCACAAGTAC-TGCTATTGTAT-A-----CA--T--AGGCTAACTATGAAGCATA-------A---AAT--GCTGACAAAATATTAGTAAAA-TATTCCCTGTGTGTATAATAATTTT---TAT--AGT-TCG-TGTGAGCGAT-TATGTTATAAATACA-CTA--AAATGCAGGCAGTAGATCAAACCTTATCAATACATGAAGTATTAAATCTGACATAATAATGTGCGAAAACAtatccaatcatggttccaatatttaacatattaaactaatttgataaaaatatgataatt
gi|13 : GTTTCTACTC-TTAA--ACTAGAATACCACCTCTAAACTGGGTCAACAACAAACGTTCATGTTTCTTCTCTTAGAGGT----AGAATACATTGTTCAAGTTCAAAA-----AGTGAAAAGTTAC-ATAA--ATCCGCAATTTAGACACTCAT------TTA-----CTTCTG-CCTTCAAGTTGTTTGAGTAGCATATC--GTTATCTTAG--T---ATAGTGATGT--CT----ATGTGT--ATAACATATT-TGTTTTCAAAATAGTTTAA-CAGATTGAAAT-------TGGACGTGAC--TGTTTTCAAATCAC--TGCACCAATTATTTT
gi|14 : ctATAAG-TAAGT--AAATAGTTTATAATA-GTGGCATGTGCAT--GG----CAG-TACA------------ATA-A----T-A------TATG-CA-TT---G---CA-AAAT--GAT--AAATA--G--TAGATGACCCGGCCCA-GT-GGGCCTACAAGTCAC
gi|14 : A-----CCCGGCCCA-GT-GGGCCTATAAGTCACT----GCGAATAA------ATAG---AAGT----CATAT------GCA--tgccaataaatagaagtggtatgcaatagtagatgacccggcccagtgggcctataagtcactgcgaataaatagaagtcatatgcaatttcatttgataataagcaatgggacataaataggataatgtaggtaaactttcaaaggcacaaatgtaggtaaa
gi|15 : ataagtaagtaaatagtttataatagtggcatgtgcatggcagtacaataatatatgcattgcaaaatgataaatagtagatgacccggcccagtgggcctacaagtcactgccaataaatagaagtggtatgcaatagtagatgTTATTAAA-GTGACATGTG--T--ACAT-GTAA-CATG--------------ACA----T-A------TATA-TAATTTTAA--ACA-ACA------------------CA-----CCCGGCCCA-AT-GGACCTATAAGTCACC-------TATA---CAAATAAA---CAAT----TATATTATTTCACATGAAATT-----ATGCTTGTTATTAAAC-AC----CA--TAAAAATGAATAAT-ATGTACA-------AGGTAATTACATAACAACATATTAATatttcatttgataataagcaatgggacataaataggataatgtaggtaaactttcaaaggcacaaatgtaggtaaa
gi|16 : aTTTTTTCTTTTTAAGAAAGCACAGACAAGATACTTTGCAAGATGTCTTGGA---TGCGCTGATATGATATGTGCA---AGTCG--TTGATTTATAT---GCTTGTAA---GC--ATTA--TTTACAAA--AAATCTCTGAAATT-GTTTTCTCGCAG-GTCATTATACAG-T-TCA-CACTGAAATAGAAAGTGT-T-------TTTCATCTACTA-CTGAATTTGACTGACAAAGTCTACAAAGTCTCTGATCAAG--TTGCTCCCCAACATACCTTCCGGTTTCAATTtacgattgtttgaaaagtcattggttatataatgtatttcttcttctcatgtaagccttaacaatatatttagctacttttct
gi|17 : TAA---AC--AT-A--TCAGCAAAGTA--TCT-TGAAACACATTTTCTCTGAT-ATTATTGTAAAG-T-CCA-CAATGTAACAGAAAATGT-T-------TCTCGTCTTCAA-CGGATCCTGTGTCACAGAATCTTCATAGTCTCTGTTCTGGAGTT--TCACCAATATACCTTCCAGTCTCTATTCTTAAATAGGTAAAATGCCACACCTAAATTGACACATAATAGATCTCTCGT---TTTTCT-TTA-AATTGGTTACACCATACT
gi|18 : TAGT-GGGACATCTG--T--ACAT-GTAT-CATGA----------CATACA----T-A------TACAGTATTT---GTAACA-ACA------------------CG-----CCGGGCCGA-GT-GGAGCTATAAGTCACCTATAA-AGATAA------ATAG---TTAT----TAT-T------ACAT-TAAT--GTAATTA-----TATTATTTGA-----CA--T--Ag
gi|19 : aagtaagtaagtagtaagtaagtgagtcagta-GTGACATGTGCATCGACATATCAA-TAAA------------ACTCA------A------TAAA-CAAT---------A-AAAG--AGA--C--TGAAG--CG-----TCCGGCCAA-AT-GAACCTATAAGTCACT----ATGGACAATACAAAAtaagcatgtttgcaattaaacatcatcaaacaatccaattgaatggttgcatgcatgttttaaaa
gi|2 : caaaTTCAAACA--T---TAAGATAAG---ATATTGTTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TAAGC----------TATACA----T-A------TATA-CAACT---G--ACA-CACT--TAT--T--TG--G--CA-----CCCGGTTCA-TT-GGGCCTATATGTCAAT----A-GGATAAT-ATAGAAAG---TAAT----TATAT------ACA--AAATTCGTATATAC-TG-TATAATAT-A-----CA------GGTTAACTATGACATACA-------C---AGT--CCTGACAAAATATAAGCAAAA-TATTCCCGGAGTATCCAAT-ATTGTCAGTATTGAGTCTAGTTATGATAGA--TATGATATAAATACA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGAGGTATTAAGTCTGACATAATAGTTGGCGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGATAAGAAACTTTGCAAGTTGTCTTGAA---TCCGCTGACATGATATGTGGA---AGTCG--CTGGTTTATAT---ACATGTAA---GC--ATTA--TCTACAAA-TAAATCTCTGAAATT-GTTTTCTCGCAG-GTCATTATACAGTT-T-A-CACTGAAATAGAAAGTGT-T-------TCTCATTTTCTA-CTGAGTTTAACTGACAAAGTCTACAAAGTCTCTAATTAGG--TTGTTCCCATATAAATCTTCCGGTTTCAATTC-TCAGT-GGTAAGATACCAGTTC-----TGACAAAATACAGAGCATGCAT---TCTTAT-TTA-AGTTCATCATAACGTAGTCCTCGCATTTGATGTGTTTCTTAAACAG--GCGATAT--GTTCTCTGATTTGATATACTT------TGA-ACGTCTTCTGACC----AGACATTAGAATT--ATA----ATT-CACTAG--T---A-ATCCATGTG-CTTATGATGAGTCAATTAT-TGTTCTGTTTTC---GTAATTT-G-CGGAT---TACCCCAGCGCAGACATTAC-GGG-TTTAAAATCAT-GTG-ACCAATTATTTTTGCA-C--ATTAAATAATCG-AAATTAAACAC-CTTTTTCGT-AATCAGTCTGTCATCCATCAAAACCACTTTGTGACC-CATATGCAACATGTTTCCCCATCGTCTGCAAACACTTGGTATCCACCCGGTATCCCCAATCATCTCGAAAATTGGCGT------GAAACGATGAAcatcatatttaaaacatgacatcatcggttttgacgatattaaattctatttaatatacaaaaatgttatgctatatgtaaacgtgtcttttaacaaataatactgataactttaattatactgtt
gi|20 : caattatacattctattttttatgtacgtcacatattcttatttgttaaaattattatTTATTATA-GTGACATGTGCA---A-AT-GCAT-AACAT----------TATATA----T-AAA----TATG-CAATT---A--ACACAGAA--CA-------------CA-----CCCGGCCCA-AT-GGACCTTTAAGTCACC----ta
gi|21 : GATAAGATCAA---TTATTGTTTATTATT-GTGACATGTGCAC--ACAT-TCAT-CATGTTATATATATATATATA----T-A------TATA-CAATT---G--ACA-AAAG--TTT--A--TG--G--CA---------------------CTTATATGTCGCC----A-AGATAAT-CAAGAAAGTTATAAT----TAT---------------ATTC-TAA------GGTATTATTT-A-----CAGTT--A--TTAACTtatatgaatgtacatacacatataccctaatgtactatatattaagcatgcttgaaataatacatgtttgattacaattcgatataacagtttgtgcatttcgtctgtttgaaactggtt
gi|22 : AGATATGATAAG---ATATTGTTTATCATT-GTGACATATGCAT--ACAT-TCAT-TATTT----------TATGCG----T-ATATTATTATA-CAGTT---G--ACA-AAAT--TAT--A--TG--G--TA-----ACTGGCCCATTT-GGGTTTATATGTCACC----A-GGGTCAT-CAAGAAAC---TAAG----TA
gi|23 : TATTGTTTATCATT-GTAACAT-------------TCAC-TATGT----------TAAACA----T-AATTA--TATA-CAATT---G--ACA-AAAT--TAT--A--TG--G--CA-----TCCGA-CCA-TT-GGGCCTTTATGCCACC----A-GCATATG-TAAAAGGA---CATT----TATAT------
gi|24 : GCCAAGAAAGTATCATAAAGCACGATGTTGAATGTTG-----TGTATTGTCTGACGCTGTATGAAACCTTATACGGCAGAACAACGGTCTAATATTGGAATGAGGCCTGAATGAAATATAT-TATTTGAA---TCCAATGTCTTTgaatatcccctttcaatattg
gi|25 : t---ATATT--TTATTAAT-GTGACATGTGCATG-ATAT-ACAT-GACAA----------TA-ACA----C-G-------ATA-CAAAT---A--AGA-AAATAATAA--A--TA--T--CA-----CCTGGTCCA-CT-GCGCTTTTCGGTCAT---------ATAAT-TATGGAA----TAGT----T
gi|3 : gtaagtaaatacTT-GTGACATGTGCGT--ACAT-TTAT-TAAGT----------TATACA----T-A------TACA-CAATT---G--ACA-AAAT--TAT--T--TG--G--CA-----CCCGGCACA-TT-GGGCCTATATGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--AAATTCGTAAATAC-T-CTATTATAT-A-----CA--T--AGGTTAACTATGACGTACA-------A---AAT--CCTGACAAAATATTAGTAAAA-TATTCCCTGTGTATCCAAT-ATTGTCAGCATGGAGTATAGT-ATGATAGA--TATGTTATACATATA-ATAGGAAA-ACAGGCAATATATCATAAATCAATACTACATGAGGTATTA-------------------CGAAAACAAGGTATTTCTTCTTTTTAAGAAAACACAGACAAGAAACTTTGCAAGTTGTCTTAGA---TGCGCTGATATGATATGTGCT---AGTCG--TTGGTTTACAT---GTATGTAA---AC--ATTA--TTTACAAA-TAAATCTCTGGAATT-GTTTTCTCGCAG-GTCATTACACAG-T-T-AACACTGAAATAGAAAGTGT-T-------T-TCATCTTCTA-CTGAATTTGACTGACAAAGTCTACAAAGTCACTGATCAGG--TTGCTCCCCAACATACCTTCCGGTTTCAATTC-TGAGT-GGCAAGATACTAGTTCTAAATTGACACAAAACAGAGCGTCCAT---TCTTGT-TTA-AGTTCATCATAATGTAATCCTCACATTTAAAATTTTCCTTAAACAG--GCGATGC--GTTCTCAGTTTTGATATACTT------TGA-ACGTCTTCTGACC----AGACATTAGAATA--ATA----GTT-TACTAG--T---A-ATCCATGTG-CTT-------GTTAATAAT-TGTTCTGTTTTC---GTGATTT-G-CGGAT---AACCCCAGCATAGACATAAC-ATG-TTTAATATCAT-GTG-ACCAATTATTTTTGCA-C--TTTAAATAGTCG-GAATTAAACAC-TTTTTTTGT-AATCCATCTGTACTCAATCAAAATCACTCTATTTGA-CATACGCAACATGTTTCCCCATCGTCTGTAAACACTTGGTATCCACCCGGTGTCCCCAACCATCGCGAGAATTGGCGT------GAAGCGATGAACACCAAGAAAGTATCTCATGGCTCTATTCTGAACATTATC---TATA-TGT-TGATACTTCTTGATACACCACACTGAGGAGGAATAGTCGAGGATGGGCACAATACA
gi|30 : ATGT----------TATACA----TTA------TGTA-CAATT---T--ACA-AAAT--TGT--A--TG--G--CA-----CCCAGCCCA-TT-GGGCCTCTATGTCACC----
gi|31 : acaacaatacttacaacattgtgtttataaatggtaaaaaatgctttgCATCAACAATATATCAGGTATTAAGTCTGATATAATAGTTAACGAAAACAAGACATTTCTTCTTTTTAAGAAAGCAGAGACAAGAAAC
gi|32 : GTACA-------A---AAT--CCTGATAAAATATTAGTAAAA-TATTCACTGTGTATTTAAT-ATTGTCAGTATGGACGGTAATTTTGTTAAG--AATGTTATAAATACA-ATAGAAgtgtttaattgtt
gi|34 : TTGTGTATTAAA-GTGACATGTG--T--GCA----AC-AAAAT----------TATA-G----T-A------ATTA-C-ATT-------CA-AATT--TATCAA--TG--GCACA-----CCCGACCAG-AT-GGACCTA
gi|35 : TGTGCAT--ACA----ATGTATAT----------TACAAATAGTT-A------TATA-CAA--------AAA-AAA----AA--A--AG--------------CGGCCCA-TT-GGACCTATAAGTCACC----aatc
gi|37 : TTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TAAGT----------TATACAAT--T-G------TAT--TTATT---G----A-AAAT--CAT--taaactattaggtat
gi|38 : --G--CA-----CCCGGCCCA-TT-GGACCTATAAGTCACC----t
gi|39 : aaaaaacaaTC-TTAGA-GGTAGAATACCACATCTAAATTGGGCCAACAATGAACGTtaaactgttaggtataaactg
gi|4 : GTTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TAAGT----------TATACA----T-A------TATA-CAATT---A--ACA-AAAT--TAT--T--TG--G--CA-----CCCGGCCCA-TT-GGGCCTATATGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--AAATTCGTAAATAC-T-CTATTATAT-A-----CA--T--AAGTTAAATATGACGTACA-------A---AAT--CCTGACAAAATATTAGTAAAA-TATTCACTGAGTATCCAGT-ATTGTCAGTATGGAGTGTA----------------GTTATAAATATA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGATGTATTAAGTTTGACATAATATTTTACGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGAGAAGAAACTTTGCAAGTTGTCTTGGA---TGCGCTGATATGATATATGCA---AGTCG--TTAGTTTATAT---GCTTGTAA---GC--ATTA--TTTACAAA-TAAATCTCTGAAATT-GTTTTCTTGCAG-GTCATTATACAG-T-TCA-CACTGA
gi|4 : TCCTTAAAAAG--GCGATAT--GTTCTCAGTTTTAATATTCTT------TGA-ACGTCTTCTGACC----AGACATTAGAATA--ATA----GTT-TACTAG--T---A-ATCCATGTG-CTTGTGATAAGTCAATAAT-TGTTCTGTTTTC---GTAATTT-G-CGGAT---AACCCTAGCATAGACATAAC-GTG-TTTAATATCAT-GTG-ACCAATTATTTTTGCA-C--ATTAAATAGTCG-GAATTTAACAC--TTTTTTGT-AATCCGTCTGTCATCCATCAAAATCACTCTGTTCCA-CATACGCAACATGTTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccttaaaaaggcgatatgttctcagttttaatattctttgaacgtcttctgaccagacattagaataatagtttactagtaatccatgtgcttgtgataagtcaataattgttctgttttcgtaatttgcggataaccctagcatagacataacgtgtttaatatcatgtgaccaattatttttgcacattaaatagtcggaatttaacacttttttgtaatccgtctgtcatccatcaaaatcactctgttccacatacgcaacatgttt
gi|5 : gtttattattgtgacatgtgcatacattcattaagttatacatatatacaattaacaaaattatttggcacccggcccattgggcctatatgtcaccaggataatcaagaaagtaattatatacaaaattcgtaaatactctattatatacataagttaaatatgacgtacaaaatcctgacaaaatattagtaaaatattcactgagtatccagtattgtcagtatggagtgtagttataaatataataggaaaacaggcaatatatcatacatcaacaatacatgatgtattaagtttgacataatattttacgaaaacaagatatttcttctttttaagaaagcacagagaagaaactttgcaagttgtcttggatgcgctgatatgatatatgcaagtcgttagtttatatgcttgtaagcattatttacaaataaatctctgaaattgttttcttgcaggtcattatacagttcacactgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATGGAAAGTGTGTGACAAGATTTCATCTTCAATCTGAAGTAGATT-ACAAAGTGTG---AGTCTTTGCTCTCG--TTGCTCACCGACATATCGTCGCGTTTCAACTC-TTTGA-GGTAGAATACCACATCTAAATTGGGTCAACAATGAACGTTCCTG--T-TTGT-TAA-ATTTTAAAACCATATATTGTTCAAGTTCAAATTTATTTTTAAA--A--GTAACATAAGTCTGCAATTTAGGCATC--T------TGCTACTTCTACCTTCC----AGATATTTGAGTA--GTATTTCGTTATCTTAG--TCTTA-A-CAATGT--CT----ATGTGT--ATAAC-AGTTTTGTTTTCAAAATAGTTC-ATCAGATTTAAAT-------TGGACAAAACTGT--TTTCAGATCATTGT--ACCAATTATGTTTACA-C--TTGTTATAGTTC-ATGTTAAAGAC-ACGCCTGGT-TAGCCTATTGTCATCAAACAATACAAGTCTGTTCCAGTAT-CGTATCATTGCTACCCAACGGCGATAACAACTAGGAAGCCATCCCGCACATGCGGTGATTGCAAGTTTCGGGGC------AAATCTGTGTACGCCAAGAAAGTACCGTAAAGCACGATTCTGTACATTGTC---TG---------GTAATGTTTGAATCCCCATACTGATGCACAGTAGTCCAATATTGGTACAAAACACGATTCAAATA-GTCTTTTGGTAG--TTTAATATCTTTTCCAAG-GTATAAGTCATTTAT
gi|6 : ttattatagtgatatgtgtacAGATAAG---ATACTGTTTATTATT-GTGACATGCG-----ACAT-TCAT-TATGT----------TGTACA----T-A------TATA-CAACT---G--ATA-AA----TAT--A--TG--G--CA-----CCCAGCCCA-TT-GGGCTAATATGCCACC----A-GATTAAT-CAAGAAAG---TAAT----TATAT------AGA--TGATTCGTGAATAC-TGCTATGATAT-A-----CA--T--ATGTTAACTTTTAAGTACATGTACGTA---AAT--GCTGACAAAATATTAGCAAAA-TATT-TCTGTGTATTTAAT-ATTGGTAGTATGGACGATAGTTATTGTA-ATTTTTTTTATAAATATA-ATAAGAAT-ATTGACAATAGATCATACATCAACAAAACATGAACTATAAAGTCTGACGTAATAGTTTACAAAAACATCACATTTCTCCTTTTTATGAAAGCACAGACAAACAA------AGGTTTTCTCGGA---TGCGCTGATATGATATGTGAA---AGTCG--GT-GTTTATAT---GCATGTTA---GCAAATTAATCTTA-AAA-T--ATCTAT---ATA-GTTt
gi|7 : tATA---AGAGAAGAGAA----ATATTGTTTAT-ATTCGT--TATGT-TAT--ACAT-ACA----AAT----------TAT-CA----T-A------CATA---ATT---G--ACA-AAAT--TAT--A--TG--G--CA-----CCCGGACCA-TTTGAATTTATATGCCACC----A-GGTTATT-CAAGAGAG---TAATAAACTATAT------ATA--CCATTCGTAAATAC-TGTTAGTATAT-AGTTAACT--T--AT-TTAACTATGAAGTTCA-------A---ACT--CCTGACTAAGTATTTGCAAAAATATTCCCTGTGTATTTGAC-ATTGTTTGTATGAACGGTAATTATGGTAAA--TTTGTTATAAATACA-ATAAGACT-ACTTGCAATAGTTCATACATCAACAATACA----GTAT-------GACATAATAGTTGACGAAGACAAGATATTACATCTTTTTAAGAAAGCACAGACAAGACATTTTGCAAGTTTTCTTGGA---TGCGCCGATATAATCTGTGAG---ACTC---CTGGTTTATATGTAGCATGTTA---GC--AATA--TCTACAAA-TAAATCTCTGAAATA-GTTTTCTCGCAG-GCCATTATACAG-T-TCA-CACTGAAATAGGAAGCGC-T-------TCGTATCTTCggcaaacgccattttctgtttcgttgactgcaattagtatttgccttactaagttctatatctgaccctgaaaagtgcaca
gi|8 : TACTTCTTCTTCTCATGTAAGCATATACAATATATTTAGCTACTTTTCTGGGAACGTGTG-TGACAAGAAATACACATTTAGCCATACTA-TCCATAC----CAT-TAAACTGC--AT-A--TTTGAAAA-TTGTTCATTCAAAAT-GTCTGCT-GTAATATCATTGTAAAA-TGT-A-CATTAGATCAAAAAATGA-T-------TTTCATCTTCAATCTGAAGTAGATT-ACAAATTGTGCAGAGTCTTTGCTCTCG--CGGCTCACCGACATATCGTCCCGTTTCTATTC-TTAGT-GGTAA--------------ATTGGGCCAACAATGAACGTTCCTG--T-TTGC-TCA-AATTTAAAAGCACATATTGTTCGAATTCAAATTTATCTTTAAA-AGTTAC-ATAA--GTCCGTAATTTAGGCACTCTTACTACATAA-AC--CTTC----C----AGATATTTGAGTA--GTA----TTC-CGTTAGCTT---A-GTCTAAACAATTT-TTATGTGT--ATAAC-AGTTTTGTTTTCAAAATAGTTT-ATCAGAT------TCGAAT-TGGACATAAC--TGTTTTCAGATCAC-TAC-ACCAATTACTTTttgtactcaaatatcagacaa
gi|9 : AAATAAGTAAGTAAG-TAAGTAAATATT--TTATTAAA-GTGACATGTGCAT--ACA----ATATATGT----------TACAAA----T-AGTTG--TATA-CAA--------ACA-AAAA--CA-------A--G--CA-----CCCGGCCCA-TT-GGACCTATAAGTCACC----
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): ATTTGTAAGTAAGTATGTAAGTAAGTTTTTATTATAAAAACGTGTGTAAATTTATAACATAATATGTTAATATGCAGTTTTTACAGAACACAATCGGCCCAATGGACCTAGTCACATATATAAATAT
Unaligned ( gi|27 ): AATACTTCTTCATGTGTTAATAATATTTAAAAAAAATATACAAATTGTTTAAAAAATGTGTCATGTGATAACAATATTGGATGTATTTTAAGTACGTTAAAAGGACGTGGCTAACTGTTTTA
Unaligned ( gi|28 ): TAAGTATGTAGATATTGACATGTGCATGACAATACAATAACATGCAAAATGATATGTGGAGCACTAAGGCCTAACAGGCATATAATAATTCGCTACCAAAAAACAAAAATGTCATTCCAT
Unaligned ( gi|29 ): TAAGGTGACAGGTACACATGTAACATGACATATATTTGGAACACACACACGATGGAACCATAACAGATACTATCTTAGACAAGCATCATTAAATCATTCATTATGGTTAGACACTAAA
Unaligned ( gi|33 ): ACCTTCCAGATATTTGAGTAATAGTCCGTTATCTTGGTCTTAACGATATCTATGTGTATAACAGATTTGTTTTCAAAAAAGTTTATCAGATT
Unaligned ( gi|36 ): GTCACTTCCAATAAATAGAAGTAATATGAAATTCATATGATAATAATCAACATAATAGACTATTGTAGGTACACATTTGCAT
Alignments
lowQualScore : 111 111 111111 111 11 11111 11111111111 1111 1111111 1 222 1 11 111111 1111 2222 1 111 11 3333 11 222 111 2222222222222 11111 111111 11 222222 222222222222 1 1 222 222 1 11
lowQualScore : 111 0 000 2 1 44 333 3 1 88888888888 22 1 999999 1 555555 1 777 666666 22 44444 33 1 555555 44 444 5555 888888 000 3 33 22222 3 6666666 1 33333333333 55 4 1 4 1 1111 2 4 0 5 1 0 0 1 3 888 1 888 66 0 888 777 66 1 66 4 0 0 55 5 0 5 6666666 4 1 1 7 0 1 1 77 0 2 0 5 1 88 4 55 0 22 0 22 1 222 8 5 5 7777 1 1 1 1 333 1 3 1 55 6 888 1 1 1 666666 5 4 0 5 2222 1 77 0000 1 77 000 5 1 22 1111 3 55 5 1 888 444 4444444444444 11111 1 111111 6 99 3 6 22 6 1 6 3 3 333333 1 1 3 1 1 0 555555555555 1 1 0 1 1 1 1 4 1 1 0 0 0 1 555 1 000 5 88 22
lowQualScore : ... . ... . . .. ... . . ........... .. . ...... . ...... . ... ...... .. ..... .. . ...... .. ... .... ...... ... . .. ..... . ....... . ........... .. . . . . .... . . . . . . . . . ... . ... .. . ... ... .. . .. . . . .. . . . ....... . . . . . . . .. . . . . . .. . .. . .. . .. . ... . . . .... . . . . ... . . . .. . ... . . . ...... . . . . .... . .. .... . .. ... . . .. .... . .. . . ... ... ............. ..... . ...... . .. . . .. . . . . . ...... . . . . . . ............ . . . . . . . . . . . . . . ... . ... . .. ..
lowQualScore : 888 8 000 0 5 55 777 8 0 77777777777 55 8 333333 8 000000 7 888 222222 44 33333 88 0 555555 22 777 7777 888888 222 6 99 77777 6 7777777 9 44444444444 55 0 0 4 9 2222 3 4 2 7 3 2 1 4 2 888 0 888 99 2 888 888 11 9 11 4 8 1 44 0 2 0 2222222 2 0 4 9 3 6 0 99 7 7 8 0 0 66 2 22 1 00 2 00 1 999 9 7 7 1111 0 4 0 0 888 0 7 4 77 6 444 3 0 0 444444 7 3 1 1 1111 0 99 0000 4 99 000 7 4 33 3333 0 00 7 7 444 000 7777777777777 88888 0 444444 7 22 2 7 77 7 0 7 2 8 000000 0 4 2 4 4 8 000000000000 4 0 6 0 0 0 0 2 0 2 0 0 2 0 000 0 555 5 55 00
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCAAATA--TAGATAAGATAAG---ATATTGTTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TANGT----------TATACA--T-A------TATA-CAATT---G--ACA-AAAT--TAT--A--TGG--CA-----CCCGGCCCA-TTGGGCCTATANGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--NAATTCGTAAATAC-TGCTATTATAT-----A-CA--T--AGGTTAACTATGACGTACA-------A---AAT--CCTGACAAAATATTAGT-AAAATATTCCCTGNGTATCCAAT-ATTGTCAGTATGGAGTGTAGTTATGATAGA--TATGTTATAAATACA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGAGGTATTAAGTCTGACATAATAGTTTACGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGACAAGAAACTTTGCAAGTTGTCTTGGA---TGCGCTGATATGATATGTGNA---AGTCG--CTGGTTTATAT---GCATGTAA---GC--ATTA--TTTACAAA-TAAATCTCTGAAATN-GTTTTCTCGCAG-GTCATTATACAGTTCACACTGAAATAGAAAGTGT-T-------TCTCATCTTCNA-CTGAATTTGACTGACAAAGTCTACAAAGTCTCTGATCNGG--TTGCTCCCCGACATACCTTCCGGTTTCAATTC-TNAGT-GGTAAGATACCACNTCTAAATTGGNNCAACANNGAGCGTTCATG--TCTTGT-TTA-AGTTTATCANAACGTANTNCTCGCGTTCAAANTTTTCCTTAAACAG--GCGATAT--GTCCTCAGTTTNGACATNCTT------TGA-ACGTCTTCTGACC----AGACATTNGAGTA--ATA----GTT-TACTAG--T---A-ATCCATGTG-CTT-TGATGNGTCAATAAC-TGTTCTGTTTTCAAAGTAGTTT-G-CGGAT---AACCCCAGCATAGACATAAC-GTG-TTTAANATCAC-GTG-ACCAATTATTTTTGCA-C--TTTAAATAGTCG-GAATTAAACAC-TTTTTTTGT-AATCCGTCTGTCATCCATCAAAATCACTCTGTTCCA-CATACGCAACATGTTTCCCCATCGTCTGTAAACACTTGGTATCCACCCGGTATCCCCAATCATCGCGAGAATTGGCGT------GAANCGATGAACGCCAAGAAAGTATCGTATAGCTCGATTCTGAACGTTGTC---TGTA-TGT-TGATACTGTTTGAATCCCCATACTGANGAACAATAGTCNAGGATNGGCACAANACACGANTCGNATA-GT-TTTTCGNAG--TTTAATNTCTTTTCCAAGAGTATAAGTNNTTTAT
Reference ( family-717 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCAAATA--TAGATAAGATAAG---ATATTGTTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TANGT----------TATACA--T-A------TATA-CAATT---G--ACA-AAAT--TAT--A--TGG--CA-----CCCGGCCCA-TTGGGCCTATANGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--NAATTCGTAAATAC-TGCTATTATAT-----A-CA--T--AGGTTAACTATGACGTACA-------A---AAT--CCTGACAAAATATTAGT-AAAATATTCCCTGNGTATCCAAT-ATTGTCAGTATGGAGTGTAGTTATGATAGA--TATGTTATAAATACA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGAGGTATTAAGTCTGACATAATAGTTTACGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGACAAGAAACTTTGCAAGTTGTCTTGGA---TGCGCTGATATGATATGTGNA---AGTCG--CTGGTTTATAT---GCATGTAA---GC--ATTA--TTTACAAA-TAAATCTCTGAAATN-GTTTTCTCGCAG-GTCATTATACAGTTCACACTGAAATAGAAAGTGT-T-------TCTCATCTTCNA-CTGAATTTGACTGACAAAGTCTACAAAGTCTCTGATCNGG--TTGCTCCCCGACATACCTTCCGGTTTCAATTC-TNAGT-GGTAAGATACCACNTCTAAATTGGNNCAACANNGAGCGTTCATG--TCTTGT-TTA-AGTTTATCANAACGTANTNCTCGCGTTCAAANTTTTCCTTAAACAG--GCGATAT--GTCCTCAGTTTNGACATNCTT------TGA-ACGTCTTCTGACC----AGACATTNGAGTA--ATA----GTT-TACTAG--T---A-ATCCATGTG-CTT-TGATGNGTCAATAAC-TGTTCTGTTTTCAAAGTAGTTT-G-CGGAT---AACCCCAGCATAGACATAAC-GTG-TTTAANATCAC-GTG-ACCAATTATTTTTGCA-C--TTTAAATAGTCG-GAATTAAACAC-TTTTTTTGT-AATCCGTCTGTCATCCATCAAAATCACTCTGTTCCA-CATACGCAACATGTTTCCCCATCGTCTGTAAACACTTGGTATCCACCCGGTATCCCCAATCATCGCGAGAATTGGCGT------GAANCGATGAACGCCAAGAAAGTATCGTATAGCTCGATTCTGAACGTTGTC---TGTA-TGT-TGATACTGTTTGAATCCCCATACTGANGAACAATAGTCNAGGATNGGCACAANACACGANTCGNATA-GT-TTTTCGNAG--TTTAATNTCTTTTCCAAGAGTATAAGTNNTTTAT
gi|1 : TCCAAATA--TAGATAAGATTAG---ATATTGTTTATTATT-GTGACATGTGCAT--ACTT-TCTT-CAAGT----------TATACA--T-A------GATA-CAATT---G--ACA-CAAT--TAT--T--TGG--CA-----CCAGACCCT-TTGGGCCTATATGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--AAATTCGTAAATAC-T-TTATTATAT-----A-CA--T--TGGTTAACTATGACGTACA-------A---CAT--CCTGACAAAATATTGGT-AAAATGTTCCCTGAGTATCCAAT-ATTGTCAGTATGGAGTGTAGTTATGATAAG--TTTGTTATAAATATA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGAGGTATTAAGTATGACATAATAGTTTACGAAAACAAGATATTTCTTCTTTTTAAGGAAGCACAGACAAGAAACTTTGCAAGTTGTCTTGGA---TGCGCTGATATGATAGGTGGA---AGTCG--CTGGTTTATAT---GAATGTAA---GC--ATTA--TTTACAAA-TAATTCTCTGAAATA-GTTTTCTCGCAG-GTTATTATACAG-------TGAAATAGAAAGTGT-T-------TTTCATCTTCTA-CTAAATTTGACTGACAAAGTCTACAAAGTCTCTGATCAGG--TTGCTCCCCAACATACCTTCCGGTTTCAATTC-TGAGT-GGTAAGATACCAGTTCTGAATTGACACAATACAGAGCGTTCA----TTTTGT-TTA-AGTTTATCATAACATAGTCCTCACATTTAAATTTTTCCTTAAACAG--GCGATAT--ATTCTCAGTTTTGATATACTT------TGA-ACGTCTTCTGACC----AGACATTAGAATA--ATA----GTT-TACTAG--T---A-ATCCATGTG-CTTGTGATAAGTCAATGAT-TGTTCTGTTTTC---GTAATTT-G-CAGAT---AACCCCAGCATACACATAAC-GTG-TTTAATATCAT-GTG-ACTAATTATTTTTGTA-T--TTTAAAAAGTCG-AAAGTAAACACTTTTTTTTGT-AATCCGCCTGTCATCCATCAAAATCACTTTGTTCCA-CATACGCAACATGTTTCCCCATCGTCTGTAAACACTTGGTATCCACCCGATGTCCCCAATCATCGCAAGAATTGGCGT------GAAGAGATGAACACCAATACAGTATCTTATGGCTCTTTTCTGAACATTATC---TTTA-TGT-TGATACTTCTTGAATCTCCACACTGAGGAGCAATAGTCAAGGATAGGCACAACACATGATGTGTACA-GT-TTTTCGTAGGATTTGAACTCTTT---AAGAGTAT--GTATTTTAT
gi|10 : tgattatgtctattgattatgtcattaacaagcgatcttgctttctgcctaaatggtcatccgtgTACACATCAC-ATG-CATAATGTCAA-AAG-TCCAGTTATTTGTACAGCGGTT---ATAATCATGCAT-AAATAC-TTTCTTTGTCAGTCTAT-TATTATCCATGATAATAAGTCCATTCCA-AAACCGTAACATCCATGTCCATCGTCTGTACACGCTTGGTATCCAGCCAGTATCACC------CACGAGAGCTGATGTCGGCCCAAACCTACGTACGCCAAGGAAATAACGCATAGCTCGATTTTGGACGTTGTCAATCGT----T-TGAAACTGTCTATATCCCCATACTGATGCACAGTAGTCTAGGATCGGCACAACACACGAATTGTAAA-GT-TTTTCAAActataattccaccaagtgcacggcctgctgctttcccgagcgattcactagtgtacattaagtggttcttttcatggaaaataacccctagatatttgtata
gi|11 : cgagttTA--TAGATGAGATAAG---ATATTGTTTATCATT-GTGACATGTGCAT--ACAT-TCAT-TAAGT----------TATACA--T-A------TATA-CAATT---G--ACA-AAAT--CAT--T--TGG--CA-----CCCGGCCAT-TTCGGCCTATATGTCACC----A-GGATAAT----GAAAG---TAAT----TATAT------ACA--CAATTCGTAAATAC-T-CTATTATAT-----A-CA--T--AGGTTAACTATGATGTACA-------A---AAT--CCTGACAAAATATTGGT-AAAATATTCCCTGAGTATCCAAT-ATTGTCAGTATGGAGTGTAGTTATGATAGA--TATGTTATAAATATATATAcgaacggaggatgtatttctttgttacttcttt
gi|12 : tgtaaaagtGATAAGATACG---ATATTGTTTATTATT-GTGACATGTGCAT--ACAT-TAAT-TATGT----------CGTACA--T-A------TATA-CAATT---G--ACA-AAGT--TAT--T--TGA--CA-----CCCTGCCCA-TTGGTCCAGTTTGTCATC----A-GGTTAAA-CAAGAAAG---TATT----TATAT------ACA--CAGTTCACAAGTAC-TGCTATTGTAT-----A-CA--T--AGGCTAACTATGAAGCATA-------A---AAT--GCTGACAAAATATTAGT-AAAATATTCCCTGTGTGTATAATAATTTT---TAT--AGT-TCG-TGTGAGCGAT-TATGTTATAAATACA-CTA--AAATGCAGGCAGTAGATCAAACCTTATCAATACATGAAGTATTAAATCTGACATAATAATGTGCGAAAACAtatccaatcatggttccaatatttaacatattaaactaatttgataaaaatatgataatt
gi|13 : GTTTCTACTC-TTAA--ACTAGAATACCACCTCTAAACTGGGTCAACAACAAACGTTCATGTTTCTTCTCTTAGAGGT----AGAATACATTGTTCAAGTTCAAAA-----AGTGAAAAGTTAC-ATAA--ATCCGCAATTTAGACACTCAT------TTA-----CTTCTG-CCTTCAAGTTGTTTGAGTAGCATATC--GTTATCTTAG--T---ATAGTGATGT--CT----ATGTGT--ATAACATATT-TGTTTTCAAAATAGTTTAA-CAGATTGAAAT-------TGGACGTGAC--TGTTTTCAAATCAC--TGCACCAATTATTTT
gi|14 : ctATAAG-TAAGT--AAATAGTTTATAATA-GTGGCATGTGCAT--GG----CAG-TACA------------ATA-A--T-A------TATG-CA-TT---G---CA-AAAT--GAT--AAATAG--TAGATGACCCGGCCCA-GTGGGCCTACAAGTCAC
gi|14 : CA-ATAG--TAG--A--TG----A-----CCCGGCCCA-GTGGGCCTATAAGTCACT----GCGAATAA------ATAG---AAGT----CATAT------GCA--tgccaataaatagaagtggtatgcaatagtagatgacccggcccagtgggcctataagtcactgcgaataaatagaagtcatatgcaatttcatttgataataagcaatgggacataaataggataatgtaggtaaactttcaaaggcacaaatgtaggtaaa
gi|15 : ataagtaagtaaatagtttataatagtggcatgtgcatggcagtacaataatatatgcattgcaaaatgataaatagtagatgacccggcccagtgggcctacaagtcactgccaataaatagaagtggtatgTTATTAAA-GTGACATGTG--T--ACAT-GTAA-CATG--------------ACA--T-A------TATA-TAATTTTAA--ACA-ACA----------------CA-----CCCGGCCCA-ATGGACCTATAAGTCACC-------TATA---CAAATAAA---CAAT----TATATTATTTCACATGAAATT-----ATGCTTGTTATTAAAC-----ACCA--TAAAAATGAATAAT-ATGTACA-------AGGTAATTACATAACAACATATTAAT-atttcatttgataataagcaatgggacataaataggataatgtaggtaaactttcaaaggcacaaatgtaggtaaa
gi|16 : aTTTTTTCTTTTTAAGAAAGCACAGACAAGATACTTTGCAAGATGTCTTGGA---TGCGCTGATATGATATGTGCA---AGTCG--TTGATTTATAT---GCTTGTAA---GC--ATTA--TTTACAAA--AAATCTCTGAAATT-GTTTTCTCGCAG-GTCATTATACAGTTCACACTGAAATAGAAAGTGT-T-------TTTCATCTACTA-CTGAATTTGACTGACAAAGTCTACAAAGTCTCTGATCAAG--TTGCTCCCCAACATACCTTCCGGTTTCAATTtacgattgtttgaaaagtcattggttatataatgtatttcttcttctcatgtaagccttaacaatatatttagctacttttct
gi|17 : TAA---AC--AT-A--TCAGCAAAGTA--TCT-TGAAACACATTTTCTCTGAT-ATTATTGTAAAGTCCACAATGTAACAGAAAATGT-T-------TCTCGTCTTCAA-CGGATCCTGTGTCACAGAATCTTCATAGTCTCTGTTCTGGAGTT--TCACCAATATACCTTCCAGTCTCTATTCTTAAATAGGTAAAATGCCACACCTAAATTGACACATAATAGATCTCTCGT---TTTTCT-TTA-AATTGGTTACACCATACT
gi|18 : TAGT-GGGACATCTG--T--ACAT-GTAT-CATGA----------CATACA--T-A------TACAGTATTT---GTAACA-ACA----------------CG-----CCGGGCCGA-GTGGAGCTATAAGTCACCTATAA-AGATAA------ATAG---TTAT----TAT-T------ACAT-TAAT--GTAATTA-----TATTATTTG----A-CA--T--Ag
gi|19 : aagtaagtaagtagtaagtaagtgagtcagta-GTGACATGTGCATCGACATATCAA-TAAA------------ACTCA----A------TAAA-CAATA---A--AAG-AGAC--TGA--A----G--CG-----TCCGGCCAA-ATGAACCTATAAGTCACT----ATGGACAATACAAAAtaagcatgtttgcaattaaacatcatcaaacaatccaattgaatggttgcatgcatgttttaaaa
gi|2 : caaaTTCAAACA--T---TAAGATAAG---ATATTGTTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TAAGC----------TATACA--T-A------TATA-CAACT---G--ACA-CACT--TAT--T--TGG--CA-----CCCGGTTCA-TTGGGCCTATATGTCAAT----A-GGATAAT-ATAGAAAG---TAAT----TATAT------ACA--AAATTCGTATATAC-TG-TATAATAT-----A-CA------GGTTAACTATGACATACA-------C---AGT--CCTGACAAAATATAAGC-AAAATATTCCCGGAGTATCCAAT-ATTGTCAGTATTGAGTCTAGTTATGATAGA--TATGATATAAATACA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGAGGTATTAAGTCTGACATAATAGTTGGCGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGATAAGAAACTTTGCAAGTTGTCTTGAA---TCCGCTGACATGATATGTGGA---AGTCG--CTGGTTTATAT---ACATGTAA---GC--ATTA--TCTACAAA-TAAATCTCTGAAATT-GTTTTCTCGCAG-GTCATTATACAGTTTACACTGAAATAGAAAGTGT-T-------TCTCATTTTCTA-CTGAGTTTAACTGACAAAGTCTACAAAGTCTCTAATTAGG--TTGTTCCCATATAAATCTTCCGGTTTCAATTC-TCAGT-GGTAAGATACCAGTTC-----TGACAAAATACAGAGCATGCAT---TCTTAT-TTA-AGTTCATCATAACGTAGTCCTCGCATTTGATGTGTTTCTTAAACAG--GCGATAT--GTTCTCTGATTTGATATACTT------TGA-ACGTCTTCTGACC----AGACATTAGAATT--ATA----ATT-CACTAG--T---A-ATCCATGTG-CTTATGATGAGTCAATTAT-TGTTCTGTTTTC---GTAATTT-G-CGGAT---TACCCCAGCGCAGACATTAC-GGG-TTTAAAATCAT-GTG-ACCAATTATTTTTGCA-C--ATTAAATAATCG-AAATTAAACAC-CTTTTTCGT-AATCAGTCTGTCATCCATCAAAACCACTTTGTGACC-CATATGCAACATGTTTCCCCATCGTCTGCAAACACTTGGTATCCACCCGGTATCCCCAATCATCTCGAAAATTGGCGT------GAAACGATGAAcatcatatttaaaacatgacatcatcggttttgacgatattaaattctatttaatatacaaaaatgttatgctatatgtaaacgtgtcttttaacaaataatactgataactttaattatactgtt
gi|20 : caattatacattctattttttatgtacgtcacatattcttatttgttaaaattattatTTATTATA-GTGACATGTGCA---A-AT-GCAT-AACAT----------TATATA--T-AAA----TATG-CAATT---A--ACACAGA----AC--A-------CA-----CCCGGCCCA-ATGGACCTTTAAGTCACC----ta
gi|21 : GATAAGATCAA---TTATTGTTTATTATT-GTGACATGTGCAC--ACAT-TCAT-CATGTTATATATATATATATA--T-A------TATA-CAATT---G--ACA-AAAG--TTT--A--TGG--CA--------------------CTTATATGTCGCC----A-AGATAAT-CAAGAAAGTTATAAT----TAT---------------ATTC-TAA------GGTATTATTT-----A-CAGTT--A--TTAACTtatatgaatgtacatacacatataccctaatgtactatatattaagcatgcttgaaataatacatgtttgattacaattcgatataacagtttgtgcatttcgtctgtttgaaactggtt
gi|22 : AGATATGATAAG---ATATTGTTTATCATT-GTGACATATGCAT--ACAT-TCAT-TATTT----------TATGCG--T-ATATTATTATA-CAGTT---G--ACA-AAAT--TAT--A--TGG--TA-----ACTGGCCCATTTGGGTTTATATGTCACC----A-GGGTCAT-CAAGAAAC---TAAG----TA
gi|23 : TATTGTTTATCATT-GTAACAT-------------TCAC-TATGT----------TAAACA--T-AATTA--TATA-CAATT---G--ACA-AAAT--TAT--A--TGG--CA-----TCCGA-CCA-TTGGGCCTTTATGCCACC----A-GCATATG-TAAAAGGA---CATT----TATAT------
gi|24 : GCCAAGAAAGTATCATAAAGCACGATGTTGAATGTTG-----TGTATTGTCTGACGCTGTATGAAACCTTATACGGCAGAACAACGGTCTAATATTGGAATGAGGCCTGAATGAAATATAT-TATTTGAA---TCCAATGTCTTTgaatatcccctttcaatattg
gi|25 : t---ATATT--TTATTAAT-GTGACATGTGCATG-ATAT-ACAT-GACAA----------TA-ACA--C-G-------ATA-CAAAT---A--AGA-AAATAATAA--A--TAT--CA-----CCTGGTCCA-CTGCGCTTTTCGGTCAT---------ATAAT-TATGGAA----TAGT----T
gi|3 : gtaagtaaatacTT-GTGACATGTGCGT--ACAT-TTAT-TAAGT----------TATACA--T-A------TACA-CAATT---G--ACA-AAAT--TAT--T--TGG--CA-----CCCGGCACA-TTGGGCCTATATGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--AAATTCGTAAATAC-T-CTATTATAT-----A-CA--T--AGGTTAACTATGACGTACA-------A---AAT--CCTGACAAAATATTAGT-AAAATATTCCCTGTGTATCCAAT-ATTGTCAGCATGGAGTATAGT-ATGATAGA--TATGTTATACATATA-ATAGGAAA-ACAGGCAATATATCATAAATCAATACTACATGAGGTATTA-------------------CGAAAACAAGGTATTTCTTCTTTTTAAGAAAACACAGACAAGAAACTTTGCAAGTTGTCTTAGA---TGCGCTGATATGATATGTGCT---AGTCG--TTGGTTTACAT---GTATGTAA---AC--ATTA--TTTACAAA-TAAATCTCTGGAATT-GTTTTCTCGCAG-GTCATTACACAGTTAACACTGAAATAGAAAGTGT-T-------T-TCATCTTCTA-CTGAATTTGACTGACAAAGTCTACAAAGTCACTGATCAGG--TTGCTCCCCAACATACCTTCCGGTTTCAATTC-TGAGT-GGCAAGATACTAGTTCTAAATTGACACAAAACAGAGCGTCCAT---TCTTGT-TTA-AGTTCATCATAATGTAATCCTCACATTTAAAATTTTCCTTAAACAG--GCGATGC--GTTCTCAGTTTTGATATACTT------TGA-ACGTCTTCTGACC----AGACATTAGAATA--ATA----GTT-TACTAG--T---A-ATCCATGTG-CTT-------GTTAATAAT-TGTTCTGTTTTC---GTGATTT-G-CGGAT---AACCCCAGCATAGACATAAC-ATG-TTTAATATCAT-GTG-ACCAATTATTTTTGCA-C--TTTAAATAGTCG-GAATTAAACAC-TTTTTTTGT-AATCCATCTGTACTCAATCAAAATCACTCTATTTGA-CATACGCAACATGTTTCCCCATCGTCTGTAAACACTTGGTATCCACCCGGTGTCCCCAACCATCGCGAGAATTGGCGT------GAAGCGATGAACACCAAGAAAGTATCTCATGGCTCTATTCTGAACATTATC---TATA-TGT-TGATACTTCTTGATACACCACACTGAGGAGGAATAGTCGAGGATGGGCACAATACA
gi|30 : ATGT----------TATACA--TTA------TGTA-CAATT---T--ACA-AAAT--TGT--A--TGG--CA-----CCCAGCCCA-TTGGGCCTCTATGTCACC----
gi|31 : acaacaatacttacaacattgtgtttataaatggtaaaaaatgctttgCATCAACAATATATCAGGTATTAAGTCTGATATAATAGTTAACGAAAACAAGACATTTCTTCTTTTTAAGAAAGCAGAGACAAGAAAC
gi|32 : GTACA-------A---AAT--CCTGATAAAATATTAGT-AAAATATTCACTGTGTATTTAAT-ATTGTCAGTATGGACGGTAATTTTGTTAAG--AATGTTATAAATACA-ATAGAAgtgtttaattgtt
gi|34 : TTGTGTATTAAA-GTGACATGTG--T--GCA----AC-AAAAT----------TATA-G--T-A------ATTA-C-ATT-------CA-AATT--TATCAA--TGGCACA-----CCCGACCAG-ATGGACCTA
gi|35 : TGTGCAT--ACA----ATGTATAT----------TACAAA--T-AGTTA--TATA-CAA--------AAA-AAA----AA--A--AG------------CGGCCCA-TTGGACCTATAAGTCACC----aatc
gi|37 : TTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TAAGT----------TATACAATT-G------TAT--TTATT---G----A-AAAT--CAT--taaactattaggtat
gi|38 : G--CA-----CCCGGCCCA-TTGGACCTATAAGTCACC----t
gi|39 : aaaaaacaaTC-TTAGA-GGTAGAATACCACATCTAAATTGGGCCAACAATGAACGTtaaactgttaggtataaactg
gi|4 : GTTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TAAGT----------TATACA--T-A------TATA-CAATT---A--ACA-AAAT--TAT--T--TGG--CA-----CCCGGCCCA-TTGGGCCTATATGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--AAATTCGTAAATAC-T-CTATTATAT-----A-CA--T--AAGTTAAATATGACGTACA-------A---AAT--CCTGACAAAATATTAGT-AAAATATTCACTGAGTATCCAGT-ATTGTCAGTATGGAGTGTAGTTAT----------------AAATATA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGATGTATTAAGTTTGACATAATATTTTACGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGAGAAGAAACTTTGCAAGTTGTCTTGGA---TGCGCTGATATGATATATGCA---AGTCG--TTAGTTTATAT---GCTTGTAA---GC--ATTA--TTTACAAA-TAAATCTCTGAAATT-GTTTTCTTGCAG-GTCATTATACAGTTCACACTGA
gi|4 : TCCTTAAAAAG--GCGATAT--GTTCTCAGTTTTAATATTCTT------TGA-ACGTCTTCTGACC----AGACATTAGAATA--ATA----GTT-TACTAG--T---A-ATCCATGTG-CTTGTGATAAGTCAATAAT-TGTTCTGTTTTC---GTAATTT-G-CGGAT---AACCCTAGCATAGACATAAC-GTG-TTTAATATCAT-GTG-ACCAATTATTTTTGCA-C--ATTAAATAGTCG-GAATTTAACAC--TTTTTTGT-AATCCGTCTGTCATCCATCAAAATCACTCTGTTCCA-CATACGCAACATGTTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccttaaaaaggcgatatgttctcagttttaatattctttgaacgtcttctgaccagacattagaataatagtttactagtaatccatgtgcttgtgataagtcaataattgttctgttttcgtaatttgcggataaccctagcatagacataacgtgtttaatatcatgtgaccaattatttttgcacattaaatagtcggaatttaacacttttttgtaatccgtctgtcatccatcaaaatcactctgttccacatacgcaacatgttt
gi|5 : gtttattattgtgacatgtgcatacattcattaagttatacatatatacaattaacaaaattatttggcacccggcccattgggcctatatgtcaccaggataatcaagaaagtaattatatacaaaattcgtaaatactctattatatacataagttaaatatgacgtacaaaatcctgacaaaatattagtaaaatattcactgagtatccagtattgtcagtatggagtgtagttataaatataataggaaaacaggcaatatatcatacatcaacaatacatgatgtattaagtttgacataatattttacgaaaacaagatatttcttctttttaagaaagcacagagaagaaactttgcaagttgtcttggatgcgctgatatgatatatgcaagtcgttagtttatatgcttgtaagcattatttacaaataaatctctgaaattgttttcttgcaggtcattatacagttcacactgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATGGAAAGTGTGTGACAAGATTTCATCTTCAATCTGAAGTAGATT-ACAAAGTGTG---AGTCTTTGCTCTCG--TTGCTCACCGACATATCGTCGCGTTTCAACTC-TTTGA-GGTAGAATACCACATCTAAATTGGGTCAACAATGAACGTTCCTG--T-TTGT-TAA-ATTTTAAAACCATATATTGTTCAAGTTCAAATTTATTTTTAAA--A--GTAACATAAGTCTGCAATTTAGGCATC--T------TGCTACTTCTACCTTCC----AGATATTTGAGTA--GTATTTCGTTATCTTAG--TCTTA-A-CAATGT--CT----ATGTGT--ATAAC-AGTTTTGTTTTCAAAATAGTTC-ATCAGATTTAAAT-------TGGACAAAACTGT--TTTCAGATCATTGT--ACCAATTATGTTTACA-C--TTGTTATAGTTC-ATGTTAAAGAC-ACGCCTGGT-TAGCCTATTGTCATCAAACAATACAAGTCTGTTCCAGTAT-CGTATCATTGCTACCCAACGGCGATAACAACTAGGAAGCCATCCCGCACATGCGGTGATTGCAAGTTTCGGGGC------AAATCTGTGTACGCCAAGAAAGTACCGTAAAGCACGATTCTGTACATTGTC---TG---------GTAATGTTTGAATCCCCATACTGATGCACAGTAGTCCAATATTGGTACAAAACACGATTCAAATA-GTCTTTTGGTAG--TTTAATATCTTTTCCAAG-GTATAAGTCATTTAT
gi|6 : ttattatagtgatatgtgtacAGATAAG---ATACTGTTTATTATT-GTGACATGCG-----ACAT-TCAT-TATGT----------TGTACA--T-A------TATA-CAACT---G--ATA-AA----TAT--A--TGG--CA-----CCCAGCCCA-TTGGGCTAATATGCCACC----A-GATTAAT-CAAGAAAG---TAAT----TATAT------AGA--TGATTCGTGAATAC-TGCTATGATAT-----A-CA--T--ATGTTAACTTTTAAGTACATGTACGTA---AAT--GCTGACAAAATATTAGC-AAAATATT-TCTGTGTATTTAAT-ATTGGTAGTATGGACGATAGTTATTGTA-ATTTTTTTTATAAATATA-ATAAGAAT-ATTGACAATAGATCATACATCAACAAAACATGAACTATAAAGTCTGACGTAATAGTTTACAAAAACATCACATTTCTCCTTTTTATGAAAGCACAGACAAACAA------AGGTTTTCTCGGA---TGCGCTGATATGATATGTGAA---AGTCG--GT-GTTTATAT---GCATGTTA---GCAAATTAATCTTA-AAA-T--ATCTAT---ATA-GTTt
gi|7 : tATA---AGAGAAGAGAA----ATATTGTTTA-TATTCGT--TATGT-TAT--ACAT-AC----AAAT----------TAT-CA--T-A------CAT---AATT---G--ACA-AAAT--TAT--A--TGG--CA-----CCCGGACCATTTGAATTTATATGCCACC----A-GGTTATT-CAAGAGAG---TAATAAACTATAT------ATA--CCATTCGTAAATAC-TGTTAGTATATAGTTAA-CT--T--A-TTTAACTATGAAGTTCA-------A---ACT--CCTGACTAAGTATTTGCAAAAATATTCCCTGTGTATTTGAC-ATTGTTTGTATGAACGGTAATTATGGTAAA--TTTGTTATAAATACA-ATAAGACT-ACTTGCAATAGTTCATACATCAACAATACA----GTA-------TGACATAATAGTTGACGAAGACAAGATATTACATCTTTTTAAGAAAGCACAGACAAGACATTTTGCAAGTTTTCTTGGA---TGCGCCGATATAATCTGTGAG---ACTC---CTGGTTTATATGTAGCATGTTA---GC--AATA--TCTACAAA-TAAATCTCTGAAATA-GTTTTCTCGCAG-GCCATTATACAGTTCACACTGAAATAGGAAGCGC-T-------TCGTATCTTCggcaaacgccattttctgtttcgttgactgcaattagtatttgccttactaagttctatatctgaccctgaaaagtgcaca
gi|8 : TACTTCTTCTTCTCATGTAAGCATATACAATATATTTAGCTACTTTTCTGGGAACGTGTG-TGACAAGAAATACACATTTAGCCATACTA-TCCATAC----CAT-TAAACTGC--AT-A--TTTGAAAA-TTGTTCATTCAAAAT-GTCTGCT-GTAATATCATTGTAAAATGTACATTAGATCAAAAAATGA-T-------TTTCATCTTCAATCTGAAGTAGATT-ACAAATTGTGCAGAGTCTTTGCTCTCG--CGGCTCACCGACATATCGTCCCGTTTCTATTC-TTAGT-GGTAA--------------ATTGGGCCAACAATGAACGTTCCTG--T-TTGC-TCA-AATTTAAAAGCACATATTGTTCGAATTCAAATTTATCTTTAAA-AGTTAC-ATAA--GTCCGTAATTTAGGCACTCTTACTACATAA-AC--CTTC----C----AGATATTTGAGTA--GTA----TTC-CGTTAGCTT---A-GTCTAAACAATTT-TTATGTGT--ATAAC-AGTTTTGTTTTCAAAATAGTTT-ATCAGAT------TCGAAT-TGGACATAAC--TGTTTTCAGATCAC-TAC-ACCAATTACTTTttgtactcaaatatcagacaa
gi|9 : AAATAAGTAAGTAAG-TAAGTAAATATT--TTATTAAA-GTGACATGTGCAT--ACA----ATATATGT----------TACAAA--T-AGTTG--TATA-CAA--------ACA-AAA----AC--A---AG--CA-----CCCGGCCCA-TTGGACCTATAAGTCACC----
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): ATTTGTAAGTAAGTATGTAAGTAAGTTTTTATTATAAAAACGTGTGTAAATTTATAACATAATATGTTAATATGCAGTTTTTACAGAACACAATCGGCCCAATGGACCTAGTCACATATATAAATAT
Unaligned ( gi|27 ): AATACTTCTTCATGTGTTAATAATATTTAAAAAAAATATACAAATTGTTTAAAAAATGTGTCATGTGATAACAATATTGGATGTATTTTAAGTACGTTAAAAGGACGTGGCTAACTGTTTTA
Unaligned ( gi|28 ): TAAGTATGTAGATATTGACATGTGCATGACAATACAATAACATGCAAAATGATATGTGGAGCACTAAGGCCTAACAGGCATATAATAATTCGCTACCAAAAAACAAAAATGTCATTCCAT
Unaligned ( gi|29 ): TAAGGTGACAGGTACACATGTAACATGACATATATTTGGAACACACACACGATGGAACCATAACAGATACTATCTTAGACAAGCATCATTAAATCATTCATTATGGTTAGACACTAAA
Unaligned ( gi|33 ): ACCTTCCAGATATTTGAGTAATAGTCCGTTATCTTGGTCTTAACGATATCTATGTGTATAACAGATTTGTTTTCAAAAAAGTTTATCAGATT
Unaligned ( gi|36 ): GTCACTTCCAATAAATAGAAGTAATATGAAATTCATATGATAATAATCAACATAATAGACTATTGTAGGTACACATTTGCAT
Alignments
lowQualScore : 111 111 111111 111 11 11111 11111111111 1111 1111111 1 222 1 11 111111 1111 2222 1 111 11 3333 11 222 111 2222222222222 11111 111111 11 222222 222222222222 1 1 222 222 1 11
lowQualScore : 111 0 000 2 1 44 333 3 1 88888888888 22 1 999999 1 555555 1 777 666666 22 44444 33 1 555555 44 444 5555 888888 000 3 33 22222 3 6666666 1 33333333333 55 4 1 4 1 1111 2 4 0 5 1 0 0 1 3 888 1 888 66 0 888 777 66 1 66 4 0 0 55 5 0 5 6666666 4 1 1 7 0 1 1 77 0 2 0 5 1 88 4 55 0 22 0 22 1 222 8 5 5 7777 1 1 1 1 333 1 3 1 55 6 888 1 1 1 666666 5 4 0 5 2222 1 77 0000 1 77 000 5 1 22 1111 3 55 5 1 888 444 4444444444444 11111 1 111111 6 99 3 6 22 6 1 6 3 3 333333 1 1 3 1 1 0 555555555555 1 1 0 1 1 1 1 4 1 1 0 0 0 1 555 1 000 5 88 22
lowQualScore : ... . ... . . .. ... . . ........... .. . ...... . ...... . ... ...... .. ..... .. . ...... .. ... .... ...... ... . .. ..... . ....... . ........... .. . . . . .... . . . . . . . . . ... . ... .. . ... ... .. . .. . . . .. . . . ....... . . . . . . . .. . . . . . .. . .. . .. . .. . ... . . . .... . . . . ... . . . .. . ... . . . ...... . . . . .... . .. .... . .. ... . . .. .... . .. . . ... ... ............. ..... . ...... . .. . . .. . . . . . ...... . . . . . . ............ . . . . . . . . . . . . . . ... . ... . .. ..
lowQualScore : 888 8 000 0 5 55 777 8 0 77777777777 55 8 333333 8 000000 7 888 222222 44 33333 88 0 555555 22 777 7777 888888 222 6 99 77777 6 7777777 9 44444444444 55 0 0 4 9 2222 3 4 2 7 3 2 1 4 2 888 0 888 99 2 888 888 11 9 11 4 8 1 44 0 2 0 2222222 2 0 4 9 3 6 0 99 7 7 8 0 0 66 2 22 1 00 2 00 1 999 9 7 7 1111 0 4 0 0 888 0 7 4 77 6 444 3 0 0 444444 7 3 1 1 1111 0 99 0000 4 99 000 7 4 33 3333 0 00 7 7 444 000 7777777777777 88888 0 444444 7 22 2 7 77 7 0 7 2 8 000000 0 4 2 4 4 8 000000000000 4 0 6 0 0 0 0 2 0 2 0 0 2 0 000 0 555 5 55 00
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCAAATA--TAGATAAGATAAG---ATATTGTTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TANGT----------TATACA--T-A------TATA-CAATT---G--ACA-AAAT--TAT--A--TGG--CA-----CCCGGCCCA-TTGGGCCTATANGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--NAATTCGTAAATAC-TGCTATTATAT-----A-CA--T--AGGTTAACTATGACGTACA-------A---AAT--CCTGACAAAATATTAGT-AAAATATTCCCTGNGTATCCAAT-ATTGTCAGTATGGAGTGTAGTTATGATAGA--TATGTTATAAATACA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGAGGTATTAAGTCTGACATAATAGTTTACGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGACAAGAAACTTTGCAAGTTGTCTTGGA---TGCGCTGATATGATATGTGNA---AGTCG--CTGGTTTATAT---GCATGTAA---GC--ATTA--TTTACAAA-TAAATCTCTGAAATN-GTTTTCTCGCAG-GTCATTATACAGTTCACACTGAAATAGAAAGTGT-T-------TCTCATCTTCNA-CTGAATTTGACTGACAAAGTCTACAAAGTCTCTGATCNGG--TTGCTCCCCGACATACCTTCCGGTTTCAATTC-TNAGT-GGTAAGATACCACNTCTAAATTGGNNCAACANNGAGCGTTCATG--TCTTGT-TTA-AGTTTATCANAACGTANTNCTCGCGTTCAAANTTTTCCTTAAACAG--GCGATAT--GTCCTCAGTTTNGACATNCTT------TGA-ACGTCTTCTGACC----AGACATTNGAGTA--ATA----GTT-TACTAG--T---A-ATCCATGTG-CTT-TGATGNGTCAATAAC-TGTTCTGTTTTCAAAGTAGTTT-G-CGGAT---AACCCCAGCATAGACATAAC-GTG-TTTAANATCAC-GTG-ACCAATTATTTTTGCA-C--TTTAAATAGTCG-GAATTAAACAC-TTTTTTTGT-AATCCGTCTGTCATCCATCAAAATCACTCTGTTCCA-CATACGCAACATGTTTCCCCATCGTCTGTAAACACTTGGTATCCACCCGGTATCCCCAATCATCGCGAGAATTGGCGT------GAANCGATGAACGCCAAGAAAGTATCGTATAGCTCGATTCTGAACGTTGTC---TGTA-TGT-TGATACTGTTTGAATCCCCATACTGANGAACAATAGTCNAGGATNGGCACAANACACGANTCGNATA-GT-TTTTCGNAG--TTTAATNTCTTTTCCAAGAGTATAAGTNNTTTAT
Reference ( family-717 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCAAATA--TAGATAAGATAAG---ATATTGTTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TANGT----------TATACA--T-A------TATA-CAATT---G--ACA-AAAT--TAT--A--TGG--CA-----CCCGGCCCA-TTGGGCCTATANGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--NAATTCGTAAATAC-TGCTATTATAT-----A-CA--T--AGGTTAACTATGACGTACA-------A---AAT--CCTGACAAAATATTAGT-AAAATATTCCCTGNGTATCCAAT-ATTGTCAGTATGGAGTGTAGTTATGATAGA--TATGTTATAAATACA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGAGGTATTAAGTCTGACATAATAGTTTACGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGACAAGAAACTTTGCAAGTTGTCTTGGA---TGCGCTGATATGATATGTGNA---AGTCG--CTGGTTTATAT---GCATGTAA---GC--ATTA--TTTACAAA-TAAATCTCTGAAATN-GTTTTCTCGCAG-GTCATTATACAGTTCACACTGAAATAGAAAGTGT-T-------TCTCATCTTCNA-CTGAATTTGACTGACAAAGTCTACAAAGTCTCTGATCNGG--TTGCTCCCCGACATACCTTCCGGTTTCAATTC-TNAGT-GGTAAGATACCACNTCTAAATTGGNNCAACANNGAGCGTTCATG--TCTTGT-TTA-AGTTTATCANAACGTANTNCTCGCGTTCAAANTTTTCCTTAAACAG--GCGATAT--GTCCTCAGTTTNGACATNCTT------TGA-ACGTCTTCTGACC----AGACATTNGAGTA--ATA----GTT-TACTAG--T---A-ATCCATGTG-CTT-TGATGNGTCAATAAC-TGTTCTGTTTTCAAAGTAGTTT-G-CGGAT---AACCCCAGCATAGACATAAC-GTG-TTTAANATCAC-GTG-ACCAATTATTTTTGCA-C--TTTAAATAGTCG-GAATTAAACAC-TTTTTTTGT-AATCCGTCTGTCATCCATCAAAATCACTCTGTTCCA-CATACGCAACATGTTTCCCCATCGTCTGTAAACACTTGGTATCCACCCGGTATCCCCAATCATCGCGAGAATTGGCGT------GAANCGATGAACGCCAAGAAAGTATCGTATAGCTCGATTCTGAACGTTGTC---TGTA-TGT-TGATACTGTTTGAATCCCCATACTGANGAACAATAGTCNAGGATNGGCACAANACACGANTCGNATA-GT-TTTTCGNAG--TTTAATNTCTTTTCCAAGAGTATAAGTNNTTTAT
gi|1 : TCCAAATA--TAGATAAGATTAG---ATATTGTTTATTATT-GTGACATGTGCAT--ACTT-TCTT-CAAGT----------TATACA--T-A------GATA-CAATT---G--ACA-CAAT--TAT--T--TGG--CA-----CCAGACCCT-TTGGGCCTATATGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--AAATTCGTAAATAC-T-TTATTATAT-----A-CA--T--TGGTTAACTATGACGTACA-------A---CAT--CCTGACAAAATATTGGT-AAAATGTTCCCTGAGTATCCAAT-ATTGTCAGTATGGAGTGTAGTTATGATAAG--TTTGTTATAAATATA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGAGGTATTAAGTATGACATAATAGTTTACGAAAACAAGATATTTCTTCTTTTTAAGGAAGCACAGACAAGAAACTTTGCAAGTTGTCTTGGA---TGCGCTGATATGATAGGTGGA---AGTCG--CTGGTTTATAT---GAATGTAA---GC--ATTA--TTTACAAA-TAATTCTCTGAAATA-GTTTTCTCGCAG-GTTATTATACAG-------TGAAATAGAAAGTGT-T-------TTTCATCTTCTA-CTAAATTTGACTGACAAAGTCTACAAAGTCTCTGATCAGG--TTGCTCCCCAACATACCTTCCGGTTTCAATTC-TGAGT-GGTAAGATACCAGTTCTGAATTGACACAATACAGAGCGTTCA----TTTTGT-TTA-AGTTTATCATAACATAGTCCTCACATTTAAATTTTTCCTTAAACAG--GCGATAT--ATTCTCAGTTTTGATATACTT------TGA-ACGTCTTCTGACC----AGACATTAGAATA--ATA----GTT-TACTAG--T---A-ATCCATGTG-CTTGTGATAAGTCAATGAT-TGTTCTGTTTTC---GTAATTT-G-CAGAT---AACCCCAGCATACACATAAC-GTG-TTTAATATCAT-GTG-ACTAATTATTTTTGTA-T--TTTAAAAAGTCG-AAAGTAAACACTTTTTTTTGT-AATCCGCCTGTCATCCATCAAAATCACTTTGTTCCA-CATACGCAACATGTTTCCCCATCGTCTGTAAACACTTGGTATCCACCCGATGTCCCCAATCATCGCAAGAATTGGCGT------GAAGAGATGAACACCAATACAGTATCTTATGGCTCTTTTCTGAACATTATC---TTTA-TGT-TGATACTTCTTGAATCTCCACACTGAGGAGCAATAGTCAAGGATAGGCACAACACATGATGTGTACA-GT-TTTTCGTAGGATTTGAACTCTTT---AAGAGTAT--GTATTTTAT
gi|10 : tgattatgtctattgattatgtcattaacaagcgatcttgctttctgcctaaatggtcatccgtgTACACATCAC-ATG-CATAATGTCAA-AAG-TCCAGTTATTTGTACAGCGGTT---ATAATCATGCAT-AAATAC-TTTCTTTGTCAGTCTAT-TATTATCCATGATAATAAGTCCATTCCA-AAACCGTAACATCCATGTCCATCGTCTGTACACGCTTGGTATCCAGCCAGTATCACC------CACGAGAGCTGATGTCGGCCCAAACCTACGTACGCCAAGGAAATAACGCATAGCTCGATTTTGGACGTTGTCAATCGT----T-TGAAACTGTCTATATCCCCATACTGATGCACAGTAGTCTAGGATCGGCACAACACACGAATTGTAAA-GT-TTTTCAAActataattccaccaagtgcacggcctgctgctttcccgagcgattcactagtgtacattaagtggttcttttcatggaaaataacccctagatatttgtata
gi|11 : cgagttTA--TAGATGAGATAAG---ATATTGTTTATCATT-GTGACATGTGCAT--ACAT-TCAT-TAAGT----------TATACA--T-A------TATA-CAATT---G--ACA-AAAT--CAT--T--TGG--CA-----CCCGGCCAT-TTCGGCCTATATGTCACC----A-GGATAAT----GAAAG---TAAT----TATAT------ACA--CAATTCGTAAATAC-T-CTATTATAT-----A-CA--T--AGGTTAACTATGATGTACA-------A---AAT--CCTGACAAAATATTGGT-AAAATATTCCCTGAGTATCCAAT-ATTGTCAGTATGGAGTGTAGTTATGATAGA--TATGTTATAAATATATATAcgaacggaggatgtatttctttgttacttcttt
gi|12 : tgtaaaagtGATAAGATACG---ATATTGTTTATTATT-GTGACATGTGCAT--ACAT-TAAT-TATGT----------CGTACA--T-A------TATA-CAATT---G--ACA-AAGT--TAT--T--TGA--CA-----CCCTGCCCA-TTGGTCCAGTTTGTCATC----A-GGTTAAA-CAAGAAAG---TATT----TATAT------ACA--CAGTTCACAAGTAC-TGCTATTGTAT-----A-CA--T--AGGCTAACTATGAAGCATA-------A---AAT--GCTGACAAAATATTAGT-AAAATATTCCCTGTGTGTATAATAATTTT---TAT--AGT-TCG-TGTGAGCGAT-TATGTTATAAATACA-CTA--AAATGCAGGCAGTAGATCAAACCTTATCAATACATGAAGTATTAAATCTGACATAATAATGTGCGAAAACAtatccaatcatggttccaatatttaacatattaaactaatttgataaaaatatgataatt
gi|13 : GTTTCTACTC-TTAA--ACTAGAATACCACCTCTAAACTGGGTCAACAACAAACGTTCATGTTTCTTCTCTTAGAGGT----AGAATACATTGTTCAAGTTCAAAA-----AGTGAAAAGTTAC-ATAA--ATCCGCAATTTAGACACTCAT------TTA-----CTTCTG-CCTTCAAGTTGTTTGAGTAGCATATC--GTTATCTTAG--T---ATAGTGATGT--CT----ATGTGT--ATAACATATT-TGTTTTCAAAATAGTTTAA-CAGATTGAAAT-------TGGACGTGAC--TGTTTTCAAATCAC--TGCACCAATTATTTT
gi|14 : ctATAAG-TAAGT--AAATAGTTTATAATA-GTGGCATGTGCAT--GG----CAG-TACA------------ATA-A--T-A------TATG-CA-TT---G---CA-AAAT--GAT--AAATAG--TAGATGACCCGGCCCA-GTGGGCCTACAAGTCAC
gi|14 : CA-ATAG--TAG--A--TG----A-----CCCGGCCCA-GTGGGCCTATAAGTCACT----GCGAATAA------ATAG---AAGT----CATAT------GCA--tgccaataaatagaagtggtatgcaatagtagatgacccggcccagtgggcctataagtcactgcgaataaatagaagtcatatgcaatttcatttgataataagcaatgggacataaataggataatgtaggtaaactttcaaaggcacaaatgtaggtaaa
gi|15 : ataagtaagtaaatagtttataatagtggcatgtgcatggcagtacaataatatatgcattgcaaaatgataaatagtagatgacccggcccagtgggcctacaagtcactgccaataaatagaagtggtatgTTATTAAA-GTGACATGTG--T--ACAT-GTAA-CATG--------------ACA--T-A------TATA-TAATTTTAA--ACA-ACA----------------CA-----CCCGGCCCA-ATGGACCTATAAGTCACC-------TATA---CAAATAAA---CAAT----TATATTATTTCACATGAAATT-----ATGCTTGTTATTAAAC-----ACCA--TAAAAATGAATAAT-ATGTACA-------AGGTAATTACATAACAACATATTAAT-atttcatttgataataagcaatgggacataaataggataatgtaggtaaactttcaaaggcacaaatgtaggtaaa
gi|16 : aTTTTTTCTTTTTAAGAAAGCACAGACAAGATACTTTGCAAGATGTCTTGGA---TGCGCTGATATGATATGTGCA---AGTCG--TTGATTTATAT---GCTTGTAA---GC--ATTA--TTTACAAA--AAATCTCTGAAATT-GTTTTCTCGCAG-GTCATTATACAGTTCACACTGAAATAGAAAGTGT-T-------TTTCATCTACTA-CTGAATTTGACTGACAAAGTCTACAAAGTCTCTGATCAAG--TTGCTCCCCAACATACCTTCCGGTTTCAATTtacgattgtttgaaaagtcattggttatataatgtatttcttcttctcatgtaagccttaacaatatatttagctacttttct
gi|17 : TAA---AC--AT-A--TCAGCAAAGTA--TCT-TGAAACACATTTTCTCTGAT-ATTATTGTAAAGTCCACAATGTAACAGAAAATGT-T-------TCTCGTCTTCAA-CGGATCCTGTGTCACAGAATCTTCATAGTCTCTGTTCTGGAGTT--TCACCAATATACCTTCCAGTCTCTATTCTTAAATAGGTAAAATGCCACACCTAAATTGACACATAATAGATCTCTCGT---TTTTCT-TTA-AATTGGTTACACCATACT
gi|18 : TAGT-GGGACATCTG--T--ACAT-GTAT-CATGA----------CATACA--T-A------TACAGTATTT---GTAACA-ACA----------------CG-----CCGGGCCGA-GTGGAGCTATAAGTCACCTATAA-AGATAA------ATAG---TTAT----TAT-T------ACAT-TAAT--GTAATTA-----TATTATTTG----A-CA--T--Ag
gi|19 : aagtaagtaagtagtaagtaagtgagtcagta-GTGACATGTGCATCGACATATCAA-TAAA------------ACTCA----A------TAAA-CAATA---A--AAG-AGAC--TGA--A----G--CG-----TCCGGCCAA-ATGAACCTATAAGTCACT----ATGGACAATACAAAAtaagcatgtttgcaattaaacatcatcaaacaatccaattgaatggttgcatgcatgttttaaaa
gi|2 : caaaTTCAAACA--T---TAAGATAAG---ATATTGTTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TAAGC----------TATACA--T-A------TATA-CAACT---G--ACA-CACT--TAT--T--TGG--CA-----CCCGGTTCA-TTGGGCCTATATGTCAAT----A-GGATAAT-ATAGAAAG---TAAT----TATAT------ACA--AAATTCGTATATAC-TG-TATAATAT-----A-CA------GGTTAACTATGACATACA-------C---AGT--CCTGACAAAATATAAGC-AAAATATTCCCGGAGTATCCAAT-ATTGTCAGTATTGAGTCTAGTTATGATAGA--TATGATATAAATACA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGAGGTATTAAGTCTGACATAATAGTTGGCGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGATAAGAAACTTTGCAAGTTGTCTTGAA---TCCGCTGACATGATATGTGGA---AGTCG--CTGGTTTATAT---ACATGTAA---GC--ATTA--TCTACAAA-TAAATCTCTGAAATT-GTTTTCTCGCAG-GTCATTATACAGTTTACACTGAAATAGAAAGTGT-T-------TCTCATTTTCTA-CTGAGTTTAACTGACAAAGTCTACAAAGTCTCTAATTAGG--TTGTTCCCATATAAATCTTCCGGTTTCAATTC-TCAGT-GGTAAGATACCAGTTC-----TGACAAAATACAGAGCATGCAT---TCTTAT-TTA-AGTTCATCATAACGTAGTCCTCGCATTTGATGTGTTTCTTAAACAG--GCGATAT--GTTCTCTGATTTGATATACTT------TGA-ACGTCTTCTGACC----AGACATTAGAATT--ATA----ATT-CACTAG--T---A-ATCCATGTG-CTTATGATGAGTCAATTAT-TGTTCTGTTTTC---GTAATTT-G-CGGAT---TACCCCAGCGCAGACATTAC-GGG-TTTAAAATCAT-GTG-ACCAATTATTTTTGCA-C--ATTAAATAATCG-AAATTAAACAC-CTTTTTCGT-AATCAGTCTGTCATCCATCAAAACCACTTTGTGACC-CATATGCAACATGTTTCCCCATCGTCTGCAAACACTTGGTATCCACCCGGTATCCCCAATCATCTCGAAAATTGGCGT------GAAACGATGAAcatcatatttaaaacatgacatcatcggttttgacgatattaaattctatttaatatacaaaaatgttatgctatatgtaaacgtgtcttttaacaaataatactgataactttaattatactgtt
gi|20 : caattatacattctattttttatgtacgtcacatattcttatttgttaaaattattatTTATTATA-GTGACATGTGCA---A-AT-GCAT-AACAT----------TATATA--T-AAA----TATG-CAATT---A--ACACAGA----AC--A-------CA-----CCCGGCCCA-ATGGACCTTTAAGTCACC----ta
gi|21 : GATAAGATCAA---TTATTGTTTATTATT-GTGACATGTGCAC--ACAT-TCAT-CATGTTATATATATATATATA--T-A------TATA-CAATT---G--ACA-AAAG--TTT--A--TGG--CA--------------------CTTATATGTCGCC----A-AGATAAT-CAAGAAAGTTATAAT----TAT---------------ATTC-TAA------GGTATTATTT-----A-CAGTT--A--TTAACTtatatgaatgtacatacacatataccctaatgtactatatattaagcatgcttgaaataatacatgtttgattacaattcgatataacagtttgtgcatttcgtctgtttgaaactggtt
gi|22 : AGATATGATAAG---ATATTGTTTATCATT-GTGACATATGCAT--ACAT-TCAT-TATTT----------TATGCG--T-ATATTATTATA-CAGTT---G--ACA-AAAT--TAT--A--TGG--TA-----ACTGGCCCATTTGGGTTTATATGTCACC----A-GGGTCAT-CAAGAAAC---TAAG----TA
gi|23 : TATTGTTTATCATT-GTAACAT-------------TCAC-TATGT----------TAAACA--T-AATTA--TATA-CAATT---G--ACA-AAAT--TAT--A--TGG--CA-----TCCGA-CCA-TTGGGCCTTTATGCCACC----A-GCATATG-TAAAAGGA---CATT----TATAT------
gi|24 : GCCAAGAAAGTATCATAAAGCACGATGTTGAATGTTG-----TGTATTGTCTGACGCTGTATGAAACCTTATACGGCAGAACAACGGTCTAATATTGGAATGAGGCCTGAATGAAATATAT-TATTTGAA---TCCAATGTCTTTgaatatcccctttcaatattg
gi|25 : t---ATATT--TTATTAAT-GTGACATGTGCATG-ATAT-ACAT-GACAA----------TA-ACA--C-G-------ATA-CAAAT---A--AGA-AAATAATAA--A--TAT--CA-----CCTGGTCCA-CTGCGCTTTTCGGTCAT---------ATAAT-TATGGAA----TAGT----T
gi|3 : gtaagtaaatacTT-GTGACATGTGCGT--ACAT-TTAT-TAAGT----------TATACA--T-A------TACA-CAATT---G--ACA-AAAT--TAT--T--TGG--CA-----CCCGGCACA-TTGGGCCTATATGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--AAATTCGTAAATAC-T-CTATTATAT-----A-CA--T--AGGTTAACTATGACGTACA-------A---AAT--CCTGACAAAATATTAGT-AAAATATTCCCTGTGTATCCAAT-ATTGTCAGCATGGAGTATAGT-ATGATAGA--TATGTTATACATATA-ATAGGAAA-ACAGGCAATATATCATAAATCAATACTACATGAGGTATTA-------------------CGAAAACAAGGTATTTCTTCTTTTTAAGAAAACACAGACAAGAAACTTTGCAAGTTGTCTTAGA---TGCGCTGATATGATATGTGCT---AGTCG--TTGGTTTACAT---GTATGTAA---AC--ATTA--TTTACAAA-TAAATCTCTGGAATT-GTTTTCTCGCAG-GTCATTACACAGTTAACACTGAAATAGAAAGTGT-T-------T-TCATCTTCTA-CTGAATTTGACTGACAAAGTCTACAAAGTCACTGATCAGG--TTGCTCCCCAACATACCTTCCGGTTTCAATTC-TGAGT-GGCAAGATACTAGTTCTAAATTGACACAAAACAGAGCGTCCAT---TCTTGT-TTA-AGTTCATCATAATGTAATCCTCACATTTAAAATTTTCCTTAAACAG--GCGATGC--GTTCTCAGTTTTGATATACTT------TGA-ACGTCTTCTGACC----AGACATTAGAATA--ATA----GTT-TACTAG--T---A-ATCCATGTG-CTT-------GTTAATAAT-TGTTCTGTTTTC---GTGATTT-G-CGGAT---AACCCCAGCATAGACATAAC-ATG-TTTAATATCAT-GTG-ACCAATTATTTTTGCA-C--TTTAAATAGTCG-GAATTAAACAC-TTTTTTTGT-AATCCATCTGTACTCAATCAAAATCACTCTATTTGA-CATACGCAACATGTTTCCCCATCGTCTGTAAACACTTGGTATCCACCCGGTGTCCCCAACCATCGCGAGAATTGGCGT------GAAGCGATGAACACCAAGAAAGTATCTCATGGCTCTATTCTGAACATTATC---TATA-TGT-TGATACTTCTTGATACACCACACTGAGGAGGAATAGTCGAGGATGGGCACAATACA
gi|30 : ATGT----------TATACA--TTA------TGTA-CAATT---T--ACA-AAAT--TGT--A--TGG--CA-----CCCAGCCCA-TTGGGCCTCTATGTCACC----
gi|31 : acaacaatacttacaacattgtgtttataaatggtaaaaaatgctttgCATCAACAATATATCAGGTATTAAGTCTGATATAATAGTTAACGAAAACAAGACATTTCTTCTTTTTAAGAAAGCAGAGACAAGAAAC
gi|32 : GTACA-------A---AAT--CCTGATAAAATATTAGT-AAAATATTCACTGTGTATTTAAT-ATTGTCAGTATGGACGGTAATTTTGTTAAG--AATGTTATAAATACA-ATAGAAgtgtttaattgtt
gi|34 : TTGTGTATTAAA-GTGACATGTG--T--GCA----AC-AAAAT----------TATA-G--T-A------ATTA-C-ATT-------CA-AATT--TATCAA--TGGCACA-----CCCGACCAG-ATGGACCTA
gi|35 : TGTGCAT--ACA----ATGTATAT----------TACAAA--T-AGTTA--TATA-CAA--------AAA-AAA----AA--A--AG------------CGGCCCA-TTGGACCTATAAGTCACC----aatc
gi|37 : TTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TAAGT----------TATACAATT-G------TAT--TTATT---G----A-AAAT--CAT--taaactattaggtat
gi|38 : G--CA-----CCCGGCCCA-TTGGACCTATAAGTCACC----t
gi|39 : aaaaaacaaTC-TTAGA-GGTAGAATACCACATCTAAATTGGGCCAACAATGAACGTtaaactgttaggtataaactg
gi|4 : GTTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TAAGT----------TATACA--T-A------TATA-CAATT---A--ACA-AAAT--TAT--T--TGG--CA-----CCCGGCCCA-TTGGGCCTATATGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--AAATTCGTAAATAC-T-CTATTATAT-----A-CA--T--AAGTTAAATATGACGTACA-------A---AAT--CCTGACAAAATATTAGT-AAAATATTCACTGAGTATCCAGT-ATTGTCAGTATGGAGTGTAGTTAT----------------AAATATA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGATGTATTAAGTTTGACATAATATTTTACGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGAGAAGAAACTTTGCAAGTTGTCTTGGA---TGCGCTGATATGATATATGCA---AGTCG--TTAGTTTATAT---GCTTGTAA---GC--ATTA--TTTACAAA-TAAATCTCTGAAATT-GTTTTCTTGCAG-GTCATTATACAGTTCACACTGA
gi|4 : TCCTTAAAAAG--GCGATAT--GTTCTCAGTTTTAATATTCTT------TGA-ACGTCTTCTGACC----AGACATTAGAATA--ATA----GTT-TACTAG--T---A-ATCCATGTG-CTTGTGATAAGTCAATAAT-TGTTCTGTTTTC---GTAATTT-G-CGGAT---AACCCTAGCATAGACATAAC-GTG-TTTAATATCAT-GTG-ACCAATTATTTTTGCA-C--ATTAAATAGTCG-GAATTTAACAC--TTTTTTGT-AATCCGTCTGTCATCCATCAAAATCACTCTGTTCCA-CATACGCAACATGTTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccttaaaaaggcgatatgttctcagttttaatattctttgaacgtcttctgaccagacattagaataatagtttactagtaatccatgtgcttgtgataagtcaataattgttctgttttcgtaatttgcggataaccctagcatagacataacgtgtttaatatcatgtgaccaattatttttgcacattaaatagtcggaatttaacacttttttgtaatccgtctgtcatccatcaaaatcactctgttccacatacgcaacatgttt
gi|5 : gtttattattgtgacatgtgcatacattcattaagttatacatatatacaattaacaaaattatttggcacccggcccattgggcctatatgtcaccaggataatcaagaaagtaattatatacaaaattcgtaaatactctattatatacataagttaaatatgacgtacaaaatcctgacaaaatattagtaaaatattcactgagtatccagtattgtcagtatggagtgtagttataaatataataggaaaacaggcaatatatcatacatcaacaatacatgatgtattaagtttgacataatattttacgaaaacaagatatttcttctttttaagaaagcacagagaagaaactttgcaagttgtcttggatgcgctgatatgatatatgcaagtcgttagtttatatgcttgtaagcattatttacaaataaatctctgaaattgttttcttgcaggtcattatacagttcacactgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATGGAAAGTGTGTGACAAGATTTCATCTTCAATCTGAAGTAGATT-ACAAAGTGTG---AGTCTTTGCTCTCG--TTGCTCACCGACATATCGTCGCGTTTCAACTC-TTTGA-GGTAGAATACCACATCTAAATTGGGTCAACAATGAACGTTCCTG--T-TTGT-TAA-ATTTTAAAACCATATATTGTTCAAGTTCAAATTTATTTTTAAA--A--GTAACATAAGTCTGCAATTTAGGCATC--T------TGCTACTTCTACCTTCC----AGATATTTGAGTA--GTATTTCGTTATCTTAG--TCTTA-A-CAATGT--CT----ATGTGT--ATAAC-AGTTTTGTTTTCAAAATAGTTC-ATCAGATTTAAAT-------TGGACAAAACTGT--TTTCAGATCATTGT--ACCAATTATGTTTACA-C--TTGTTATAGTTC-ATGTTAAAGAC-ACGCCTGGT-TAGCCTATTGTCATCAAACAATACAAGTCTGTTCCAGTAT-CGTATCATTGCTACCCAACGGCGATAACAACTAGGAAGCCATCCCGCACATGCGGTGATTGCAAGTTTCGGGGC------AAATCTGTGTACGCCAAGAAAGTACCGTAAAGCACGATTCTGTACATTGTC---TG---------GTAATGTTTGAATCCCCATACTGATGCACAGTAGTCCAATATTGGTACAAAACACGATTCAAATA-GTCTTTTGGTAG--TTTAATATCTTTTCCAAG-GTATAAGTCATTTAT
gi|6 : ttattatagtgatatgtgtacAGATAAG---ATACTGTTTATTATT-GTGACATGCG-----ACAT-TCAT-TATGT----------TGTACA--T-A------TATA-CAACT---G--ATA-AA----TAT--A--TGG--CA-----CCCAGCCCA-TTGGGCTAATATGCCACC----A-GATTAAT-CAAGAAAG---TAAT----TATAT------AGA--TGATTCGTGAATAC-TGCTATGATAT-----A-CA--T--ATGTTAACTTTTAAGTACATGTACGTA---AAT--GCTGACAAAATATTAGC-AAAATATT-TCTGTGTATTTAAT-ATTGGTAGTATGGACGATAGTTATTGTA-ATTTTTTTTATAAATATA-ATAAGAAT-ATTGACAATAGATCATACATCAACAAAACATGAACTATAAAGTCTGACGTAATAGTTTACAAAAACATCACATTTCTCCTTTTTATGAAAGCACAGACAAACAA------AGGTTTTCTCGGA---TGCGCTGATATGATATGTGAA---AGTCG--GT-GTTTATAT---GCATGTTA---GCAAATTAATCTTA-AAA-T--ATCTAT---ATA-GTTt
gi|7 : tATA---AGAGAAGAGAA----ATATTGTTTA-TATTCGT--TATGT-TAT--ACAT-AC----AAAT----------TAT-CA--T-A------CAT---AATT---G--ACA-AAAT--TAT--A--TGG--CA-----CCCGGACCATTTGAATTTATATGCCACC----A-GGTTATT-CAAGAGAG---TAATAAACTATAT------ATA--CCATTCGTAAATAC-TGTTAGTATATAGTTAA-CT--T--A-TTTAACTATGAAGTTCA-------A---ACT--CCTGACTAAGTATTTGCAAAAATATTCCCTGTGTATTTGAC-ATTGTTTGTATGAACGGTAATTATGGTAAA--TTTGTTATAAATACA-ATAAGACT-ACTTGCAATAGTTCATACATCAACAATACA----GTA-------TGACATAATAGTTGACGAAGACAAGATATTACATCTTTTTAAGAAAGCACAGACAAGACATTTTGCAAGTTTTCTTGGA---TGCGCCGATATAATCTGTGAG---ACTC---CTGGTTTATATGTAGCATGTTA---GC--AATA--TCTACAAA-TAAATCTCTGAAATA-GTTTTCTCGCAG-GCCATTATACAGTTCACACTGAAATAGGAAGCGC-T-------TCGTATCTTCggcaaacgccattttctgtttcgttgactgcaattagtatttgccttactaagttctatatctgaccctgaaaagtgcaca
gi|8 : TACTTCTTCTTCTCATGTAAGCATATACAATATATTTAGCTACTTTTCTGGGAACGTGTG-TGACAAGAAATACACATTTAGCCATACTA-TCCATAC----CAT-TAAACTGC--AT-A--TTTGAAAA-TTGTTCATTCAAAAT-GTCTGCT-GTAATATCATTGTAAAATGTACATTAGATCAAAAAATGA-T-------TTTCATCTTCAATCTGAAGTAGATT-ACAAATTGTGCAGAGTCTTTGCTCTCG--CGGCTCACCGACATATCGTCCCGTTTCTATTC-TTAGT-GGTAA--------------ATTGGGCCAACAATGAACGTTCCTG--T-TTGC-TCA-AATTTAAAAGCACATATTGTTCGAATTCAAATTTATCTTTAAA-AGTTAC-ATAA--GTCCGTAATTTAGGCACTCTTACTACATAA-AC--CTTC----C----AGATATTTGAGTA--GTA----TTC-CGTTAGCTT---A-GTCTAAACAATTT-TTATGTGT--ATAAC-AGTTTTGTTTTCAAAATAGTTT-ATCAGAT------TCGAAT-TGGACATAAC--TGTTTTCAGATCAC-TAC-ACCAATTACTTTttgtactcaaatatcagacaa
gi|9 : AAATAAGTAAGTAAG-TAAGTAAATATT--TTATTAAA-GTGACATGTGCAT--ACA----ATATATGT----------TACAAA--T-AGTTG--TATA-CAA--------ACA-AAA----AC--A---AG--CA-----CCCGGCCCA-TTGGACCTATAAGTCACC----
blockSeqs : AGT TAA C C CG TAT G A TTATATATATA AT T TATTAT G TTAA C TAA AAAT CA GATGA TT T TATAA TA TTA AAAC TATTTC TGA T GC AGTTA C TAAAA T TGTACGTA TA A A A G GAT A T T G C T ACG C TTT TA GTA ACT AA T AT G AC T G GACAAGA T T T G A A AG A T T TA A CC GT AC A GTT C C G GGTT G A T G AAG A T A TT G TAA G A T ACTACA T G A TTCA T GC TTTC A CT CTT T G AA TATG T CA A C AAA AA TACCCCAGCG ATG T AAAG G GG T T T C C G C A CGGCCC C T G T T TGTATTGTC T T T C C A T T A T C A G G TCC . AA CA
blockSeqs : T T . C G TT A T T . . ATTA . GTA . T CAAT . . TT T GC T . . . TT . GT G . GTTA A AGGT . . T . C ATT A . . T C G . G . . . . . T . . T . . . C A T C T T . A . A T A CA CA TA T G T . . CATC C A C C GCA G T C TT G A T T A . . G A . A . TC A . . . T G TGTG A TA . C AAA AT AACCCCAGCA TGT A CTGC . . T . C . C . A A . A A A A A AATCGTT A A T T G A G A T . . A . A
blockSeqs : T . . C . TT . C T . . GTTA . G . T TT . . T A AT A . . . C . GG . . TAG T A . . A . A GA A . . T C A . C . . . . . T . . T . . . C T . G A A . T . C T G GT CA CA G G C . . CATC T G G C ACA A A C . G T T T A . . G A . A . . . . . . T G TTT A CA . C AAA AT AACCCTAGCA GGG A TGTG . . T . T . C . A G . G A T T T TATATGT A G G G T T C A T . . T
blockSeqs : . . . C . TG . T A . . GTTG . G . T TT . . T A A T . . . C . GC . . TAG C A . . T . G GA A . . T T T . C . . . . . T . . T . . . T T . G A A . A . G A G GT CA CA G . C . . TAAA T G A G AAG T A A . A C T T T . . T T . A . . . . . . T G T T . . T . G TGAAAT ATG T TGTG . . G . A . T . A . . T T G A A TG T T C T A
blockSeqs : . . C . TG . T C . . AA . G . G AT . . G A A T . . . A . GT . . TAG C C . . T . G GA A . . G C T . A . . . . . T . . T . . . C A . . C T . G . T A A CA GC AT A . . . . TAAA C A T G GAA T . . . . T G A C . . . . . T . . . . . . T . . T . . T . G TTAAAT GTG T TGTG . . . . . . . . .
blockSeqs : . . C . TT . A T . . . . A . C TT . . G A A T . . . A . C . . TAA C A . . A . A AG T . . G . G . A . . . . . T . . A . . . T A . . C T . G . T T A CA GT AT A . . . . . G A T . . . A G A T . . . . . T . . . . . . . . . . . . . . G TCGAAT TGT G TTGT
blockSeqs : . . C . TG . A T . . . . G . T AT . . A A A G . . . A . G . . TAT A A . . T . G AA T . . . . C . . . . . . . . A . . . . . T . . . GC AT A TGT G CTAC
blockSeqs : . . C . TT . C T . . . . A . G AT . . G T A T . . . T . C . . TA A A . . T . . . . . . . . . . T
blockSeqs : . . C . TT . T A . . . . G . T AT . . A A A T . . . C . C . . G A . .
blockSeqs : . . C . TA . T T . . . . G . T AT . . T T A T . . . . . . . .
blockSeqs : . C . TT . T T . . . . G . T TT . . A T A T . . .
blockSeqs : . C . TT . C T . . . . A . T AT . . T T A T . . .
blockSeqs : . C . TT . A T . . . . G . T AA . . C G A . . .
blockSeqs : . T . TT . T T . . . . T . T TT . . T T . . . .
blockSeqs : . C . TA . A T . . . . G . T AT . . T T . .
blockSeqs : . . . T . T T . . . . A . T AT . . A A
blockSeqs : . . . . . A T . . . . G . . A . . T A
blockSeqs : . . . . . A T . . . . G . . A . . T T
blockSeqs : . . . . . T . . . . . . . . A . . T T
blockSeqs : . . . . A . . . . . . . . . . . T T
blockSeqs : T . . . . . . . . . . . T A
blockSeqs : . . . . .
blockSeqCons : GC A* AAA G** T*
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCAAATA--TAGATAAGATAAG---ATATTGTTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TANGT----------TATACA--T-A------TATA-CAATT---G--ACA-AAAT--TAT--A--TGG--CA-----CCCGGCCCA-TTGGGCCTATANGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--NAATTCGTAAATAC-TGCTATTATAT-----A-CA--T--AGGTTAACTATGACGTACA-------A---AAT--CCTGACAAAATATTAGT-AAAATATTCCCTGNGTATCCAAT-ATTGTCAGTATGGAGTGTAGTTATGATAGA--TATGTTATAAATACA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGAGGTATTAAGTCTGACATAATAGTTTACGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGACAAGAAACTTTGCAAGTTGTCTTGGA---TGCGCTGATATGATATGTGNA---AGTCG--CTGGTTTATAT---GCATGTAA---GC--ATTA--TTTACAAA-TAAATCTCTGAAATN-GTTTTCTCGCAG-GTCATTATACAGTTCACACTGAAATAGAAAGTGT-T-------TCTCATCTTCNA-CTGAATTTGACTGACAAAGTCTACAAAGTCTCTGATCNGG--TTGCTCCCCGACATACCTTCCGGTTTCAATTC-TNAGT-GGTAAGATACCACNTCTAAATTGGNNCAACANNGAGCGTTCATG--TCTTGT-TTA-AGTTTATCANAACGTANTNCTCGCGTTCAAANTTTTCCTTAAACAG--GCGATAT--GTCCTCAGTTTNGACATNCTT------TGA-ACGTCTTCTGACC----AGACATTNGAGTA--ATA----GTT-TACTAG--T---A-ATCCATGTG-CTT-TGATGNGTCAATAAC-TGTTCTGTTTTCAAAGTAGTTT-G-CGGAT---AACCCCAGCATAGACATAAC-GTG-TTTAANATCAC-GTG-ACCAATTATTTTTGCA-C--TTTAAATAGTCG-GAATTAAACAC-TTTTTTTGT-AATCCGTCTGTCATCCATCAAAATCACTCTGTTCCA-CATACGCAACATGTTTCCCCATCGTCTGTAAACACTTGGTATCCACCCGGTATCCCCAATCATCGCGAGAATTGGCGT------GAANCGATGAACGCCAAGAAAGTATCGTATAGCTCGATTCTGAACGTTGTC---TGTA-TGT-TGATACTGTTTGAATCCCCATACTGANGAACAATAGTCNAGGATNGGCACAANACACGANTCGNATA-GT-TTTTCGNAG--TTTAATNTCTTTTCCAAGAGTATAAGTNNTTTAT
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCAAATA--TAGATAAGATAAG---ATATTGTTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TANGT----------TATACA--T-A------TATA-CAATT---G--ACA-AAAT--TAT--A--TGG--CA-----CCCGGCCCA-TTGGGCCTATANGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--NAATTCGTAAATAC-TGCTATTATAT-----A-CA--T--AGGTTAACTATGACGTACA-------A---AAT--CCTGACAAAATATTAGT-AAAATATTCCCTGNGTATCCAAT-ATTGTCAGTATGGAGTGTAGTTATGATAGA--TATGTTATAAATACA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGAGGTATTAAGTCTGACATAATAGTTTACGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGACAAGAAACTTTGCAAGTTGTCTTGGA---TGCGCTGATATGATATGTGNA---AGTCG--CTGGTTTATAT---GCATGTAA---GC--ATTA--TTTACAAA-TAAATCTCTGAAATN-GTTTTCTCGCAG-GTCATTATACAGTTCACACTGAAATAGAAAGTGT-T-------TCTCATCTTCNA-CTGAATTTGACTGACAAAGTCTACAAAGTCTCTGATCNGG--TTGCTCCCCGACATACCTTCCGGTTTCAATTC-TNAGT-GGTAAGATACCACNTCTAAATTGGNNCAACANNGAGCGTTCATG--TCTTGT-TTA-AGTTTATCANAACGTANTNCTCGCGTTCAAANTTTTCCTTAAACAG--GCGATAT--GTCCTCAGTTTNGACATNCTT------TGA-ACGTCTTCTGACC----AGACATTNGAGTA--ATA----GTT-TACTAG--T---A-ATCCATGTG-CTT-TGATGNGTA-ATAAC-TGTTCTGTTTTCAAAGTAGTTTG--CGGAT---AACCCCAGCATAGACATAAC-GTG-TTTAANATCAC-GTG-ACCAATTATTTTTGCA-C--TTTAAATAGTCG-GAATTAAACACT-TTTTTTGT-AATCCGTCTGTCATCCATCAAAATCACTCTGTTCCA-CATACGCAACATGTTTCCCCATCGTCTGTAAACACTTGGTATCCACCCGGTATCCCCAATCATCGCGAGAATTGGCGT------GAANCGATGAACGCCAAGAAAGTATCGTATAGCTCGATTCTGAACGTTGTC---TGTA-TGT-TGATACTGTTTGAATCCCCATACTGANGAACAATAGTCNAGGATNGGCACAANACACGANTCGNATA-GT-TTTTCGNAG--TTTAATNTCTTTTCCAAGAGTATAAGTNNTTTAT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): ATTTGTAAGTAAGTATGTAAGTAAGTTTTTATTATAAAAACGTGTGTAAATTTATAACATAATATGTTAATATGCAGTTTTTACAGAACACAATCGGCCCAATGGACCTAGTCACATATATAAATAT
Unaligned ( gi|27 ): AATACTTCTTCATGTGTTAATAATATTTAAAAAAAATATACAAATTGTTTAAAAAATGTGTCATGTGATAACAATATTGGATGTATTTTAAGTACGTTAAAAGGACGTGGCTAACTGTTTTA
Unaligned ( gi|28 ): TAAGTATGTAGATATTGACATGTGCATGACAATACAATAACATGCAAAATGATATGTGGAGCACTAAGGCCTAACAGGCATATAATAATTCGCTACCAAAAAACAAAAATGTCATTCCAT
Unaligned ( gi|29 ): TAAGGTGACAGGTACACATGTAACATGACATATATTTGGAACACACACACGATGGAACCATAACAGATACTATCTTAGACAAGCATCATTAAATCATTCATTATGGTTAGACACTAAA
Unaligned ( gi|33 ): ACCTTCCAGATATTTGAGTAATAGTCCGTTATCTTGGTCTTAACGATATCTATGTGTATAACAGATTTGTTTTCAAAAAAGTTTATCAGATT
Unaligned ( gi|36 ): GTCACTTCCAATAAATAGAAGTAATATGAAATTCATATGATAATAATCAACATAATAGACTATTGTAGGTACACATTTGCAT
Alignments
lowQualScore : 111 111 111111 111 11 11111 11111111111 1111 1111111 1 222 1 22 1 111111 1111 1111 11111 2222 11 3333 22 222 111 2222222222222 1 1 11111 11 222222 333333333333 1 1 222 222 1 11
lowQualScore : 111 0 000 2 1 44 333 3 1 88888888888 22 1 999999 1 555555 1 777 666666 22 44444 22 1 1 555555 44 444 5555 888888 000 3 33 3 22222 55555 3 1 33333333333 55 4 1 4 1 1111 2 4 0 5 1 0 0 0 1 3 888 1 888 66 0 888 777 66 1 66 4 0 0 55 5 0 5 6666666 4 1 1 7 0 1 1 77 0 2 0 5 1 88 4 55 0 22 0 22 1 222 8 5 5 7777 1 1 1 1 333 1 3 1 33 1 4 1 1 1 666666 5 4 0 5 0000 1 66 7777 11111 5 6666 5 6 1 55 6666 1 44 55 2 111 888 2222222222222 2 5 1 11111 6 99 3 6 22 6 1 2 6 3 333333 1 1 3 1 1 0 444444444444 1 1 0 1 1 1 1 4 1 1 0 0 0 1 555 1 000 5 88 22
lowQualScore : ... . ... . . .. ... . . ........... .. . ...... . ...... . ... ...... .. ..... .. . . ...... .. ... .... ...... ... . .. . ..... ..... . . ........... .. . . . . .... . . . . . . . . . . ... . ... .. . ... ... .. . .. . . . .. . . . ....... . . . . . . . .. . . . . . .. . .. . .. . .. . ... . . . .... . . . . ... . . . .. . . . . . ...... . . . . .... . .. .... ..... . .... . . . .. .... . .. .. . ... ... ............. . . . ..... . .. . . .. . . . . . ...... . . . . . . ............ . . . . . . . . . . . . . . ... . ... . .. ..
lowQualScore : 888 8 000 0 5 55 777 8 0 77777777777 55 8 333333 8 000000 7 888 222222 44 33333 11 7 0 555555 22 777 7777 888888 222 6 99 6 77777 55555 2 9 44444444444 55 4 0 4 9 2222 3 4 2 7 3 2 4 1 4 2 888 0 888 99 2 888 888 11 9 11 4 8 1 44 0 2 0 2222222 2 0 4 9 3 6 0 99 7 7 8 0 0 66 2 22 1 00 2 00 1 999 9 7 7 1111 0 4 0 0 888 0 7 4 66 4 3 3 0 0 444444 7 3 1 1 6666 0 99 5555 66666 0 2222 0 2 4 88 1111 0 44 88 2 555 000 2222222222222 8 0 0 44444 7 22 2 7 77 7 0 5 7 8 000000 0 4 2 4 4 8 888888888888 4 0 6 0 0 0 0 2 0 2 0 0 2 0 000 0 555 5 55 00
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCAAATA--TAGATAAGATAAG---ATATTGTTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TANGT----------TATACA--T-A------TATA-CAATT---G--ACA-AAAT--TAT--A--TGG--CA-----CCCGGCCCA-TT-GGGCCTATANGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--NAATTCGTAAATAC-TGCTATTATAT-A-----CA--T--AGGTTAACTATGACGTACA-------A---AAT--CCTGACAAAATATTAGTAAAA-TATTCCCTGNGTATCCAAT-ATTGTCAGTATGGAGTGTAGTTATGATAGA--TATGTTATAAATACA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGAGGTATTAAGTCTGACATAATAGTTTACGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGACAAGAAACTTTGCAAGTTGTCTTGGA---TGCGCTGATATGATATGTGNA---AGTCG--CTGGTTTATAT---GCATGTAA---GC--ATTA--TTTACAAA-TAAATCTCTGAAATN-GTTTTCTCGCAG-GTCATTATACAGTTCACACTGAAATAGAAAGTGT-T-------TCTCATCTTCNA-CTGAATTTGACTGACAAAGTCTACAAAGTCTCTGATCNGG--TTGCTCCCCGACATACCTTCCGGTTTCAATTC-TNAGT-GGTAAGATACCACNTCTAAATTGGNNCAACANNGAGCGTTCATG--TCTTGT-TTA-AGTTTATCANAACGTANTNCTCGCGTTCAAANTTTTCCTTAAACAGT-GCGATANGTCCTCAGTTTNGACATNCTT------TGA-ACGTCTTCTGACC----AGACATTNGAGTA--ATA----GT---T-TA-CTAG----TA-ATCCATGTG-CTT-TGATGTGTCAATAAC-TGTTCTGTTTTCAAAGTAGTTT-GTCGGAT---AACCCCAGCATAGACATAACGTGTTTTAANATCACGTG-ACCAATTATTTTTGCA-C--TTTAAATAGTCG-GAATTAAACAC-TTTTTTTGT-AATCCGTCTGTCATCCATCAAAATCACTCTGTTCCACATA-CGCAACATGTTTCCCCATCGTCTGTAAACACTTGGTATCCACCCGGTATCCCCAATCATCGCGAGAATTGGCGT------GAANCGATGAACGCCAAGAAAGTATCGTATAGCTCGATTCTGAACGTTGTC---TGTA-TGT-TGATACTGTTTGAATCCCCATACTGANGAACAATAGTCNAGGATNGGCACAANACACGANTCGNATA-GT-TTTTCGNAG--TTTAATNTCTTTTCCAAGAGTATAAGTNNTTTAT
Reference ( family-717 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCAAATA--TAGATAAGATAAG---ATATTGTTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TANGT----------TATACA--T-A------TATA-CAATT---G--ACA-AAAT--TAT--A--TGG--CA-----CCCGGCCCA-TT-GGGCCTATANGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--NAATTCGTAAATAC-TGCTATTATAT-A-----CA--T--AGGTTAACTATGACGTACA-------A---AAT--CCTGACAAAATATTAGTAAAA-TATTCCCTGNGTATCCAAT-ATTGTCAGTATGGAGTGTAGTTATGATAGA--TATGTTATAAATACA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGAGGTATTAAGTCTGACATAATAGTTTACGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGACAAGAAACTTTGCAAGTTGTCTTGGA---TGCGCTGATATGATATGTGNA---AGTCG--CTGGTTTATAT---GCATGTAA---GC--ATTA--TTTACAAA-TAAATCTCTGAAATN-GTTTTCTCGCAG-GTCATTATACAGTTCACACTGAAATAGAAAGTGT-T-------TCTCATCTTCNA-CTGAATTTGACTGACAAAGTCTACAAAGTCTCTGATCNGG--TTGCTCCCCGACATACCTTCCGGTTTCAATTC-TNAGT-GGTAAGATACCACNTCTAAATTGGNNCAACANNGAGCGTTCATG--TCTTGT-TTA-AGTTTATCANAACGTANTNCTCGCGTTCAAANTTTTCCTTAAACAG--GCGATATGTCCTCAGTTTNGACATNCTT------TGA-ACGTCTTCTGACC----AGACATTNGAGTA--ATA----GT---T-TA-CTAG----TA-ATCCATGTG-CTT-TGATGNGT-AATAAC-TGTTCTGTTTTCAAAGTAGTTT-G-CGGAT---AACCCCAGCATAGACATAACGTG-TTTAANATCACGTG-ACCAATTATTTTTGCA-C--TTTAAATAGTCG-GAATTAAACAC-TTTTTTTGT-AATCCGTCTGTCATCCATCAAAATCACTCTGTTCCACATA-CGCAACATGTTTCCCCATCGTCTGTAAACACTTGGTATCCACCCGGTATCCCCAATCATCGCGAGAATTGGCGT------GAANCGATGAACGCCAAGAAAGTATCGTATAGCTCGATTCTGAACGTTGTC---TGTA-TGT-TGATACTGTTTGAATCCCCATACTGANGAACAATAGTCNAGGATNGGCACAANACACGANTCGNATA-GT-TTTTCGNAG--TTTAATNTCTTTTCCAAGAGTATAAGTNNTTTAT
gi|1 : TCCAAATA--TAGATAAGATTAG---ATATTGTTTATTATT-GTGACATGTGCAT--ACTT-TCTT-CAAGT----------TATACA--T-A------GATA-CAATT---G--ACA-CAAT--TAT--T--TGG--CA-----CCAGACCCT-TT-GGGCCTATATGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--AAATTCGTAAATAC-T-TTATTATAT-A-----CA--T--TGGTTAACTATGACGTACA-------A---CAT--CCTGACAAAATATTGGTAAAA-TGTTCCCTGAGTATCCAAT-ATTGTCAGTATGGAGTGTAGTTATGATAAG--TTTGTTATAAATATA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGAGGTATTAAGTATGACATAATAGTTTACGAAAACAAGATATTTCTTCTTTTTAAGGAAGCACAGACAAGAAACTTTGCAAGTTGTCTTGGA---TGCGCTGATATGATAGGTGGA---AGTCG--CTGGTTTATAT---GAATGTAA---GC--ATTA--TTTACAAA-TAATTCTCTGAAATA-GTTTTCTCGCAG-GTTATTATACAG-------TGAAATAGAAAGTGT-T-------TTTCATCTTCTA-CTAAATTTGACTGACAAAGTCTACAAAGTCTCTGATCAGG--TTGCTCCCCAACATACCTTCCGGTTTCAATTC-TGAGT-GGTAAGATACCAGTTCTGAATTGACACAATACAGAGCGTTCA----TTTTGT-TTA-AGTTTATCATAACATAGTCCTCACATTTAAATTTTTCCTTAAACAG--GCGATATATTCTCAGTTTTGATATACTT------TGA-ACGTCTTCTGACC----AGACATTAGAATA--ATA----GT---T-TA-CTAG----TA-ATCCATGTG-CTTGTGATAAGTCAATGAT-TGTTCTGTTTTC---GTAATTT-G-CAGAT---AACCCCAGCATACACATAACGTG-TTTAATATCATGTG-ACTAATTATTTTTGTA-T--TTTAAAAAGTCG-AAAGTAAACACTTTTTTTTGT-AATCCGCCTGTCATCCATCAAAATCACTTTGTTCCACATA-CGCAACATGTTTCCCCATCGTCTGTAAACACTTGGTATCCACCCGATGTCCCCAATCATCGCAAGAATTGGCGT------GAAGAGATGAACACCAATACAGTATCTTATGGCTCTTTTCTGAACATTATC---TTTA-TGT-TGATACTTCTTGAATCTCCACACTGAGGAGCAATAGTCAAGGATAGGCACAACACATGATGTGTACA-GT-TTTTCGTAGGATTTGAACTCTTT---AAGAGTAT--GTATTTTAT
gi|10 : tgattatgtctattgattatgtcattaacaagcgatcttgctttctgcctaaatggtcatccgtgTACACATCACATG-CATAATGTCAAAAG-TCCAGTTATTTGTACAGCGGTT---ATAATCATGCAT-AAATAC-TTTCTTTGTCAGTCTAT-TATTATCCATGATAATAAGTCCATTCCAAAAC-CGTAACATCCATGTCCATCGTCTGTACACGCTTGGTATCCAGCCAGTATCACC------CACGAGAGCTGATGTCGGCCCAAACCTACGTACGCCAAGGAAATAACGCATAGCTCGATTTTGGACGTTGTCAATCGT----T-TGAAACTGTCTATATCCCCATACTGATGCACAGTAGTCTAGGATCGGCACAACACACGAATTGTAAA-GT-TTTTCAAActataattccaccaagtgcacggcctgctgctttcccgagcgattcactagtgtacattaagtggttcttttcatggaaaataacccctagatatttgtata
gi|11 : cgagttTA--TAGATGAGATAAG---ATATTGTTTATCATT-GTGACATGTGCAT--ACAT-TCAT-TAAGT----------TATACA--T-A------TATA-CAATT---G--ACA-AAAT--CAT--T--TGG--CA-----CCCGGCCAT-TT-CGGCCTATATGTCACC----A-GGATAAT----GAAAG---TAAT----TATAT------ACA--CAATTCGTAAATAC-T-CTATTATAT-A-----CA--T--AGGTTAACTATGATGTACA-------A---AAT--CCTGACAAAATATTGGTAAAA-TATTCCCTGAGTATCCAAT-ATTGTCAGTATGGAGTGTAGTTATGATAGA--TATGTTATAAATATATATAcgaacggaggatgtatttctttgttacttcttt
gi|12 : tgtaaaagtGATAAGATACG---ATATTGTTTATTATT-GTGACATGTGCAT--ACAT-TAAT-TATGT----------CGTACA--T-A------TATA-CAATT---G--ACA-AAGT--TAT--T--TGA--CA-----CCCTGCCCA-TT-GGTCCAGTTTGTCATC----A-GGTTAAA-CAAGAAAG---TATT----TATAT------ACA--CAGTTCACAAGTAC-TGCTATTGTAT-A-----CA--T--AGGCTAACTATGAAGCATA-------A---AAT--GCTGACAAAATATTAGTAAAA-TATTCCCTGTGTGTATAATAATTTT---TAT--AGT-TCG-TGTGAGCGAT-TATGTTATAAATACA-CTA--AAATGCAGGCAGTAGATCAAACCTTATCAATACATGAAGTATTAAATCTGACATAATAATGTGCGAAAACAtatccaatcatggttccaatatttaacatattaaactaatttgataaaaatatgataatt
gi|13 : GTTTCTACTC-TTAA--ACTAGAATACCACCTCTAAACTGGGTCAACAACAAACGTTCATGTTTCTTCTCTTAGAGGT----AGAATACATTGTTCAAGTTCAAAA-----AGTGAAAAGTTAC-ATAAATCCGCAATTTAGACACTCAT------TTA-----CTTCTG-CCTTCAAGTTGTTTGAGTAGCATATC--GT---TATC-TTAG----TATAGTGATGT--CT----ATGTGT--ATAACATATT-TGTTTTCAAAATAGTTTAA-CAGATTGAAAT-------TGGACGTGAC-TGTTTTCAAATCAC-TGCACCAATTATTTT
gi|14 : ctATAAG-TAAGT--AAATAGTTTATAATA-GTGGCATGTGCAT--GG----CAG-TACA------------ATA-A--T-A------TATG-CA-TT---G---CA-AAAT--GAT--AAATAG--TAGATGACCCGGCCCA-GT-GGGCCTACAAGTCAC
gi|14 : CA-ATAG--TAG--A--TG----A-----CCCGGCCCA-GT-GGGCCTATAAGTCACT----GCGAATAA------ATAG---AAGT----CATAT------GCA--tgccaataaatagaagtggtatgcaatagtagatgacccggcccagtgggcctataagtcactgcgaataaatagaagtcatatgcaatttcatttgataataagcaatgggacataaataggataatgtaggtaaactttcaaaggcacaaatgtaggtaaa
gi|15 : ataagtaagtaaatagtttataatagtggcatgtgcatggcagtacaataatatatgcattgcaaaatgataaatagtagatgacccggcccagtgggcctacaagtcactgccaataaatagaagtggtatgTTATTAAA-GTGACATGTG--T--ACAT-GTAA-CATG--------------ACA--T-A------TATA-TAATTTTAA--ACA-ACA----------------CA-----CCCGGCCCA-AT-GGACCTATAAGTCACC-------TATA---CAAATAAA---CAAT----TATATTATTTCACATGAAATT-----ATGCTTGTTATTAAAC-AC----CA--TAAAAATGAATAAT-ATGTACA-------AGGTAATTACATAACAACATATTAATatttcatttgataataagcaatgggacataaataggataatgtaggtaaactttcaaaggcacaaatgtaggtaaa
gi|16 : aTTTTTTCTTTTTAAGAAAGCACAGACAAGATACTTTGCAAGATGTCTTGGA---TGCGCTGATATGATATGTGCA---AGTCG--TTGATTTATAT---GCTTGTAA---GC--ATTA--TTTACAAA--AAATCTCTGAAATT-GTTTTCTCGCAG-GTCATTATACAGTTCACACTGAAATAGAAAGTGT-T-------TTTCATCTACTA-CTGAATTTGACTGACAAAGTCTACAAAGTCTCTGATCAAG--TTGCTCCCCAACATACCTTCCGGTTTCAATTtacgattgtttgaaaagtcattggttatataatgtatttcttcttctcatgtaagccttaacaatatatttagctacttttct
gi|17 : TAA---AC--AT-A--TCAGCAAAGTA--TCT-TGAAACACATTTTCTCTGAT-ATTATTGTAAAGTCCACAATGTAACAGAAAATGT-T-------TCTCGTCTTCAA-CGGATCCTGTGTCACAGAATCTTCATAGTCTCTGTTCTGGAGTT--TCACCAATATACCTTCCAGTCTCTATTCTTAAATAGGTAAAATGCCACACCTAAATTGACACATAATAGATCTCTCGT---TTTTCT-TTA-AATTGGTTACACCATACT
gi|18 : TAGT-GGGACATCTG--T--ACAT-GTAT-CATGA----------CATACA--T-A------TACAGTATTT---GTAACA-ACA----------------CG-----CCGGGCCGA-GT-GGAGCTATAAGTCACCTATAA-AGATAA------ATAG---TTAT----TAT-T------ACAT-TAAT--GTAATTA-----TATTATTTGA-----CA--T--Ag
gi|19 : aagtaagtaagtagtaagtaagtgagtcagta-GTGACATGTGCATCGACATATCAA-TAAA------------ACTCA----A------TAAA-CAATA---A--AAG-AGAC--TGA--A----G--CG-----TCCGGCCAA-AT-GAACCTATAAGTCACT----ATGGACAATACAAAAtaagcatgtttgcaattaaacatcatcaaacaatccaattgaatggttgcatgcatgttttaaaa
gi|2 : caaaTTCAAACA--T---TAAGATAAG---ATATTGTTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TAAGC----------TATACA--T-A------TATA-CAACT---G--ACA-CACT--TAT--T--TGG--CA-----CCCGGTTCA-TT-GGGCCTATATGTCAAT----A-GGATAAT-ATAGAAAG---TAAT----TATAT------ACA--AAATTCGTATATAC-TG-TATAATAT-A-----CA------GGTTAACTATGACATACA-------C---AGT--CCTGACAAAATATAAGCAAAA-TATTCCCGGAGTATCCAAT-ATTGTCAGTATTGAGTCTAGTTATGATAGA--TATGATATAAATACA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGAGGTATTAAGTCTGACATAATAGTTGGCGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGATAAGAAACTTTGCAAGTTGTCTTGAA---TCCGCTGACATGATATGTGGA---AGTCG--CTGGTTTATAT---ACATGTAA---GC--ATTA--TCTACAAA-TAAATCTCTGAAATT-GTTTTCTCGCAG-GTCATTATACAGTTTACACTGAAATAGAAAGTGT-T-------TCTCATTTTCTA-CTGAGTTTAACTGACAAAGTCTACAAAGTCTCTAATTAGG--TTGTTCCCATATAAATCTTCCGGTTTCAATTC-TCAGT-GGTAAGATACCAGTTC-----TGACAAAATACAGAGCATGCAT---TCTTAT-TTA-AGTTCATCATAACGTAGTCCTCGCATTTGATGTGTTTCTTAAACAG--GCGATATGTTCTCTGATTTGATATACTT------TGA-ACGTCTTCTGACC----AGACATTAGAATT--ATA----AT---T-CA-CTAG----TA-ATCCATGTG-CTTATGATGAGTCAATTAT-TGTTCTGTTTTC---GTAATTT-G-CGGAT---TACCCCAGCGCAGACATTACGGG-TTTAAAATCATGTG-ACCAATTATTTTTGCA-C--ATTAAATAATCG-AAATTAAACAC-CTTTTTCGT-AATCAGTCTGTCATCCATCAAAACCACTTTGTGACCCATA-TGCAACATGTTTCCCCATCGTCTGCAAACACTTGGTATCCACCCGGTATCCCCAATCATCTCGAAAATTGGCGT------GAAACGATGAAcatcatatttaaaacatgacatcatcggttttgacgatattaaattctatttaatatacaaaaatgttatgctatatgtaaacgtgtcttttaacaaataatactgataactttaattatactgtt
gi|20 : caattatacattctattttttatgtacgtcacatattcttatttgttaaaattattatTTATTATA-GTGACATGTGCA---A-AT-GCAT-AACAT----------TATATA--T-AAA----TATG-CAATT---A--ACACAGA----AC--A-------CA-----CCCGGCCCA-AT-GGACCTTTAAGTCACC----ta
gi|21 : GATAAGATCAA---TTATTGTTTATTATT-GTGACATGTGCAC--ACAT-TCAT-CATGTTATATATATATATATA--T-A------TATA-CAATT---G--ACA-AAAG--TTT--A--TGG--CA---------------------CTTATATGTCGCC----A-AGATAAT-CAAGAAAGTTATAAT----TAT---------------ATTC-TAA------GGTATTATTT-A-----CAGTT--A--TTAACTtatatgaatgtacatacacatataccctaatgtactatatattaagcatgcttgaaataatacatgtttgattacaattcgatataacagtttgtgcatttcgtctgtttgaaactggtt
gi|22 : AGATATGATAAG---ATATTGTTTATCATT-GTGACATATGCAT--ACAT-TCAT-TATTT----------TATGCG--T-ATATTATTATA-CAGTT---G--ACA-AAAT--TAT--A--TGG--TA-----ACTGGCCCATTT-GGGTTTATATGTCACC----A-GGGTCAT-CAAGAAAC---TAAG----TA
gi|23 : TATTGTTTATCATT-GTAACAT-------------TCAC-TATGT----------TAAACA--T-AATTA--TATA-CAATT---G--ACA-AAAT--TAT--A--TGG--CA-----TCCGA-CCA-TT-GGGCCTTTATGCCACC----A-GCATATG-TAAAAGGA---CATT----TATAT------
gi|24 : GCCAAGAAAGTATCATAAAGCACGATGTTGAATGTTG-----TGTATTGTCTGACGCTGTATGAAACCTTATACGGCAGAACAACGGTCTAATATTGGAATGAGGCCTGAATGAAATATAT-TATTTGAA---TCCAATGTCTTTgaatatcccctttcaatattg
gi|25 : t---ATATT--TTATTAAT-GTGACATGTGCATG-ATAT-ACAT-GACAA----------TA-ACA--C-G-------ATA-CAAAT---A--AGA-AAATAATAA--A--TAT--CA-----CCTGGTCCA-CT-GCGCTTTTCGGTCAT---------ATAAT-TATGGAA----TAGT----T
gi|3 : gtaagtaaatacTT-GTGACATGTGCGT--ACAT-TTAT-TAAGT----------TATACA--T-A------TACA-CAATT---G--ACA-AAAT--TAT--T--TGG--CA-----CCCGGCACA-TT-GGGCCTATATGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--AAATTCGTAAATAC-T-CTATTATAT-A-----CA--T--AGGTTAACTATGACGTACA-------A---AAT--CCTGACAAAATATTAGTAAAA-TATTCCCTGTGTATCCAAT-ATTGTCAGCATGGAGTATAGT-ATGATAGA--TATGTTATACATATA-ATAGGAAA-ACAGGCAATATATCATAAATCAATACTACATGAGGTATTA-------------------CGAAAACAAGGTATTTCTTCTTTTTAAGAAAACACAGACAAGAAACTTTGCAAGTTGTCTTAGA---TGCGCTGATATGATATGTGCT---AGTCG--TTGGTTTACAT---GTATGTAA---AC--ATTA--TTTACAAA-TAAATCTCTGGAATT-GTTTTCTCGCAG-GTCATTACACAGTTAACACTGAAATAGAAAGTGT-T-------T-TCATCTTCTA-CTGAATTTGACTGACAAAGTCTACAAAGTCACTGATCAGG--TTGCTCCCCAACATACCTTCCGGTTTCAATTC-TGAGT-GGCAAGATACTAGTTCTAAATTGACACAAAACAGAGCGTCCAT---TCTTGT-TTA-AGTTCATCATAATGTAATCCTCACATTTAAAATTTTCCTTAAACAG--GCGATGCGTTCTCAGTTTTGATATACTT------TGA-ACGTCTTCTGACC----AGACATTAGAATA--ATA----GT---T-TA-CTAG----TA-ATCCATGTG-CTT-----GT-T-AATAAT-TGTTCTGTTTTC---GTGATTT-G-CGGAT---AACCCCAGCATAGACATAACATG-TTTAATATCATGTG-ACCAATTATTTTTGCA-C--TTTAAATAGTCG-GAATTAAACAC-TTTTTTTGT-AATCCATCTGTACTCAATCAAAATCACTCTATTTGACATA-CGCAACATGTTTCCCCATCGTCTGTAAACACTTGGTATCCACCCGGTGTCCCCAACCATCGCGAGAATTGGCGT------GAAGCGATGAACACCAAGAAAGTATCTCATGGCTCTATTCTGAACATTATC---TATA-TGT-TGATACTTCTTGATACACCACACTGAGGAGGAATAGTCGAGGATGGGCACAATACA
gi|30 : ATGT----------TATACA--TTA------TGTA-CAATT---T--ACA-AAAT--TGT--A--TGG--CA-----CCCAGCCCA-TT-GGGCCTCTATGTCACC----
gi|31 : acaacaatacttacaacattgtgtttataaatggtaaaaaatgctttgCATCAACAATATATCAGGTATTAAGTCTGATATAATAGTTAACGAAAACAAGACATTTCTTCTTTTTAAGAAAGCAGAGACAAGAAAC
gi|32 : GTACA-------A---AAT--CCTGATAAAATATTAGTAAAA-TATTCACTGTGTATTTAAT-ATTGTCAGTATGGACGGTAATTTTGTTAAG--AATGTTATAAATACA-ATAGAAgtgtttaattgtt
gi|33 : CC----AGATATTTGAGTA--ATA----GTCCGT-TATCTTGGTCTTA-A-CGATAT--CT----ATGTGT--ATAAC-AGATTTGTTTTCAAAAAAGTTT-ATCAGAT---
gi|34 : accttTTGTGTATTAAA-GTGACATGTG--T--GCA----AC-AAAAT----------TATA-G--T-A------ATTA-C-ATT-------CA-AATT--TATCAA--TGGCACA-----CCCGACCAG-AT-GGACCTAt
gi|35 : TGTGCAT--ACA----ATGTATAT----------TACAAA--T-AGTTA--TATA-CAA--------AAA-AAA----AA--A--AG------------CGGCCCA-TT-GGACCTATAAGTCACC----aatc
gi|37 : TTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TAAGT----------TATACAATT-G------TAT--TTATT---G----A-AAAT--CAT--taaactattaggtat
gi|38 : G--CA-----CCCGGCCCA-TT-GGACCTATAAGTCACC----t
gi|39 : aaaaaacaaTC-TTAGA-GGTAGAATACCACATCTAAATTGGGCCAACAATGAACGTtaaactgttaggtataaactg
gi|4 : GTTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TAAGT----------TATACA--T-A------TATA-CAATT---A--ACA-AAAT--TAT--T--TGG--CA-----CCCGGCCCA-TT-GGGCCTATATGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--AAATTCGTAAATAC-T-CTATTATAT-A-----CA--T--AAGTTAAATATGACGTACA-------A---AAT--CCTGACAAAATATTAGTAAAA-TATTCACTGAGTATCCAGT-ATTGTCAGTATGGAGTGTA----------------GTTATAAATATA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGATGTATTAAGTTTGACATAATATTTTACGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGAGAAGAAACTTTGCAAGTTGTCTTGGA---TGCGCTGATATGATATATGCA---AGTCG--TTAGTTTATAT---GCTTGTAA---GC--ATTA--TTTACAAA-TAAATCTCTGAAATT-GTTTTCTTGCAG-GTCATTATACAGTTCACACTGA
gi|4 : TCCTTAAAAAG--GCGATATGTTCTCAGTTTTAATATTCTT------TGA-ACGTCTTCTGACC----AGACATTAGAATA--ATA----GT---T-TA-CTAG----TA-ATCCATGTG-CTTGTGATAAGTCAATAAT-TGTTCTGTTTTC---GTAATTT-G-CGGAT---AACCCTAGCATAGACATAACGTG-TTTAATATCATGTG-ACCAATTATTTTTGCA-C--ATTAAATAGTCG-GAATTTAACAC--TTTTTTGT-AATCCGTCTGTCATCCATCAAAATCACTCTGTTCCACATA-CGCAACATGTTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccttaaaaaggcgatatgttctcagttttaatattctttgaacgtcttctgaccagacattagaataatagtttactagtaatccatgtgcttgtgataagtcaataattgttctgttttcgtaatttgcggataaccctagcatagacataacgtgtttaatatcatgtgaccaattatttttgcacattaaatagtcggaatttaacacttttttgtaatccgtctgtcatccatcaaaatcactctgttccacatacgcaacatgttt
gi|5 : gtttattattgtgacatgtgcatacattcattaagttatacatatatacaattaacaaaattatttggcacccggcccattgggcctatatgtcaccaggataatcaagaaagtaattatatacaaaattcgtaaatactctattatatacataagttaaatatgacgtacaaaatcctgacaaaatattagtaaaatattcactgagtatccagtattgtcagtatggagtgtagttataaatataataggaaaacaggcaatatatcatacatcaacaatacatgatgtattaagtttgacataatattttacgaaaacaagatatttcttctttttaagaaagcacagagaagaaactttgcaagttgtcttggatgcgctgatatgatatatgcaagtcgttagtttatatgcttgtaagcattatttacaaataaatctctgaaattgttttcttgcaggtcattatacagttcacactgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATGGAAAGTGTGTGACAAGATTTCATCTTCAATCTGAAGTAGATT-ACAAAGTGTG---AGTCTTTGCTCTCG--TTGCTCACCGACATATCGTCGCGTTTCAACTC-TTTGA-GGTAGAATACCACATCTAAATTGGGTCAACAATGAACGTTCCTG--T-TTGT-TAA-ATTTTAAAACCATATATTGTTCAAGTTCAAATTTATTTTTAAA-AGTAAC-ATAAGTCTGCAATTTAGGCATC--T------TGCTACTTCTACCTTCC----AGATATTTGAGTA--GTATTTCGT---TATC-TTAGTCT-TA-A-CAATGT--CT----ATGTGT--ATAAC-AGTTTTGTTTTCAAAATAGTTC-ATCAGATTTAAAT-------TGGACAAAAC-TGTTTTCAGATCAT-TGTACCAATTATGTTTACA-C--TTGTTATAGTTC-ATGTTAAAGAC-ACGCCTGGT-TAGCCTATTGTCATCAAACAATACAAGTCTGTTCCA-GTATCGTATCATTGCTACCCAACGGCGATAACAACTAGGAAGCCATCCCGCACATGCGGTGATTGCAAGTTTCGGGGC------AAATCTGTGTACGCCAAGAAAGTACCGTAAAGCACGATTCTGTACATTGTC------------TGGTAATGTTTGAATCCCCATACTGATGCACAGTAGTCCAATATTGGTACAAAACACGATTCAAATA-GTCTTTTGGTAG--TTTAATATCTTTTCCAAG-GTATAAGTCATTTAT
gi|6 : ttattatagtgatatgtgtacAGATAAG---ATACTGTTTATTATT-GTGACATGCG-----ACAT-TCAT-TATGT----------TGTACA--T-A------TATA-CAACT---G--ATA-AA----TAT--A--TGG--CA-----CCCAGCCCA-TT-GGGCTAATATGCCACC----A-GATTAAT-CAAGAAAG---TAAT----TATAT------AGA--TGATTCGTGAATAC-TGCTATGATAT-A-----CA--T--ATGTTAACTTTTAAGTACATGTACGTA---AAT--GCTGACAAAATATTAGCAAAA-TATT-TCTGTGTATTTAAT-ATTGGTAGTATGGACGATAGTTATTGTA-ATTTTTTTTATAAATATA-ATAAGAAT-ATTGACAATAGATCATACATCAACAAAACATGAACTATAAAGTCTGACGTAATAGTTTACAAAAACATCACATTTCTCCTTTTTATGAAAGCACAGACAAACAA------AGGTTTTCTCGGA---TGCGCTGATATGATATGTGAA---AGTCG--GT-GTTTATAT---GCATGTTA---GCAAATTAATCTTA-AAA-T--ATCTAT---ATA-GTTt
gi|7 : tATA---AGAGAAGAGAA----ATATTGTTTAT-ATTCGT--TATGT-TAT--ACAT-ACA----AAT----------TAT-CA--T-A------CATA---ATT---G--ACA-AAAT--TAT--A--TGG--CA-----CCCGGACCA-TTTGAATTTATATGCCACC----A-GGTTATT-CAAGAGAG---TAATAAACTATAT------ATA--CCATTCGTAAATAC-TGTTAGTATAT-AGTTAACT--T--AT-TTAACTATGAAGTTCA-------A---ACT--CCTGACTAAGTATTTGCAAAAATATTCCCTGTGTATTTGAC-ATTGTTTGTATGAACGGTAATTATGGTAAA--TTTGTTATAAATACA-ATAAGACT-ACTTGCAATAGTTCATACATCAACAATACA----GTAT-------GACATAATAGTTGACGAAGACAAGATATTACATCTTTTTAAGAAAGCACAGACAAGACATTTTGCAAGTTTTCTTGGA---TGCGCCGATATAATCTGTGAG---ACTC---CTGGTTTATATGTAGCATGTTA---GC--AATA--TCTACAAA-TAAATCTCTGAAATA-GTTTTCTCGCAG-GCCATTATACAGTTCACACTGAAATAGGAAGCGC-T-------TCGTATCTTCggcaaacgccattttctgtttcgttgactgcaattagtatttgccttactaagttctatatctgaccctgaaaagtgcaca
gi|8 : TACTTCTTCTTCTCATGTAAGCATATACAATATATTTAGCTACTTTTCTGGGAACGTGTG-TGACAAGAAATACACATTTAGCCATACTA-TCCATAC----CAT-TAAACTGC--AT-A--TTTGAAAA-TTGTTCATTCAAAAT-GTCTGCT-GTAATATCATTGTAAAATGTACATTAGATCAAAAAATGA-T-------TTTCATCTTCAATCTGAAGTAGATT-ACAAATTGTGCAGAGTCTTTGCTCTCG--CGGCTCACCGACATATCGTCCCGTTTCTATTC-TTAGT-GGTAA--------------ATTGGGCCAACAATGAACGTTCCTG--T-TTGC-TCA-AATTTAAAAGCACATATTGTTCGAATTCAAATTTATCTTTAAA-AGTTAC-ATAAGTCCGTAATTTAGGCACTCTTACTACATAA-AC--CTTC----C----AGATATTTGAGTA--GTA----TT---C-CG-TTAGCT--TA-GTCTAAACAATTT-TTATGTGT-A-TAAC-AGTTTTGTTTTCAAAATAGTTT-ATCAGAT------TCGAAT-TGGACATAAC-TGTTTTCAGATCACTAC-ACCAATTACTTTttgtactcaaatatcagacaa
gi|9 : AAATAAGTAAGTAAG-TAAGTAAATATT--TTATTAAA-GTGACATGTGCAT--ACA----ATATATGT----------TACAAA--T-AGTTG--TATA-CAA--------ACA-AAA----AC--A---AG--CA-----CCCGGCCCA-TT-GGACCTATAAGTCACC----
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): ATTTGTAAGTAAGTATGTAAGTAAGTTTTTATTATAAAAACGTGTGTAAATTTATAACATAATATGTTAATATGCAGTTTTTACAGAACACAATCGGCCCAATGGACCTAGTCACATATATAAATAT
Unaligned ( gi|27 ): AATACTTCTTCATGTGTTAATAATATTTAAAAAAAATATACAAATTGTTTAAAAAATGTGTCATGTGATAACAATATTGGATGTATTTTAAGTACGTTAAAAGGACGTGGCTAACTGTTTTA
Unaligned ( gi|28 ): TAAGTATGTAGATATTGACATGTGCATGACAATACAATAACATGCAAAATGATATGTGGAGCACTAAGGCCTAACAGGCATATAATAATTCGCTACCAAAAAACAAAAATGTCATTCCAT
Unaligned ( gi|29 ): TAAGGTGACAGGTACACATGTAACATGACATATATTTGGAACACACACACGATGGAACCATAACAGATACTATCTTAGACAAGCATCATTAAATCATTCATTATGGTTAGACACTAAA
Unaligned ( gi|36 ): GTCACTTCCAATAAATAGAAGTAATATGAAATTCATATGATAATAATCAACATAATAGACTATTGTAGGTACACATTTGCAT