lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     1111111111111111111111111111         
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                         1111          1                                 3333333             33333333333                               11     11                                                                     22             11111                     11111                                                                            2222                                                                   1                                                                                              1                   1111111    2222   1111                           11           11                      7777777777777777777777777777777777777777                1111111          111111                                                                                              222222                       222222                                                 11         1111                 1   222222                                1111          222                 1111111111111              222        1     2222           1       1                                  3333333333333333333               1               111                                                                          1    1111       1111                 333333333333           222               22              5555555                                       1     1              2222222   2        2222222222222222222222222222         
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                  6      7777      66  2                 2               1111111 5         2 44444444444   33  2 0     9 2    66       55 2   33    3                 0            777    8888        6              11         66  77777           3     888 99999 5               5      5 6       7         5     0       66     5   0  66  3333    5         5   1    6          3                      1      1  1             5                             7                1                                 3   8    5  0 3     8888888    5555   0000   888  66  3 66        5  55  5 1      55            5  2      9999999999999999999999999999999999999999 5  5         5 8888888  1       444444  99       5 7         0  1        3  55 99      2  0           1          8 8   8    55      000000       1   7 44  1     555555        1  1 44 22     6 2    2       3  4       55         9999    8      1     1   333333     5       1         1        7777   8      555   0      3  8   8888888888888  1           888        6     0000  3 3   8  0       3  6     3    6   2  6           6 7777777777777777777   55  99      3   0 99  8     222                    3       8   5            2                            0    9999  3 2  1111   0 2   1    0  222222222222   4       666    4 88  0    44     4     1  9999999        77       9   0     6 77  1     2     2       3   6  1111111   0    444 9999999999999999999999999999  77     
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                  .      ....      ..  .                 .               ....... .         . ...........   ..  . .     . .    ..       .. .   ..    .                 .            ...    ....        .              ..         ..  .....           .     ... ..... .               .      . .       .         .     .       ..     .   .  ..  ....    .         .   .    .          .                      .      .  .             .                             .                .                                 .   .    .  . .     .......    ....   ....   ...  ..  . ..        .  ..  . .      ..            .  .      ........................................ .  .         . .......  .       ......  ..       . .         .  .        .  .. ..      .  .           .          . .   .    ..      ......       .   . ..  .     ......        .  . .. ..     . .    .       .  .       ..         ....    .      .     .   ......     .       .         .        ....   .      ...   .      .  .   .............  .           ...        .     ....  . .   .  .       .  .     .    .   .  .           . ...................   ..  ..      .   . ..  .     ...                    .       .   .            .                            .    ....  . .  ....   . .   .    .  ............   .       ...    . ..  .    ..     .     .  .......        ..       .   .     . ..  .     .     .       .   .  .......   .    ... ............................  ..     
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                  0      8888      99  6                 9               7777777 4         9 11111111111   99  9 1     6 9    99       77 5   88    1                 3            000    5555        2              44         99  55555           0     888 44444 0               1      0 0       2         0     2       99     0   1  55  4444    0         0   7    7          0                      7      4  9             0                             1                9                                 7   9    7  4 0     6666666    4444   6666   888  99  2 99        0  11  0 4      11            7  2      3333333333333333333333333333333333333333 7  7         7 6666666  4       666666  66       3 9         3  8        3  00 22      5  3           0          0 2   0    22      222222       0   4 66  4     666666        4  8 66 44     5 5    5       5  0       66         0000    0      4     2   000000     0       0         4        0000   0      000   8      2  0   2222222222222  0           000        0     0000  2 2   6  8       3  7     3    7   5  0           0 0000000000000000000   44  00      6   8 44  0     444                    0       0   6            5                            0    8888  2 5  0000   2 2   2    2  888888888888   0       000    7 00  7    00     7     0  0000000        77       7   7     7 77  0     7     7       7   0  0000000   0    555 0000000000000000000000000000  00     
consensus                     :                                                                                                                                                                                                                                                                                NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCAAATA--TAGATAAG--ATAAGATATTGTTTATTATT-GTGACATGTGCATACATTCATTANGTTATACAT-A------T----ATA--CA-ATTGACAAA-ATTATNTGGCACC-CGGCCC-ATTGG-GCCTATATGTCACCAGGATAATCAAGAAAG---TAAT----TATATACANAATTCGTAAATACTGCTATTATATA--CA--TAGGTTAACTATGACGTACA---AA----A-TCCTGACAAAATATTAGTAAAA-TATTCCCTGTGTATCCAAT-ATTGTCAGTATGG--AGTGT-AGTTATGATAGATATGTT-ATAAATACA-ATAGGAAA-ACAGGCAATANATCATACATCAACAATACATGAGGTATTAAGTCTGACATAATAGTTNACGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGACAAGAAACTTTGCAAGTTGTCTTGGATGCGCTGATATGATATGTGNAAGT-CGCTGGTTTA-------TATG-C--ATG----TAA---GC--ATTA--TTTACAAA-TAAATC-TCTGAAATN-GTTTTCTCGCAG-GTCATTATA-------CAG-------T-------G------A-------A-AT-AGAAAGTGT-T-------TCTCATCTTC---NA-CT-GAATTTGACTGACAAAGTCTACAAAGTCTCTGNTCNGG--TTGCTCNCCGACATACCTTCCGGTTTCAATTC-TNAGT-GGTAAGATACCANNTCTAAATTGACACAANANAGAGCGTTCN-TGTCTTGTTTAAGTTCATNACAACGTANTNCTCGNATTCAAANTTNTCCTTAAACAGGCGATAT-G--TTCT-CAGTTTTGATATNCTT------TGAACGTCTTCTGACCAGACATTAGAATAATA----GTT-TACTAG---TAATCCATGTGCT-TGTG-ATGAGTCAATAATTGTTCTGTTTTCAAAGTAATTTGTCGGAT---AACCCCAGCGTAGACATAAC-GTGTTTAANATCA-TGTGACCAATTATTTTTGCA----CT--TTAAA----TAGTCGGAATTAAACACTTTTTTTCGT-AATCCGTCTGTCATCCATCAAAATCACTCTGTTCCA-CATACGCAACATGTTTNCCCATCGTCTGTAAACACTTGGTATCCA-CCCG---GTGTCCCCGATCATCGCGAGAATTGGCGT------GAANCNATGNACGCCAAGAAAGTANCGCATAGCTCGATTCTGNACGTTGTC---CGT-TTGATACTGTTTGAATCCCCATACTGATGCGCAGTAGTCNAGGATCGGCACAANACACGANTCGNANAGTCTTTTCGNAG--TTCGANNTCTTTTCCAGGAGNATAAGTNNTTTAT
Reference ( gi|1 )            :                                                                                                                                                                                                                                                                                TGATTATGTCTATTGATTATGTCATTAACAAGCGATCTTGCTTTCTGCCTAAATGGTCATCCGTGTCCAAATA--TAGATAAG--ATTAGATATTGTTTATTATT-GTGACATGTGCATACTTTCTTCAAGTTATACAT-A------G----ATA--CA-ATTGACACA-ATTATTTGGCACC-AGACCC-TTTGG-GCCTATATGTCACCAGGATAATCAAGAAAG---TAAT----TATATACAAAATTCGTAAATACT-TTATTATATA--CA--TTGGTTAACTATGACGTACA---AC----A-TCCTGACAAAATATTGGTAAAA-TGTTCCCTGAGTATCCAAT-ATTGTCAGTATGG--AGTGT-AGTTATGATAAGTTTGTT-ATAAATATA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGAGGTATTAAGTATGACATAATAGTTTACGAAAACAAGATATTTCTTCTTTTTAAGGAAGCACAGACAAGAAACTTTGCAAGTTGTCTTGGATGCGCTGATATGATAGGTGGAAGT-CGCTGGTTTA-------TATG-A--ATG----TAA---GC--ATTA--TTTACAAA-TAATTC-TCTGAAATA-GTTTTCTCGCAG-GTTATTATA-------CAG-------T-------G------A-------A-AT-AGAAAGTGT-T-------TTTCATCTTC---TA-CT-AAATTTGACTGACAAAGTCTACAAAGTCTCTGATCAGG--TTGCTCCCCAACATACCTTCCGGTTTCAATTC-TGAGT-GGTAAGATACCAGTTCTGAATTGACACAATACAGAGCGTTCA-T-T-TTGTTTAAGTTTATCATAACATAGTCCTCACATTTAAATTTTTCCTTAAACAGGCGATAT-A--TTCT-CAGTTTTGATATACTT------TGAACGTCTTCTGACCAGACATTAGAATAATA----GTT-TACTAG---TAATCCATGTGCT-TGTG-ATAAGTCAATGATTGTTCTGTTTTC---GTAATTTG-CAGAT---AACCCCAGCATACACATAAC-GTGTTTAATATCA-TGTGACTAATTATTTTTGTA----TT--TTAAA----AAGTCGAAAGTAAACACTTTTTTTTGT-AATCCGCCTGTCATCCATCAAAATCACTTTGTTCCA-CATACGCAACATGTTTCCCCATCGTCTGTAAACACTTGGTATCCA-CCCG---ATGTCCCCAATCATCGCAAGAATTGGCGT------GAAGAGATGAACACCAATACAGTATCTTATGGCTCTTTTCTGAACATTATC-TTTATGTTGATACTTCTTGAATCTCCACACTGAGGAGCAATAGTCAAGGATAGGCACAACACATGATGTGTACAGT-TTTTCGTAGGATTTGAACTCTTT---AAGAGTAT--GTATTTTATCTATAATTCCACCAAGTGCACGGCCTGCTGCTTTCCCGAGCGATTCACTAGTGTACATTAAGTGGTTCTTTTCATGGAAAATAACCCCTAGATATTTGTATA
gi|2                          :                                                                                                                                                                                                                                                                                                                                                 TTCAAACA--T---TAAG--ATAAGATATTGTTTATTATT-GTGACATGTGCATACATTCATTAAGCTATACAT-A------T----ATA--CA-ACTGACACA-CTTATTTGGCACC-CGGTTC-ATTGG-GCCTATATGTCAATAGGATAATATAGAAAG---TAAT----TATATACAAAATTCGTATATACT-GTATAATATA--CA----GGTTAACTATGACATAC----AC----AGTCCTGACAAAATATAAGCAAAA-TATTCCCGGAGTATCCAAT-ATTGTCAGTATTG--AGTCT-AGTTATGATAGATATGAT-ATAAATACA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGAGGTATTAAGTCTGACATAATAGTTGGCGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGATAAGAAACTTTGCAAGTTGTCTTGAATCCGCTGACATGATATGTGGAAGT-CGCTGGTTTA-------TATA-C--ATG----TAA---GC--ATTA--TCTACAAA-TAAATC-TCTGAAATT-GTTTTCTCGCAG-GTCATTATA-------CAGTTTACACT-------G------A-------A-AT-AGAAAGTGT-T-------TCTCATTTTC---TA-CT-GAGTTTAACTGACAAAGTCTACAAAGTCTCTAATTAGG--TTGTTCCCATATAAATCTTCCGGTTTCAATTC-TCAGT-GGTAAGATACCAGTTC-----TGACAAAATACAGAGCATGCA-T-TCTTATTTAAGTTCATCATAACGTAGTCCTCGCATTTGATGTGTTTCTTAAACAGGCGATAT-G--TTCT-CTGATTTGATATACTT------TGAACGTCTTCTGACCAGACATTAGAATTATA----ATT-CACTAG---TAATCCATGTGCT-TATG-ATGAGTCAATTATTGTTCTGTTTTC---GTAATTTG-CGGAT---TACCCCAGCGCAGACATTAC-GGGTTTAAAATCA-TGTGACCAATTATTTTTGCA----CA--TTAAA----TAATCGAAATTAAACAC-CTTTTTCGT-AATCAGTCTGTCATCCATCAAAACCACTTTGTGACC-CATATGCAACATGTTTCCCCATCGTCTGCAAACACTTGGTATCCA-CCCG---GTATCCCCAATCATCTCGAAAATTGGCGT------GAAACGATGAATA
gi|9                          :                                                                                                                                                                                                                                                                                          caattatacattctattttttatgtacgtcacatattcttatttgttaaaattattatAAATAAGTAAGTAAGTAAGTAAATATT--TTATTAAA-GTGACATGTGCATACAATAT--ATGTTACAAAT-A------GTTGTATA--CA-A---ACAAA-AACA---AGCACC-CGGCCC-ATTGG-ACCTATAAGTCACC
gi|7                          : aacagggttatttaaagcaaaaaatagtgtttgactagaaaggcattgttttagaacatttgaagaaacaaaatcacacaaacgactgaaataaactaattatagtttaatgttaaacatacgttttgttttattttctaacaaacgatttttggttataatattgtgtaacagttgcagtttcaatgttattactagccgttccaagacgacgatggtctttgttaccatgtcctctgtttacagatatagaaatgctactttatgtgttacaaatatttaaaaataattacaaattgtttcataaaatgtctcacgtgataaataaatatattggatgtATA---AGAGAAG--AG-AAATATTGTTTAT-ATTCGT--TATGT-TATAC---ATACAAATTAT-CAT-A------C----ATA-----ATTGACAAA-ATTATATGGCACCCGGACCA-TTTGA-ATTTATATGCCACCAGGTTATTCAAGAGAG---TAATAAACTATATATACCATTCGTAAATACTGTTAGTATATAGTTAACTTATTTAACTATGAAGTTCA---AA----C-TCCTGACTAAGTATTTGCAAAAATATTCCCTGTGTATTTGAC-ATTGTTTGTATGA--ACGGT-AATTATGGTAAATTTGTT-ATAAATACA-ATAAGACT-ACTTGCAATAGTTCATACATCAACAATACA-----------GTATGACATAATAGTTGACGAAGACAAGATATTACATCTTTTTAAGAAAGCACAGACAAGACATTTTGCAAGTTTTCTTGGATGCGCCGATATAATCTGTGAGACT-C-CTGGTTTA-------TATGTAGCATG----TTA---GC--AATA--TCTACAAA-TAAATC-TCTGAAATA-GTTTTCTCGCAG-GCCATTATA-------CAGTTCACACT-------G------A-------A-AT-AGGAAGCGC-T-------TCGTATCTTCTTGTA-CTCAAATATCA--GACAAta
gi|11                         :                                                                                                                                                                                                                                                                                                                                                       TA--TAGATGAG--ATAAGATATTGTTTATCATT-GTGACATGTGCATACATTCATTAAGTTATACAT-A------T----ATA--CA-ATTGACAAA-ATCATTTGGCACC-CGGCCA-TTTCG-GCCTATATGTCACCAGGATAAT---GAAAG---TAAT----TATATACACAATTCGTAAATACT-CTATTATATA--CA--TAGGTTAACTATGATGTACA---AA----A-TCCTGACAAAATATTGGTAAAA-TATTCCCTGAGTATCCAAT-ATTGTCAGTATGG--AGTGT-AGTTATGATAGATATGTT-ATAAATATATATA
gi|22                         :                                                                                                                                                                                                                                                                                                                                                   tgtaaaagtAGATATG--ATAAGATATTGTTTATCATT-GTGACATATGCATACATTCATTATTTTATGCGT-ATATTATT----ATA--CA-GTTGACAAA-ATTATATGGTAAC-TGGCCCATTTGG-GTTTATATGTCACCAGGGTCATCAAGAAAC---TAAG----TAtatccaatcatggttccaatatttaacatattaaactaatttgataaaaatatgataatt
gi|12                         :                                                                                                                                                                                                                                                                                                                                                             GATAAG--ATACGATATTGTTTATTATT-GTGACATGTGCATACATTAATTATGTCGTACAT-A------T----ATA--CA-ATTGACAAA-GTTATTTGACACC-CTGCCC-ATTGG-TCCAGTTTGTCATCAGGTTAAACAAGAAAG---TATT----TATATACACAGTTCACAAGTACTGCTATTGTATA--CA--TAGGCTAACTATGAAGCATA---AA----A-TGCTGACAAAATATTAGTAAAA-TATTCCCTGTGTGTATAATAATTTT---TATAGTTCGTGTGAGCGAT--TA----TGTT-ATAAATACA-CTA--AAATGCAGGCAGTAGATCAAACCTTATCAATACATGAAGTATTAAATCTGACATAATAATGTGCGAAAACA
gi|21                         :                                                                                                                                                                                                                                                                                                                                                             GATAAG--ATCAATTATTGTTTATTATT-GTGACATGTGCACACATTCATCATGTTATATAT-A------T----ATA--TATATATATACA-ATT----GACA---AAAGTT-TATGGCACTTATATGTCGCCAAGATAATCAAGAAAGTTATAAT----TAT-------ATTC-TAAG-----GTATTATTTA--CA--GTTATTAACT
gi|6                          :                                                                                                                                                                                                                                                                                                                                                                 AG--ATAAGATACTGTTTATTATT-GTGACATGCG---ACATTCATTATGTTGTACAT-A------T----ATA--CA-ACTGATA-A-AT-ATATGGCACC-CAGCCC-ATTGG-GCTAATATGCCACCAGATTAATCAAGAAAG---TAAT----TATATAGATGATTCGTGAATACTGCTATGATATA--CA--TATGTTAACTTTTAAGTACATGTACGTAAA-TGCTGACAAAATATTAGCAAAA-TATTTC-TGTGTATTTAAT-ATTGGTAGTATGG--ACGAT-AGTTATTGTAATTTTTTTTATAAATATA-ATAAGAAT-ATTGACAATAGATCATACATCAACAAAACATGAACTATAAAGTCTGACGTAATAGTTTACAAAAACATCACATTTCTCCTTTTTATGAAAGCACAGACAAACAA------AGGTTTTCTCGGATGCGCTGATATGATATGTGAAAGT-CGGT-GTTTA-------TATG-C--ATG----TTA---GCAAATTAATCTTA-AAA-TA--TC-TAT---ATA-GTT
gi|25                         :                                                                                                                                                                                                                                                                                                                                                                      tTACATATT--TTATTAAT-GTGACATGTGCAT-----------GATATACAT-G-------------A--CA-A-TAACACG-ATggcaaacgccattttctgtttcgttgactgcaattagtatttgccttactaagttctatatctgaccctgaaaagtgcaca
gi|23                         :                                                                                                                                                                                                                                                                                                                                                                  gtaagtaaaTATTGTTTATCATT-GTAACAT-T---CACTAT------GTTAAACAT-A------ATTATATA--CA-ATTGACAAA-ATTATATGGCATC-CGACCA--TTGG-GCCTTTATGCCACCAGCATATGTAAAAGGA---CATT----TATATacaaataagaaaataataaatatcacctggtccactgcgcttttcggtcatataattatggaatagtt
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                               GTTTATTATT-GTGACATGTGCATACATTCATTAAGTTATACAT-A------T----ATA--CA-ATTAACAAA-ATTATTTGGCACC-CGGCCC-ATTGG-GCCTATATGTCACCAGGATAATCAAGAAAG---TAAT----TATATACAAAATTCGTAAATACT-CTATTATATA--CA--TAAGTTAAATATGACGTACA---AA----A-TCCTGACAAAATATTAGTAAAA-TATTCACTGAGTATCCAGT-ATTGTCAGTATGG--AGTGT-AGTTA---------------TAAATATA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGATGTATTAAGTTTGACATAATATTTTACGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGAGAAGAAACTTTGCAAGTTGTCTTGGATGCGCTGATATGATATATGCAAGT-CGTTAGTTTA-------TATG-C--TTG----TAA---GC--ATTA--TTTACAAA-TAAATC-TCTGAAATT-GTTTTCTTGCAG-GTCATTATA-------CAG-------T-------gaatatcccctttcaatattg
gi|37                         :                                                                                                                                                                                                                                                                                                                                                                                TTTATTATT-GTGACATGTGCATACATTCATTAAGTTATACAtcacactgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccttaaaaaggcgatatgttctcagttttaatattctttgaacgtcttctgaccagacattagaataatagtttactagtaatccatgtgcttgtgataagtcaataattgttctgttttcgtaatttgcggataaccctagcatagacataacgtgtttaatatcatgtgaccaattatttttgcacattaaatagtcggaatttaacacttttttgtaatccgtctgtcatccatcaaaatcactctgttccacatacgcaacatgttt
gi|20                         :                                                                                                                                                                                                                                                                                                                                                                                 TTATTATA-GTGACATGTGCAAA--TGCATAACATTATATAT-A------A----ATATGCA-ATTAACACAGAACA-----CACC-CGGCCC-AATGG-ACCTTTAAGTCACCattgtatttattgaaaatcatt
gi|3                          :                                                                                                                                                                                                                                                                                                                                                                                       TT-GTGACATGTGCGTACATTTATTAAGTTATACAT-A------T----ACA--CA-ATTGACAAA-ATTATTTGGCACC-CGGCAC-ATTGG-GCCTATATGTCACCAGGATAATCAAGAAAG---TAAT----TATATACAAAATTCGTAAATACT-CTATTATATA--CA--TAGGTTAACTATGACGTACA---AA----A-TCCTGACAAAATATTAGTAAAA-TATTCCCTGTGTATCCAAT-ATTGTCAGCATGG--AGTAT-AGT-ATGATAGATATGTT-ATACATATA-ATAGGAAA-ACAGGCAATATATCATAAATCAATACTACATGAGGTATTA-------------------CGAAAACAAGGTATTTCTTCTTTTTAAGAAAACACAGACAAGAAACTTTGCAAGTTGTCTTAGATGCGCTGATATGATATGTGCTAGT-CGTTGGTTTA-------CATG-T--ATG----TAA---AC--ATTA--TTTACAAA-TAAATC-TCTGGAATT-GTTTTCTCGCAG-GTCATTACA-------CAG-------TTAACACTG------A-------A-AT-AGAAAGTGT-T-------TT-CATCTTC---TA-CT-GAATTTGACTGACAAAGTCTACAAAGTCACTGATCAGG--TTGCTCCCCAACATACCTTCCGGTTTCAATTC-TGAGT-GGCAAGATACTAGTTCTAAATTGACACAAAACAGAGCGTCCA-T-TCTTGTTTAAGTTCATCATAATGTAATCCTCACATTTAAAATTTTCCTTAAACAGGCGATGC-G--TTCT-CAGTTTTGATATACTT------TGAACGTCTTCTGACCAGACATTAGAATAATA----GTT-TACTAG---TAATCCATGTGCT-TGT--------TAATAATTGTTCTGTTTTC---GTGATTTG-CGGAT---AACCCCAGCATAGACATAAC-ATGTTTAATATCA-TGTGACCAATTATTTTTGCA----CT--TTAAA----TAGTCGGAATTAAACACTTTT-TTTGT-AATCCATCTGTACTCAATCAAAATCACTCTATTTGA-CATACGCAACATGTTTCCCCATCGTCTGTAAACACTTGGTATCCA-CCCG---GTGTCCCCAACCATCGCGAGAATTGGCGT------GAAGCGATGAACACCAAGAAAGTATCTCATGGCTCTATTCTGAACATTATC-TATATGTTGATACTTCTTGATACACCACACTGAGGAGGAATAGTCGAGGATGGGCACAATACAtatatgaatgtacatacacatataccctaatgtactatatattaagcatgcttgaaataatacatgtttgattacaattcgatataacagtttgtgcatttcgtctgtttgaaactggtt
gi|30                         :                                                                                                                                                                                                                                                                                                                                                                                                                  GTTATACATTA------T----GTA--CA-ATTTACAAA-ATTGTATGGCACC-CAGCCC-ATTGG-GCCTCTATGTCACC
gi|32                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   acaacaatacttacaacattgtgtttataaatggtaaaaaatgctttgatGTACA---AA----A-TCCTGATAAAATATTAGTAAAA-TATTCACTGTGTATTTAAT-ATTGTCAGTATGG--ACGGT-AATTTTGTTAAGAATGTT-ATAAATACA-ATAGAA
gi|31                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CATCAACAATATATCAGGTATTAAGTCTGATATAATAGTTAACGAAAACAAGACATTTCTTCTTTTTAAGAAAGCAGAGACAAGAAAC
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TACTTCTTCTTCTCATGTAAGCATATACAATATATTTAGCTACTTTTCTGGGA-ACG-TG-TGTGACAAG---AAATACAC--ATTTAGCCATACTATC-C--ATACCATTAAACTGC--AT-A--TTTGAAAA-TTGTTCATTCAAAAT--GTCTGCT-GTAATATCATTGTA-------AAA-------T-------GTACATTA-------G-ATCAAAAAATGA-T-------TTTCATCTTC---AATCT-GAAGTAGATT-ACAAATTGTGCAGAGTCTTTGCTCTCG--CGGCTCACCGACATATCGTCCCGTTTCTATTC-TTAGT-GGTA--------------AATTGGGCCAACAATGAACGTTCC-TGT-TTGCTCAAATTTAAAAGCACATATTGTTCGAATTCAAATTTATCTTTAA--AAGTTACAT-AAGTCCG-TAATTTAGGCACTCTTACTACATAAAC--CTT----CCAGATATTTGAGTAGTA----TTC-CGTTAGCT-TAGTCTAAACAAT-TTTT-ATGTGT--ATAACAGTTTTGTTTTCAAAATAGTTTATCAGAT------TCGAAT-TGGACATAACTGT-TTTCAGATCA-CTACACCAATTACTTTgtgtttaattgtt
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TTTTTTCTTTTTAAGAAAGCACAGACAAGATACTTTGCAAGATGTCTTGGATGCGCTGATATGATATGTGCAAGT-CGTTGATTTA-------TATG-C--TTG----TAA---GC--ATTA--TTTACAAA-AAAT-C-TCTGAAATT-GTTTTCTCGCAG-GTCATTATA-------CAG-------TTCACACTG------A-------A-AT-AGAAAGTGT-T-------TTTCATCTAC---TA-CT-GAATTTGACTGACAAAGTCTACAAAGTCTCTGATCAAG--TTGCTCCCCAACATACCTTCCGGTTTCAATT
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GCGCATCCAAGAAAACTTGCAAAATGTCTTGTCTGTGCT
gi|17                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ataagagaagagaaatattgtttatattcgttatgttatacatacaaattatcatacataattgacaaaattatatggcacccggaccatttgaatttatatgccaccaggttattcaagagagtaataaactatatataccattcgtaaatactgttagtatatagttaacttatttaactatgaagttcaaactcctgactaagtatttgcaaaaatattccctgtgtatttgacattgtttgtatgaacggtaattatggtaaatttgttataaatacaataagactacttgcaatagttcatacatcaacaatacagtatgacataatagttgacgaagacaagatattacatctttttaagaa----TAA---AC--AT-A--TCAGCAAAGTA--TC-T-TGAAACACATTTTCTCTGAT-ATTATTGTAAAGTCCACAA-------T-------G------T-------A-AC-AGAAAATGT-T-------TCTCGTCTTC---AA-CG-GATCCTGTGTCACAGAATCTTCATAGTCTCTGTTCTGGAGTT--TCACCAATATACCTTCCAGTCTCTATTCTTAAATAGGTAAAATGCCACACCTAAATTGACACATAATAGATCTCTCGTT-T-TTCTTTAAATTGGTTACACCATAcgatataatctgtgagactcctggtttatatgtagcatgttagcaatatctacaaataaatctctgaaatagttttctcgcaggccattatacagttcacactgaaataggaagcgcttcgtatcttcttgtactcaaatatcagacaa
gi|5                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TTATTATA---------G-------T-------G------ATATGTGTACAT-GGAAAGTGTGTGACAAGATTTCATCTTC---AATCT-GAAGTAGATT-ACAAAGTGTG---AGTCTTTGCTCTCG--TTGCTCACCGACATATCGTCGCGTTTCAACTC-TTTGA-GGTAGAATACCACATCTAAATTGGGTCAACAATGAACGTTCC-TGT-TTGTTAAATTTTAAAACCATATATTGTTCAAGTTCAAATTTATTTTTAA--AAGTAACATAA--GTCTGCAATTTAGGCAT-CTT------GCTACTTCTACCTTCCAGATATTTGAGTAGTATTTCGTTATCTTAGTCTTAA-CAATGT-CTATGTGTATAA--CA------GTTTTGTTTTCAAAATAGTTCATCAGATTTAAAT-------TGGACAAAACTGT-TTTCAGATCATTGT-ACCAATTATGTTTACA----CTTGTTATAGTTCATGTT-AAAG-ACACGCCTGGTT------AGCCTATTGTCATCAAACAATACAAGTCTGTTCCAGTAT-CGTATCATTGCTACCCAACGGCGATAACAACTAGGAAGCCATCCCGCACATG----CGGTGATTGCAAGTTTCGGGGC------AAATCTGTGTACGCCAAGAAAGTACCGTAAAGCACGATTCTGTACATTGTC--------TGGTAATGTTTGAATCCCCATACTGATGCACAGTAGTCCAATATTGGTACAAAACACGATTCAAATAGTCTTTTGGTAG--TTTAATATCTTTTCCAAG-GTATAAGTCATTTATctg
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TCCTTAAAAAGGCGATAT-G--TTCT-CAGTTTTAATATTCTT------TGAACGTCTTCTGACCAGACATTAGAATAATA----GTT-TACTAG---TAATCCATGTGCT-TGTG-ATAAGTCAATAATTGTTCTGTTTTC---GTAATTTG-CGGAT---AACCCTAGCATAGACATAAC-GTGTTTAATATCA-TGTGACCAATTATTTTTGCA----CA--TTAAA----TAGTCGGAATTTAACAC--TTTTTTGT-AATCCGTCTGTCATCCATCAAAATCACTCTGTTCCA-CATACGCAACATGTTTt
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  gtttattattgtgacatgtgcatacattcattaagttatacatatatacaattaacaaaattatttggcacccggcccattgggcctatatgtcaccaggataatcaagaaagtaattatatacaaaattcgtaaatactctattatatacataagttaaatatgacgtacaaaatcctgacaaaatattagtaaaatattcactgagtatccagtattgtcagtatggagtgtagttataaatataataggaaaacaggcaatatatcatacatcaacaatacatgatgtattaagtttgacataatattttacgaaaacaagatatttcttctttttaagaaagcacagagaagaaactttgcaagttgtcttggatgcgctgatatgatatatgcaagtcgttagtttatatgcttgtaagcattatttacaaataaatctctgaaattgttttcttgcaggtcattatacagttcacactgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTACACATCAC-ATGCATAATGTCA-AAAGTCCAGTTATTTGTACAGCGGTT--ATAA--------TCATGCATAAATACTTTCTTT-GTCAGTCTAT-TATTATCCATGATAATAAGTCCATTCCA-AAACCGTAACATCCATGTCCATCGTCTGTACACGCTTGGTATCCA-GCCA---GTATCACC------CACGAGAGCTGATGTCGGCCCAAACCTACGTACGCCAAGGAAATAACGCATAGCTCGATTTTGGACGTTGTCAATCGT-TTGAAACTGTCTATATCCCCATACTGATGCACAGTAGTCTAGGATCGGCACAACACACGAATTGTAAAGT-TTTTCAAA-----CGAAC---------GGAGGAT--GTATTT
16 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): CTGTTTCTACTCTTAAACTAGAATACCACCTCTAAACTGGGTCAACAACAAACGTTCATGTTTCTTCTCTTAGAGGTAGAATACATTGTTCAAGTTCAAAAAGTGAAAAGTTACATAAATCCGCAATTTAGACACTCATTTACTTCTGCCTTCAAGTTGTTTGAGTAGCATATCGTTATCTTAGTATAGTGATGTCTATGTGTATAACATATTTGTTTTCAAAATAGTTTAACAGATTGAAATTGGACGTGACTGTTTTCAAATCACTGCACCAATTATTTT
Unaligned ( gi|14 ): ATAAGTAAGTAAATAGTTTATAATAGTGGCATGTGCATGGCAGTACAATAATATATGCATTGCAAAATGATAAATAGTAGATGACCCGGCCCAGTGGGCCTACAAGTCACTGCCAATAAATAGAAGTGGTATGCAATAGTAGATGACCCGGCCCAGTGGGCCTATAAGTCACTGCGAATAAATAGAAGTCATATGCAATTTCATTTGATAATAAGCAATGGGACATAAATAGGATAATGTAGGTAAACTTTCAAAGGCACAAATGTAGGTAAA
Unaligned ( gi|15 ): ATTATTAAAGTGACATGTGTACATGTAACATGACATATATATAATTTTAAACAACACACCCGGCCCAATGGACCTATAAGTCACCTATACAAATAAACAATTATATTATTTCACATGAAATTATGCTTGTTATTAAACACCATAAAAATGAATAATATGTACAAGGTAATTACATAACAACATATTAATTACGATTGTTTGAAAAGTCATTGGTTATATAATGTATTTCTTCTTCTCATGTAAGCCTTAACAATATATTTAGCTACTTTTCT
Unaligned ( gi|18 ): AAGTAAGTAAGTAGTAAGTAAGTGAGTCAGTATAGTGGGACATCTGTACATGTATCATGACATACATATACAGTATTTGTAACAACACGCCGGGCCGAGTGGAGCTATAAGTCACCTATAAAGATAAATAGTTATTATTACATTAATGTAATTATATTATTTGACATATAAGCATGTTTGCAATTAAACATCATCAAACAATCCAATTGAATGGTTGCATGCATGTTTTAAAA
Unaligned ( gi|19 ): CAAAGTGACATGTGCATCGACATATCAATAAAACTCAATAAACAATAAAAGAGACTGAAGCGTCCGGCCAAATGAACCTATAAGTCACTATGGACAATACAAAACATCATATTTAAAACATGACATCATCGGTTTTGACGATATTAAATTCTATTTAATATACAAAAATGTTATGCTATATGTAAACGTGTCTTTTAACAAATAATACTGATAACTTTAATTATACTGTT
Unaligned ( gi|24 ): TGCCAAGAAAGTATCATAAAGCACGATGTTGAATGTTGTGTATTGTCTGACGCTGTATGAAACCTTATACGGCAGAACAACGGTCTAATATTGGAATGAGGCCTGAATGAAATATATTATTTGAATCCAATGTCTTT
Unaligned ( gi|26 ): ATTTGTAAGTAAGTATGTAAGTAAGTTTTTATTATAAAAACGTGTGTAAATTTATAACATAATATGTTAATATGCAGTTTTTACAGAACACAATCGGCCCAATGGACCTAGTCACATATATAAATAT
Unaligned ( gi|27 ): AATACTTCTTCATGTGTTAATAATATTTAAAAAAAATATACAAATTGTTTAAAAAATGTGTCATGTGATAACAATATTGGATGTATTTTAAGTACGTTAAAAGGACGTGGCTAACTGTTTTA
Unaligned ( gi|28 ): TAAGTATGTAGATATTGACATGTGCATGACAATACAATAACATGCAAAATGATATGTGGAGCACTAAGGCCTAACAGGCATATAATAATTCGCTACCAAAAAACAAAAATGTCATTCCAT
Unaligned ( gi|29 ): TAAGGTGACAGGTACACATGTAACATGACATATATTTGGAACACACACACGATGGAACCATAACAGATACTATCTTAGACAAGCATCATTAAATCATTCATTATGGTTAGACACTAAA
Unaligned ( gi|33 ): ACCTTCCAGATATTTGAGTAATAGTCCGTTATCTTGGTCTTAACGATATCTATGTGTATAACAGATTTGTTTTCAAAAAAGTTTATCAGATT
Unaligned ( gi|34 ): TTGTGTATTAAAGTGACATGTGTGCAACAAAATTATAGTAATTACATTCAAATTTATCAATGGCACACCCGACCAGATGGACCTAAATC
Unaligned ( gi|35 ): TGTGCATACAATGTATATTACAAATAGTTATATACAAAAAAAAAAAAGCGGCCCATTGGACCTATAAGTCACCTAAACTATTAGGTAT
Unaligned ( gi|36 ): GTCACTTCCAATAAATAGAAGTAATATGAAATTCATATGATAATAATCAACATAATAGACTATTGTAGGTACACATTTGCAT
Unaligned ( gi|38 ): AAAAAACAAGCACCCGGCCCATTGGACCTATAAGTCACCTAAACTGTTAGGTATAAACTG
Unaligned ( gi|39 ): TCTTAGAGGTAGAATACCACATCTAAATTGGGCCAACAATGAACGT






Alignments
lowQualScore                  :                                                                                                                         111            111                                                                   111111                       11111111111                                                                                         111               11        11111                            11111111111                                                                           1111                                                                                                                                                                                                                                                                        1111111   6666666  111111                1111111            1                                                                                                                            222                                                      1  11                              111111                 1111                  2222   1         111             2222      11                  222        2     2222222222222          11111                                                                     2                                                                                                                      222222                                                  5555555555555                                                                      2  1      222            2222222    11         
lowQualScore                  :                                                                                                                         111       0    000               2          1  44   333   3  1 88888888888      22 1 999999    1     555555   1   22222222222  22 22  44444         33          2      555555      44        444    5555     888888   000             3 33        22222 3  6666666           1     33333333333   55                 4             2         4                1           1111 2             4   0    5          1                      0      0  1             2                                                                 888                   1 888     66  0        888        777  66  1 66        4  0    0      55            5         6666666   5555555  666666    5         5 6666666 4        1 1            7            0        1  1  77      1  2                 0    5 1  88     4      55  0       66   1 44  1     1 222 8    5   5    9999 4   1  1 1   11       1  3        1  55  6   888    1      2     1   666666   5  4     0 5  2222       2     77   0000   1      77 000 5 1      6  0000   5  55     5    1       888        2     8888888888888          11111     1     88888                6 99  3         6        99   3      1  6       6                            6   3            1                                        9                    333333   1 1   1              1 3  1   1        1       7777777777777               1           5 5         1     6       1      1 4 1 1 2 1  0  0 1 555  11 22     3333333 1  88  22     
lowQualScore                  :                                                                                                                         ...       .    ...               .          .  ..   ...   .  . ...........      .. . ......    .     ......   .   ...........  .. ..  .....         ..          .      ......      ..        ...    ....     ......   ...             . ..        ..... .  .......           .     ...........   ..                 .             .         .                .           .... .             .   .    .          .                      .      .  .             .                                                                 ...                   . ...     ..  .        ...        ...  ..  . ..        .  .    .      ..            .         .......   .......  ......    .         . ....... .        . .            .            .        .  .  ..      .  .                 .    . .  ..     .      ..  .       ..   . ..  .     . ... .    .   .    .... .   .  . .   ..       .  .        .  ..  .   ...    .      .     .   ......   .  .     . .  ....       .     ..   ....   .      .. ... . .      .  ....   .  ..     .    .       ...        .     .............          .....     .     .....                . ..  .         .        ..   .      .  .       .                            .   .            .                                        .                    ......   . .   .              . .  .   .        .       .............               .           . .         .     .       .      . . . . . .  .  . . ...  .. ..     ....... .  ..  ..     
lowQualScore                  :                                                                                                                         888       8    000               0          5  55   777   8  0 77777777777      55 8 333333    8     000000   8   55555555555  55 55  33333         88          2      555555      22        777    7777     888888   222             6 99        77777 6  7777777           9     44444444444   55                 0             6         4                9           2222 3             4   2    7          0                      2      1  4             8                                                                 888                   0 888     99  2        888        888  11  9 11        4  8    1      44            0         2222222   0000000  444444    0         0 2222222 2        0 4            9            3        0  0  99      0  7                 8    0 0  66     2      55  1       00   0 88  1     0 999 9    7   7    0000 0   4  0 0   77       0  3        4  77  6   444    3      1     0   444444   7  3     1 1  1111       1     99   0000   4      99 000 7 4      6  7777   6  00     7    7       444        7     9999999999999          88888     0     22222                7 22  2         7        22   2      8  7       7                            7   2            0                                        6                    000000   0 0   0              0 2  4   4        0       8888888888888               4           8 0         0     4       0      0 2 0 0 5 2  0  2 0 000  33 00     0000000 0  55  00     
consensus                     :                                                NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCAAATA--TAGATAAGATAAG---ATATTGTTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TANGT----------TATACA--T-A------TATA-CAATT---G--ACA-AAAT--TAT--N--TG--G--CA-----CCCGGCCCA-TTGGGCCTATANGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--NAATTCGTAAATAC-TGCTATTATAT-----A-CA--T--AGGTTAACTATGACGTACA-------A---AAT--CCTGACAAAATATTAGT-AAAATATTCCCTGNGTATCCAAT-ATTGTCAGTATGGAGTGTAGTTATGATAGA--TATGTTATAAATACA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGAGGTATTAAGTCTGACATAATAGTTTACGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGACAAGAAACTTTGCAAGTTGTCTTGGA---TGCGCTGATATGATATGTGNA---AGTCG--CTGGTTTATAT---GCATGTAA---GC--ATTA--TTTACAAA-TAAATCTCTGAAATN-GTTTTCTCGCAG-GTCATTATA-------CAGTT-ACACTG------AAAT-AGAAAGTGT-T-------TCTCATCTTCNA-CTGAATTTGACTGACAAAGTCTACAAAGTCTCTGATCNGG--TTGCTCCCCGACATACCTTCCGGTTTCAATTC-TNAGT-GGTAAGATACCACNTCTAAATTGGNNCAACANNGAGCGTTCATG--TCTTGT-TTA-AGTTTATCANAACGTANTNCTCGCGTTCAAANTTTTCCTTAAACAG--GCGATAT--GTCCTCAGTTTNGACATNCTT------TGA-ACGTCTTCTGACC----AGACATTNGAGTA--ATA----GTT-TACTAG--T---A-ATCCATGTGCTT-TGATGNGTCAATAAC-TGTTCTGTTTTCAAAGTAGTTTG-CGGAT---AACCCCAGCATAGACATAAC-GTG-TTTAANATCAC-GTG-ACCAATTATTTTTGCA-C--TTTAAATAGTCG-GAATTAAA--CACTTTTTTT-GT-AATCCGTCTGTCATCCATCAAAATCACTCTGTTCCA-CATACGCAACATGTTTCCCCATCGTCTGTAAACACTTGGTATCCACCCGGTATCCCCAATCATCGCGAGAATTGGCGT------GAANCGATGAACGCCAAGAAAGTATCGTATAGCTCGATTCTGAACGTTGT---C---TGTATGTTGATACTGTTTGAATCCCCATACTGANGAACAATAGTCNAGGATNGGCACAANACACGANTCGNATAGT-TT-TTCGNAG--TTTAATNTCTTTTCCAAGAGTATAAGTNNTTTAT
Reference ( family-717 )      :                                                NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCAAATA--TAGATAAGATAAG---ATATTGTTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TANGT----------TATACA--T-A------TATA-CAATT---G--ACA-AAAT--TAT--N--TG--G--CA-----CCCGGCCCA-TTGGGCCTATATGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--NAATTCGTAAATAC-TGCTATTATAT-----A-CA--T--AGGTTAACTATGACGTACA-------A---AAT--CCTGACAAAATATTAGT-AAAATATTCCCTGTGTATCCAAT-ATTGTCAGTATGGAGTGTAGTTATGATAGA--TATGTTATAAATACA-ATAGGAAA-ACAGGCAATANATCATACATCAACAATACATGAGGTATTAAGTCTGACATAATAGTTNACGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGACAAGAAACTTTGCAAGTTGTCTTGGA---TGCGCTGATATGATATGTGNA---AGTCG--CTGGTTTATAT---GCATGTAA---GC--ATTA--TTTACAAA-TAAATCTCTGAAATN-GTTTTCTCGCAG-GTCATTATA-------CAG-------TG------AAAT-AGAAAGTGT-T-------TCTCATCTTCNA-CTGAATTTGACTGACAAAGTCTACAAAGTCTCTGNTCNGG--TTGCTCNCCGACATACCTTCCGGTTTCAATTC-TNAGT-GGTAAGATACCANNTCTAAATTGACACAANANAGAGCGTTCNTG--TCTTGT-TTA-AGTTCATNACAACGTANTNCTCGNATTCAAANTTNTCCTTAAACAG--GCGATAT--GTTCTCAGTTTTGATATNCTT------TGA-ACGTCTTCTGACC----AGACATTAGAATA--ATA----GTT-TACTAG--T---A-ATCCATGTGCTTGTGATGAGTCAATAAT-TGTTCTGTTTTCAAAGTAATTTGTCGGAT---AACCCCAGCGTAGACATAAC-GTG-TTTAANATCAT-GTG-ACCAATTATTTTTGCA-C--TTTAAATAGTCG-GAATTAAA--CACTTTTTTTCGT-AATCCGTCTGTCATCCATCAAAATCACTCTGTTCCA-CATACGCAACATGTTTNCCCATCGTCTGTAAACACTTGGTATCCACCCGGTGTCCCCGATCATCGCGAGAATTGGCGT------GAANCNATGNACGCCAAGAAAGTANCGCATAGCTCGATTCTGNACGTTGT---C---CGT---TTGATACTGTTTGAATCCCCATACTGATGCGCAGTAGTCNAGGATCGGCACAANACACGANTCGNANAGTCTT-TTCGNAG--TTCGANNTCTTTTCCAGGAGNATAAGTNNTTTAT
gi|1                          :                                                                                                                 TCCAAATA--TAGATAAGATTAG---ATATTGTTTATTATT-GTGACATGTGCAT--ACTT-TCTT-CAAGT----------TATACA--T-A------GATA-CAATT---G--ACA-CAAT--TAT--T--TG--G--CA-----CCAGACCCT-TTGGGCCTATATGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--AAATTCGTAAATAC-T-TTATTATAT-----A-CA--T--TGGTTAACTATGACGTACA-------A---CAT--CCTGACAAAATATTGGT-AAAATGTTCCCTGAGTATCCAAT-ATTGTCAGTATGGAGTGTAGTTATGATAAG--TTTGTTATAAATATA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGAGGTATTAAGTATGACATAATAGTTTACGAAAACAAGATATTTCTTCTTTTTAAGGAAGCACAGACAAGAAACTTTGCAAGTTGTCTTGGA---TGCGCTGATATGATAGGTGGA---AGTCG--CTGGTTTATAT---GAATGTAA---GC--ATTA--TTTACAAA-TAATTCTCTGAAATA-GTTTTCTCGCAG-GTTATTATA-------CAG-------TG------AAAT-AGAAAGTGT-T-------TTTCATCTTCTA-CTAAATTTGACTGACAAAGTCTACAAAGTCTCTGATCAGG--TTGCTCCCCAACATACCTTCCGGTTTCAATTC-TGAGT-GGTAAGATACCAGTTCTGAATTGACACAATACAGAGCGTTCA----TTTTGT-TTA-AGTTTATCATAACATAGTCCTCACATTTAAATTTTTCCTTAAACAG--GCGATAT--ATTCTCAGTTTTGATATACTT------TGA-ACGTCTTCTGACC----AGACATTAGAATA--ATA----GTT-TACTAG--T---A-ATCCATGTGCTTGTGATAAGTCAATGAT-TGTTCTGTTTTC---GTAATTTG-CAGAT---AACCCCAGCATACACATAAC-GTG-TTTAATATCAT-GTG-ACTAATTATTTTTGTA-T--TTTAAAAAGTCG-AAAGTAAA--CACTTTTTTTTGT-AATCCGCCTGTCATCCATCAAAATCACTTTGTTCCA-CATACGCAACATGTTTCCCCATCGTCTGTAAACACTTGGTATCCACCCGATGTCCCCAATCATCGCAAGAATTGGCGT------GAAGAGATGAACACCAATACAGTATCTTATGGCTCTTTTCTGAACATTAT---C---TTTATGTTGATACTTCTTGAATCTCCACACTGAGGAGCAATAGTCAAGGATAGGCACAACACATGATGTGTACAGT-TT-TTCGTAGGATTTGAACTCTTT---AAGAGTAT--GTATTTTAT
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            tgattatgtctattgattatgtcattaacaagcgatcttgctttctgcctaaatggtcatccgtgTACACATCAC-ATG-CATAATGTCAA-AAG-TCCAGTTATTTGTACAGCGGTT---ATAATCATGCAT-AAA--TACTTTCTTT-GTCAGTCTAT-TATTATCCATGATAATAAGTCCATTCCA-AAACCGTAACATCCATGTCCATCGTCTGTACACGCTTGGTATCCAGCCAGTATCACC------CACGAGAGCTGATGTCGGCCCAAACCTACGTACGCCAAGGAAATAACGCATAGCTCGATTTTGGACGTTGT---CAATCGT---TTGAAACTGTCTATATCCCCATACTGATGCACAGTAGTCTAGGATCGGCACAACACACGAATTGTAAAGT-TT-TTCAAActataattccaccaagtgcacggcctgctgctttcccgagcgattcactagtgtacattaagtggttcttttcatggaaaataacccctagatatttgtata
gi|11                         :                                                                                                                 cgagttTA--TAGATGAGATAAG---ATATTGTTTATCATT-GTGACATGTGCAT--ACAT-TCAT-TAAGT----------TATACA--T-A------TATA-CAATT---G--ACA-AAAT--CAT--T--TG--G--CA-----CCCGGCCAT-TTCGGCCTATATGTCACC----A-GGATAAT----GAAAG---TAAT----TATAT------ACA--CAATTCGTAAATAC-T-CTATTATAT-----A-CA--T--AGGTTAACTATGATGTACA-------A---AAT--CCTGACAAAATATTGGT-AAAATATTCCCTGAGTATCCAAT-ATTGTCAGTATGGAGTGTAGTTATGATAGA--TATGTTATAAATATATATAcgaacggaggatgtatttctttgttacttcttt
gi|12                         :                                                                                                                    tgtaaaagtGATAAGATACG---ATATTGTTTATTATT-GTGACATGTGCAT--ACAT-TAAT-TATGT----------CGTACA--T-A------TATA-CAATT---G--ACA-AAGT--TAT--T--TG--A--CA-----CCCTGCCCA-TTGGTCCAGTTTGTCATC----A-GGTTAAA-CAAGAAAG---TATT----TATAT------ACA--CAGTTCACAAGTAC-TGCTATTGTAT-----A-CA--T--AGGCTAACTATGAAGCATA-------A---AAT--GCTGACAAAATATTAGT-AAAATATTCCCTGTGTGTATAATAATTTT---TAT--AGT-TCG-TGTGAGCGAT-TATGTTATAAATACA-CTA--AAATGCAGGCAGTAGATCAAACCTTATCAATACATGAAGTATTAAATCTGACATAATAATGTGCGAAAACAtatccaatcatggttccaatatttaacatattaaactaatttgataaaaatatgataatt
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GTTTCTACTC-TTAA--ACTAGAATACCACCTCTAAACTGGGTCAACAACAAACGTTCATGTTTCTTCTCTTAGAGGT----AGAATACATTGTTCAAGTTCAAAA-----AGTGAAAAGTTAC-ATAA--ATCCGCAATTTAGACACTCAT------TTA-----CTTCTG-CCTTCAAGTTGTTTGAGTAGCATATC--GTTATCTTAG--T---ATAGTGATGT-CT----ATGTGT--ATAACATATT-TGTTTTCAAAATAGTTTAACAGATTGAAAT-------TGGACGTGAC--TGTTTTCAAATCAC--TGCACCAATTATTTT
gi|14                         :                                                                                                                            ctATAAG-TAAGT--AAATAGTTTATAATA-GTGGCATGTGCAT--GG----CAG-TACA------------ATA-A--T-A------TATG-CA-TT---G---CA-AAAT--GAT--AAATA--G--TAGATGACCCGGCCCA-GTGGGCCTACAAGTCAC
gi|14                         :                                                                                                                                                                                                                                                              A-----CCCGGCCCA-GTGGGCCTATAAGTCACT----GCGAATAA------ATAG---AAGT----CATAT------GCA--tgccaataaatagaagtggtatgcaatagtagatgacccggcccagtgggcctataagtcactgcgaataaatagaagtcatatgcaatttcatttgataataagcaatgggacataaataggataatgtaggtaaactttcaaaggcacaaatgtaggtaaa
gi|15                         : ataagtaagtaaatagtttataatagtggcatgtgcatggcagtacaataatatatgcattgcaaaatgataaatagtagatgacccggcccagtgggcctacaagtcactgccaataaatagaagtggtatgcaatagtagatgTTATTAAA-GTGACATGTG--T--ACAT-GTAA-CATG--------------ACA--T-A------TATA-TAATTTTAA--ACA-ACA------------------CA-----CCCGGCCCA-ATGGACCTATAAGTCACC-------TATA---CAAATAAA---CAAT----TATATTATTTCACATGAAATT-----ATGCTTGTTATTAAAC-----ACCA--TAAAAATGAATAAT-ATGTACA-------AGGTAATTACATAACAACATATTAAT-atttcatttgataataagcaatgggacataaataggataatgtaggtaaactttcaaaggcacaaatgtaggtaaa
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      aTTTTTTCTTTTTAAGAAAGCACAGACAAGATACTTTGCAAGATGTCTTGGA---TGCGCTGATATGATATGTGCA---AGTCG--TTGATTTATAT---GCTTGTAA---GC--ATTA--TTTACAAA--AAATCTCTGAAATT-GTTTTCTCGCAG-GTCATTATA-------CAGTTCACACTG------AAAT-AGAAAGTGT-T-------TTTCATCTACTA-CTGAATTTGACTGACAAAGTCTACAAAGTCTCTGATCAAG--TTGCTCCCCAACATACCTTCCGGTTTCAATTtacgattgtttgaaaagtcattggttatataatgtatttcttcttctcatgtaagccttaacaatatatttagctacttttct
gi|17                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TAA---AC--AT-A--TCAGCAAAGTA--TCT-TGAAACACATTTTCTCTGAT-ATTATTGTAAAGTCCACAA-------TG------TAAC-AGAAAATGT-T-------TCTCGTCTTCAA-CGGATCCTGTGTCACAGAATCTTCATAGTCTCTGTTCTGGAGTT--TCACCAATATACCTTCCAGTCTCTATTCTTAAATAGGTAAAATGCCACACCTAAATTGACACATAATAGATCTCTCGT---TTTTCT-TTA-AATTGGTTACACCATACT
gi|18                         :                                                                                                                                                      TAGT-GGGACATCTG--T--ACAT-GTAT-CATGA----------CATACA--T-A------TACAGTATTT---GTAACA-ACA------------------CG-----CCGGGCCGA-GTGGAGCTATAAGTCACCTATAA-AGATAA------ATAG---TTAT----TAT-T------ACAT-TAAT--GTAATTA-----TATTATTTG----A-CA--T--Ag
gi|19                         :                                                                                                                          aagtaagtaagtagtaagtaagtgagtcagta-GTGACATGTGCATCGACATATCAA-TAAA------------ACTCA----A------TAAA-CAAT---------A-AAAG--AGA--C--TGAAG--CG-----TCCGGCCAA-ATGAACCTATAAGTCACT----ATGGACAATACAAAAtaagcatgtttgcaattaaacatcatcaaacaatccaattgaatggttgcatgcatgttttaaaa
gi|2                          :                                                                                                             caaaTTCAAACA--T---TAAGATAAG---ATATTGTTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TAAGC----------TATACA--T-A------TATA-CAACT---G--ACA-CACT--TAT--T--TG--G--CA-----CCCGGTTCA-TTGGGCCTATATGTCAAT----A-GGATAAT-ATAGAAAG---TAAT----TATAT------ACA--AAATTCGTATATAC-TG-TATAATAT-----A-CA------GGTTAACTATGACATACA-------C---AGT--CCTGACAAAATATAAGC-AAAATATTCCCGGAGTATCCAAT-ATTGTCAGTATTGAGTCTAGTTATGATAGA--TATGATATAAATACA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGAGGTATTAAGTCTGACATAATAGTTGGCGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGATAAGAAACTTTGCAAGTTGTCTTGAA---TCCGCTGACATGATATGTGGA---AGTCG--CTGGTTTATAT---ACATGTAA---GC--ATTA--TCTACAAA-TAAATCTCTGAAATT-GTTTTCTCGCAG-GTCATTATA-------CAGTTTACACTG------AAAT-AGAAAGTGT-T-------TCTCATTTTCTA-CTGAGTTTAACTGACAAAGTCTACAAAGTCTCTAATTAGG--TTGTTCCCATATAAATCTTCCGGTTTCAATTC-TCAGT-GGTAAGATACCAGTTC-----TGACAAAATACAGAGCATGCAT---TCTTAT-TTA-AGTTCATCATAACGTAGTCCTCGCATTTGATGTGTTTCTTAAACAG--GCGATAT--GTTCTCTGATTTGATATACTT------TGA-ACGTCTTCTGACC----AGACATTAGAATT--ATA----ATT-CACTAG--T---A-ATCCATGTGCTTATGATGAGTCAATTAT-TGTTCTGTTTTC---GTAATTTG-CGGAT---TACCCCAGCGCAGACATTAC-GGG-TTTAAAATCAT-GTG-ACCAATTATTTTTGCA-C--ATTAAATAATCG-AAATTAAA--CAC-CTTTTTCGT-AATCAGTCTGTCATCCATCAAAACCACTTTGTGACC-CATATGCAACATGTTTCCCCATCGTCTGCAAACACTTGGTATCCACCCGGTATCCCCAATCATCTCGAAAATTGGCGT------GAAACGATGAAcatcatatttaaaacatgacatcatcggttttgacgatattaaattctatttaatatacaaaaatgttatgctatatgtaaacgtgtcttttaacaaataatactgataactttaattatactgtt
gi|20                         :                                                                                        caattatacattctattttttatgtacgtcacatattcttatttgttaaaattattatTTATTATA-GTGACATGTGCA---A-AT-GCAT-AACAT----------TATATA--T-AAA----TATG-CAATT---A--ACACAGAA--CA-------------CA-----CCCGGCCCA-ATGGACCTTTAAGTCACC----ta
gi|21                         :                                                                                                                             GATAAGATCAA---TTATTGTTTATTATT-GTGACATGTGCAC--ACAT-TCAT-CATGTTATATATATATATATA--T-A------TATA-CAATT---G--ACA-AAAG--TTT--A--TG--G--CA--------------------CTTATATGTCGCC----A-AGATAAT-CAAGAAAGTTATAAT----TAT---------------ATTC-TAA------GGTATTATTT-----A-CAGTT--A--TTAACTtatatgaatgtacatacacatataccctaatgtactatatattaagcatgcttgaaataatacatgtttgattacaattcgatataacagtttgtgcatttcgtctgtttgaaactggtt
gi|22                         :                                                                                                                            AGATATGATAAG---ATATTGTTTATCATT-GTGACATATGCAT--ACAT-TCAT-TATTT----------TATGCG--T-ATATTATTATA-CAGTT---G--ACA-AAAT--TAT--A--TG--G--TA-----ACTGGCCCATTTGGGTTTATATGTCACC----A-GGGTCAT-CAAGAAAC---TAAG----TA
gi|23                         :                                                                                                                                            TATTGTTTATCATT-GTAACAT-------------TCAC-TATGT----------TAAACA--T-AATTA--TATA-CAATT---G--ACA-AAAT--TAT--A--TG--G--CA-----TCCGA-CCA-TTGGGCCTTTATGCCACC----A-GCATATG-TAAAAGGA---CATT----TATAT------
gi|24                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GCCAAGAAAGTATCATAAAGCACGATGTTGAATGTTGTGTAT---TGT---CTGACGCTGTATGAAACCTTATACGGCAGAACAACGGTCTAATATTGGAATGAGGCCTGAATGAAATA-TATTATTTGAA---TCCAATGTCTTTgaatatcccctttcaatattg
gi|25                         :                                                                                                                                       t---ATATT--TTATTAAT-GTGACATGTGCATG-ATAT-ACAT-GACAA----------TA-ACA--C-G-------ATA-CAAAT---A--AGA-AAATAATAA--A--TA--T--CA-----CCTGGTCCA-CTGCGCTTTTCGGTCAT---------ATAAT-TATGGAA----TAGT----T
gi|3                          :                                                                                                                                            gtaagtaaatacTT-GTGACATGTGCGT--ACAT-TTAT-TAAGT----------TATACA--T-A------TACA-CAATT---G--ACA-AAAT--TAT--T--TG--G--CA-----CCCGGCACA-TTGGGCCTATATGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--AAATTCGTAAATAC-T-CTATTATAT-----A-CA--T--AGGTTAACTATGACGTACA-------A---AAT--CCTGACAAAATATTAGT-AAAATATTCCCTGTGTATCCAAT-ATTGTCAGCATGGAGTATAGT-ATGATAGA--TATGTTATACATATA-ATAGGAAA-ACAGGCAATATATCATAAATCAATACTACATGAGGTATTA-------------------CGAAAACAAGGTATTTCTTCTTTTTAAGAAAACACAGACAAGAAACTTTGCAAGTTGTCTTAGA---TGCGCTGATATGATATGTGCT---AGTCG--TTGGTTTACAT---GTATGTAA---AC--ATTA--TTTACAAA-TAAATCTCTGGAATT-GTTTTCTCGCAG-GTCATTACA-------CAGTTAACACTG------AAAT-AGAAAGTGT-T-------T-TCATCTTCTA-CTGAATTTGACTGACAAAGTCTACAAAGTCACTGATCAGG--TTGCTCCCCAACATACCTTCCGGTTTCAATTC-TGAGT-GGCAAGATACTAGTTCTAAATTGACACAAAACAGAGCGTCCAT---TCTTGT-TTA-AGTTCATCATAATGTAATCCTCACATTTAAAATTTTCCTTAAACAG--GCGATGC--GTTCTCAGTTTTGATATACTT------TGA-ACGTCTTCTGACC----AGACATTAGAATA--ATA----GTT-TACTAG--T---A-ATCCATGTGCTT-------GTTAATAAT-TGTTCTGTTTTC---GTGATTTG-CGGAT---AACCCCAGCATAGACATAAC-ATG-TTTAATATCAT-GTG-ACCAATTATTTTTGCA-C--TTTAAATAGTCG-GAATTAAA--CACTTTTTTT-GT-AATCCATCTGTACTCAATCAAAATCACTCTATTTGA-CATACGCAACATGTTTCCCCATCGTCTGTAAACACTTGGTATCCACCCGGTGTCCCCAACCATCGCGAGAATTGGCGT------GAAGCGATGAACACCAAGAAAGTATCTCATGGCTCTATTCTGAACATTAT---C---TATATGTTGATACTTCTTGATACACCACACTGAGGAGGAATAGTCGAGGATGGGCACAATACA
gi|30                         :                                                                                                                                                                                     ATGT----------TATACA--TTA------TGTA-CAATT---T--ACA-AAAT--TGT--A--TG--G--CA-----CCCAGCCCA-TTGGGCCTCTATGTCACC----
gi|31                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                acaacaatacttacaacattgtgtttataaatggtaaaaaatgctttgCATCAACAATATATCAGGTATTAAGTCTGATATAATAGTTAACGAAAACAAGACATTTCTTCTTTTTAAGAAAGCAGAGACAAGAAAC
gi|32                         :                                                                                                                                                                                                                                                                                                                                                                                                       GTACA-------A---AAT--CCTGATAAAATATTAGT-AAAATATTCACTGTGTATTTAAT-ATTGTCAGTATGGACGGTAATTTTGTTAAG--AATGTTATAAATACA-ATAGAAgtgtttaattgtt
gi|34                         :                                                                                                                                              TTGTGTATTAAA-GTGACATGTG--T--GCA----AC-AAAAT----------TATA-G--T-A------ATTA-C-ATT-------CA-AATT--TATCAA--TG--GCACA-----CCCGACCAG-ATGGACCTAAAT
gi|35                         :                                                                                                                                                                 TGTGCAT--ACA----ATGTATAT----------TACAAA--T-AGTTA--TATA-CAAAA---A--AAA-AAA------------A--G--C---------GGCCCA-TTGGACCTATAAGTCACC----c
gi|37                         :                                                                                                                                                 TTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TAAGT----------TATACAATT-G------TAT--TTATT---G----A-AAAT--CAT--taaactattaggtat
gi|38                         :                                                                                                                                                                                                                                                        --G--CA-----CCCGGCCCA-TTGGACCTATAAGTCACC----t
gi|39                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          aaaaaacaaTC-TTAGA-GGTAGAATACCACATCTAAATTGGGCCAACAATGAACGTtaaactgttaggtataaactg
gi|4                          :                                                                                                                                                GTTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TAAGT----------TATACA--T-A------TATA-CAATT---A--ACA-AAAT--TAT--T--TG--G--CA-----CCCGGCCCA-TTGGGCCTATATGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--AAATTCGTAAATAC-T-CTATTATAT-----A-CA--T--AAGTTAAATATGACGTACA-------A---AAT--CCTGACAAAATATTAGT-AAAATATTCACTGAGTATCCAGT-ATTGTCAGTATGGAGTGTA----------------GTTATAAATATA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGATGTATTAAGTTTGACATAATATTTTACGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGAGAAGAAACTTTGCAAGTTGTCTTGGA---TGCGCTGATATGATATATGCA---AGTCG--TTAGTTTATAT---GCTTGTAA---GC--ATTA--TTTACAAA-TAAATCTCTGAAATT-GTTTTCTTGCAG-GTCATTATA-------CAG-------T
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TCCTTAAAAAG--GCGATAT--GTTCTCAGTTTTAATATTCTT------TGA-ACGTCTTCTGACC----AGACATTAGAATA--ATA----GTT-TACTAG--T---A-ATCCATGTGCTTGTGATAAGTCAATAAT-TGTTCTGTTTTC---GTAATTTG-CGGAT---AACCCTAGCATAGACATAAC-GTG-TTTAATATCAT-GTG-ACCAATTATTTTTGCA-C--ATTAAATAGTCG-GAATTTAA--CACTTTTTT--GT-AATCCGTCTGTCATCCATCAAAATCACTCTGTTCCA-CATACGCAACATGTTTtcacactgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccttaaaaaggcgatatgttctcagttttaatattctttgaacgtcttctgaccagacattagaataatagtttactagtaatccatgtgcttgtgataagtcaataattgttctgttttcgtaatttgcggataaccctagcatagacataacgtgtttaatatcatgtgaccaattatttttgcacattaaatagtcggaatttaacacttttttgtaatccgtctgtcatccatcaaaatcactctgttccacatacgcaacatgttt
gi|5                          :                                                                                                      gtttattattgtgacatgtgcatacattcattaagttatacatatatacaattaacaaaattatttggcacccggcccattgggcctatatgtcaccaggataatcaagaaagtaattatatacaaaattcgtaaatactctattatatacataagttaaatatgacgtacaaaatcctgacaaaatattagtaaaatattcactgagtatccagtattgtcagtatggagtgtagttataaatataataggaaaacaggcaatatatcatacatcaacaatacatgatgtattaagtttgacataatattttacgaaaacaagatatttcttctttttaagaaagcacagagaagaaactttgcaagttgtcttggatgcgctgatatgatatatgcaagtcgttagtttatatgcttgtaagcattatttacaaataaatctctgaaattgttttcttgcaggtcattatacagttcacactgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAT-GGAAAGTGTGTGACAAGATTTCATCTTCAATCTGAAGTAGATT-ACAAAGTGTG---AGTCTTTGCTCTCG--TTGCTCACCGACATATCGTCGCGTTTCAACTC-TTTGA-GGTAGAATACCACATCTAAATTGGGTCAACAATGAACGTTCCTG--T-TTGT-TAA-ATTTTAAAACCATATATTGTTCAAGTTCAAATTTATTTTTAAA--A--GTAACATAAGTCTGCAATTTAGGCATC--T------TGCTACTTCTACCTTCC----AGATATTTGAGTA--GTATTTCGTTATCTTAG--TCTTA-A-CAATGT-CT----ATGTGT--ATAAC-AGTTTTGTTTTCAAAATAGTTCATCAGATTTAAAT-------TGGACAAAACTGT--TTTCAGATCATTGT--ACCAATTATGTTTACA-C--TTGTTATAGTTC-ATGTTAAAGACACGCCTGGT--T-AGCCTAT-TGTCATCAAACAATACAAGTCTGTTCCAGTAT-CGTATCATTGCTACCCAACGGCGATAACAACTAGGAAGCCATCCCGCACATGCGGTGATTGCAAGTTTCGGGGC------AAATCTGTGTACGCCAAGAAAGTACCGTAAAGCACGATTCTGTACATTGT---C----------TGGTAATGTTTGAATCCCCATACTGATGCACAGTAGTCCAATATTGGTACAAAACACGATTCAAATAGTCTT-TTGGTAG--TTTAATATCTTTTCCAAG-GTATAAGTCATTTAT
gi|6                          :                                                                                                            ttattatagtgatatgtgtacAGATAAG---ATACTGTTTATTATT-GTGACATGCG-----ACAT-TCAT-TATGT----------TGTACA--T-A------TATA-CAACT---G--ATA-AA----TAT--A--TG--G--CA-----CCCAGCCCA-TTGGGCTAATATGCCACC----A-GATTAAT-CAAGAAAG---TAAT----TATAT------AGA--TGATTCGTGAATAC-TGCTATGATAT-----A-CA--T--ATGTTAACTTTTAAGTACATGTACGTA---AAT--GCTGACAAAATATTAGC-AAAATATT-TCTGTGTATTTAAT-ATTGGTAGTATGGACGATAGTTATTGTA-ATTTTTTTTATAAATATA-ATAAGAAT-ATTGACAATAGATCATACATCAACAAAACATGAACTATAAAGTCTGACGTAATAGTTTACAAAAACATCACATTTCTCCTTTTTATGAAAGCACAGACAAACAA------AGGTTTTCTCGGA---TGCGCTGATATGATATGTGAA---AGTCG--GT-GTTTATAT---GCATGTTA---GCAAATTAATCTTA-AAA-T--ATCTAT---ATA-GTTt
gi|7                          :                                                                                                                     tATA---AGAGAAGAGAA----ATATTGTTTA-TATTCGT--TATGT-TAT--ACAT-AC----AAAT----------TAT-CA--T-A------CAT---AATT---G--ACA-AAAT--TAT--A--TG--G--CA-----CCCGGACCATTTGAATTTATATGCCACC----A-GGTTATT-CAAGAGAG---TAATAAACTATAT------ATA--CCATTCGTAAATAC-TGTTAGTATATAGTTAA-CT--T--A-TTTAACTATGAAGTTCA-------A---ACT--CCTGACTAAGTATTTGCAAAAATATTCCCTGTGTATTTGAC-ATTGTTTGTATGAACGGTAATTATGGTAAA--TTTGTTATAAATACA-ATAAGACT-ACTTGCAATAGTTCATACATCAACAATACA----GTA-------TGACATAATAGTTGACGAAGACAAGATATTACATCTTTTTAAGAAAGCACAGACAAGACATTTTGCAAGTTTTCTTGGA---TGCGCCGATATAATCTGTGAG---ACTC---CTGGTTTATATGTAGCATGTTA---GC--AATA--TCTACAAA-TAAATCTCTGAAATA-GTTTTCTCGCAG-GCCATTATA-------CAGTTCACACTG------AAAT-AGGAAGCGC-T-------TCGTATCTTCggcaaacgccattttctgtttcgttgactgcaattagtatttgccttactaagttctatatctgaccctgaaaagtgcaca
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TACTTCTTCTTCTCATGTAAGCATATACAATATATTTAGCTACTTTTCTGGGAACGTGTG-TGACAAGAAATACACATTTAGCCATACTA-TCCATAC----CAT-TAAACTGC--AT-A--TTTGAAAA-TTGTTCATTCAAAAT-GTCTGCT-GTAATATCATTGTA-------AAA-------TGTACATTAGATCAAAAAATGA-T-------TTTCATCTTCAATCTGAAGTAGATT-ACAAATTGTGCAGAGTCTTTGCTCTCG--CGGCTCACCGACATATCGTCCCGTTTCTATTC-TTAGT-GGTAA--------------ATTGGGCCAACAATGAACGTTCCTG--T-TTGC-TCA-AATTTAAAAGCACATATTGTTCGAATTCAAATTTATCTTTAAA-AGTTAC-ATAA--GTCCGTAATTTAGGCACTCTTACTACATAA-AC--CTTC----C----AGATATTTGAGTA--GTA----TTC-CGTTAGCTT---A-GTCTAAACAATTTTTATGTGT--ATAAC-AGTTTTGTTTTCAAAATAGTTTATCAGAT------TCGAAT-TGGACATAAC--TGTTTTCAGATCAC-TAC-ACCAATTACTTTttgtactcaaatatcagacaa
gi|9                          :                                                                                                                    AAATAAGTAAGTAAG-TAAGTAAATATT--TTATTAAA-GTGACATGTGCAT--ACA----ATATATGT----------TACAAA--T-AGTTG--TATA-CAA--------ACA-AAAA--CA-------A--G--CA-----CCCGGCCCA-TTGGACCTATAAGTCACC----
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): ATTTGTAAGTAAGTATGTAAGTAAGTTTTTATTATAAAAACGTGTGTAAATTTATAACATAATATGTTAATATGCAGTTTTTACAGAACACAATCGGCCCAATGGACCTAGTCACATATATAAATAT
Unaligned ( gi|27 ): AATACTTCTTCATGTGTTAATAATATTTAAAAAAAATATACAAATTGTTTAAAAAATGTGTCATGTGATAACAATATTGGATGTATTTTAAGTACGTTAAAAGGACGTGGCTAACTGTTTTA
Unaligned ( gi|28 ): TAAGTATGTAGATATTGACATGTGCATGACAATACAATAACATGCAAAATGATATGTGGAGCACTAAGGCCTAACAGGCATATAATAATTCGCTACCAAAAAACAAAAATGTCATTCCAT
Unaligned ( gi|29 ): TAAGGTGACAGGTACACATGTAACATGACATATATTTGGAACACACACACGATGGAACCATAACAGATACTATCTTAGACAAGCATCATTAAATCATTCATTATGGTTAGACACTAAA
Unaligned ( gi|33 ): ACCTTCCAGATATTTGAGTAATAGTCCGTTATCTTGGTCTTAACGATATCTATGTGTATAACAGATTTGTTTTCAAAAAAGTTTATCAGATT
Unaligned ( gi|36 ): GTCACTTCCAATAAATAGAAGTAATATGAAATTCATATGATAATAATCAACATAATAGACTATTGTAGGTACACATTTGCAT






Alignments
lowQualScore                  :                                                                                                                         111            111                                                                     111111                       11111111111                                                                                          111               11          11111                          11111111111                                                                           1111                                                                                                                                                                                                                                                                           22222                      1111111            1                                                                                                                            222                                                      1  11                              111111                 1111                  2222   1         111          11  3333      11                  222       111     2222222222222          11111          111111                                            11                                                                                                                            222222                                                   222222222222                                                                   1  1        222            222   1    11         
lowQualScore                  :                                                                                                                         111       0    000               2          1  44   333   3  1 88888888888      6666 1 555555    1     555555   1   00000000000  22222  44444         22 1         1      555555      44        444    5555     888888   000             3 33        3 22222  55555 3           1     33333333333   55                     4         1         4                1           1111 2             4   0    5          1                      0    0 0  1             3                                                                 888                   1 888     66  0        888        777  66  1 66        4  0    0      55            5            33333 5                  5 6666666 4        1 1            7            0        1  1  77      0  2                 0    5 1  88     4      55  0       22   0 22  1       222 8    5   5    7777 1   1  1 1   333      1  3        1  55  6   888    1      1     1   666666   5  4     0 5  2222       1     77   0000   1      77 000 5 1      22  1111   3  55     5    1       888       444     4444444444444          11111     1    111111                6 99  3         6           22        6       1                            6   3                                                     3                    333333   1     1                3  1   1               0 555555555555              1           1 0         1     1       1      1 4 1 1 0  0    0 1 555      1     000   5    88  22     
lowQualScore                  :                                                                                                                         ...       .    ...               .          .  ..   ...   .  . ...........      .... . ......    .     ......   .   ...........  .....  .....         .. .         .      ......      ..        ...    ....     ......   ...             . ..        . .....  ..... .           .     ...........   ..                     .         .         .                .           .... .             .   .    .          .                      .    . .  .             .                                                                 ...                   . ...     ..  .        ...        ...  ..  . ..        .  .    .      ..            .            ..... .                  . ....... .        . .            .            .        .  .  ..      .  .                 .    . .  ..     .      ..  .       ..   . ..  .       ... .    .   .    .... .   .  . .   ...      .  .        .  ..  .   ...    .      .     .   ......   .  .     . .  ....       .     ..   ....   .      .. ... . .      ..  ....   .  ..     .    .       ...       ...     .............          .....     .    ......                . ..  .         .           ..        .       .                            .   .                                                     .                    ......   .     .                .  .   .               . ............              .           . .         .     .       .      . . . . .  .    . . ...      .     ...   .    ..  ..     
lowQualScore                  :                                                                                                                         888       8    000               0          5  55   777   8  0 77777777777      4444 8 555555    8     444444   8   88888888888  55555  33333         11 7         0      555555      22        777    7777     888888   222             6 99        6 77777  55555 2           9     44444444444   55                     4         0         4                9           2222 3             4   2    7          3                      2    4 1  4             2                                                                 888                   0 888     99  2        888        888  11  9 11        4  8    1      44            0            00000 0                  0 2222222 2        0 4            9            3        6  0  99      7  7                 8    0 0  66     2      22  1       00   2 00  1       999 9    7   7    1111 0   4  0 0   888      0  7        4  77  6   444    3      0     0   444444   7  3     1 1  1111       0     99   0000   4      99 000 7 4      33  3333   0  00     7    7       444       000     7777777777777          88888     0    444444                7 22  2         7           77        7       0                            7   2                                                     8                    000000   0     4                2  4   4               8 000000000000              4           0 6         0     0       0      0 2 0 2 0  0    2 0 000      0     555   5    55  00     
consensus                     :                                                NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCAAATA--TAGATAAGATAAG---ATATTGTTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TANGT----------TATACA----T-A------TATA-CAATT---G--ACA-AAAT--TAT--A--TG--G--CA-----CCCGGCCCA-TT-GGGCCTATANGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--NAATTCGTAAATAC-TGCTATTATAT-A-----CA--T--AGGTTAACTATGACGTACA-------A---AAT--CCTGACAAAATATTAGTAAAA-TATTCCCTGNGTATCCAAT-ATTGTCAGTATGGAGTGTAGTTATGATAGA--TATGTTATAAATACA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGAGGTATTAAGTCTGACATAATAGTTTACGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGACAAGAAACTTTGCAAGTTGTCTTGGA---TGCGCTGATATGATATGTGNA---AGTCG--CTGGTTTATAT---GCATGTAA---GC--ATTA--TTTACAAA-TAAATCTCTGAAATN-GTTTTCTCGCAG-GTCATTATACAG-T-TCA-CACTGAAATAGAAAGTGT-T-------TCTCATCTTCNA-CTGAATTTGACTGACAAAGTCTACAAAGTCTCTGATCNGG--TTGCTCCCCGACATACCTTCCGGTTTCAATTC-TNAGT-GGTAAGATACCACNTCTAAATTGGNNCAACANNGAGCGTTCATG--TCTTGT-TTA-AGTTTATCANAACGTANTNCTCGCGTTCAAANTTTTCCTTAAACAG--GCGATAT--GTCCTCAGTTTNGACATNCTT------TGA-ACGTCTTCTGACC----AGACATTNGAGTA--ATA----GTT-TACTAG--T---A-ATCCATGTG-CTT-TGATGNGTCAATAAC-TGTTCTGTTTTCAAAGTAGTTT-G-CGGAT---AACCCCAGCATAGACATAAC-GTG-TTTAANATCAC-GTG-ACCAATTATTTTTGCA-C--TTTAAATAGTCG-GAATTAAACAC-TTTTTTTGT-AATCCGTCTGTCATCCATCAAAATCACTCTGTTCCA-CATACGCAACATGTTTCCCCATCGTCTGTAAACACTTGGTATCCACCCGGTATCCCCAATCATCGCGAGAATTGGCGT------GAANCGATGAACGCCAAGAAAGTATCGTATAGCTCGATTCTGAACGTTGTC---TGTA-TGT-TGATACTGTTTGAATCCCCATACTGANGAACAATAGTCNAGGATNGGCACAANACACGANTCGNATA-GT-TTTTCGNAG--TTTAATNTCTTTTCCAAGAGTATAAGTNNTTTAT
Reference ( family-717 )      :                                                NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCAAATA--TAGATAAGATAAG---ATATTGTTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TANGT----------TATACA----T-A------TATA-CAATT---G--ACA-AAAT--TAT--N--TG--G--CA-----CCCGGCCCA-TT-GGGCCTATANGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--NAATTCGTAAATAC-TGCTATTATAT-A-----CA--T--AGGTTAACTATGACGTACA-------A---AAT--CCTGACAAAATATTAGTAAAA-TATTCCCTGNGTATCCAAT-ATTGTCAGTATGGAGTGTAGTTATGATAGA--TATGTTATAAATACA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGAGGTATTAAGTCTGACATAATAGTTTACGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGACAAGAAACTTTGCAAGTTGTCTTGGA---TGCGCTGATATGATATGTGNA---AGTCG--CTGGTTTATAT---GCATGTAA---GC--ATTA--TTTACAAA-TAAATCTCTGAAATN-GTTTTCTCGCAG-GTCATTATACAG-T-T-A-CACTGAAATAGAAAGTGT-T-------TCTCATCTTCNA-CTGAATTTGACTGACAAAGTCTACAAAGTCTCTGATCNGG--TTGCTCCCCGACATACCTTCCGGTTTCAATTC-TNAGT-GGTAAGATACCACNTCTAAATTGGNNCAACANNGAGCGTTCATG--TCTTGT-TTA-AGTTTATCANAACGTANTNCTCGCGTTCAAANTTTTCCTTAAACAG--GCGATAT--GTCCTCAGTTTNGACATNCTT------TGA-ACGTCTTCTGACC----AGACATTNGAGTA--ATA----GTT-TACTAG--T---A-ATCCATGTG-CTT-TGATGNGTCAATAAC-TGTTCTGTTTTCAAAGTAGTTT-G-CGGAT---AACCCCAGCATAGACATAAC-GTG-TTTAANATCAC-GTG-ACCAATTATTTTTGCA-C--TTTAAATAGTCG-GAATTAAACAC-TTTTTTTGT-AATCCGTCTGTCATCCATCAAAATCACTCTGTTCCA-CATACGCAACATGTTTCCCCATCGTCTGTAAACACTTGGTATCCACCCGGTATCCCCAATCATCGCGAGAATTGGCGT------GAANCGATGAACGCCAAGAAAGTATCGTATAGCTCGATTCTGAACGTTGTC---TGTA-TGT-TGATACTGTTTGAATCCCCATACTGANGAACAATAGTCNAGGATNGGCACAANACACGANTCGNATA-GT-TTTTCGNAG--TTTAATNTCTTTTCCAAGAGTATAAGTNNTTTAT
gi|1                          :                                                                                                                 TCCAAATA--TAGATAAGATTAG---ATATTGTTTATTATT-GTGACATGTGCAT--ACTT-TCTT-CAAGT----------TATACA----T-A------GATA-CAATT---G--ACA-CAAT--TAT--T--TG--G--CA-----CCAGACCCT-TT-GGGCCTATATGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--AAATTCGTAAATAC-T-TTATTATAT-A-----CA--T--TGGTTAACTATGACGTACA-------A---CAT--CCTGACAAAATATTGGTAAAA-TGTTCCCTGAGTATCCAAT-ATTGTCAGTATGGAGTGTAGTTATGATAAG--TTTGTTATAAATATA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGAGGTATTAAGTATGACATAATAGTTTACGAAAACAAGATATTTCTTCTTTTTAAGGAAGCACAGACAAGAAACTTTGCAAGTTGTCTTGGA---TGCGCTGATATGATAGGTGGA---AGTCG--CTGGTTTATAT---GAATGTAA---GC--ATTA--TTTACAAA-TAATTCTCTGAAATA-GTTTTCTCGCAG-GTTATTATACAG----------TGAAATAGAAAGTGT-T-------TTTCATCTTCTA-CTAAATTTGACTGACAAAGTCTACAAAGTCTCTGATCAGG--TTGCTCCCCAACATACCTTCCGGTTTCAATTC-TGAGT-GGTAAGATACCAGTTCTGAATTGACACAATACAGAGCGTTCA----TTTTGT-TTA-AGTTTATCATAACATAGTCCTCACATTTAAATTTTTCCTTAAACAG--GCGATAT--ATTCTCAGTTTTGATATACTT------TGA-ACGTCTTCTGACC----AGACATTAGAATA--ATA----GTT-TACTAG--T---A-ATCCATGTG-CTTGTGATAAGTCAATGAT-TGTTCTGTTTTC---GTAATTT-G-CAGAT---AACCCCAGCATACACATAAC-GTG-TTTAATATCAT-GTG-ACTAATTATTTTTGTA-T--TTTAAAAAGTCG-AAAGTAAACACTTTTTTTTGT-AATCCGCCTGTCATCCATCAAAATCACTTTGTTCCA-CATACGCAACATGTTTCCCCATCGTCTGTAAACACTTGGTATCCACCCGATGTCCCCAATCATCGCAAGAATTGGCGT------GAAGAGATGAACACCAATACAGTATCTTATGGCTCTTTTCTGAACATTATC---TTTA-TGT-TGATACTTCTTGAATCTCCACACTGAGGAGCAATAGTCAAGGATAGGCACAACACATGATGTGTACA-GT-TTTTCGTAGGATTTGAACTCTTT---AAGAGTAT--GTATTTTAT
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      tgattatgtctattgattatgtcattaacaagcgatcttgctttctgcctaaatggtcatccgtgTACACATCAC-ATG-CATAATGTCAA-AAG-TCCAGTTATTTGTACAGCGGTT---ATAATCATGCAT-AAATAC-TTTCTTTGTCAGTCTAT-TATTATCCATGATAATAAGTCCATTCCA-AAACCGTAACATCCATGTCCATCGTCTGTACACGCTTGGTATCCAGCCAGTATCACC------CACGAGAGCTGATGTCGGCCCAAACCTACGTACGCCAAGGAAATAACGCATAGCTCGATTTTGGACGTTGTCAATCGT----T-TGAAACTGTCTATATCCCCATACTGATGCACAGTAGTCTAGGATCGGCACAACACACGAATTGTAAA-GT-TTTTCAAActataattccaccaagtgcacggcctgctgctttcccgagcgattcactagtgtacattaagtggttcttttcatggaaaataacccctagatatttgtata
gi|11                         :                                                                                                                 cgagttTA--TAGATGAGATAAG---ATATTGTTTATCATT-GTGACATGTGCAT--ACAT-TCAT-TAAGT----------TATACA----T-A------TATA-CAATT---G--ACA-AAAT--CAT--T--TG--G--CA-----CCCGGCCAT-TT-CGGCCTATATGTCACC----A-GGATAAT----GAAAG---TAAT----TATAT------ACA--CAATTCGTAAATAC-T-CTATTATAT-A-----CA--T--AGGTTAACTATGATGTACA-------A---AAT--CCTGACAAAATATTGGTAAAA-TATTCCCTGAGTATCCAAT-ATTGTCAGTATGGAGTGTAGTTATGATAGA--TATGTTATAAATATATATAcgaacggaggatgtatttctttgttacttcttt
gi|12                         :                                                                                                                    tgtaaaagtGATAAGATACG---ATATTGTTTATTATT-GTGACATGTGCAT--ACAT-TAAT-TATGT----------CGTACA----T-A------TATA-CAATT---G--ACA-AAGT--TAT--T--TG--A--CA-----CCCTGCCCA-TT-GGTCCAGTTTGTCATC----A-GGTTAAA-CAAGAAAG---TATT----TATAT------ACA--CAGTTCACAAGTAC-TGCTATTGTAT-A-----CA--T--AGGCTAACTATGAAGCATA-------A---AAT--GCTGACAAAATATTAGTAAAA-TATTCCCTGTGTGTATAATAATTTT---TAT--AGT-TCG-TGTGAGCGAT-TATGTTATAAATACA-CTA--AAATGCAGGCAGTAGATCAAACCTTATCAATACATGAAGTATTAAATCTGACATAATAATGTGCGAAAACAtatccaatcatggttccaatatttaacatattaaactaatttgataaaaatatgataatt
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GTTTCTACTC-TTAA--ACTAGAATACCACCTCTAAACTGGGTCAACAACAAACGTTCATGTTTCTTCTCTTAGAGGT----AGAATACATTGTTCAAGTTCAAAA-----AGTGAAAAGTTAC-ATAA--ATCCGCAATTTAGACACTCAT------TTA-----CTTCTG-CCTTCAAGTTGTTTGAGTAGCATATC--GTTATCTTAG--T---ATAGTGATGT--CT----ATGTGT--ATAACATATT-TGTTTTCAAAATAGTTTAA-CAGATTGAAAT-------TGGACGTGAC--TGTTTTCAAATCAC--TGCACCAATTATTTT
gi|14                         :                                                                                                                            ctATAAG-TAAGT--AAATAGTTTATAATA-GTGGCATGTGCAT--GG----CAG-TACA------------ATA-A----T-A------TATG-CA-TT---G---CA-AAAT--GAT--AAATA--G--TAGATGACCCGGCCCA-GT-GGGCCTACAAGTCAC
gi|14                         :                                                                                                                                                                                                                                                                A-----CCCGGCCCA-GT-GGGCCTATAAGTCACT----GCGAATAA------ATAG---AAGT----CATAT------GCA--tgccaataaatagaagtggtatgcaatagtagatgacccggcccagtgggcctataagtcactgcgaataaatagaagtcatatgcaatttcatttgataataagcaatgggacataaataggataatgtaggtaaactttcaaaggcacaaatgtaggtaaa
gi|15                         : ataagtaagtaaatagtttataatagtggcatgtgcatggcagtacaataatatatgcattgcaaaatgataaatagtagatgacccggcccagtgggcctacaagtcactgccaataaatagaagtggtatgcaatagtagatgTTATTAAA-GTGACATGTG--T--ACAT-GTAA-CATG--------------ACA----T-A------TATA-TAATTTTAA--ACA-ACA------------------CA-----CCCGGCCCA-AT-GGACCTATAAGTCACC-------TATA---CAAATAAA---CAAT----TATATTATTTCACATGAAATT-----ATGCTTGTTATTAAAC-AC----CA--TAAAAATGAATAAT-ATGTACA-------AGGTAATTACATAACAACATATTAATatttcatttgataataagcaatgggacataaataggataatgtaggtaaactttcaaaggcacaaatgtaggtaaa
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         aTTTTTTCTTTTTAAGAAAGCACAGACAAGATACTTTGCAAGATGTCTTGGA---TGCGCTGATATGATATGTGCA---AGTCG--TTGATTTATAT---GCTTGTAA---GC--ATTA--TTTACAAA--AAATCTCTGAAATT-GTTTTCTCGCAG-GTCATTATACAG-T-TCA-CACTGAAATAGAAAGTGT-T-------TTTCATCTACTA-CTGAATTTGACTGACAAAGTCTACAAAGTCTCTGATCAAG--TTGCTCCCCAACATACCTTCCGGTTTCAATTtacgattgtttgaaaagtcattggttatataatgtatttcttcttctcatgtaagccttaacaatatatttagctacttttct
gi|17                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TAA---AC--AT-A--TCAGCAAAGTA--TCT-TGAAACACATTTTCTCTGAT-ATTATTGTAAAG-T-CCA-CAATGTAACAGAAAATGT-T-------TCTCGTCTTCAA-CGGATCCTGTGTCACAGAATCTTCATAGTCTCTGTTCTGGAGTT--TCACCAATATACCTTCCAGTCTCTATTCTTAAATAGGTAAAATGCCACACCTAAATTGACACATAATAGATCTCTCGT---TTTTCT-TTA-AATTGGTTACACCATACT
gi|18                         :                                                                                                                                                      TAGT-GGGACATCTG--T--ACAT-GTAT-CATGA----------CATACA----T-A------TACAGTATTT---GTAACA-ACA------------------CG-----CCGGGCCGA-GT-GGAGCTATAAGTCACCTATAA-AGATAA------ATAG---TTAT----TAT-T------ACAT-TAAT--GTAATTA-----TATTATTTGA-----CA--T--Ag
gi|19                         :                                                                                                                          aagtaagtaagtagtaagtaagtgagtcagta-GTGACATGTGCATCGACATATCAA-TAAA------------ACTCA------A------TAAA-CAAT---------A-AAAG--AGA--C--TGAAG--CG-----TCCGGCCAA-AT-GAACCTATAAGTCACT----ATGGACAATACAAAAtaagcatgtttgcaattaaacatcatcaaacaatccaattgaatggttgcatgcatgttttaaaa
gi|2                          :                                                                                                             caaaTTCAAACA--T---TAAGATAAG---ATATTGTTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TAAGC----------TATACA----T-A------TATA-CAACT---G--ACA-CACT--TAT--T--TG--G--CA-----CCCGGTTCA-TT-GGGCCTATATGTCAAT----A-GGATAAT-ATAGAAAG---TAAT----TATAT------ACA--AAATTCGTATATAC-TG-TATAATAT-A-----CA------GGTTAACTATGACATACA-------C---AGT--CCTGACAAAATATAAGCAAAA-TATTCCCGGAGTATCCAAT-ATTGTCAGTATTGAGTCTAGTTATGATAGA--TATGATATAAATACA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGAGGTATTAAGTCTGACATAATAGTTGGCGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGATAAGAAACTTTGCAAGTTGTCTTGAA---TCCGCTGACATGATATGTGGA---AGTCG--CTGGTTTATAT---ACATGTAA---GC--ATTA--TCTACAAA-TAAATCTCTGAAATT-GTTTTCTCGCAG-GTCATTATACAGTT-T-A-CACTGAAATAGAAAGTGT-T-------TCTCATTTTCTA-CTGAGTTTAACTGACAAAGTCTACAAAGTCTCTAATTAGG--TTGTTCCCATATAAATCTTCCGGTTTCAATTC-TCAGT-GGTAAGATACCAGTTC-----TGACAAAATACAGAGCATGCAT---TCTTAT-TTA-AGTTCATCATAACGTAGTCCTCGCATTTGATGTGTTTCTTAAACAG--GCGATAT--GTTCTCTGATTTGATATACTT------TGA-ACGTCTTCTGACC----AGACATTAGAATT--ATA----ATT-CACTAG--T---A-ATCCATGTG-CTTATGATGAGTCAATTAT-TGTTCTGTTTTC---GTAATTT-G-CGGAT---TACCCCAGCGCAGACATTAC-GGG-TTTAAAATCAT-GTG-ACCAATTATTTTTGCA-C--ATTAAATAATCG-AAATTAAACAC-CTTTTTCGT-AATCAGTCTGTCATCCATCAAAACCACTTTGTGACC-CATATGCAACATGTTTCCCCATCGTCTGCAAACACTTGGTATCCACCCGGTATCCCCAATCATCTCGAAAATTGGCGT------GAAACGATGAAcatcatatttaaaacatgacatcatcggttttgacgatattaaattctatttaatatacaaaaatgttatgctatatgtaaacgtgtcttttaacaaataatactgataactttaattatactgtt
gi|20                         :                                                                                        caattatacattctattttttatgtacgtcacatattcttatttgttaaaattattatTTATTATA-GTGACATGTGCA---A-AT-GCAT-AACAT----------TATATA----T-AAA----TATG-CAATT---A--ACACAGAA--CA-------------CA-----CCCGGCCCA-AT-GGACCTTTAAGTCACC----ta
gi|21                         :                                                                                                                             GATAAGATCAA---TTATTGTTTATTATT-GTGACATGTGCAC--ACAT-TCAT-CATGTTATATATATATATATA----T-A------TATA-CAATT---G--ACA-AAAG--TTT--A--TG--G--CA---------------------CTTATATGTCGCC----A-AGATAAT-CAAGAAAGTTATAAT----TAT---------------ATTC-TAA------GGTATTATTT-A-----CAGTT--A--TTAACTtatatgaatgtacatacacatataccctaatgtactatatattaagcatgcttgaaataatacatgtttgattacaattcgatataacagtttgtgcatttcgtctgtttgaaactggtt
gi|22                         :                                                                                                                            AGATATGATAAG---ATATTGTTTATCATT-GTGACATATGCAT--ACAT-TCAT-TATTT----------TATGCG----T-ATATTATTATA-CAGTT---G--ACA-AAAT--TAT--A--TG--G--TA-----ACTGGCCCATTT-GGGTTTATATGTCACC----A-GGGTCAT-CAAGAAAC---TAAG----TA
gi|23                         :                                                                                                                                            TATTGTTTATCATT-GTAACAT-------------TCAC-TATGT----------TAAACA----T-AATTA--TATA-CAATT---G--ACA-AAAT--TAT--A--TG--G--CA-----TCCGA-CCA-TT-GGGCCTTTATGCCACC----A-GCATATG-TAAAAGGA---CATT----TATAT------
gi|24                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GCCAAGAAAGTATCATAAAGCACGATGTTGAATGTTG-----TGTATTGTCTGACGCTGTATGAAACCTTATACGGCAGAACAACGGTCTAATATTGGAATGAGGCCTGAATGAAATATAT-TATTTGAA---TCCAATGTCTTTgaatatcccctttcaatattg
gi|25                         :                                                                                                                                       t---ATATT--TTATTAAT-GTGACATGTGCATG-ATAT-ACAT-GACAA----------TA-ACA----C-G-------ATA-CAAAT---A--AGA-AAATAATAA--A--TA--T--CA-----CCTGGTCCA-CT-GCGCTTTTCGGTCAT---------ATAAT-TATGGAA----TAGT----T
gi|3                          :                                                                                                                                            gtaagtaaatacTT-GTGACATGTGCGT--ACAT-TTAT-TAAGT----------TATACA----T-A------TACA-CAATT---G--ACA-AAAT--TAT--T--TG--G--CA-----CCCGGCACA-TT-GGGCCTATATGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--AAATTCGTAAATAC-T-CTATTATAT-A-----CA--T--AGGTTAACTATGACGTACA-------A---AAT--CCTGACAAAATATTAGTAAAA-TATTCCCTGTGTATCCAAT-ATTGTCAGCATGGAGTATAGT-ATGATAGA--TATGTTATACATATA-ATAGGAAA-ACAGGCAATATATCATAAATCAATACTACATGAGGTATTA-------------------CGAAAACAAGGTATTTCTTCTTTTTAAGAAAACACAGACAAGAAACTTTGCAAGTTGTCTTAGA---TGCGCTGATATGATATGTGCT---AGTCG--TTGGTTTACAT---GTATGTAA---AC--ATTA--TTTACAAA-TAAATCTCTGGAATT-GTTTTCTCGCAG-GTCATTACACAG-T-T-AACACTGAAATAGAAAGTGT-T-------T-TCATCTTCTA-CTGAATTTGACTGACAAAGTCTACAAAGTCACTGATCAGG--TTGCTCCCCAACATACCTTCCGGTTTCAATTC-TGAGT-GGCAAGATACTAGTTCTAAATTGACACAAAACAGAGCGTCCAT---TCTTGT-TTA-AGTTCATCATAATGTAATCCTCACATTTAAAATTTTCCTTAAACAG--GCGATGC--GTTCTCAGTTTTGATATACTT------TGA-ACGTCTTCTGACC----AGACATTAGAATA--ATA----GTT-TACTAG--T---A-ATCCATGTG-CTT-------GTTAATAAT-TGTTCTGTTTTC---GTGATTT-G-CGGAT---AACCCCAGCATAGACATAAC-ATG-TTTAATATCAT-GTG-ACCAATTATTTTTGCA-C--TTTAAATAGTCG-GAATTAAACAC-TTTTTTTGT-AATCCATCTGTACTCAATCAAAATCACTCTATTTGA-CATACGCAACATGTTTCCCCATCGTCTGTAAACACTTGGTATCCACCCGGTGTCCCCAACCATCGCGAGAATTGGCGT------GAAGCGATGAACACCAAGAAAGTATCTCATGGCTCTATTCTGAACATTATC---TATA-TGT-TGATACTTCTTGATACACCACACTGAGGAGGAATAGTCGAGGATGGGCACAATACA
gi|30                         :                                                                                                                                                                                     ATGT----------TATACA----TTA------TGTA-CAATT---T--ACA-AAAT--TGT--A--TG--G--CA-----CCCAGCCCA-TT-GGGCCTCTATGTCACC----
gi|31                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   acaacaatacttacaacattgtgtttataaatggtaaaaaatgctttgCATCAACAATATATCAGGTATTAAGTCTGATATAATAGTTAACGAAAACAAGACATTTCTTCTTTTTAAGAAAGCAGAGACAAGAAAC
gi|32                         :                                                                                                                                                                                                                                                                                                                                                                                                          GTACA-------A---AAT--CCTGATAAAATATTAGTAAAA-TATTCACTGTGTATTTAAT-ATTGTCAGTATGGACGGTAATTTTGTTAAG--AATGTTATAAATACA-ATAGAAgtgtttaattgtt
gi|34                         :                                                                                                                                              TTGTGTATTAAA-GTGACATGTG--T--GCA----AC-AAAAT----------TATA-G----T-A------ATTA-C-ATT-------CA-AATT--TATCAA--TG--GCACA-----CCCGACCAG-AT-GGACCTA
gi|35                         :                                                                                                                                                                 TGTGCAT--ACA----ATGTATAT----------TACAAATAGTT-A------TATA-CAA--------AAA-AAA----AA--A--AG--------------CGGCCCA-TT-GGACCTATAAGTCACC----aatc
gi|37                         :                                                                                                                                                 TTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TAAGT----------TATACAAT--T-G------TAT--TTATT---G----A-AAAT--CAT--taaactattaggtat
gi|38                         :                                                                                                                                                                                                                                                          --G--CA-----CCCGGCCCA-TT-GGACCTATAAGTCACC----t
gi|39                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  aaaaaacaaTC-TTAGA-GGTAGAATACCACATCTAAATTGGGCCAACAATGAACGTtaaactgttaggtataaactg
gi|4                          :                                                                                                                                                GTTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TAAGT----------TATACA----T-A------TATA-CAATT---A--ACA-AAAT--TAT--T--TG--G--CA-----CCCGGCCCA-TT-GGGCCTATATGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--AAATTCGTAAATAC-T-CTATTATAT-A-----CA--T--AAGTTAAATATGACGTACA-------A---AAT--CCTGACAAAATATTAGTAAAA-TATTCACTGAGTATCCAGT-ATTGTCAGTATGGAGTGTA----------------GTTATAAATATA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGATGTATTAAGTTTGACATAATATTTTACGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGAGAAGAAACTTTGCAAGTTGTCTTGGA---TGCGCTGATATGATATATGCA---AGTCG--TTAGTTTATAT---GCTTGTAA---GC--ATTA--TTTACAAA-TAAATCTCTGAAATT-GTTTTCTTGCAG-GTCATTATACAG-T-TCA-CACTGA
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TCCTTAAAAAG--GCGATAT--GTTCTCAGTTTTAATATTCTT------TGA-ACGTCTTCTGACC----AGACATTAGAATA--ATA----GTT-TACTAG--T---A-ATCCATGTG-CTTGTGATAAGTCAATAAT-TGTTCTGTTTTC---GTAATTT-G-CGGAT---AACCCTAGCATAGACATAAC-GTG-TTTAATATCAT-GTG-ACCAATTATTTTTGCA-C--ATTAAATAGTCG-GAATTTAACAC--TTTTTTGT-AATCCGTCTGTCATCCATCAAAATCACTCTGTTCCA-CATACGCAACATGTTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccttaaaaaggcgatatgttctcagttttaatattctttgaacgtcttctgaccagacattagaataatagtttactagtaatccatgtgcttgtgataagtcaataattgttctgttttcgtaatttgcggataaccctagcatagacataacgtgtttaatatcatgtgaccaattatttttgcacattaaatagtcggaatttaacacttttttgtaatccgtctgtcatccatcaaaatcactctgttccacatacgcaacatgttt
gi|5                          :                                                                                               gtttattattgtgacatgtgcatacattcattaagttatacatatatacaattaacaaaattatttggcacccggcccattgggcctatatgtcaccaggataatcaagaaagtaattatatacaaaattcgtaaatactctattatatacataagttaaatatgacgtacaaaatcctgacaaaatattagtaaaatattcactgagtatccagtattgtcagtatggagtgtagttataaatataataggaaaacaggcaatatatcatacatcaacaatacatgatgtattaagtttgacataatattttacgaaaacaagatatttcttctttttaagaaagcacagagaagaaactttgcaagttgtcttggatgcgctgatatgatatatgcaagtcgttagtttatatgcttgtaagcattatttacaaataaatctctgaaattgttttcttgcaggtcattatacagttcacactgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATGGAAAGTGTGTGACAAGATTTCATCTTCAATCTGAAGTAGATT-ACAAAGTGTG---AGTCTTTGCTCTCG--TTGCTCACCGACATATCGTCGCGTTTCAACTC-TTTGA-GGTAGAATACCACATCTAAATTGGGTCAACAATGAACGTTCCTG--T-TTGT-TAA-ATTTTAAAACCATATATTGTTCAAGTTCAAATTTATTTTTAAA--A--GTAACATAAGTCTGCAATTTAGGCATC--T------TGCTACTTCTACCTTCC----AGATATTTGAGTA--GTATTTCGTTATCTTAG--TCTTA-A-CAATGT--CT----ATGTGT--ATAAC-AGTTTTGTTTTCAAAATAGTTC-ATCAGATTTAAAT-------TGGACAAAACTGT--TTTCAGATCATTGT--ACCAATTATGTTTACA-C--TTGTTATAGTTC-ATGTTAAAGAC-ACGCCTGGT-TAGCCTATTGTCATCAAACAATACAAGTCTGTTCCAGTAT-CGTATCATTGCTACCCAACGGCGATAACAACTAGGAAGCCATCCCGCACATGCGGTGATTGCAAGTTTCGGGGC------AAATCTGTGTACGCCAAGAAAGTACCGTAAAGCACGATTCTGTACATTGTC---TG---------GTAATGTTTGAATCCCCATACTGATGCACAGTAGTCCAATATTGGTACAAAACACGATTCAAATA-GTCTTTTGGTAG--TTTAATATCTTTTCCAAG-GTATAAGTCATTTAT
gi|6                          :                                                                                                            ttattatagtgatatgtgtacAGATAAG---ATACTGTTTATTATT-GTGACATGCG-----ACAT-TCAT-TATGT----------TGTACA----T-A------TATA-CAACT---G--ATA-AA----TAT--A--TG--G--CA-----CCCAGCCCA-TT-GGGCTAATATGCCACC----A-GATTAAT-CAAGAAAG---TAAT----TATAT------AGA--TGATTCGTGAATAC-TGCTATGATAT-A-----CA--T--ATGTTAACTTTTAAGTACATGTACGTA---AAT--GCTGACAAAATATTAGCAAAA-TATT-TCTGTGTATTTAAT-ATTGGTAGTATGGACGATAGTTATTGTA-ATTTTTTTTATAAATATA-ATAAGAAT-ATTGACAATAGATCATACATCAACAAAACATGAACTATAAAGTCTGACGTAATAGTTTACAAAAACATCACATTTCTCCTTTTTATGAAAGCACAGACAAACAA------AGGTTTTCTCGGA---TGCGCTGATATGATATGTGAA---AGTCG--GT-GTTTATAT---GCATGTTA---GCAAATTAATCTTA-AAA-T--ATCTAT---ATA-GTTt
gi|7                          :                                                                                                                     tATA---AGAGAAGAGAA----ATATTGTTTAT-ATTCGT--TATGT-TAT--ACAT-ACA----AAT----------TAT-CA----T-A------CATA---ATT---G--ACA-AAAT--TAT--A--TG--G--CA-----CCCGGACCA-TTTGAATTTATATGCCACC----A-GGTTATT-CAAGAGAG---TAATAAACTATAT------ATA--CCATTCGTAAATAC-TGTTAGTATAT-AGTTAACT--T--AT-TTAACTATGAAGTTCA-------A---ACT--CCTGACTAAGTATTTGCAAAAATATTCCCTGTGTATTTGAC-ATTGTTTGTATGAACGGTAATTATGGTAAA--TTTGTTATAAATACA-ATAAGACT-ACTTGCAATAGTTCATACATCAACAATACA----GTAT-------GACATAATAGTTGACGAAGACAAGATATTACATCTTTTTAAGAAAGCACAGACAAGACATTTTGCAAGTTTTCTTGGA---TGCGCCGATATAATCTGTGAG---ACTC---CTGGTTTATATGTAGCATGTTA---GC--AATA--TCTACAAA-TAAATCTCTGAAATA-GTTTTCTCGCAG-GCCATTATACAG-T-TCA-CACTGAAATAGGAAGCGC-T-------TCGTATCTTCggcaaacgccattttctgtttcgttgactgcaattagtatttgccttactaagttctatatctgaccctgaaaagtgcaca
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TACTTCTTCTTCTCATGTAAGCATATACAATATATTTAGCTACTTTTCTGGGAACGTGTG-TGACAAGAAATACACATTTAGCCATACTA-TCCATAC----CAT-TAAACTGC--AT-A--TTTGAAAA-TTGTTCATTCAAAAT-GTCTGCT-GTAATATCATTGTAAAA-TGT-A-CATTAGATCAAAAAATGA-T-------TTTCATCTTCAATCTGAAGTAGATT-ACAAATTGTGCAGAGTCTTTGCTCTCG--CGGCTCACCGACATATCGTCCCGTTTCTATTC-TTAGT-GGTAA--------------ATTGGGCCAACAATGAACGTTCCTG--T-TTGC-TCA-AATTTAAAAGCACATATTGTTCGAATTCAAATTTATCTTTAAA-AGTTAC-ATAA--GTCCGTAATTTAGGCACTCTTACTACATAA-AC--CTTC----C----AGATATTTGAGTA--GTA----TTC-CGTTAGCTT---A-GTCTAAACAATTT-TTATGTGT--ATAAC-AGTTTTGTTTTCAAAATAGTTT-ATCAGAT------TCGAAT-TGGACATAAC--TGTTTTCAGATCAC-TAC-ACCAATTACTTTttgtactcaaatatcagacaa
gi|9                          :                                                                                                                    AAATAAGTAAGTAAG-TAAGTAAATATT--TTATTAAA-GTGACATGTGCAT--ACA----ATATATGT----------TACAAA----T-AGTTG--TATA-CAA--------ACA-AAAA--CA-------A--G--CA-----CCCGGCCCA-TT-GGACCTATAAGTCACC----
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): ATTTGTAAGTAAGTATGTAAGTAAGTTTTTATTATAAAAACGTGTGTAAATTTATAACATAATATGTTAATATGCAGTTTTTACAGAACACAATCGGCCCAATGGACCTAGTCACATATATAAATAT
Unaligned ( gi|27 ): AATACTTCTTCATGTGTTAATAATATTTAAAAAAAATATACAAATTGTTTAAAAAATGTGTCATGTGATAACAATATTGGATGTATTTTAAGTACGTTAAAAGGACGTGGCTAACTGTTTTA
Unaligned ( gi|28 ): TAAGTATGTAGATATTGACATGTGCATGACAATACAATAACATGCAAAATGATATGTGGAGCACTAAGGCCTAACAGGCATATAATAATTCGCTACCAAAAAACAAAAATGTCATTCCAT
Unaligned ( gi|29 ): TAAGGTGACAGGTACACATGTAACATGACATATATTTGGAACACACACACGATGGAACCATAACAGATACTATCTTAGACAAGCATCATTAAATCATTCATTATGGTTAGACACTAAA
Unaligned ( gi|33 ): ACCTTCCAGATATTTGAGTAATAGTCCGTTATCTTGGTCTTAACGATATCTATGTGTATAACAGATTTGTTTTCAAAAAAGTTTATCAGATT
Unaligned ( gi|36 ): GTCACTTCCAATAAATAGAAGTAATATGAAATTCATATGATAATAATCAACATAATAGACTATTGTAGGTACACATTTGCAT






Alignments
lowQualScore                  :                                                                                                             111            111                                                                   111111                                                                                                                         111               11        11111                            11111111111                                                                           1111                                                                                                                                                                                                                                                                                                   1111111            1                                                                                                                            222                                                      1  11                              111111                 1111                  2222   1         111          11  3333      11                  222       111     2222222222222          11111          111111                                            11                                                                                                                            222222                                                   222222222222                                                                   1  1        222            222   1    11         
lowQualScore                  :                                                                                                             111       0    000               2          1  44   333   3  1 88888888888      22 1 999999    1     555555   1   777   666666  22  44444         33          1      555555      44        444    5555     888888   000             3 33        22222 3  6666666           1     33333333333   55                 4             1         4                1           1111 2             4   0    5          1                      0      0  1             3                                                                 888                   1 888     66  0        888        777  66  1 66        4  0    0      55            5              0                   5 6666666 4        1 1            7            0        1  1  77      0  2                 0    5 1  88     4      55  0       22   0 22  1       222 8    5   5    7777 1   1  1 1   333      1  3        1  55  6   888    1      1     1   666666   5  4     0 5  2222       1     77   0000   1      77 000 5 1      22  1111   3  55     5    1       888       444     4444444444444          11111     1    111111                6 99  3         6           22        6       1                            6   3                                                     3                    333333   1     1                3  1   1               0 555555555555              1           1 0         1     1       1      1 4 1 1 0  0    0 1 555      1     000   5    88  22     
lowQualScore                  :                                                                                                             ...       .    ...               .          .  ..   ...   .  . ...........      .. . ......    .     ......   .   ...   ......  ..  .....         ..          .      ......      ..        ...    ....     ......   ...             . ..        ..... .  .......           .     ...........   ..                 .             .         .                .           .... .             .   .    .          .                      .      .  .             .                                                                 ...                   . ...     ..  .        ...        ...  ..  . ..        .  .    .      ..            .              .                   . ....... .        . .            .            .        .  .  ..      .  .                 .    . .  ..     .      ..  .       ..   . ..  .       ... .    .   .    .... .   .  . .   ...      .  .        .  ..  .   ...    .      .     .   ......   .  .     . .  ....       .     ..   ....   .      .. ... . .      ..  ....   .  ..     .    .       ...       ...     .............          .....     .    ......                . ..  .         .           ..        .       .                            .   .                                                     .                    ......   .     .                .  .   .               . ............              .           . .         .     .       .      . . . . .  .    . . ...      .     ...   .    ..  ..     
lowQualScore                  :                                                                                                             888       8    000               0          5  55   777   8  0 77777777777      55 8 333333    8     000000   7   888   222222  44  33333         88          0      555555      22        777    7777     888888   222             6 99        77777 6  7777777           9     44444444444   55                 0             0         4                9           2222 3             4   2    7          3                      2      1  4             2                                                                 888                   0 888     99  2        888        888  11  9 11        4  8    1      44            0              2                   0 2222222 2        0 4            9            3        6  0  99      7  7                 8    0 0  66     2      22  1       00   2 00  1       999 9    7   7    1111 0   4  0 0   888      0  7        4  77  6   444    3      0     0   444444   7  3     1 1  1111       0     99   0000   4      99 000 7 4      33  3333   0  00     7    7       444       000     7777777777777          88888     0    444444                7 22  2         7           77        7       0                            7   2                                                     8                    000000   0     4                2  4   4               8 000000000000              4           0 6         0     0       0      0 2 0 2 0  0    2 0 000      0     555   5    55  00     
consensus                     :                                    NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCAAATA--TAGATAAGATAAG---ATATTGTTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TANGT----------TATACA--T-A------TATA-CAATT---G--ACA-AAAT--TAT--A--TGG--CA-----CCCGGCCCA-TTGGGCCTATANGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--NAATTCGTAAATAC-TGCTATTATAT-----A-CA--T--AGGTTAACTATGACGTACA-------A---AAT--CCTGACAAAATATTAGT-AAAATATTCCCTGNGTATCCAAT-ATTGTCAGTATGGAGTGTAGTTATGATAGA--TATGTTATAAATACA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGAGGTATTAAGTCTGACATAATAGTTTACGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGACAAGAAACTTTGCAAGTTGTCTTGGA---TGCGCTGATATGATATGTGNA---AGTCG--CTGGTTTATAT---GCATGTAA---GC--ATTA--TTTACAAA-TAAATCTCTGAAATN-GTTTTCTCGCAG-GTCATTATACAGTTCACACTGAAATAGAAAGTGT-T-------TCTCATCTTCNA-CTGAATTTGACTGACAAAGTCTACAAAGTCTCTGATCNGG--TTGCTCCCCGACATACCTTCCGGTTTCAATTC-TNAGT-GGTAAGATACCACNTCTAAATTGGNNCAACANNGAGCGTTCATG--TCTTGT-TTA-AGTTTATCANAACGTANTNCTCGCGTTCAAANTTTTCCTTAAACAG--GCGATAT--GTCCTCAGTTTNGACATNCTT------TGA-ACGTCTTCTGACC----AGACATTNGAGTA--ATA----GTT-TACTAG--T---A-ATCCATGTG-CTT-TGATGNGTCAATAAC-TGTTCTGTTTTCAAAGTAGTTT-G-CGGAT---AACCCCAGCATAGACATAAC-GTG-TTTAANATCAC-GTG-ACCAATTATTTTTGCA-C--TTTAAATAGTCG-GAATTAAACAC-TTTTTTTGT-AATCCGTCTGTCATCCATCAAAATCACTCTGTTCCA-CATACGCAACATGTTTCCCCATCGTCTGTAAACACTTGGTATCCACCCGGTATCCCCAATCATCGCGAGAATTGGCGT------GAANCGATGAACGCCAAGAAAGTATCGTATAGCTCGATTCTGAACGTTGTC---TGTA-TGT-TGATACTGTTTGAATCCCCATACTGANGAACAATAGTCNAGGATNGGCACAANACACGANTCGNATA-GT-TTTTCGNAG--TTTAATNTCTTTTCCAAGAGTATAAGTNNTTTAT
Reference ( family-717 )      :                                    NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCAAATA--TAGATAAGATAAG---ATATTGTTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TANGT----------TATACA--T-A------TATA-CAATT---G--ACA-AAAT--TAT--A--TGG--CA-----CCCGGCCCA-TTGGGCCTATANGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--NAATTCGTAAATAC-TGCTATTATAT-----A-CA--T--AGGTTAACTATGACGTACA-------A---AAT--CCTGACAAAATATTAGT-AAAATATTCCCTGNGTATCCAAT-ATTGTCAGTATGGAGTGTAGTTATGATAGA--TATGTTATAAATACA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGAGGTATTAAGTCTGACATAATAGTTTACGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGACAAGAAACTTTGCAAGTTGTCTTGGA---TGCGCTGATATGATATGTGNA---AGTCG--CTGGTTTATAT---GCATGTAA---GC--ATTA--TTTACAAA-TAAATCTCTGAAATN-GTTTTCTCGCAG-GTCATTATACAGTTCACACTGAAATAGAAAGTGT-T-------TCTCATCTTCNA-CTGAATTTGACTGACAAAGTCTACAAAGTCTCTGATCNGG--TTGCTCCCCGACATACCTTCCGGTTTCAATTC-TNAGT-GGTAAGATACCACNTCTAAATTGGNNCAACANNGAGCGTTCATG--TCTTGT-TTA-AGTTTATCANAACGTANTNCTCGCGTTCAAANTTTTCCTTAAACAG--GCGATAT--GTCCTCAGTTTNGACATNCTT------TGA-ACGTCTTCTGACC----AGACATTNGAGTA--ATA----GTT-TACTAG--T---A-ATCCATGTG-CTT-TGATGNGTCAATAAC-TGTTCTGTTTTCAAAGTAGTTT-G-CGGAT---AACCCCAGCATAGACATAAC-GTG-TTTAANATCAC-GTG-ACCAATTATTTTTGCA-C--TTTAAATAGTCG-GAATTAAACAC-TTTTTTTGT-AATCCGTCTGTCATCCATCAAAATCACTCTGTTCCA-CATACGCAACATGTTTCCCCATCGTCTGTAAACACTTGGTATCCACCCGGTATCCCCAATCATCGCGAGAATTGGCGT------GAANCGATGAACGCCAAGAAAGTATCGTATAGCTCGATTCTGAACGTTGTC---TGTA-TGT-TGATACTGTTTGAATCCCCATACTGANGAACAATAGTCNAGGATNGGCACAANACACGANTCGNATA-GT-TTTTCGNAG--TTTAATNTCTTTTCCAAGAGTATAAGTNNTTTAT
gi|1                          :                                                                                                     TCCAAATA--TAGATAAGATTAG---ATATTGTTTATTATT-GTGACATGTGCAT--ACTT-TCTT-CAAGT----------TATACA--T-A------GATA-CAATT---G--ACA-CAAT--TAT--T--TGG--CA-----CCAGACCCT-TTGGGCCTATATGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--AAATTCGTAAATAC-T-TTATTATAT-----A-CA--T--TGGTTAACTATGACGTACA-------A---CAT--CCTGACAAAATATTGGT-AAAATGTTCCCTGAGTATCCAAT-ATTGTCAGTATGGAGTGTAGTTATGATAAG--TTTGTTATAAATATA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGAGGTATTAAGTATGACATAATAGTTTACGAAAACAAGATATTTCTTCTTTTTAAGGAAGCACAGACAAGAAACTTTGCAAGTTGTCTTGGA---TGCGCTGATATGATAGGTGGA---AGTCG--CTGGTTTATAT---GAATGTAA---GC--ATTA--TTTACAAA-TAATTCTCTGAAATA-GTTTTCTCGCAG-GTTATTATACAG-------TGAAATAGAAAGTGT-T-------TTTCATCTTCTA-CTAAATTTGACTGACAAAGTCTACAAAGTCTCTGATCAGG--TTGCTCCCCAACATACCTTCCGGTTTCAATTC-TGAGT-GGTAAGATACCAGTTCTGAATTGACACAATACAGAGCGTTCA----TTTTGT-TTA-AGTTTATCATAACATAGTCCTCACATTTAAATTTTTCCTTAAACAG--GCGATAT--ATTCTCAGTTTTGATATACTT------TGA-ACGTCTTCTGACC----AGACATTAGAATA--ATA----GTT-TACTAG--T---A-ATCCATGTG-CTTGTGATAAGTCAATGAT-TGTTCTGTTTTC---GTAATTT-G-CAGAT---AACCCCAGCATACACATAAC-GTG-TTTAATATCAT-GTG-ACTAATTATTTTTGTA-T--TTTAAAAAGTCG-AAAGTAAACACTTTTTTTTGT-AATCCGCCTGTCATCCATCAAAATCACTTTGTTCCA-CATACGCAACATGTTTCCCCATCGTCTGTAAACACTTGGTATCCACCCGATGTCCCCAATCATCGCAAGAATTGGCGT------GAAGAGATGAACACCAATACAGTATCTTATGGCTCTTTTCTGAACATTATC---TTTA-TGT-TGATACTTCTTGAATCTCCACACTGAGGAGCAATAGTCAAGGATAGGCACAACACATGATGTGTACA-GT-TTTTCGTAGGATTTGAACTCTTT---AAGAGTAT--GTATTTTAT
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  tgattatgtctattgattatgtcattaacaagcgatcttgctttctgcctaaatggtcatccgtgTACACATCAC-ATG-CATAATGTCAA-AAG-TCCAGTTATTTGTACAGCGGTT---ATAATCATGCAT-AAATAC-TTTCTTTGTCAGTCTAT-TATTATCCATGATAATAAGTCCATTCCA-AAACCGTAACATCCATGTCCATCGTCTGTACACGCTTGGTATCCAGCCAGTATCACC------CACGAGAGCTGATGTCGGCCCAAACCTACGTACGCCAAGGAAATAACGCATAGCTCGATTTTGGACGTTGTCAATCGT----T-TGAAACTGTCTATATCCCCATACTGATGCACAGTAGTCTAGGATCGGCACAACACACGAATTGTAAA-GT-TTTTCAAActataattccaccaagtgcacggcctgctgctttcccgagcgattcactagtgtacattaagtggttcttttcatggaaaataacccctagatatttgtata
gi|11                         :                                                                                                     cgagttTA--TAGATGAGATAAG---ATATTGTTTATCATT-GTGACATGTGCAT--ACAT-TCAT-TAAGT----------TATACA--T-A------TATA-CAATT---G--ACA-AAAT--CAT--T--TGG--CA-----CCCGGCCAT-TTCGGCCTATATGTCACC----A-GGATAAT----GAAAG---TAAT----TATAT------ACA--CAATTCGTAAATAC-T-CTATTATAT-----A-CA--T--AGGTTAACTATGATGTACA-------A---AAT--CCTGACAAAATATTGGT-AAAATATTCCCTGAGTATCCAAT-ATTGTCAGTATGGAGTGTAGTTATGATAGA--TATGTTATAAATATATATAcgaacggaggatgtatttctttgttacttcttt
gi|12                         :                                                                                                        tgtaaaagtGATAAGATACG---ATATTGTTTATTATT-GTGACATGTGCAT--ACAT-TAAT-TATGT----------CGTACA--T-A------TATA-CAATT---G--ACA-AAGT--TAT--T--TGA--CA-----CCCTGCCCA-TTGGTCCAGTTTGTCATC----A-GGTTAAA-CAAGAAAG---TATT----TATAT------ACA--CAGTTCACAAGTAC-TGCTATTGTAT-----A-CA--T--AGGCTAACTATGAAGCATA-------A---AAT--GCTGACAAAATATTAGT-AAAATATTCCCTGTGTGTATAATAATTTT---TAT--AGT-TCG-TGTGAGCGAT-TATGTTATAAATACA-CTA--AAATGCAGGCAGTAGATCAAACCTTATCAATACATGAAGTATTAAATCTGACATAATAATGTGCGAAAACAtatccaatcatggttccaatatttaacatattaaactaatttgataaaaatatgataatt
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GTTTCTACTC-TTAA--ACTAGAATACCACCTCTAAACTGGGTCAACAACAAACGTTCATGTTTCTTCTCTTAGAGGT----AGAATACATTGTTCAAGTTCAAAA-----AGTGAAAAGTTAC-ATAA--ATCCGCAATTTAGACACTCAT------TTA-----CTTCTG-CCTTCAAGTTGTTTGAGTAGCATATC--GTTATCTTAG--T---ATAGTGATGT--CT----ATGTGT--ATAACATATT-TGTTTTCAAAATAGTTTAA-CAGATTGAAAT-------TGGACGTGAC--TGTTTTCAAATCAC--TGCACCAATTATTTT
gi|14                         :                                                                                                                ctATAAG-TAAGT--AAATAGTTTATAATA-GTGGCATGTGCAT--GG----CAG-TACA------------ATA-A--T-A------TATG-CA-TT---G---CA-AAAT--GAT--AAATAG--TAGATGACCCGGCCCA-GTGGGCCTACAAGTCAC
gi|14                         :                                                                                                                                                                                                                         CA-ATAG--TAG--A--TG----A-----CCCGGCCCA-GTGGGCCTATAAGTCACT----GCGAATAA------ATAG---AAGT----CATAT------GCA--tgccaataaatagaagtggtatgcaatagtagatgacccggcccagtgggcctataagtcactgcgaataaatagaagtcatatgcaatttcatttgataataagcaatgggacataaataggataatgtaggtaaactttcaaaggcacaaatgtaggtaaa
gi|15                         : ataagtaagtaaatagtttataatagtggcatgtgcatggcagtacaataatatatgcattgcaaaatgataaatagtagatgacccggcccagtgggcctacaagtcactgccaataaatagaagtggtatgTTATTAAA-GTGACATGTG--T--ACAT-GTAA-CATG--------------ACA--T-A------TATA-TAATTTTAA--ACA-ACA----------------CA-----CCCGGCCCA-ATGGACCTATAAGTCACC-------TATA---CAAATAAA---CAAT----TATATTATTTCACATGAAATT-----ATGCTTGTTATTAAAC-----ACCA--TAAAAATGAATAAT-ATGTACA-------AGGTAATTACATAACAACATATTAAT-atttcatttgataataagcaatgggacataaataggataatgtaggtaaactttcaaaggcacaaatgtaggtaaa
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        aTTTTTTCTTTTTAAGAAAGCACAGACAAGATACTTTGCAAGATGTCTTGGA---TGCGCTGATATGATATGTGCA---AGTCG--TTGATTTATAT---GCTTGTAA---GC--ATTA--TTTACAAA--AAATCTCTGAAATT-GTTTTCTCGCAG-GTCATTATACAGTTCACACTGAAATAGAAAGTGT-T-------TTTCATCTACTA-CTGAATTTGACTGACAAAGTCTACAAAGTCTCTGATCAAG--TTGCTCCCCAACATACCTTCCGGTTTCAATTtacgattgtttgaaaagtcattggttatataatgtatttcttcttctcatgtaagccttaacaatatatttagctacttttct
gi|17                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TAA---AC--AT-A--TCAGCAAAGTA--TCT-TGAAACACATTTTCTCTGAT-ATTATTGTAAAGTCCACAATGTAACAGAAAATGT-T-------TCTCGTCTTCAA-CGGATCCTGTGTCACAGAATCTTCATAGTCTCTGTTCTGGAGTT--TCACCAATATACCTTCCAGTCTCTATTCTTAAATAGGTAAAATGCCACACCTAAATTGACACATAATAGATCTCTCGT---TTTTCT-TTA-AATTGGTTACACCATACT
gi|18                         :                                                                                                                                          TAGT-GGGACATCTG--T--ACAT-GTAT-CATGA----------CATACA--T-A------TACAGTATTT---GTAACA-ACA----------------CG-----CCGGGCCGA-GTGGAGCTATAAGTCACCTATAA-AGATAA------ATAG---TTAT----TAT-T------ACAT-TAAT--GTAATTA-----TATTATTTG----A-CA--T--Ag
gi|19                         :                                                                                                              aagtaagtaagtagtaagtaagtgagtcagta-GTGACATGTGCATCGACATATCAA-TAAA------------ACTCA----A------TAAA-CAATA---A--AAG-AGAC--TGA--A----G--CG-----TCCGGCCAA-ATGAACCTATAAGTCACT----ATGGACAATACAAAAtaagcatgtttgcaattaaacatcatcaaacaatccaattgaatggttgcatgcatgttttaaaa
gi|2                          :                                                                                                 caaaTTCAAACA--T---TAAGATAAG---ATATTGTTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TAAGC----------TATACA--T-A------TATA-CAACT---G--ACA-CACT--TAT--T--TGG--CA-----CCCGGTTCA-TTGGGCCTATATGTCAAT----A-GGATAAT-ATAGAAAG---TAAT----TATAT------ACA--AAATTCGTATATAC-TG-TATAATAT-----A-CA------GGTTAACTATGACATACA-------C---AGT--CCTGACAAAATATAAGC-AAAATATTCCCGGAGTATCCAAT-ATTGTCAGTATTGAGTCTAGTTATGATAGA--TATGATATAAATACA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGAGGTATTAAGTCTGACATAATAGTTGGCGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGATAAGAAACTTTGCAAGTTGTCTTGAA---TCCGCTGACATGATATGTGGA---AGTCG--CTGGTTTATAT---ACATGTAA---GC--ATTA--TCTACAAA-TAAATCTCTGAAATT-GTTTTCTCGCAG-GTCATTATACAGTTTACACTGAAATAGAAAGTGT-T-------TCTCATTTTCTA-CTGAGTTTAACTGACAAAGTCTACAAAGTCTCTAATTAGG--TTGTTCCCATATAAATCTTCCGGTTTCAATTC-TCAGT-GGTAAGATACCAGTTC-----TGACAAAATACAGAGCATGCAT---TCTTAT-TTA-AGTTCATCATAACGTAGTCCTCGCATTTGATGTGTTTCTTAAACAG--GCGATAT--GTTCTCTGATTTGATATACTT------TGA-ACGTCTTCTGACC----AGACATTAGAATT--ATA----ATT-CACTAG--T---A-ATCCATGTG-CTTATGATGAGTCAATTAT-TGTTCTGTTTTC---GTAATTT-G-CGGAT---TACCCCAGCGCAGACATTAC-GGG-TTTAAAATCAT-GTG-ACCAATTATTTTTGCA-C--ATTAAATAATCG-AAATTAAACAC-CTTTTTCGT-AATCAGTCTGTCATCCATCAAAACCACTTTGTGACC-CATATGCAACATGTTTCCCCATCGTCTGCAAACACTTGGTATCCACCCGGTATCCCCAATCATCTCGAAAATTGGCGT------GAAACGATGAAcatcatatttaaaacatgacatcatcggttttgacgatattaaattctatttaatatacaaaaatgttatgctatatgtaaacgtgtcttttaacaaataatactgataactttaattatactgtt
gi|20                         :                                                                            caattatacattctattttttatgtacgtcacatattcttatttgttaaaattattatTTATTATA-GTGACATGTGCA---A-AT-GCAT-AACAT----------TATATA--T-AAA----TATG-CAATT---A--ACACAGA----AC--A-------CA-----CCCGGCCCA-ATGGACCTTTAAGTCACC----ta
gi|21                         :                                                                                                                 GATAAGATCAA---TTATTGTTTATTATT-GTGACATGTGCAC--ACAT-TCAT-CATGTTATATATATATATATA--T-A------TATA-CAATT---G--ACA-AAAG--TTT--A--TGG--CA--------------------CTTATATGTCGCC----A-AGATAAT-CAAGAAAGTTATAAT----TAT---------------ATTC-TAA------GGTATTATTT-----A-CAGTT--A--TTAACTtatatgaatgtacatacacatataccctaatgtactatatattaagcatgcttgaaataatacatgtttgattacaattcgatataacagtttgtgcatttcgtctgtttgaaactggtt
gi|22                         :                                                                                                                AGATATGATAAG---ATATTGTTTATCATT-GTGACATATGCAT--ACAT-TCAT-TATTT----------TATGCG--T-ATATTATTATA-CAGTT---G--ACA-AAAT--TAT--A--TGG--TA-----ACTGGCCCATTTGGGTTTATATGTCACC----A-GGGTCAT-CAAGAAAC---TAAG----TA
gi|23                         :                                                                                                                                TATTGTTTATCATT-GTAACAT-------------TCAC-TATGT----------TAAACA--T-AATTA--TATA-CAATT---G--ACA-AAAT--TAT--A--TGG--CA-----TCCGA-CCA-TTGGGCCTTTATGCCACC----A-GCATATG-TAAAAGGA---CATT----TATAT------
gi|24                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GCCAAGAAAGTATCATAAAGCACGATGTTGAATGTTG-----TGTATTGTCTGACGCTGTATGAAACCTTATACGGCAGAACAACGGTCTAATATTGGAATGAGGCCTGAATGAAATATAT-TATTTGAA---TCCAATGTCTTTgaatatcccctttcaatattg
gi|25                         :                                                                                                                           t---ATATT--TTATTAAT-GTGACATGTGCATG-ATAT-ACAT-GACAA----------TA-ACA--C-G-------ATA-CAAAT---A--AGA-AAATAATAA--A--TAT--CA-----CCTGGTCCA-CTGCGCTTTTCGGTCAT---------ATAAT-TATGGAA----TAGT----T
gi|3                          :                                                                                                                                gtaagtaaatacTT-GTGACATGTGCGT--ACAT-TTAT-TAAGT----------TATACA--T-A------TACA-CAATT---G--ACA-AAAT--TAT--T--TGG--CA-----CCCGGCACA-TTGGGCCTATATGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--AAATTCGTAAATAC-T-CTATTATAT-----A-CA--T--AGGTTAACTATGACGTACA-------A---AAT--CCTGACAAAATATTAGT-AAAATATTCCCTGTGTATCCAAT-ATTGTCAGCATGGAGTATAGT-ATGATAGA--TATGTTATACATATA-ATAGGAAA-ACAGGCAATATATCATAAATCAATACTACATGAGGTATTA-------------------CGAAAACAAGGTATTTCTTCTTTTTAAGAAAACACAGACAAGAAACTTTGCAAGTTGTCTTAGA---TGCGCTGATATGATATGTGCT---AGTCG--TTGGTTTACAT---GTATGTAA---AC--ATTA--TTTACAAA-TAAATCTCTGGAATT-GTTTTCTCGCAG-GTCATTACACAGTTAACACTGAAATAGAAAGTGT-T-------T-TCATCTTCTA-CTGAATTTGACTGACAAAGTCTACAAAGTCACTGATCAGG--TTGCTCCCCAACATACCTTCCGGTTTCAATTC-TGAGT-GGCAAGATACTAGTTCTAAATTGACACAAAACAGAGCGTCCAT---TCTTGT-TTA-AGTTCATCATAATGTAATCCTCACATTTAAAATTTTCCTTAAACAG--GCGATGC--GTTCTCAGTTTTGATATACTT------TGA-ACGTCTTCTGACC----AGACATTAGAATA--ATA----GTT-TACTAG--T---A-ATCCATGTG-CTT-------GTTAATAAT-TGTTCTGTTTTC---GTGATTT-G-CGGAT---AACCCCAGCATAGACATAAC-ATG-TTTAATATCAT-GTG-ACCAATTATTTTTGCA-C--TTTAAATAGTCG-GAATTAAACAC-TTTTTTTGT-AATCCATCTGTACTCAATCAAAATCACTCTATTTGA-CATACGCAACATGTTTCCCCATCGTCTGTAAACACTTGGTATCCACCCGGTGTCCCCAACCATCGCGAGAATTGGCGT------GAAGCGATGAACACCAAGAAAGTATCTCATGGCTCTATTCTGAACATTATC---TATA-TGT-TGATACTTCTTGATACACCACACTGAGGAGGAATAGTCGAGGATGGGCACAATACA
gi|30                         :                                                                                                                                                                         ATGT----------TATACA--TTA------TGTA-CAATT---T--ACA-AAAT--TGT--A--TGG--CA-----CCCAGCCCA-TTGGGCCTCTATGTCACC----
gi|31                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  acaacaatacttacaacattgtgtttataaatggtaaaaaatgctttgCATCAACAATATATCAGGTATTAAGTCTGATATAATAGTTAACGAAAACAAGACATTTCTTCTTTTTAAGAAAGCAGAGACAAGAAAC
gi|32                         :                                                                                                                                                                                                                                                                                                                                                                                         GTACA-------A---AAT--CCTGATAAAATATTAGT-AAAATATTCACTGTGTATTTAAT-ATTGTCAGTATGGACGGTAATTTTGTTAAG--AATGTTATAAATACA-ATAGAAgtgtttaattgtt
gi|34                         :                                                                                                                                  TTGTGTATTAAA-GTGACATGTG--T--GCA----AC-AAAAT----------TATA-G--T-A------ATTA-C-ATT-------CA-AATT--TATCAA--TGGCACA-----CCCGACCAG-ATGGACCTA
gi|35                         :                                                                                                                                                     TGTGCAT--ACA----ATGTATAT----------TACAAA--T-AGTTA--TATA-CAA--------AAA-AAA----AA--A--AG------------CGGCCCA-TTGGACCTATAAGTCACC----aatc
gi|37                         :                                                                                                                                     TTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TAAGT----------TATACAATT-G------TAT--TTATT---G----A-AAAT--CAT--taaactattaggtat
gi|38                         :                                                                                                                                                                                                                                            G--CA-----CCCGGCCCA-TTGGACCTATAAGTCACC----t
gi|39                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              aaaaaacaaTC-TTAGA-GGTAGAATACCACATCTAAATTGGGCCAACAATGAACGTtaaactgttaggtataaactg
gi|4                          :                                                                                                                                    GTTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TAAGT----------TATACA--T-A------TATA-CAATT---A--ACA-AAAT--TAT--T--TGG--CA-----CCCGGCCCA-TTGGGCCTATATGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--AAATTCGTAAATAC-T-CTATTATAT-----A-CA--T--AAGTTAAATATGACGTACA-------A---AAT--CCTGACAAAATATTAGT-AAAATATTCACTGAGTATCCAGT-ATTGTCAGTATGGAGTGTAGTTAT----------------AAATATA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGATGTATTAAGTTTGACATAATATTTTACGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGAGAAGAAACTTTGCAAGTTGTCTTGGA---TGCGCTGATATGATATATGCA---AGTCG--TTAGTTTATAT---GCTTGTAA---GC--ATTA--TTTACAAA-TAAATCTCTGAAATT-GTTTTCTTGCAG-GTCATTATACAGTTCACACTGA
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TCCTTAAAAAG--GCGATAT--GTTCTCAGTTTTAATATTCTT------TGA-ACGTCTTCTGACC----AGACATTAGAATA--ATA----GTT-TACTAG--T---A-ATCCATGTG-CTTGTGATAAGTCAATAAT-TGTTCTGTTTTC---GTAATTT-G-CGGAT---AACCCTAGCATAGACATAAC-GTG-TTTAATATCAT-GTG-ACCAATTATTTTTGCA-C--ATTAAATAGTCG-GAATTTAACAC--TTTTTTGT-AATCCGTCTGTCATCCATCAAAATCACTCTGTTCCA-CATACGCAACATGTTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccttaaaaaggcgatatgttctcagttttaatattctttgaacgtcttctgaccagacattagaataatagtttactagtaatccatgtgcttgtgataagtcaataattgttctgttttcgtaatttgcggataaccctagcatagacataacgtgtttaatatcatgtgaccaattatttttgcacattaaatagtcggaatttaacacttttttgtaatccgtctgtcatccatcaaaatcactctgttccacatacgcaacatgttt
gi|5                          :                                                                           gtttattattgtgacatgtgcatacattcattaagttatacatatatacaattaacaaaattatttggcacccggcccattgggcctatatgtcaccaggataatcaagaaagtaattatatacaaaattcgtaaatactctattatatacataagttaaatatgacgtacaaaatcctgacaaaatattagtaaaatattcactgagtatccagtattgtcagtatggagtgtagttataaatataataggaaaacaggcaatatatcatacatcaacaatacatgatgtattaagtttgacataatattttacgaaaacaagatatttcttctttttaagaaagcacagagaagaaactttgcaagttgtcttggatgcgctgatatgatatatgcaagtcgttagtttatatgcttgtaagcattatttacaaataaatctctgaaattgttttcttgcaggtcattatacagttcacactgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATGGAAAGTGTGTGACAAGATTTCATCTTCAATCTGAAGTAGATT-ACAAAGTGTG---AGTCTTTGCTCTCG--TTGCTCACCGACATATCGTCGCGTTTCAACTC-TTTGA-GGTAGAATACCACATCTAAATTGGGTCAACAATGAACGTTCCTG--T-TTGT-TAA-ATTTTAAAACCATATATTGTTCAAGTTCAAATTTATTTTTAAA--A--GTAACATAAGTCTGCAATTTAGGCATC--T------TGCTACTTCTACCTTCC----AGATATTTGAGTA--GTATTTCGTTATCTTAG--TCTTA-A-CAATGT--CT----ATGTGT--ATAAC-AGTTTTGTTTTCAAAATAGTTC-ATCAGATTTAAAT-------TGGACAAAACTGT--TTTCAGATCATTGT--ACCAATTATGTTTACA-C--TTGTTATAGTTC-ATGTTAAAGAC-ACGCCTGGT-TAGCCTATTGTCATCAAACAATACAAGTCTGTTCCAGTAT-CGTATCATTGCTACCCAACGGCGATAACAACTAGGAAGCCATCCCGCACATGCGGTGATTGCAAGTTTCGGGGC------AAATCTGTGTACGCCAAGAAAGTACCGTAAAGCACGATTCTGTACATTGTC---TG---------GTAATGTTTGAATCCCCATACTGATGCACAGTAGTCCAATATTGGTACAAAACACGATTCAAATA-GTCTTTTGGTAG--TTTAATATCTTTTCCAAG-GTATAAGTCATTTAT
gi|6                          :                                                                                                ttattatagtgatatgtgtacAGATAAG---ATACTGTTTATTATT-GTGACATGCG-----ACAT-TCAT-TATGT----------TGTACA--T-A------TATA-CAACT---G--ATA-AA----TAT--A--TGG--CA-----CCCAGCCCA-TTGGGCTAATATGCCACC----A-GATTAAT-CAAGAAAG---TAAT----TATAT------AGA--TGATTCGTGAATAC-TGCTATGATAT-----A-CA--T--ATGTTAACTTTTAAGTACATGTACGTA---AAT--GCTGACAAAATATTAGC-AAAATATT-TCTGTGTATTTAAT-ATTGGTAGTATGGACGATAGTTATTGTA-ATTTTTTTTATAAATATA-ATAAGAAT-ATTGACAATAGATCATACATCAACAAAACATGAACTATAAAGTCTGACGTAATAGTTTACAAAAACATCACATTTCTCCTTTTTATGAAAGCACAGACAAACAA------AGGTTTTCTCGGA---TGCGCTGATATGATATGTGAA---AGTCG--GT-GTTTATAT---GCATGTTA---GCAAATTAATCTTA-AAA-T--ATCTAT---ATA-GTTt
gi|7                          :                                                                                                         tATA---AGAGAAGAGAA----ATATTGTTTA-TATTCGT--TATGT-TAT--ACAT-AC----AAAT----------TAT-CA--T-A------CAT---AATT---G--ACA-AAAT--TAT--A--TGG--CA-----CCCGGACCATTTGAATTTATATGCCACC----A-GGTTATT-CAAGAGAG---TAATAAACTATAT------ATA--CCATTCGTAAATAC-TGTTAGTATATAGTTAA-CT--T--A-TTTAACTATGAAGTTCA-------A---ACT--CCTGACTAAGTATTTGCAAAAATATTCCCTGTGTATTTGAC-ATTGTTTGTATGAACGGTAATTATGGTAAA--TTTGTTATAAATACA-ATAAGACT-ACTTGCAATAGTTCATACATCAACAATACA----GTA-------TGACATAATAGTTGACGAAGACAAGATATTACATCTTTTTAAGAAAGCACAGACAAGACATTTTGCAAGTTTTCTTGGA---TGCGCCGATATAATCTGTGAG---ACTC---CTGGTTTATATGTAGCATGTTA---GC--AATA--TCTACAAA-TAAATCTCTGAAATA-GTTTTCTCGCAG-GCCATTATACAGTTCACACTGAAATAGGAAGCGC-T-------TCGTATCTTCggcaaacgccattttctgtttcgttgactgcaattagtatttgccttactaagttctatatctgaccctgaaaagtgcaca
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TACTTCTTCTTCTCATGTAAGCATATACAATATATTTAGCTACTTTTCTGGGAACGTGTG-TGACAAGAAATACACATTTAGCCATACTA-TCCATAC----CAT-TAAACTGC--AT-A--TTTGAAAA-TTGTTCATTCAAAAT-GTCTGCT-GTAATATCATTGTAAAATGTACATTAGATCAAAAAATGA-T-------TTTCATCTTCAATCTGAAGTAGATT-ACAAATTGTGCAGAGTCTTTGCTCTCG--CGGCTCACCGACATATCGTCCCGTTTCTATTC-TTAGT-GGTAA--------------ATTGGGCCAACAATGAACGTTCCTG--T-TTGC-TCA-AATTTAAAAGCACATATTGTTCGAATTCAAATTTATCTTTAAA-AGTTAC-ATAA--GTCCGTAATTTAGGCACTCTTACTACATAA-AC--CTTC----C----AGATATTTGAGTA--GTA----TTC-CGTTAGCTT---A-GTCTAAACAATTT-TTATGTGT--ATAAC-AGTTTTGTTTTCAAAATAGTTT-ATCAGAT------TCGAAT-TGGACATAAC--TGTTTTCAGATCAC-TAC-ACCAATTACTTTttgtactcaaatatcagacaa
gi|9                          :                                                                                                        AAATAAGTAAGTAAG-TAAGTAAATATT--TTATTAAA-GTGACATGTGCAT--ACA----ATATATGT----------TACAAA--T-AGTTG--TATA-CAA--------ACA-AAA----AC--A---AG--CA-----CCCGGCCCA-TTGGACCTATAAGTCACC----
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): ATTTGTAAGTAAGTATGTAAGTAAGTTTTTATTATAAAAACGTGTGTAAATTTATAACATAATATGTTAATATGCAGTTTTTACAGAACACAATCGGCCCAATGGACCTAGTCACATATATAAATAT
Unaligned ( gi|27 ): AATACTTCTTCATGTGTTAATAATATTTAAAAAAAATATACAAATTGTTTAAAAAATGTGTCATGTGATAACAATATTGGATGTATTTTAAGTACGTTAAAAGGACGTGGCTAACTGTTTTA
Unaligned ( gi|28 ): TAAGTATGTAGATATTGACATGTGCATGACAATACAATAACATGCAAAATGATATGTGGAGCACTAAGGCCTAACAGGCATATAATAATTCGCTACCAAAAAACAAAAATGTCATTCCAT
Unaligned ( gi|29 ): TAAGGTGACAGGTACACATGTAACATGACATATATTTGGAACACACACACGATGGAACCATAACAGATACTATCTTAGACAAGCATCATTAAATCATTCATTATGGTTAGACACTAAA
Unaligned ( gi|33 ): ACCTTCCAGATATTTGAGTAATAGTCCGTTATCTTGGTCTTAACGATATCTATGTGTATAACAGATTTGTTTTCAAAAAAGTTTATCAGATT
Unaligned ( gi|36 ): GTCACTTCCAATAAATAGAAGTAATATGAAATTCATATGATAATAATCAACATAATAGACTATTGTAGGTACACATTTGCAT






Alignments
lowQualScore                  :                                                                                                             111            111                                                                   111111                                                                                                                         111               11        11111                            11111111111                                                                           1111                                                                                                                                                                                                                                                                                                   1111111            1                                                                                                                            222                                                      1  11                              111111                 1111                  2222   1         111          11  3333      11                  222       111     2222222222222          11111          111111                                            11                                                                                                                            222222                                                   222222222222                                                                   1  1        222            222   1    11         
lowQualScore                  :                                                                                                             111       0    000               2          1  44   333   3  1 88888888888      22 1 999999    1     555555   1   777   666666  22  44444         33          1      555555      44        444    5555     888888   000             3 33        22222 3  6666666           1     33333333333   55                 4             1         4                1           1111 2             4   0    5          1                      0      0  1             3                                                                 888                   1 888     66  0        888        777  66  1 66        4  0    0      55            5              0                   5 6666666 4        1 1            7            0        1  1  77      0  2                 0    5 1  88     4      55  0       22   0 22  1       222 8    5   5    7777 1   1  1 1   333      1  3        1  55  6   888    1      1     1   666666   5  4     0 5  2222       1     77   0000   1      77 000 5 1      22  1111   3  55     5    1       888       444     4444444444444          11111     1    111111                6 99  3         6           22        6       1                            6   3                                                     3                    333333   1     1                3  1   1               0 555555555555              1           1 0         1     1       1      1 4 1 1 0  0    0 1 555      1     000   5    88  22     
lowQualScore                  :                                                                                                             ...       .    ...               .          .  ..   ...   .  . ...........      .. . ......    .     ......   .   ...   ......  ..  .....         ..          .      ......      ..        ...    ....     ......   ...             . ..        ..... .  .......           .     ...........   ..                 .             .         .                .           .... .             .   .    .          .                      .      .  .             .                                                                 ...                   . ...     ..  .        ...        ...  ..  . ..        .  .    .      ..            .              .                   . ....... .        . .            .            .        .  .  ..      .  .                 .    . .  ..     .      ..  .       ..   . ..  .       ... .    .   .    .... .   .  . .   ...      .  .        .  ..  .   ...    .      .     .   ......   .  .     . .  ....       .     ..   ....   .      .. ... . .      ..  ....   .  ..     .    .       ...       ...     .............          .....     .    ......                . ..  .         .           ..        .       .                            .   .                                                     .                    ......   .     .                .  .   .               . ............              .           . .         .     .       .      . . . . .  .    . . ...      .     ...   .    ..  ..     
lowQualScore                  :                                                                                                             888       8    000               0          5  55   777   8  0 77777777777      55 8 333333    8     000000   7   888   222222  44  33333         88          0      555555      22        777    7777     888888   222             6 99        77777 6  7777777           9     44444444444   55                 0             0         4                9           2222 3             4   2    7          3                      2      1  4             2                                                                 888                   0 888     99  2        888        888  11  9 11        4  8    1      44            0              2                   0 2222222 2        0 4            9            3        6  0  99      7  7                 8    0 0  66     2      22  1       00   2 00  1       999 9    7   7    1111 0   4  0 0   888      0  7        4  77  6   444    3      0     0   444444   7  3     1 1  1111       0     99   0000   4      99 000 7 4      33  3333   0  00     7    7       444       000     7777777777777          88888     0    444444                7 22  2         7           77        7       0                            7   2                                                     8                    000000   0     4                2  4   4               8 000000000000              4           0 6         0     0       0      0 2 0 2 0  0    2 0 000      0     555   5    55  00     
consensus                     :                                    NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCAAATA--TAGATAAGATAAG---ATATTGTTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TANGT----------TATACA--T-A------TATA-CAATT---G--ACA-AAAT--TAT--A--TGG--CA-----CCCGGCCCA-TTGGGCCTATANGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--NAATTCGTAAATAC-TGCTATTATAT-----A-CA--T--AGGTTAACTATGACGTACA-------A---AAT--CCTGACAAAATATTAGT-AAAATATTCCCTGNGTATCCAAT-ATTGTCAGTATGGAGTGTAGTTATGATAGA--TATGTTATAAATACA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGAGGTATTAAGTCTGACATAATAGTTTACGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGACAAGAAACTTTGCAAGTTGTCTTGGA---TGCGCTGATATGATATGTGNA---AGTCG--CTGGTTTATAT---GCATGTAA---GC--ATTA--TTTACAAA-TAAATCTCTGAAATN-GTTTTCTCGCAG-GTCATTATACAGTTCACACTGAAATAGAAAGTGT-T-------TCTCATCTTCNA-CTGAATTTGACTGACAAAGTCTACAAAGTCTCTGATCNGG--TTGCTCCCCGACATACCTTCCGGTTTCAATTC-TNAGT-GGTAAGATACCACNTCTAAATTGGNNCAACANNGAGCGTTCATG--TCTTGT-TTA-AGTTTATCANAACGTANTNCTCGCGTTCAAANTTTTCCTTAAACAG--GCGATAT--GTCCTCAGTTTNGACATNCTT------TGA-ACGTCTTCTGACC----AGACATTNGAGTA--ATA----GTT-TACTAG--T---A-ATCCATGTG-CTT-TGATGNGTCAATAAC-TGTTCTGTTTTCAAAGTAGTTT-G-CGGAT---AACCCCAGCATAGACATAAC-GTG-TTTAANATCAC-GTG-ACCAATTATTTTTGCA-C--TTTAAATAGTCG-GAATTAAACAC-TTTTTTTGT-AATCCGTCTGTCATCCATCAAAATCACTCTGTTCCA-CATACGCAACATGTTTCCCCATCGTCTGTAAACACTTGGTATCCACCCGGTATCCCCAATCATCGCGAGAATTGGCGT------GAANCGATGAACGCCAAGAAAGTATCGTATAGCTCGATTCTGAACGTTGTC---TGTA-TGT-TGATACTGTTTGAATCCCCATACTGANGAACAATAGTCNAGGATNGGCACAANACACGANTCGNATA-GT-TTTTCGNAG--TTTAATNTCTTTTCCAAGAGTATAAGTNNTTTAT
Reference ( family-717 )      :                                    NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCAAATA--TAGATAAGATAAG---ATATTGTTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TANGT----------TATACA--T-A------TATA-CAATT---G--ACA-AAAT--TAT--A--TGG--CA-----CCCGGCCCA-TTGGGCCTATANGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--NAATTCGTAAATAC-TGCTATTATAT-----A-CA--T--AGGTTAACTATGACGTACA-------A---AAT--CCTGACAAAATATTAGT-AAAATATTCCCTGNGTATCCAAT-ATTGTCAGTATGGAGTGTAGTTATGATAGA--TATGTTATAAATACA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGAGGTATTAAGTCTGACATAATAGTTTACGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGACAAGAAACTTTGCAAGTTGTCTTGGA---TGCGCTGATATGATATGTGNA---AGTCG--CTGGTTTATAT---GCATGTAA---GC--ATTA--TTTACAAA-TAAATCTCTGAAATN-GTTTTCTCGCAG-GTCATTATACAGTTCACACTGAAATAGAAAGTGT-T-------TCTCATCTTCNA-CTGAATTTGACTGACAAAGTCTACAAAGTCTCTGATCNGG--TTGCTCCCCGACATACCTTCCGGTTTCAATTC-TNAGT-GGTAAGATACCACNTCTAAATTGGNNCAACANNGAGCGTTCATG--TCTTGT-TTA-AGTTTATCANAACGTANTNCTCGCGTTCAAANTTTTCCTTAAACAG--GCGATAT--GTCCTCAGTTTNGACATNCTT------TGA-ACGTCTTCTGACC----AGACATTNGAGTA--ATA----GTT-TACTAG--T---A-ATCCATGTG-CTT-TGATGNGTCAATAAC-TGTTCTGTTTTCAAAGTAGTTT-G-CGGAT---AACCCCAGCATAGACATAAC-GTG-TTTAANATCAC-GTG-ACCAATTATTTTTGCA-C--TTTAAATAGTCG-GAATTAAACAC-TTTTTTTGT-AATCCGTCTGTCATCCATCAAAATCACTCTGTTCCA-CATACGCAACATGTTTCCCCATCGTCTGTAAACACTTGGTATCCACCCGGTATCCCCAATCATCGCGAGAATTGGCGT------GAANCGATGAACGCCAAGAAAGTATCGTATAGCTCGATTCTGAACGTTGTC---TGTA-TGT-TGATACTGTTTGAATCCCCATACTGANGAACAATAGTCNAGGATNGGCACAANACACGANTCGNATA-GT-TTTTCGNAG--TTTAATNTCTTTTCCAAGAGTATAAGTNNTTTAT
gi|1                          :                                                                                                     TCCAAATA--TAGATAAGATTAG---ATATTGTTTATTATT-GTGACATGTGCAT--ACTT-TCTT-CAAGT----------TATACA--T-A------GATA-CAATT---G--ACA-CAAT--TAT--T--TGG--CA-----CCAGACCCT-TTGGGCCTATATGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--AAATTCGTAAATAC-T-TTATTATAT-----A-CA--T--TGGTTAACTATGACGTACA-------A---CAT--CCTGACAAAATATTGGT-AAAATGTTCCCTGAGTATCCAAT-ATTGTCAGTATGGAGTGTAGTTATGATAAG--TTTGTTATAAATATA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGAGGTATTAAGTATGACATAATAGTTTACGAAAACAAGATATTTCTTCTTTTTAAGGAAGCACAGACAAGAAACTTTGCAAGTTGTCTTGGA---TGCGCTGATATGATAGGTGGA---AGTCG--CTGGTTTATAT---GAATGTAA---GC--ATTA--TTTACAAA-TAATTCTCTGAAATA-GTTTTCTCGCAG-GTTATTATACAG-------TGAAATAGAAAGTGT-T-------TTTCATCTTCTA-CTAAATTTGACTGACAAAGTCTACAAAGTCTCTGATCAGG--TTGCTCCCCAACATACCTTCCGGTTTCAATTC-TGAGT-GGTAAGATACCAGTTCTGAATTGACACAATACAGAGCGTTCA----TTTTGT-TTA-AGTTTATCATAACATAGTCCTCACATTTAAATTTTTCCTTAAACAG--GCGATAT--ATTCTCAGTTTTGATATACTT------TGA-ACGTCTTCTGACC----AGACATTAGAATA--ATA----GTT-TACTAG--T---A-ATCCATGTG-CTTGTGATAAGTCAATGAT-TGTTCTGTTTTC---GTAATTT-G-CAGAT---AACCCCAGCATACACATAAC-GTG-TTTAATATCAT-GTG-ACTAATTATTTTTGTA-T--TTTAAAAAGTCG-AAAGTAAACACTTTTTTTTGT-AATCCGCCTGTCATCCATCAAAATCACTTTGTTCCA-CATACGCAACATGTTTCCCCATCGTCTGTAAACACTTGGTATCCACCCGATGTCCCCAATCATCGCAAGAATTGGCGT------GAAGAGATGAACACCAATACAGTATCTTATGGCTCTTTTCTGAACATTATC---TTTA-TGT-TGATACTTCTTGAATCTCCACACTGAGGAGCAATAGTCAAGGATAGGCACAACACATGATGTGTACA-GT-TTTTCGTAGGATTTGAACTCTTT---AAGAGTAT--GTATTTTAT
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  tgattatgtctattgattatgtcattaacaagcgatcttgctttctgcctaaatggtcatccgtgTACACATCAC-ATG-CATAATGTCAA-AAG-TCCAGTTATTTGTACAGCGGTT---ATAATCATGCAT-AAATAC-TTTCTTTGTCAGTCTAT-TATTATCCATGATAATAAGTCCATTCCA-AAACCGTAACATCCATGTCCATCGTCTGTACACGCTTGGTATCCAGCCAGTATCACC------CACGAGAGCTGATGTCGGCCCAAACCTACGTACGCCAAGGAAATAACGCATAGCTCGATTTTGGACGTTGTCAATCGT----T-TGAAACTGTCTATATCCCCATACTGATGCACAGTAGTCTAGGATCGGCACAACACACGAATTGTAAA-GT-TTTTCAAActataattccaccaagtgcacggcctgctgctttcccgagcgattcactagtgtacattaagtggttcttttcatggaaaataacccctagatatttgtata
gi|11                         :                                                                                                     cgagttTA--TAGATGAGATAAG---ATATTGTTTATCATT-GTGACATGTGCAT--ACAT-TCAT-TAAGT----------TATACA--T-A------TATA-CAATT---G--ACA-AAAT--CAT--T--TGG--CA-----CCCGGCCAT-TTCGGCCTATATGTCACC----A-GGATAAT----GAAAG---TAAT----TATAT------ACA--CAATTCGTAAATAC-T-CTATTATAT-----A-CA--T--AGGTTAACTATGATGTACA-------A---AAT--CCTGACAAAATATTGGT-AAAATATTCCCTGAGTATCCAAT-ATTGTCAGTATGGAGTGTAGTTATGATAGA--TATGTTATAAATATATATAcgaacggaggatgtatttctttgttacttcttt
gi|12                         :                                                                                                        tgtaaaagtGATAAGATACG---ATATTGTTTATTATT-GTGACATGTGCAT--ACAT-TAAT-TATGT----------CGTACA--T-A------TATA-CAATT---G--ACA-AAGT--TAT--T--TGA--CA-----CCCTGCCCA-TTGGTCCAGTTTGTCATC----A-GGTTAAA-CAAGAAAG---TATT----TATAT------ACA--CAGTTCACAAGTAC-TGCTATTGTAT-----A-CA--T--AGGCTAACTATGAAGCATA-------A---AAT--GCTGACAAAATATTAGT-AAAATATTCCCTGTGTGTATAATAATTTT---TAT--AGT-TCG-TGTGAGCGAT-TATGTTATAAATACA-CTA--AAATGCAGGCAGTAGATCAAACCTTATCAATACATGAAGTATTAAATCTGACATAATAATGTGCGAAAACAtatccaatcatggttccaatatttaacatattaaactaatttgataaaaatatgataatt
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GTTTCTACTC-TTAA--ACTAGAATACCACCTCTAAACTGGGTCAACAACAAACGTTCATGTTTCTTCTCTTAGAGGT----AGAATACATTGTTCAAGTTCAAAA-----AGTGAAAAGTTAC-ATAA--ATCCGCAATTTAGACACTCAT------TTA-----CTTCTG-CCTTCAAGTTGTTTGAGTAGCATATC--GTTATCTTAG--T---ATAGTGATGT--CT----ATGTGT--ATAACATATT-TGTTTTCAAAATAGTTTAA-CAGATTGAAAT-------TGGACGTGAC--TGTTTTCAAATCAC--TGCACCAATTATTTT
gi|14                         :                                                                                                                ctATAAG-TAAGT--AAATAGTTTATAATA-GTGGCATGTGCAT--GG----CAG-TACA------------ATA-A--T-A------TATG-CA-TT---G---CA-AAAT--GAT--AAATAG--TAGATGACCCGGCCCA-GTGGGCCTACAAGTCAC
gi|14                         :                                                                                                                                                                                                                         CA-ATAG--TAG--A--TG----A-----CCCGGCCCA-GTGGGCCTATAAGTCACT----GCGAATAA------ATAG---AAGT----CATAT------GCA--tgccaataaatagaagtggtatgcaatagtagatgacccggcccagtgggcctataagtcactgcgaataaatagaagtcatatgcaatttcatttgataataagcaatgggacataaataggataatgtaggtaaactttcaaaggcacaaatgtaggtaaa
gi|15                         : ataagtaagtaaatagtttataatagtggcatgtgcatggcagtacaataatatatgcattgcaaaatgataaatagtagatgacccggcccagtgggcctacaagtcactgccaataaatagaagtggtatgTTATTAAA-GTGACATGTG--T--ACAT-GTAA-CATG--------------ACA--T-A------TATA-TAATTTTAA--ACA-ACA----------------CA-----CCCGGCCCA-ATGGACCTATAAGTCACC-------TATA---CAAATAAA---CAAT----TATATTATTTCACATGAAATT-----ATGCTTGTTATTAAAC-----ACCA--TAAAAATGAATAAT-ATGTACA-------AGGTAATTACATAACAACATATTAAT-atttcatttgataataagcaatgggacataaataggataatgtaggtaaactttcaaaggcacaaatgtaggtaaa
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        aTTTTTTCTTTTTAAGAAAGCACAGACAAGATACTTTGCAAGATGTCTTGGA---TGCGCTGATATGATATGTGCA---AGTCG--TTGATTTATAT---GCTTGTAA---GC--ATTA--TTTACAAA--AAATCTCTGAAATT-GTTTTCTCGCAG-GTCATTATACAGTTCACACTGAAATAGAAAGTGT-T-------TTTCATCTACTA-CTGAATTTGACTGACAAAGTCTACAAAGTCTCTGATCAAG--TTGCTCCCCAACATACCTTCCGGTTTCAATTtacgattgtttgaaaagtcattggttatataatgtatttcttcttctcatgtaagccttaacaatatatttagctacttttct
gi|17                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TAA---AC--AT-A--TCAGCAAAGTA--TCT-TGAAACACATTTTCTCTGAT-ATTATTGTAAAGTCCACAATGTAACAGAAAATGT-T-------TCTCGTCTTCAA-CGGATCCTGTGTCACAGAATCTTCATAGTCTCTGTTCTGGAGTT--TCACCAATATACCTTCCAGTCTCTATTCTTAAATAGGTAAAATGCCACACCTAAATTGACACATAATAGATCTCTCGT---TTTTCT-TTA-AATTGGTTACACCATACT
gi|18                         :                                                                                                                                          TAGT-GGGACATCTG--T--ACAT-GTAT-CATGA----------CATACA--T-A------TACAGTATTT---GTAACA-ACA----------------CG-----CCGGGCCGA-GTGGAGCTATAAGTCACCTATAA-AGATAA------ATAG---TTAT----TAT-T------ACAT-TAAT--GTAATTA-----TATTATTTG----A-CA--T--Ag
gi|19                         :                                                                                                              aagtaagtaagtagtaagtaagtgagtcagta-GTGACATGTGCATCGACATATCAA-TAAA------------ACTCA----A------TAAA-CAATA---A--AAG-AGAC--TGA--A----G--CG-----TCCGGCCAA-ATGAACCTATAAGTCACT----ATGGACAATACAAAAtaagcatgtttgcaattaaacatcatcaaacaatccaattgaatggttgcatgcatgttttaaaa
gi|2                          :                                                                                                 caaaTTCAAACA--T---TAAGATAAG---ATATTGTTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TAAGC----------TATACA--T-A------TATA-CAACT---G--ACA-CACT--TAT--T--TGG--CA-----CCCGGTTCA-TTGGGCCTATATGTCAAT----A-GGATAAT-ATAGAAAG---TAAT----TATAT------ACA--AAATTCGTATATAC-TG-TATAATAT-----A-CA------GGTTAACTATGACATACA-------C---AGT--CCTGACAAAATATAAGC-AAAATATTCCCGGAGTATCCAAT-ATTGTCAGTATTGAGTCTAGTTATGATAGA--TATGATATAAATACA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGAGGTATTAAGTCTGACATAATAGTTGGCGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGATAAGAAACTTTGCAAGTTGTCTTGAA---TCCGCTGACATGATATGTGGA---AGTCG--CTGGTTTATAT---ACATGTAA---GC--ATTA--TCTACAAA-TAAATCTCTGAAATT-GTTTTCTCGCAG-GTCATTATACAGTTTACACTGAAATAGAAAGTGT-T-------TCTCATTTTCTA-CTGAGTTTAACTGACAAAGTCTACAAAGTCTCTAATTAGG--TTGTTCCCATATAAATCTTCCGGTTTCAATTC-TCAGT-GGTAAGATACCAGTTC-----TGACAAAATACAGAGCATGCAT---TCTTAT-TTA-AGTTCATCATAACGTAGTCCTCGCATTTGATGTGTTTCTTAAACAG--GCGATAT--GTTCTCTGATTTGATATACTT------TGA-ACGTCTTCTGACC----AGACATTAGAATT--ATA----ATT-CACTAG--T---A-ATCCATGTG-CTTATGATGAGTCAATTAT-TGTTCTGTTTTC---GTAATTT-G-CGGAT---TACCCCAGCGCAGACATTAC-GGG-TTTAAAATCAT-GTG-ACCAATTATTTTTGCA-C--ATTAAATAATCG-AAATTAAACAC-CTTTTTCGT-AATCAGTCTGTCATCCATCAAAACCACTTTGTGACC-CATATGCAACATGTTTCCCCATCGTCTGCAAACACTTGGTATCCACCCGGTATCCCCAATCATCTCGAAAATTGGCGT------GAAACGATGAAcatcatatttaaaacatgacatcatcggttttgacgatattaaattctatttaatatacaaaaatgttatgctatatgtaaacgtgtcttttaacaaataatactgataactttaattatactgtt
gi|20                         :                                                                            caattatacattctattttttatgtacgtcacatattcttatttgttaaaattattatTTATTATA-GTGACATGTGCA---A-AT-GCAT-AACAT----------TATATA--T-AAA----TATG-CAATT---A--ACACAGA----AC--A-------CA-----CCCGGCCCA-ATGGACCTTTAAGTCACC----ta
gi|21                         :                                                                                                                 GATAAGATCAA---TTATTGTTTATTATT-GTGACATGTGCAC--ACAT-TCAT-CATGTTATATATATATATATA--T-A------TATA-CAATT---G--ACA-AAAG--TTT--A--TGG--CA--------------------CTTATATGTCGCC----A-AGATAAT-CAAGAAAGTTATAAT----TAT---------------ATTC-TAA------GGTATTATTT-----A-CAGTT--A--TTAACTtatatgaatgtacatacacatataccctaatgtactatatattaagcatgcttgaaataatacatgtttgattacaattcgatataacagtttgtgcatttcgtctgtttgaaactggtt
gi|22                         :                                                                                                                AGATATGATAAG---ATATTGTTTATCATT-GTGACATATGCAT--ACAT-TCAT-TATTT----------TATGCG--T-ATATTATTATA-CAGTT---G--ACA-AAAT--TAT--A--TGG--TA-----ACTGGCCCATTTGGGTTTATATGTCACC----A-GGGTCAT-CAAGAAAC---TAAG----TA
gi|23                         :                                                                                                                                TATTGTTTATCATT-GTAACAT-------------TCAC-TATGT----------TAAACA--T-AATTA--TATA-CAATT---G--ACA-AAAT--TAT--A--TGG--CA-----TCCGA-CCA-TTGGGCCTTTATGCCACC----A-GCATATG-TAAAAGGA---CATT----TATAT------
gi|24                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GCCAAGAAAGTATCATAAAGCACGATGTTGAATGTTG-----TGTATTGTCTGACGCTGTATGAAACCTTATACGGCAGAACAACGGTCTAATATTGGAATGAGGCCTGAATGAAATATAT-TATTTGAA---TCCAATGTCTTTgaatatcccctttcaatattg
gi|25                         :                                                                                                                           t---ATATT--TTATTAAT-GTGACATGTGCATG-ATAT-ACAT-GACAA----------TA-ACA--C-G-------ATA-CAAAT---A--AGA-AAATAATAA--A--TAT--CA-----CCTGGTCCA-CTGCGCTTTTCGGTCAT---------ATAAT-TATGGAA----TAGT----T
gi|3                          :                                                                                                                                gtaagtaaatacTT-GTGACATGTGCGT--ACAT-TTAT-TAAGT----------TATACA--T-A------TACA-CAATT---G--ACA-AAAT--TAT--T--TGG--CA-----CCCGGCACA-TTGGGCCTATATGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--AAATTCGTAAATAC-T-CTATTATAT-----A-CA--T--AGGTTAACTATGACGTACA-------A---AAT--CCTGACAAAATATTAGT-AAAATATTCCCTGTGTATCCAAT-ATTGTCAGCATGGAGTATAGT-ATGATAGA--TATGTTATACATATA-ATAGGAAA-ACAGGCAATATATCATAAATCAATACTACATGAGGTATTA-------------------CGAAAACAAGGTATTTCTTCTTTTTAAGAAAACACAGACAAGAAACTTTGCAAGTTGTCTTAGA---TGCGCTGATATGATATGTGCT---AGTCG--TTGGTTTACAT---GTATGTAA---AC--ATTA--TTTACAAA-TAAATCTCTGGAATT-GTTTTCTCGCAG-GTCATTACACAGTTAACACTGAAATAGAAAGTGT-T-------T-TCATCTTCTA-CTGAATTTGACTGACAAAGTCTACAAAGTCACTGATCAGG--TTGCTCCCCAACATACCTTCCGGTTTCAATTC-TGAGT-GGCAAGATACTAGTTCTAAATTGACACAAAACAGAGCGTCCAT---TCTTGT-TTA-AGTTCATCATAATGTAATCCTCACATTTAAAATTTTCCTTAAACAG--GCGATGC--GTTCTCAGTTTTGATATACTT------TGA-ACGTCTTCTGACC----AGACATTAGAATA--ATA----GTT-TACTAG--T---A-ATCCATGTG-CTT-------GTTAATAAT-TGTTCTGTTTTC---GTGATTT-G-CGGAT---AACCCCAGCATAGACATAAC-ATG-TTTAATATCAT-GTG-ACCAATTATTTTTGCA-C--TTTAAATAGTCG-GAATTAAACAC-TTTTTTTGT-AATCCATCTGTACTCAATCAAAATCACTCTATTTGA-CATACGCAACATGTTTCCCCATCGTCTGTAAACACTTGGTATCCACCCGGTGTCCCCAACCATCGCGAGAATTGGCGT------GAAGCGATGAACACCAAGAAAGTATCTCATGGCTCTATTCTGAACATTATC---TATA-TGT-TGATACTTCTTGATACACCACACTGAGGAGGAATAGTCGAGGATGGGCACAATACA
gi|30                         :                                                                                                                                                                         ATGT----------TATACA--TTA------TGTA-CAATT---T--ACA-AAAT--TGT--A--TGG--CA-----CCCAGCCCA-TTGGGCCTCTATGTCACC----
gi|31                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  acaacaatacttacaacattgtgtttataaatggtaaaaaatgctttgCATCAACAATATATCAGGTATTAAGTCTGATATAATAGTTAACGAAAACAAGACATTTCTTCTTTTTAAGAAAGCAGAGACAAGAAAC
gi|32                         :                                                                                                                                                                                                                                                                                                                                                                                         GTACA-------A---AAT--CCTGATAAAATATTAGT-AAAATATTCACTGTGTATTTAAT-ATTGTCAGTATGGACGGTAATTTTGTTAAG--AATGTTATAAATACA-ATAGAAgtgtttaattgtt
gi|34                         :                                                                                                                                  TTGTGTATTAAA-GTGACATGTG--T--GCA----AC-AAAAT----------TATA-G--T-A------ATTA-C-ATT-------CA-AATT--TATCAA--TGGCACA-----CCCGACCAG-ATGGACCTA
gi|35                         :                                                                                                                                                     TGTGCAT--ACA----ATGTATAT----------TACAAA--T-AGTTA--TATA-CAA--------AAA-AAA----AA--A--AG------------CGGCCCA-TTGGACCTATAAGTCACC----aatc
gi|37                         :                                                                                                                                     TTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TAAGT----------TATACAATT-G------TAT--TTATT---G----A-AAAT--CAT--taaactattaggtat
gi|38                         :                                                                                                                                                                                                                                            G--CA-----CCCGGCCCA-TTGGACCTATAAGTCACC----t
gi|39                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              aaaaaacaaTC-TTAGA-GGTAGAATACCACATCTAAATTGGGCCAACAATGAACGTtaaactgttaggtataaactg
gi|4                          :                                                                                                                                    GTTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TAAGT----------TATACA--T-A------TATA-CAATT---A--ACA-AAAT--TAT--T--TGG--CA-----CCCGGCCCA-TTGGGCCTATATGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--AAATTCGTAAATAC-T-CTATTATAT-----A-CA--T--AAGTTAAATATGACGTACA-------A---AAT--CCTGACAAAATATTAGT-AAAATATTCACTGAGTATCCAGT-ATTGTCAGTATGGAGTGTAGTTAT----------------AAATATA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGATGTATTAAGTTTGACATAATATTTTACGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGAGAAGAAACTTTGCAAGTTGTCTTGGA---TGCGCTGATATGATATATGCA---AGTCG--TTAGTTTATAT---GCTTGTAA---GC--ATTA--TTTACAAA-TAAATCTCTGAAATT-GTTTTCTTGCAG-GTCATTATACAGTTCACACTGA
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TCCTTAAAAAG--GCGATAT--GTTCTCAGTTTTAATATTCTT------TGA-ACGTCTTCTGACC----AGACATTAGAATA--ATA----GTT-TACTAG--T---A-ATCCATGTG-CTTGTGATAAGTCAATAAT-TGTTCTGTTTTC---GTAATTT-G-CGGAT---AACCCTAGCATAGACATAAC-GTG-TTTAATATCAT-GTG-ACCAATTATTTTTGCA-C--ATTAAATAGTCG-GAATTTAACAC--TTTTTTGT-AATCCGTCTGTCATCCATCAAAATCACTCTGTTCCA-CATACGCAACATGTTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccttaaaaaggcgatatgttctcagttttaatattctttgaacgtcttctgaccagacattagaataatagtttactagtaatccatgtgcttgtgataagtcaataattgttctgttttcgtaatttgcggataaccctagcatagacataacgtgtttaatatcatgtgaccaattatttttgcacattaaatagtcggaatttaacacttttttgtaatccgtctgtcatccatcaaaatcactctgttccacatacgcaacatgttt
gi|5                          :                                                                           gtttattattgtgacatgtgcatacattcattaagttatacatatatacaattaacaaaattatttggcacccggcccattgggcctatatgtcaccaggataatcaagaaagtaattatatacaaaattcgtaaatactctattatatacataagttaaatatgacgtacaaaatcctgacaaaatattagtaaaatattcactgagtatccagtattgtcagtatggagtgtagttataaatataataggaaaacaggcaatatatcatacatcaacaatacatgatgtattaagtttgacataatattttacgaaaacaagatatttcttctttttaagaaagcacagagaagaaactttgcaagttgtcttggatgcgctgatatgatatatgcaagtcgttagtttatatgcttgtaagcattatttacaaataaatctctgaaattgttttcttgcaggtcattatacagttcacactgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATGGAAAGTGTGTGACAAGATTTCATCTTCAATCTGAAGTAGATT-ACAAAGTGTG---AGTCTTTGCTCTCG--TTGCTCACCGACATATCGTCGCGTTTCAACTC-TTTGA-GGTAGAATACCACATCTAAATTGGGTCAACAATGAACGTTCCTG--T-TTGT-TAA-ATTTTAAAACCATATATTGTTCAAGTTCAAATTTATTTTTAAA--A--GTAACATAAGTCTGCAATTTAGGCATC--T------TGCTACTTCTACCTTCC----AGATATTTGAGTA--GTATTTCGTTATCTTAG--TCTTA-A-CAATGT--CT----ATGTGT--ATAAC-AGTTTTGTTTTCAAAATAGTTC-ATCAGATTTAAAT-------TGGACAAAACTGT--TTTCAGATCATTGT--ACCAATTATGTTTACA-C--TTGTTATAGTTC-ATGTTAAAGAC-ACGCCTGGT-TAGCCTATTGTCATCAAACAATACAAGTCTGTTCCAGTAT-CGTATCATTGCTACCCAACGGCGATAACAACTAGGAAGCCATCCCGCACATGCGGTGATTGCAAGTTTCGGGGC------AAATCTGTGTACGCCAAGAAAGTACCGTAAAGCACGATTCTGTACATTGTC---TG---------GTAATGTTTGAATCCCCATACTGATGCACAGTAGTCCAATATTGGTACAAAACACGATTCAAATA-GTCTTTTGGTAG--TTTAATATCTTTTCCAAG-GTATAAGTCATTTAT
gi|6                          :                                                                                                ttattatagtgatatgtgtacAGATAAG---ATACTGTTTATTATT-GTGACATGCG-----ACAT-TCAT-TATGT----------TGTACA--T-A------TATA-CAACT---G--ATA-AA----TAT--A--TGG--CA-----CCCAGCCCA-TTGGGCTAATATGCCACC----A-GATTAAT-CAAGAAAG---TAAT----TATAT------AGA--TGATTCGTGAATAC-TGCTATGATAT-----A-CA--T--ATGTTAACTTTTAAGTACATGTACGTA---AAT--GCTGACAAAATATTAGC-AAAATATT-TCTGTGTATTTAAT-ATTGGTAGTATGGACGATAGTTATTGTA-ATTTTTTTTATAAATATA-ATAAGAAT-ATTGACAATAGATCATACATCAACAAAACATGAACTATAAAGTCTGACGTAATAGTTTACAAAAACATCACATTTCTCCTTTTTATGAAAGCACAGACAAACAA------AGGTTTTCTCGGA---TGCGCTGATATGATATGTGAA---AGTCG--GT-GTTTATAT---GCATGTTA---GCAAATTAATCTTA-AAA-T--ATCTAT---ATA-GTTt
gi|7                          :                                                                                                         tATA---AGAGAAGAGAA----ATATTGTTTA-TATTCGT--TATGT-TAT--ACAT-AC----AAAT----------TAT-CA--T-A------CAT---AATT---G--ACA-AAAT--TAT--A--TGG--CA-----CCCGGACCATTTGAATTTATATGCCACC----A-GGTTATT-CAAGAGAG---TAATAAACTATAT------ATA--CCATTCGTAAATAC-TGTTAGTATATAGTTAA-CT--T--A-TTTAACTATGAAGTTCA-------A---ACT--CCTGACTAAGTATTTGCAAAAATATTCCCTGTGTATTTGAC-ATTGTTTGTATGAACGGTAATTATGGTAAA--TTTGTTATAAATACA-ATAAGACT-ACTTGCAATAGTTCATACATCAACAATACA----GTA-------TGACATAATAGTTGACGAAGACAAGATATTACATCTTTTTAAGAAAGCACAGACAAGACATTTTGCAAGTTTTCTTGGA---TGCGCCGATATAATCTGTGAG---ACTC---CTGGTTTATATGTAGCATGTTA---GC--AATA--TCTACAAA-TAAATCTCTGAAATA-GTTTTCTCGCAG-GCCATTATACAGTTCACACTGAAATAGGAAGCGC-T-------TCGTATCTTCggcaaacgccattttctgtttcgttgactgcaattagtatttgccttactaagttctatatctgaccctgaaaagtgcaca
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TACTTCTTCTTCTCATGTAAGCATATACAATATATTTAGCTACTTTTCTGGGAACGTGTG-TGACAAGAAATACACATTTAGCCATACTA-TCCATAC----CAT-TAAACTGC--AT-A--TTTGAAAA-TTGTTCATTCAAAAT-GTCTGCT-GTAATATCATTGTAAAATGTACATTAGATCAAAAAATGA-T-------TTTCATCTTCAATCTGAAGTAGATT-ACAAATTGTGCAGAGTCTTTGCTCTCG--CGGCTCACCGACATATCGTCCCGTTTCTATTC-TTAGT-GGTAA--------------ATTGGGCCAACAATGAACGTTCCTG--T-TTGC-TCA-AATTTAAAAGCACATATTGTTCGAATTCAAATTTATCTTTAAA-AGTTAC-ATAA--GTCCGTAATTTAGGCACTCTTACTACATAA-AC--CTTC----C----AGATATTTGAGTA--GTA----TTC-CGTTAGCTT---A-GTCTAAACAATTT-TTATGTGT--ATAAC-AGTTTTGTTTTCAAAATAGTTT-ATCAGAT------TCGAAT-TGGACATAAC--TGTTTTCAGATCAC-TAC-ACCAATTACTTTttgtactcaaatatcagacaa
gi|9                          :                                                                                                        AAATAAGTAAGTAAG-TAAGTAAATATT--TTATTAAA-GTGACATGTGCAT--ACA----ATATATGT----------TACAAA--T-AGTTG--TATA-CAA--------ACA-AAA----AC--A---AG--CA-----CCCGGCCCA-TTGGACCTATAAGTCACC----


blockSeqs                     :                                                                                                             AGT            TAA               C          C  CG   TAT   G  A TTATATATATA      AT T TATTAT    G     TTAA     C   TAA   AAAT    CA  GATGA         TT          T      TATAA       TA        TTA    AAAC     TATTTC   TGA             T GC        AGTTA C  TAAAA             T     TGTACGTA      TA                 A             A         A                G           GAT  A             T        T          G                                C             T                                                                 ACG                   C TTT     TA           GTA        ACT  AA  T AT        G              AC            T                                  G GACAAGA T        T T            G                     A  A  AG         A                      T T  TA     A      CC          GT     AC  A       GTT C    C   G    GGTT G   A  T G   AAG      A  T        A  TT  G   TAA    G      A     T   ACTACA   T  G       A  TTCA       T     GC   TTTC   A      CT CTT T G      AA  TATG   T  CA     A    C       AAA       AA      TACCCCAGCG             ATG       T    AAAG                  G GG  T         T           T         C       C                            G   C                                                     A                    CGGCCC   C     T                G  T   T                 TGTATTGTC                 T           T           T     C       C      A T T A T  C      A G        G     TCC   .    AA  CA
blockSeqs                     :                                                                                                             T              T                 .          C  G    TT    A  T T                .  . ATTA      .     GTA      .   T     CAAT    .   .             TT          T      GC          T         .      .        .        TT              . GT        G     .  GTTA              A     AGGT          .                  .             T         .                C           ATT  A             .        .          T                                C             G                                                                 .                     G .       .            .          .    .   T .         .              T             .                                  . .       C        A T            C                     T  T  .          A                      . A  T      A      CA          CA     TA  T       G   T    .   .    CATC C   A  C C   GCA      G  T        C  TT  G   A      T      T     A   .        .  G       A  .          A     .    TC     A      .  .   . T      G   TGTG   A  TA     .    C       AAA       AT      AACCCCAGCA             TGT       A    CTGC                  . .   T         .           C         .       C                            .   A                                                     A                    .        A     A                A  A   A                 AATCGTT                   A           A           T     T       G      A G A T .  .      A .        A                      
blockSeqs                     :                                                                                                             T              .                 .          C  .    TT    .  C T                .  . GTTA      .     G        .   T     TT      .   .             T           A      AT          A         .      .        .        C               . GG        .     .  TAG               T     A             .                  .             A         .                A           GA   A             .        .          T                                C             A                                                                 .                     C .       .            .          .    .   T .         .              T             .                                  . .       C        T .            G                     A  A  .          T                      . C  T      G      GT          CA     CA  G       G   C    .   .    CATC T   G  G C   ACA      A  A        C  .   G   T      T      T     A   .        .  G       A  .          A     .    .      .      .  .   . T      G   TTT    A  CA     .    C       AAA       AT      AACCCTAGCA             GGG       A    TGTG                  . .   T         .           T         .       C                            .   A                                                     G                    .        G     A                T  T   T                 TATATGT                   A           G           G     G       T      T C A T .  .      T                                 
blockSeqs                     :                                                                                                             .              .                 .          C  .    TG    .  T A                .  . GTTG      .     G        .   T     TT      .   .             T           A      A           T         .      .        .        C               . GC        .     .  TAG               C     A             .                  .             T         .                G           GA   A             .        .          T                                T             T                                                                 .                     C .       .            .          .    .   T .         .              T             .                                  . .       T        T .            G                     A  A  .          A                      . G  A      G      GT          CA     CA  G       .   C    .   .    TAAA T   G  A G   AAG      T  A        A  .   A   C      T      T     T   .        .  T       T  .          A     .    .      .      .  .   . T      G   T      T  .      .    T       .         G       TGAAAT                 ATG       T    TGTG                  . .   G         .           A         .       T                            .   A                                                     .                    .        T     T                G  A   A                 TG                        T           T           C     T       A                                                          
blockSeqs                     :                                                                                                                            .                 .          C  .    TG    .  T C                .  . AA        .     G        .   G     AT      .   .             G           A      A           T         .      .        .        A               . GT        .     .  TAG               C     C             .                  .             T         .                G           GA   A             .        .          G                                C             T                                                                 .                     A .       .            .          .    .   T .         .              T             .                                  . .       C        A .            .                     C  T  .          G                      . T  A      A      CA          GC     AT  A       .   .    .   .    TAAA C   A  T G   GAA      T  .        .  .   .   T      G      A     C   .        .  .       .  .          T     .    .      .      .  .   . T      .   .      T  .      .    T       .         G       TTAAAT                 GTG       T    TGTG                  . .   .         .           .         .       .                            .   .                                                                                                                                                                                                                                                              
blockSeqs                     :                                                                                                                            .                 .          C  .    TT    .  A T                .  . .         .     A        .   C     TT      .   .             G           A      A           T         .      .        .        A               . C         .     .  TAA               C     A             .                  .             A         .                A           AG   T             .        .          G                                .             G                                                                 .                     A .       .            .          .    .   T .         .              A             .                                  . .       T        A .            .                     C  T  .          G                      . T  T      A      CA          GT     AT  A       .   .    .   .    .    G   A  T                          .  .   .   A      G      A     T   .        .  .       .  .          T     .    .      .      .  .   . .      .   .      .  .      .    .       .         G       TCGAAT                 TGT       G    TTGT                                                                                                                                                                                                                                                                                                                                                                
blockSeqs                     :                                                                                                                            .                 .          C  .    TG    .  A T                .  . .         .     G        .   T     AT      .   .             A           A      A           G         .      .        .        A               . G         .     .  TAT               A     A             .                  .             T         .                G           AA   T             .                                                    .             .                                                                 .                     C .       .            .          .    .   . .         .              A             .                                  . .       .                                                                                     . T  .      .      .           GC     AT  A                                                                                                                                                                                                                                                         TGT       G    CTAC                                                                                                                                                                                                                                                                                                                                                                
blockSeqs                     :                                                                                                                            .                 .          C  .    TT    .  C T                .  . .         .     A        .   G     AT      .   .             G           T      A           T         .      .        .        T               . C         .     .  TA                A     A             .                  .             T         .                .           .    .             .                                                                                                                                                                                            .    .   . .         .              T                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
blockSeqs                     :                                                                                                                            .                 .          C  .    TT    .  T A                .  . .         .     G        .   T     AT      .   .             A           A      A           T         .      .        .        C               . C         .     .  G                       A             .                  .                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
blockSeqs                     :                                                                                                                            .                 .          C  .    TA    .  T T                .  . .         .     G        .   T     AT      .   .             T           T      A           T         .      .        .        .               . .         .     .                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
blockSeqs                     :                                                                                                                                              .          C  .    TT    .  T T                .  . .         .     G        .   T     TT      .   .             A           T      A           T         .      .        .                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
blockSeqs                     :                                                                                                                                              .          C  .    TT    .  C T                .  . .         .     A        .   T     AT      .   .             T           T      A           T         .      .        .                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
blockSeqs                     :                                                                                                                                              .          C  .    TT    .  A T                .  . .         .     G        .   T     AA      .   .             C           G      A           .         .      .                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
blockSeqs                     :                                                                                                                                              .          T  .    TT    .  T T                .  . .         .     T        .   T     TT      .   .             T           T      .           .         .      .                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
blockSeqs                     :                                                                                                                                              .          C  .    TA    .  A T                .  . .         .     G        .   T     AT      .   .             T           T      .           .                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
blockSeqs                     :                                                                                                                                              .          .  .    T     .  T T                .  . .         .     A        .   T     AT      .   .             A           A                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
blockSeqs                     :                                                                                                                                              .          .  .    .     .  A T                .  . .         .     G        .   .     A       .   .             T           A                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
blockSeqs                     :                                                                                                                                              .          .  .    .     .  A T                .  . .         .     G        .   .     A       .   .             T           T                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
blockSeqs                     :                                                                                                                                              .          .  .    .     .  T .                .  . .         .     .        .   .     A       .   .             T           T                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
blockSeqs                     :                                                                                                                                                         .  .    .     .  A .                .  . .         .     .        .   .     .       .   .             T           T                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
blockSeqs                     :                                                                                                                                                                          T .                .  . .         .     .        .   .     .       .   .             T           A                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
blockSeqs                     :                                                                                                                                                                                                                           .   .             .   .             .                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                


blockSeqCons                  :                                                                                                                                                                                                                                                                                                                                                   GC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           A*                  AAA       G**                                                                                             T*
originalCons                  :                                    NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCAAATA--TAGATAAGATAAG---ATATTGTTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TANGT----------TATACA--T-A------TATA-CAATT---G--ACA-AAAT--TAT--A--TGG--CA-----CCCGGCCCA-TTGGGCCTATANGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--NAATTCGTAAATAC-TGCTATTATAT-----A-CA--T--AGGTTAACTATGACGTACA-------A---AAT--CCTGACAAAATATTAGT-AAAATATTCCCTGNGTATCCAAT-ATTGTCAGTATGGAGTGTAGTTATGATAGA--TATGTTATAAATACA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGAGGTATTAAGTCTGACATAATAGTTTACGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGACAAGAAACTTTGCAAGTTGTCTTGGA---TGCGCTGATATGATATGTGNA---AGTCG--CTGGTTTATAT---GCATGTAA---GC--ATTA--TTTACAAA-TAAATCTCTGAAATN-GTTTTCTCGCAG-GTCATTATACAGTTCACACTGAAATAGAAAGTGT-T-------TCTCATCTTCNA-CTGAATTTGACTGACAAAGTCTACAAAGTCTCTGATCNGG--TTGCTCCCCGACATACCTTCCGGTTTCAATTC-TNAGT-GGTAAGATACCACNTCTAAATTGGNNCAACANNGAGCGTTCATG--TCTTGT-TTA-AGTTTATCANAACGTANTNCTCGCGTTCAAANTTTTCCTTAAACAG--GCGATAT--GTCCTCAGTTTNGACATNCTT------TGA-ACGTCTTCTGACC----AGACATTNGAGTA--ATA----GTT-TACTAG--T---A-ATCCATGTG-CTT-TGATGNGTCAATAAC-TGTTCTGTTTTCAAAGTAGTTT-G-CGGAT---AACCCCAGCATAGACATAAC-GTG-TTTAANATCAC-GTG-ACCAATTATTTTTGCA-C--TTTAAATAGTCG-GAATTAAACAC-TTTTTTTGT-AATCCGTCTGTCATCCATCAAAATCACTCTGTTCCA-CATACGCAACATGTTTCCCCATCGTCTGTAAACACTTGGTATCCACCCGGTATCCCCAATCATCGCGAGAATTGGCGT------GAANCGATGAACGCCAAGAAAGTATCGTATAGCTCGATTCTGAACGTTGTC---TGTA-TGT-TGATACTGTTTGAATCCCCATACTGANGAACAATAGTCNAGGATNGGCACAANACACGANTCGNATA-GT-TTTTCGNAG--TTTAATNTCTTTTCCAAGAGTATAAGTNNTTTAT
finalCons                     :                                    NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCAAATA--TAGATAAGATAAG---ATATTGTTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TANGT----------TATACA--T-A------TATA-CAATT---G--ACA-AAAT--TAT--A--TGG--CA-----CCCGGCCCA-TTGGGCCTATANGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--NAATTCGTAAATAC-TGCTATTATAT-----A-CA--T--AGGTTAACTATGACGTACA-------A---AAT--CCTGACAAAATATTAGT-AAAATATTCCCTGNGTATCCAAT-ATTGTCAGTATGGAGTGTAGTTATGATAGA--TATGTTATAAATACA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGAGGTATTAAGTCTGACATAATAGTTTACGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGACAAGAAACTTTGCAAGTTGTCTTGGA---TGCGCTGATATGATATGTGNA---AGTCG--CTGGTTTATAT---GCATGTAA---GC--ATTA--TTTACAAA-TAAATCTCTGAAATN-GTTTTCTCGCAG-GTCATTATACAGTTCACACTGAAATAGAAAGTGT-T-------TCTCATCTTCNA-CTGAATTTGACTGACAAAGTCTACAAAGTCTCTGATCNGG--TTGCTCCCCGACATACCTTCCGGTTTCAATTC-TNAGT-GGTAAGATACCACNTCTAAATTGGNNCAACANNGAGCGTTCATG--TCTTGT-TTA-AGTTTATCANAACGTANTNCTCGCGTTCAAANTTTTCCTTAAACAG--GCGATAT--GTCCTCAGTTTNGACATNCTT------TGA-ACGTCTTCTGACC----AGACATTNGAGTA--ATA----GTT-TACTAG--T---A-ATCCATGTG-CTT-TGATGNGTA-ATAAC-TGTTCTGTTTTCAAAGTAGTTTG--CGGAT---AACCCCAGCATAGACATAAC-GTG-TTTAANATCAC-GTG-ACCAATTATTTTTGCA-C--TTTAAATAGTCG-GAATTAAACACT-TTTTTTGT-AATCCGTCTGTCATCCATCAAAATCACTCTGTTCCA-CATACGCAACATGTTTCCCCATCGTCTGTAAACACTTGGTATCCACCCGGTATCCCCAATCATCGCGAGAATTGGCGT------GAANCGATGAACGCCAAGAAAGTATCGTATAGCTCGATTCTGAACGTTGTC---TGTA-TGT-TGATACTGTTTGAATCCCCATACTGANGAACAATAGTCNAGGATNGGCACAANACACGANTCGNATA-GT-TTTTCGNAG--TTTAATNTCTTTTCCAAGAGTATAAGTNNTTTAT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): ATTTGTAAGTAAGTATGTAAGTAAGTTTTTATTATAAAAACGTGTGTAAATTTATAACATAATATGTTAATATGCAGTTTTTACAGAACACAATCGGCCCAATGGACCTAGTCACATATATAAATAT
Unaligned ( gi|27 ): AATACTTCTTCATGTGTTAATAATATTTAAAAAAAATATACAAATTGTTTAAAAAATGTGTCATGTGATAACAATATTGGATGTATTTTAAGTACGTTAAAAGGACGTGGCTAACTGTTTTA
Unaligned ( gi|28 ): TAAGTATGTAGATATTGACATGTGCATGACAATACAATAACATGCAAAATGATATGTGGAGCACTAAGGCCTAACAGGCATATAATAATTCGCTACCAAAAAACAAAAATGTCATTCCAT
Unaligned ( gi|29 ): TAAGGTGACAGGTACACATGTAACATGACATATATTTGGAACACACACACGATGGAACCATAACAGATACTATCTTAGACAAGCATCATTAAATCATTCATTATGGTTAGACACTAAA
Unaligned ( gi|33 ): ACCTTCCAGATATTTGAGTAATAGTCCGTTATCTTGGTCTTAACGATATCTATGTGTATAACAGATTTGTTTTCAAAAAAGTTTATCAGATT
Unaligned ( gi|36 ): GTCACTTCCAATAAATAGAAGTAATATGAAATTCATATGATAATAATCAACATAATAGACTATTGTAGGTACACATTTGCAT






Alignments
lowQualScore                  :                                                                                                             111            111                                                                   111111                                                                                                                          111               11          11111                          11111111111                                                                           1111                                                                                                                                                                                                                                                                                                   1111111            1                                                                                                                            222                                                      1  22  1                         111111                 1111                  1111  11111       2222           11  3333      22                  222       111     2222222222222          1  1          11111                                            11                                                                                                                            222222                                                   333333333333                                                                   1  1        222            222   1    11         
lowQualScore                  :                                                                                                             111       0    000               2          1  44   333   3  1 88888888888      22 1 999999    1     555555   1   777   666666  22  44444         22 1         1      555555      44        444    5555     888888   000             3 33        3 22222  55555 3           1     33333333333   55                     4         1         4                1           1111 2             4   0    5          1                      0    0 0  1             3                                                                 888                   1 888     66  0        888        777  66  1 66        4  0    0      55            5              0                   5 6666666 4        1 1            7            0        1  1  77      0  2                 0    5 1  88     4      55  0       22   0 22  1       222 8    5   5    7777 1   1  1 1   333      1  3        1  33  1   4    1      1     1   666666   5  4     0 5  0000       1     66   7777  11111  5    6666  5 6 1    55  6666   1  44     55   2       111       888     2222222222222          2  5     1    11111                6 99  3         6           22        6       1                            2   6                                                     3                    333333   1     1                3  1   1               0 444444444444              1           1 0         1     1       1      1 4 1 1 0  0    0 1 555      1     000   5    88  22     
lowQualScore                  :                                                                                                             ...       .    ...               .          .  ..   ...   .  . ...........      .. . ......    .     ......   .   ...   ......  ..  .....         .. .         .      ......      ..        ...    ....     ......   ...             . ..        . .....  ..... .           .     ...........   ..                     .         .         .                .           .... .             .   .    .          .                      .    . .  .             .                                                                 ...                   . ...     ..  .        ...        ...  ..  . ..        .  .    .      ..            .              .                   . ....... .        . .            .            .        .  .  ..      .  .                 .    . .  ..     .      ..  .       ..   . ..  .       ... .    .   .    .... .   .  . .   ...      .  .        .  ..  .   .    .      .     .   ......   .  .     . .  ....       .     ..   ....  .....  .    ....  . . .    ..  ....   .  ..     ..   .       ...       ...     .............          .  .     .    .....                . ..  .         .           ..        .       .                            .   .                                                     .                    ......   .     .                .  .   .               . ............              .           . .         .     .       .      . . . . .  .    . . ...      .     ...   .    ..  ..     
lowQualScore                  :                                                                                                             888       8    000               0          5  55   777   8  0 77777777777      55 8 333333    8     000000   7   888   222222  44  33333         11 7         0      555555      22        777    7777     888888   222             6 99        6 77777  55555 2           9     44444444444   55                     4         0         4                9           2222 3             4   2    7          3                      2    4 1  4             2                                                                 888                   0 888     99  2        888        888  11  9 11        4  8    1      44            0              2                   0 2222222 2        0 4            9            3        6  0  99      7  7                 8    0 0  66     2      22  1       00   2 00  1       999 9    7   7    1111 0   4  0 0   888      0  7        4  66  4   3    3      0     0   444444   7  3     1 1  6666       0     99   5555  66666  0    2222  0 2 4    88  1111   0  44     88   2       555       000     2222222222222          8  0     0    44444                7 22  2         7           77        7       0                            5   7                                                     8                    000000   0     4                2  4   4               8 888888888888              4           0 6         0     0       0      0 2 0 2 0  0    2 0 000      0     555   5    55  00     
consensus                     :                                    NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCAAATA--TAGATAAGATAAG---ATATTGTTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TANGT----------TATACA--T-A------TATA-CAATT---G--ACA-AAAT--TAT--A--TGG--CA-----CCCGGCCCA-TT-GGGCCTATANGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--NAATTCGTAAATAC-TGCTATTATAT-A-----CA--T--AGGTTAACTATGACGTACA-------A---AAT--CCTGACAAAATATTAGTAAAA-TATTCCCTGNGTATCCAAT-ATTGTCAGTATGGAGTGTAGTTATGATAGA--TATGTTATAAATACA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGAGGTATTAAGTCTGACATAATAGTTTACGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGACAAGAAACTTTGCAAGTTGTCTTGGA---TGCGCTGATATGATATGTGNA---AGTCG--CTGGTTTATAT---GCATGTAA---GC--ATTA--TTTACAAA-TAAATCTCTGAAATN-GTTTTCTCGCAG-GTCATTATACAGTTCACACTGAAATAGAAAGTGT-T-------TCTCATCTTCNA-CTGAATTTGACTGACAAAGTCTACAAAGTCTCTGATCNGG--TTGCTCCCCGACATACCTTCCGGTTTCAATTC-TNAGT-GGTAAGATACCACNTCTAAATTGGNNCAACANNGAGCGTTCATG--TCTTGT-TTA-AGTTTATCANAACGTANTNCTCGCGTTCAAANTTTTCCTTAAACAGT-GCGATANGTCCTCAGTTTNGACATNCTT------TGA-ACGTCTTCTGACC----AGACATTNGAGTA--ATA----GT---T-TA-CTAG----TA-ATCCATGTG-CTT-TGATGTGTCAATAAC-TGTTCTGTTTTCAAAGTAGTTT-GTCGGAT---AACCCCAGCATAGACATAACGTGTTTTAANATCACGTG-ACCAATTATTTTTGCA-C--TTTAAATAGTCG-GAATTAAACAC-TTTTTTTGT-AATCCGTCTGTCATCCATCAAAATCACTCTGTTCCACATA-CGCAACATGTTTCCCCATCGTCTGTAAACACTTGGTATCCACCCGGTATCCCCAATCATCGCGAGAATTGGCGT------GAANCGATGAACGCCAAGAAAGTATCGTATAGCTCGATTCTGAACGTTGTC---TGTA-TGT-TGATACTGTTTGAATCCCCATACTGANGAACAATAGTCNAGGATNGGCACAANACACGANTCGNATA-GT-TTTTCGNAG--TTTAATNTCTTTTCCAAGAGTATAAGTNNTTTAT
Reference ( family-717 )      :                                    NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCAAATA--TAGATAAGATAAG---ATATTGTTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TANGT----------TATACA--T-A------TATA-CAATT---G--ACA-AAAT--TAT--A--TGG--CA-----CCCGGCCCA-TT-GGGCCTATANGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--NAATTCGTAAATAC-TGCTATTATAT-A-----CA--T--AGGTTAACTATGACGTACA-------A---AAT--CCTGACAAAATATTAGTAAAA-TATTCCCTGNGTATCCAAT-ATTGTCAGTATGGAGTGTAGTTATGATAGA--TATGTTATAAATACA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGAGGTATTAAGTCTGACATAATAGTTTACGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGACAAGAAACTTTGCAAGTTGTCTTGGA---TGCGCTGATATGATATGTGNA---AGTCG--CTGGTTTATAT---GCATGTAA---GC--ATTA--TTTACAAA-TAAATCTCTGAAATN-GTTTTCTCGCAG-GTCATTATACAGTTCACACTGAAATAGAAAGTGT-T-------TCTCATCTTCNA-CTGAATTTGACTGACAAAGTCTACAAAGTCTCTGATCNGG--TTGCTCCCCGACATACCTTCCGGTTTCAATTC-TNAGT-GGTAAGATACCACNTCTAAATTGGNNCAACANNGAGCGTTCATG--TCTTGT-TTA-AGTTTATCANAACGTANTNCTCGCGTTCAAANTTTTCCTTAAACAG--GCGATATGTCCTCAGTTTNGACATNCTT------TGA-ACGTCTTCTGACC----AGACATTNGAGTA--ATA----GT---T-TA-CTAG----TA-ATCCATGTG-CTT-TGATGNGT-AATAAC-TGTTCTGTTTTCAAAGTAGTTT-G-CGGAT---AACCCCAGCATAGACATAACGTG-TTTAANATCACGTG-ACCAATTATTTTTGCA-C--TTTAAATAGTCG-GAATTAAACAC-TTTTTTTGT-AATCCGTCTGTCATCCATCAAAATCACTCTGTTCCACATA-CGCAACATGTTTCCCCATCGTCTGTAAACACTTGGTATCCACCCGGTATCCCCAATCATCGCGAGAATTGGCGT------GAANCGATGAACGCCAAGAAAGTATCGTATAGCTCGATTCTGAACGTTGTC---TGTA-TGT-TGATACTGTTTGAATCCCCATACTGANGAACAATAGTCNAGGATNGGCACAANACACGANTCGNATA-GT-TTTTCGNAG--TTTAATNTCTTTTCCAAGAGTATAAGTNNTTTAT
gi|1                          :                                                                                                     TCCAAATA--TAGATAAGATTAG---ATATTGTTTATTATT-GTGACATGTGCAT--ACTT-TCTT-CAAGT----------TATACA--T-A------GATA-CAATT---G--ACA-CAAT--TAT--T--TGG--CA-----CCAGACCCT-TT-GGGCCTATATGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--AAATTCGTAAATAC-T-TTATTATAT-A-----CA--T--TGGTTAACTATGACGTACA-------A---CAT--CCTGACAAAATATTGGTAAAA-TGTTCCCTGAGTATCCAAT-ATTGTCAGTATGGAGTGTAGTTATGATAAG--TTTGTTATAAATATA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGAGGTATTAAGTATGACATAATAGTTTACGAAAACAAGATATTTCTTCTTTTTAAGGAAGCACAGACAAGAAACTTTGCAAGTTGTCTTGGA---TGCGCTGATATGATAGGTGGA---AGTCG--CTGGTTTATAT---GAATGTAA---GC--ATTA--TTTACAAA-TAATTCTCTGAAATA-GTTTTCTCGCAG-GTTATTATACAG-------TGAAATAGAAAGTGT-T-------TTTCATCTTCTA-CTAAATTTGACTGACAAAGTCTACAAAGTCTCTGATCAGG--TTGCTCCCCAACATACCTTCCGGTTTCAATTC-TGAGT-GGTAAGATACCAGTTCTGAATTGACACAATACAGAGCGTTCA----TTTTGT-TTA-AGTTTATCATAACATAGTCCTCACATTTAAATTTTTCCTTAAACAG--GCGATATATTCTCAGTTTTGATATACTT------TGA-ACGTCTTCTGACC----AGACATTAGAATA--ATA----GT---T-TA-CTAG----TA-ATCCATGTG-CTTGTGATAAGTCAATGAT-TGTTCTGTTTTC---GTAATTT-G-CAGAT---AACCCCAGCATACACATAACGTG-TTTAATATCATGTG-ACTAATTATTTTTGTA-T--TTTAAAAAGTCG-AAAGTAAACACTTTTTTTTGT-AATCCGCCTGTCATCCATCAAAATCACTTTGTTCCACATA-CGCAACATGTTTCCCCATCGTCTGTAAACACTTGGTATCCACCCGATGTCCCCAATCATCGCAAGAATTGGCGT------GAAGAGATGAACACCAATACAGTATCTTATGGCTCTTTTCTGAACATTATC---TTTA-TGT-TGATACTTCTTGAATCTCCACACTGAGGAGCAATAGTCAAGGATAGGCACAACACATGATGTGTACA-GT-TTTTCGTAGGATTTGAACTCTTT---AAGAGTAT--GTATTTTAT
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    tgattatgtctattgattatgtcattaacaagcgatcttgctttctgcctaaatggtcatccgtgTACACATCACATG-CATAATGTCAAAAG-TCCAGTTATTTGTACAGCGGTT---ATAATCATGCAT-AAATAC-TTTCTTTGTCAGTCTAT-TATTATCCATGATAATAAGTCCATTCCAAAAC-CGTAACATCCATGTCCATCGTCTGTACACGCTTGGTATCCAGCCAGTATCACC------CACGAGAGCTGATGTCGGCCCAAACCTACGTACGCCAAGGAAATAACGCATAGCTCGATTTTGGACGTTGTCAATCGT----T-TGAAACTGTCTATATCCCCATACTGATGCACAGTAGTCTAGGATCGGCACAACACACGAATTGTAAA-GT-TTTTCAAActataattccaccaagtgcacggcctgctgctttcccgagcgattcactagtgtacattaagtggttcttttcatggaaaataacccctagatatttgtata
gi|11                         :                                                                                                     cgagttTA--TAGATGAGATAAG---ATATTGTTTATCATT-GTGACATGTGCAT--ACAT-TCAT-TAAGT----------TATACA--T-A------TATA-CAATT---G--ACA-AAAT--CAT--T--TGG--CA-----CCCGGCCAT-TT-CGGCCTATATGTCACC----A-GGATAAT----GAAAG---TAAT----TATAT------ACA--CAATTCGTAAATAC-T-CTATTATAT-A-----CA--T--AGGTTAACTATGATGTACA-------A---AAT--CCTGACAAAATATTGGTAAAA-TATTCCCTGAGTATCCAAT-ATTGTCAGTATGGAGTGTAGTTATGATAGA--TATGTTATAAATATATATAcgaacggaggatgtatttctttgttacttcttt
gi|12                         :                                                                                                        tgtaaaagtGATAAGATACG---ATATTGTTTATTATT-GTGACATGTGCAT--ACAT-TAAT-TATGT----------CGTACA--T-A------TATA-CAATT---G--ACA-AAGT--TAT--T--TGA--CA-----CCCTGCCCA-TT-GGTCCAGTTTGTCATC----A-GGTTAAA-CAAGAAAG---TATT----TATAT------ACA--CAGTTCACAAGTAC-TGCTATTGTAT-A-----CA--T--AGGCTAACTATGAAGCATA-------A---AAT--GCTGACAAAATATTAGTAAAA-TATTCCCTGTGTGTATAATAATTTT---TAT--AGT-TCG-TGTGAGCGAT-TATGTTATAAATACA-CTA--AAATGCAGGCAGTAGATCAAACCTTATCAATACATGAAGTATTAAATCTGACATAATAATGTGCGAAAACAtatccaatcatggttccaatatttaacatattaaactaatttgataaaaatatgataatt
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GTTTCTACTC-TTAA--ACTAGAATACCACCTCTAAACTGGGTCAACAACAAACGTTCATGTTTCTTCTCTTAGAGGT----AGAATACATTGTTCAAGTTCAAAA-----AGTGAAAAGTTAC-ATAAATCCGCAATTTAGACACTCAT------TTA-----CTTCTG-CCTTCAAGTTGTTTGAGTAGCATATC--GT---TATC-TTAG----TATAGTGATGT--CT----ATGTGT--ATAACATATT-TGTTTTCAAAATAGTTTAA-CAGATTGAAAT-------TGGACGTGAC-TGTTTTCAAATCAC-TGCACCAATTATTTT
gi|14                         :                                                                                                                ctATAAG-TAAGT--AAATAGTTTATAATA-GTGGCATGTGCAT--GG----CAG-TACA------------ATA-A--T-A------TATG-CA-TT---G---CA-AAAT--GAT--AAATAG--TAGATGACCCGGCCCA-GT-GGGCCTACAAGTCAC
gi|14                         :                                                                                                                                                                                                                         CA-ATAG--TAG--A--TG----A-----CCCGGCCCA-GT-GGGCCTATAAGTCACT----GCGAATAA------ATAG---AAGT----CATAT------GCA--tgccaataaatagaagtggtatgcaatagtagatgacccggcccagtgggcctataagtcactgcgaataaatagaagtcatatgcaatttcatttgataataagcaatgggacataaataggataatgtaggtaaactttcaaaggcacaaatgtaggtaaa
gi|15                         : ataagtaagtaaatagtttataatagtggcatgtgcatggcagtacaataatatatgcattgcaaaatgataaatagtagatgacccggcccagtgggcctacaagtcactgccaataaatagaagtggtatgTTATTAAA-GTGACATGTG--T--ACAT-GTAA-CATG--------------ACA--T-A------TATA-TAATTTTAA--ACA-ACA----------------CA-----CCCGGCCCA-AT-GGACCTATAAGTCACC-------TATA---CAAATAAA---CAAT----TATATTATTTCACATGAAATT-----ATGCTTGTTATTAAAC-AC----CA--TAAAAATGAATAAT-ATGTACA-------AGGTAATTACATAACAACATATTAATatttcatttgataataagcaatgggacataaataggataatgtaggtaaactttcaaaggcacaaatgtaggtaaa
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         aTTTTTTCTTTTTAAGAAAGCACAGACAAGATACTTTGCAAGATGTCTTGGA---TGCGCTGATATGATATGTGCA---AGTCG--TTGATTTATAT---GCTTGTAA---GC--ATTA--TTTACAAA--AAATCTCTGAAATT-GTTTTCTCGCAG-GTCATTATACAGTTCACACTGAAATAGAAAGTGT-T-------TTTCATCTACTA-CTGAATTTGACTGACAAAGTCTACAAAGTCTCTGATCAAG--TTGCTCCCCAACATACCTTCCGGTTTCAATTtacgattgtttgaaaagtcattggttatataatgtatttcttcttctcatgtaagccttaacaatatatttagctacttttct
gi|17                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TAA---AC--AT-A--TCAGCAAAGTA--TCT-TGAAACACATTTTCTCTGAT-ATTATTGTAAAGTCCACAATGTAACAGAAAATGT-T-------TCTCGTCTTCAA-CGGATCCTGTGTCACAGAATCTTCATAGTCTCTGTTCTGGAGTT--TCACCAATATACCTTCCAGTCTCTATTCTTAAATAGGTAAAATGCCACACCTAAATTGACACATAATAGATCTCTCGT---TTTTCT-TTA-AATTGGTTACACCATACT
gi|18                         :                                                                                                                                          TAGT-GGGACATCTG--T--ACAT-GTAT-CATGA----------CATACA--T-A------TACAGTATTT---GTAACA-ACA----------------CG-----CCGGGCCGA-GT-GGAGCTATAAGTCACCTATAA-AGATAA------ATAG---TTAT----TAT-T------ACAT-TAAT--GTAATTA-----TATTATTTGA-----CA--T--Ag
gi|19                         :                                                                                                              aagtaagtaagtagtaagtaagtgagtcagta-GTGACATGTGCATCGACATATCAA-TAAA------------ACTCA----A------TAAA-CAATA---A--AAG-AGAC--TGA--A----G--CG-----TCCGGCCAA-AT-GAACCTATAAGTCACT----ATGGACAATACAAAAtaagcatgtttgcaattaaacatcatcaaacaatccaattgaatggttgcatgcatgttttaaaa
gi|2                          :                                                                                                 caaaTTCAAACA--T---TAAGATAAG---ATATTGTTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TAAGC----------TATACA--T-A------TATA-CAACT---G--ACA-CACT--TAT--T--TGG--CA-----CCCGGTTCA-TT-GGGCCTATATGTCAAT----A-GGATAAT-ATAGAAAG---TAAT----TATAT------ACA--AAATTCGTATATAC-TG-TATAATAT-A-----CA------GGTTAACTATGACATACA-------C---AGT--CCTGACAAAATATAAGCAAAA-TATTCCCGGAGTATCCAAT-ATTGTCAGTATTGAGTCTAGTTATGATAGA--TATGATATAAATACA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGAGGTATTAAGTCTGACATAATAGTTGGCGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGATAAGAAACTTTGCAAGTTGTCTTGAA---TCCGCTGACATGATATGTGGA---AGTCG--CTGGTTTATAT---ACATGTAA---GC--ATTA--TCTACAAA-TAAATCTCTGAAATT-GTTTTCTCGCAG-GTCATTATACAGTTTACACTGAAATAGAAAGTGT-T-------TCTCATTTTCTA-CTGAGTTTAACTGACAAAGTCTACAAAGTCTCTAATTAGG--TTGTTCCCATATAAATCTTCCGGTTTCAATTC-TCAGT-GGTAAGATACCAGTTC-----TGACAAAATACAGAGCATGCAT---TCTTAT-TTA-AGTTCATCATAACGTAGTCCTCGCATTTGATGTGTTTCTTAAACAG--GCGATATGTTCTCTGATTTGATATACTT------TGA-ACGTCTTCTGACC----AGACATTAGAATT--ATA----AT---T-CA-CTAG----TA-ATCCATGTG-CTTATGATGAGTCAATTAT-TGTTCTGTTTTC---GTAATTT-G-CGGAT---TACCCCAGCGCAGACATTACGGG-TTTAAAATCATGTG-ACCAATTATTTTTGCA-C--ATTAAATAATCG-AAATTAAACAC-CTTTTTCGT-AATCAGTCTGTCATCCATCAAAACCACTTTGTGACCCATA-TGCAACATGTTTCCCCATCGTCTGCAAACACTTGGTATCCACCCGGTATCCCCAATCATCTCGAAAATTGGCGT------GAAACGATGAAcatcatatttaaaacatgacatcatcggttttgacgatattaaattctatttaatatacaaaaatgttatgctatatgtaaacgtgtcttttaacaaataatactgataactttaattatactgtt
gi|20                         :                                                                            caattatacattctattttttatgtacgtcacatattcttatttgttaaaattattatTTATTATA-GTGACATGTGCA---A-AT-GCAT-AACAT----------TATATA--T-AAA----TATG-CAATT---A--ACACAGA----AC--A-------CA-----CCCGGCCCA-AT-GGACCTTTAAGTCACC----ta
gi|21                         :                                                                                                                 GATAAGATCAA---TTATTGTTTATTATT-GTGACATGTGCAC--ACAT-TCAT-CATGTTATATATATATATATA--T-A------TATA-CAATT---G--ACA-AAAG--TTT--A--TGG--CA---------------------CTTATATGTCGCC----A-AGATAAT-CAAGAAAGTTATAAT----TAT---------------ATTC-TAA------GGTATTATTT-A-----CAGTT--A--TTAACTtatatgaatgtacatacacatataccctaatgtactatatattaagcatgcttgaaataatacatgtttgattacaattcgatataacagtttgtgcatttcgtctgtttgaaactggtt
gi|22                         :                                                                                                                AGATATGATAAG---ATATTGTTTATCATT-GTGACATATGCAT--ACAT-TCAT-TATTT----------TATGCG--T-ATATTATTATA-CAGTT---G--ACA-AAAT--TAT--A--TGG--TA-----ACTGGCCCATTT-GGGTTTATATGTCACC----A-GGGTCAT-CAAGAAAC---TAAG----TA
gi|23                         :                                                                                                                                TATTGTTTATCATT-GTAACAT-------------TCAC-TATGT----------TAAACA--T-AATTA--TATA-CAATT---G--ACA-AAAT--TAT--A--TGG--CA-----TCCGA-CCA-TT-GGGCCTTTATGCCACC----A-GCATATG-TAAAAGGA---CATT----TATAT------
gi|24                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GCCAAGAAAGTATCATAAAGCACGATGTTGAATGTTG-----TGTATTGTCTGACGCTGTATGAAACCTTATACGGCAGAACAACGGTCTAATATTGGAATGAGGCCTGAATGAAATATAT-TATTTGAA---TCCAATGTCTTTgaatatcccctttcaatattg
gi|25                         :                                                                                                                           t---ATATT--TTATTAAT-GTGACATGTGCATG-ATAT-ACAT-GACAA----------TA-ACA--C-G-------ATA-CAAAT---A--AGA-AAATAATAA--A--TAT--CA-----CCTGGTCCA-CT-GCGCTTTTCGGTCAT---------ATAAT-TATGGAA----TAGT----T
gi|3                          :                                                                                                                                gtaagtaaatacTT-GTGACATGTGCGT--ACAT-TTAT-TAAGT----------TATACA--T-A------TACA-CAATT---G--ACA-AAAT--TAT--T--TGG--CA-----CCCGGCACA-TT-GGGCCTATATGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--AAATTCGTAAATAC-T-CTATTATAT-A-----CA--T--AGGTTAACTATGACGTACA-------A---AAT--CCTGACAAAATATTAGTAAAA-TATTCCCTGTGTATCCAAT-ATTGTCAGCATGGAGTATAGT-ATGATAGA--TATGTTATACATATA-ATAGGAAA-ACAGGCAATATATCATAAATCAATACTACATGAGGTATTA-------------------CGAAAACAAGGTATTTCTTCTTTTTAAGAAAACACAGACAAGAAACTTTGCAAGTTGTCTTAGA---TGCGCTGATATGATATGTGCT---AGTCG--TTGGTTTACAT---GTATGTAA---AC--ATTA--TTTACAAA-TAAATCTCTGGAATT-GTTTTCTCGCAG-GTCATTACACAGTTAACACTGAAATAGAAAGTGT-T-------T-TCATCTTCTA-CTGAATTTGACTGACAAAGTCTACAAAGTCACTGATCAGG--TTGCTCCCCAACATACCTTCCGGTTTCAATTC-TGAGT-GGCAAGATACTAGTTCTAAATTGACACAAAACAGAGCGTCCAT---TCTTGT-TTA-AGTTCATCATAATGTAATCCTCACATTTAAAATTTTCCTTAAACAG--GCGATGCGTTCTCAGTTTTGATATACTT------TGA-ACGTCTTCTGACC----AGACATTAGAATA--ATA----GT---T-TA-CTAG----TA-ATCCATGTG-CTT-----GT-T-AATAAT-TGTTCTGTTTTC---GTGATTT-G-CGGAT---AACCCCAGCATAGACATAACATG-TTTAATATCATGTG-ACCAATTATTTTTGCA-C--TTTAAATAGTCG-GAATTAAACAC-TTTTTTTGT-AATCCATCTGTACTCAATCAAAATCACTCTATTTGACATA-CGCAACATGTTTCCCCATCGTCTGTAAACACTTGGTATCCACCCGGTGTCCCCAACCATCGCGAGAATTGGCGT------GAAGCGATGAACACCAAGAAAGTATCTCATGGCTCTATTCTGAACATTATC---TATA-TGT-TGATACTTCTTGATACACCACACTGAGGAGGAATAGTCGAGGATGGGCACAATACA
gi|30                         :                                                                                                                                                                         ATGT----------TATACA--TTA------TGTA-CAATT---T--ACA-AAAT--TGT--A--TGG--CA-----CCCAGCCCA-TT-GGGCCTCTATGTCACC----
gi|31                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   acaacaatacttacaacattgtgtttataaatggtaaaaaatgctttgCATCAACAATATATCAGGTATTAAGTCTGATATAATAGTTAACGAAAACAAGACATTTCTTCTTTTTAAGAAAGCAGAGACAAGAAAC
gi|32                         :                                                                                                                                                                                                                                                                                                                                                                                          GTACA-------A---AAT--CCTGATAAAATATTAGTAAAA-TATTCACTGTGTATTTAAT-ATTGTCAGTATGGACGGTAATTTTGTTAAG--AATGTTATAAATACA-ATAGAAgtgtttaattgtt
gi|33                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CC----AGATATTTGAGTA--ATA----GTCCGT-TATCTTGGTCTTA-A-CGATAT--CT----ATGTGT--ATAAC-AGATTTGTTTTCAAAAAAGTTT-ATCAGAT---
gi|34                         :                                                                                                                             accttTTGTGTATTAAA-GTGACATGTG--T--GCA----AC-AAAAT----------TATA-G--T-A------ATTA-C-ATT-------CA-AATT--TATCAA--TGGCACA-----CCCGACCAG-AT-GGACCTAt
gi|35                         :                                                                                                                                                     TGTGCAT--ACA----ATGTATAT----------TACAAA--T-AGTTA--TATA-CAA--------AAA-AAA----AA--A--AG------------CGGCCCA-TT-GGACCTATAAGTCACC----aatc
gi|37                         :                                                                                                                                     TTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TAAGT----------TATACAATT-G------TAT--TTATT---G----A-AAAT--CAT--taaactattaggtat
gi|38                         :                                                                                                                                                                                                                                            G--CA-----CCCGGCCCA-TT-GGACCTATAAGTCACC----t
gi|39                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               aaaaaacaaTC-TTAGA-GGTAGAATACCACATCTAAATTGGGCCAACAATGAACGTtaaactgttaggtataaactg
gi|4                          :                                                                                                                                    GTTTATTATT-GTGACATGTGCAT--ACAT-TCAT-TAAGT----------TATACA--T-A------TATA-CAATT---A--ACA-AAAT--TAT--T--TGG--CA-----CCCGGCCCA-TT-GGGCCTATATGTCACC----A-GGATAAT-CAAGAAAG---TAAT----TATAT------ACA--AAATTCGTAAATAC-T-CTATTATAT-A-----CA--T--AAGTTAAATATGACGTACA-------A---AAT--CCTGACAAAATATTAGTAAAA-TATTCACTGAGTATCCAGT-ATTGTCAGTATGGAGTGTA----------------GTTATAAATATA-ATAGGAAA-ACAGGCAATATATCATACATCAACAATACATGATGTATTAAGTTTGACATAATATTTTACGAAAACAAGATATTTCTTCTTTTTAAGAAAGCACAGAGAAGAAACTTTGCAAGTTGTCTTGGA---TGCGCTGATATGATATATGCA---AGTCG--TTAGTTTATAT---GCTTGTAA---GC--ATTA--TTTACAAA-TAAATCTCTGAAATT-GTTTTCTTGCAG-GTCATTATACAGTTCACACTGA
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TCCTTAAAAAG--GCGATATGTTCTCAGTTTTAATATTCTT------TGA-ACGTCTTCTGACC----AGACATTAGAATA--ATA----GT---T-TA-CTAG----TA-ATCCATGTG-CTTGTGATAAGTCAATAAT-TGTTCTGTTTTC---GTAATTT-G-CGGAT---AACCCTAGCATAGACATAACGTG-TTTAATATCATGTG-ACCAATTATTTTTGCA-C--ATTAAATAGTCG-GAATTTAACAC--TTTTTTGT-AATCCGTCTGTCATCCATCAAAATCACTCTGTTCCACATA-CGCAACATGTTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccttaaaaaggcgatatgttctcagttttaatattctttgaacgtcttctgaccagacattagaataatagtttactagtaatccatgtgcttgtgataagtcaataattgttctgttttcgtaatttgcggataaccctagcatagacataacgtgtttaatatcatgtgaccaattatttttgcacattaaatagtcggaatttaacacttttttgtaatccgtctgtcatccatcaaaatcactctgttccacatacgcaacatgttt
gi|5                          :                                                                            gtttattattgtgacatgtgcatacattcattaagttatacatatatacaattaacaaaattatttggcacccggcccattgggcctatatgtcaccaggataatcaagaaagtaattatatacaaaattcgtaaatactctattatatacataagttaaatatgacgtacaaaatcctgacaaaatattagtaaaatattcactgagtatccagtattgtcagtatggagtgtagttataaatataataggaaaacaggcaatatatcatacatcaacaatacatgatgtattaagtttgacataatattttacgaaaacaagatatttcttctttttaagaaagcacagagaagaaactttgcaagttgtcttggatgcgctgatatgatatatgcaagtcgttagtttatatgcttgtaagcattatttacaaataaatctctgaaattgttttcttgcaggtcattatacagttcacactgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATGGAAAGTGTGTGACAAGATTTCATCTTCAATCTGAAGTAGATT-ACAAAGTGTG---AGTCTTTGCTCTCG--TTGCTCACCGACATATCGTCGCGTTTCAACTC-TTTGA-GGTAGAATACCACATCTAAATTGGGTCAACAATGAACGTTCCTG--T-TTGT-TAA-ATTTTAAAACCATATATTGTTCAAGTTCAAATTTATTTTTAAA-AGTAAC-ATAAGTCTGCAATTTAGGCATC--T------TGCTACTTCTACCTTCC----AGATATTTGAGTA--GTATTTCGT---TATC-TTAGTCT-TA-A-CAATGT--CT----ATGTGT--ATAAC-AGTTTTGTTTTCAAAATAGTTC-ATCAGATTTAAAT-------TGGACAAAAC-TGTTTTCAGATCAT-TGTACCAATTATGTTTACA-C--TTGTTATAGTTC-ATGTTAAAGAC-ACGCCTGGT-TAGCCTATTGTCATCAAACAATACAAGTCTGTTCCA-GTATCGTATCATTGCTACCCAACGGCGATAACAACTAGGAAGCCATCCCGCACATGCGGTGATTGCAAGTTTCGGGGC------AAATCTGTGTACGCCAAGAAAGTACCGTAAAGCACGATTCTGTACATTGTC------------TGGTAATGTTTGAATCCCCATACTGATGCACAGTAGTCCAATATTGGTACAAAACACGATTCAAATA-GTCTTTTGGTAG--TTTAATATCTTTTCCAAG-GTATAAGTCATTTAT
gi|6                          :                                                                                                ttattatagtgatatgtgtacAGATAAG---ATACTGTTTATTATT-GTGACATGCG-----ACAT-TCAT-TATGT----------TGTACA--T-A------TATA-CAACT---G--ATA-AA----TAT--A--TGG--CA-----CCCAGCCCA-TT-GGGCTAATATGCCACC----A-GATTAAT-CAAGAAAG---TAAT----TATAT------AGA--TGATTCGTGAATAC-TGCTATGATAT-A-----CA--T--ATGTTAACTTTTAAGTACATGTACGTA---AAT--GCTGACAAAATATTAGCAAAA-TATT-TCTGTGTATTTAAT-ATTGGTAGTATGGACGATAGTTATTGTA-ATTTTTTTTATAAATATA-ATAAGAAT-ATTGACAATAGATCATACATCAACAAAACATGAACTATAAAGTCTGACGTAATAGTTTACAAAAACATCACATTTCTCCTTTTTATGAAAGCACAGACAAACAA------AGGTTTTCTCGGA---TGCGCTGATATGATATGTGAA---AGTCG--GT-GTTTATAT---GCATGTTA---GCAAATTAATCTTA-AAA-T--ATCTAT---ATA-GTTt
gi|7                          :                                                                                                         tATA---AGAGAAGAGAA----ATATTGTTTAT-ATTCGT--TATGT-TAT--ACAT-ACA----AAT----------TAT-CA--T-A------CATA---ATT---G--ACA-AAAT--TAT--A--TGG--CA-----CCCGGACCA-TTTGAATTTATATGCCACC----A-GGTTATT-CAAGAGAG---TAATAAACTATAT------ATA--CCATTCGTAAATAC-TGTTAGTATAT-AGTTAACT--T--AT-TTAACTATGAAGTTCA-------A---ACT--CCTGACTAAGTATTTGCAAAAATATTCCCTGTGTATTTGAC-ATTGTTTGTATGAACGGTAATTATGGTAAA--TTTGTTATAAATACA-ATAAGACT-ACTTGCAATAGTTCATACATCAACAATACA----GTAT-------GACATAATAGTTGACGAAGACAAGATATTACATCTTTTTAAGAAAGCACAGACAAGACATTTTGCAAGTTTTCTTGGA---TGCGCCGATATAATCTGTGAG---ACTC---CTGGTTTATATGTAGCATGTTA---GC--AATA--TCTACAAA-TAAATCTCTGAAATA-GTTTTCTCGCAG-GCCATTATACAGTTCACACTGAAATAGGAAGCGC-T-------TCGTATCTTCggcaaacgccattttctgtttcgttgactgcaattagtatttgccttactaagttctatatctgaccctgaaaagtgcaca
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TACTTCTTCTTCTCATGTAAGCATATACAATATATTTAGCTACTTTTCTGGGAACGTGTG-TGACAAGAAATACACATTTAGCCATACTA-TCCATAC----CAT-TAAACTGC--AT-A--TTTGAAAA-TTGTTCATTCAAAAT-GTCTGCT-GTAATATCATTGTAAAATGTACATTAGATCAAAAAATGA-T-------TTTCATCTTCAATCTGAAGTAGATT-ACAAATTGTGCAGAGTCTTTGCTCTCG--CGGCTCACCGACATATCGTCCCGTTTCTATTC-TTAGT-GGTAA--------------ATTGGGCCAACAATGAACGTTCCTG--T-TTGC-TCA-AATTTAAAAGCACATATTGTTCGAATTCAAATTTATCTTTAAA-AGTTAC-ATAAGTCCGTAATTTAGGCACTCTTACTACATAA-AC--CTTC----C----AGATATTTGAGTA--GTA----TT---C-CG-TTAGCT--TA-GTCTAAACAATTT-TTATGTGT-A-TAAC-AGTTTTGTTTTCAAAATAGTTT-ATCAGAT------TCGAAT-TGGACATAAC-TGTTTTCAGATCACTAC-ACCAATTACTTTttgtactcaaatatcagacaa
gi|9                          :                                                                                                        AAATAAGTAAGTAAG-TAAGTAAATATT--TTATTAAA-GTGACATGTGCAT--ACA----ATATATGT----------TACAAA--T-AGTTG--TATA-CAA--------ACA-AAA----AC--A---AG--CA-----CCCGGCCCA-TT-GGACCTATAAGTCACC----
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): ATTTGTAAGTAAGTATGTAAGTAAGTTTTTATTATAAAAACGTGTGTAAATTTATAACATAATATGTTAATATGCAGTTTTTACAGAACACAATCGGCCCAATGGACCTAGTCACATATATAAATAT
Unaligned ( gi|27 ): AATACTTCTTCATGTGTTAATAATATTTAAAAAAAATATACAAATTGTTTAAAAAATGTGTCATGTGATAACAATATTGGATGTATTTTAAGTACGTTAAAAGGACGTGGCTAACTGTTTTA
Unaligned ( gi|28 ): TAAGTATGTAGATATTGACATGTGCATGACAATACAATAACATGCAAAATGATATGTGGAGCACTAAGGCCTAACAGGCATATAATAATTCGCTACCAAAAAACAAAAATGTCATTCCAT
Unaligned ( gi|29 ): TAAGGTGACAGGTACACATGTAACATGACATATATTTGGAACACACACACGATGGAACCATAACAGATACTATCTTAGACAAGCATCATTAAATCATTCATTATGGTTAGACACTAAA
Unaligned ( gi|36 ): GTCACTTCCAATAAATAGAAGTAATATGAAATTCATATGATAATAATCAACATAATAGACTATTGTAGGTACACATTTGCAT