lowQualScore : 111111111111111111111111111111
lowQualScore : 1 1 1 2 22 2 1 222222222222222222222222222222 1111111 2222 22222222 2222 11 22222 22 1 1 1 1 44444 11 1
lowQualScore : 7 5 6 4 2 5 4 7 44 2 6 0 2 111111111111111111111111111111 66 0000000 1111 55555555 66 5 5 5 1111 33 6 66666 4 22 6 8 6 3 7 5 7 3 11111 77 2 2 0
lowQualScore : . . . . . . . . .. . . . . .............................. .. ....... .... ........ .. . . . .... .. . ..... . .. . . . . . . . . ..... .. . . .
lowQualScore : 0 0 4 8 7 2 4 5 99 0 5 2 4 333333333333333333333333333333 99 4444444 1111 88888888 99 0 3 4 1111 66 0 00000 0 55 0 3 0 3 0 0 0 2 00000 22 2 5 5
consensus : CGTCAACTTTTAGTCGTCAAAGAAAGTCTCATATAAAGTCTGCATCAATATTAGCAA-ATAAAAA-TATTCAACTAAACAACTAGTTAAATTAAAAATAA-AAATATCTATATNTATAT---AATAAATAANAAAT-A-AATAAATACTTAAACTCCAAAGTAAATAATC--ATCGT---T---CAT-C--ATCATCTTCATC----ATCATC--AT-TGGTTTTAAATAATCNTCT--TATTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATATATGCGANTTTAAGNATGTTTGTAATCATTTTTATGATTAT-ACGTTTAATAATCATATATACCTTATACATTCAACTTATTTTTC---AATAGTTGACAACATACANGCAATTATTATGC
Reference ( gi|1 ) : CGTCAACTTATAGTCCTCAAAGAAAGTCCCATATAAAGTCTGCATCAATATTAACGA-ATAAAAACTATTCAACTAAACAACTAGTTAAATTAAAAATAATAAATATATATATATATATATTAATAAATGACAAATTA-AATAGATAATTAAACTCCAAAGTAAATAATC--ATCGT---T---CAT-A--ATCATCTTGATC----ATCATC--AT-TGGTTTTAAATAGTATTCT--TATTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTAATATAAACATGAATTTAA-CATGTTTATAATTATTTATATGATCAT-ACGTTTAAAAATCATATATAACTTATACAATCAACTTATTTTT----GATAGTTGCTAACATATACGCAATTATAATGC
gi|7 : CGTCAACTTTTAGTCAT--AAAAAAGTCTCATA--AAATCCGCATCAATATTAGCAA-ATAAAAA-TATTCAACTAAACAACTAGTTAAAATAAAAATAA-AAATATCTATATA---------ATAAA-----AA--A-AATAAATACCTAAACTCCAAAGTAAATAATC--ATCGT---T---CATCATCATCATCTTCATC----ATCATC--AT-TGGTTTTAAATAATCATCT--TATTT
gi|6 : CGTCCATTTTTAGCCATCAAAGAATATCTCGTATAAAATCTGAATAAATATTAGTCA-CTTAAA--TAATCAAATAAACTACTAGTTAA---------AACATATATCTATATATTTATA-TAATAAA----ATATTA-A----ACACTTAAACCTCATA-CAAATAATC--ATCTG---T---CAT-A--ATCATTTT-ATCATAAATCATC--GTATTTTTTTAAAAATCATCTTA-TATTTT
gi|5 : tTTAACATTTGGTTGTTGAAGAAGGTC--ATATAAAGTCTGCATCAATATTAGCAA-ATAAATA-TATTCAACCG--------GTTAAAT-AAAAATAG-GAGTATCTATAGTTATA-------AAATAAGAAGT--------GT--TTAAACTCCAAAGTAGGTAATCGCATCGT---TTATCGT-C--GTCATCTTCATC----ATCATC--AT-TAGTTTTAAA------CCT--TATTTTt
gi|12 : TAGTCATTAAAGAAAGTCTCATATAAAGTCTGCATCATTATTAATGA-ATAAAAA-TATTCAATTAAACAACTAGTTAAA-TAAAAATAA-AAATTTCTATATGTATA---TAATAAA--AAAAATAATAACAAATATTTAAACTCCAAAGTttaagtaatcatcttgtttt
gi|9 : ttaatattTCAAAGAAAGTCCCATATAAAGTCTGCATCAATATAAGCAA-ATAAAAAATATTCAACTAAACAACTAGTTAAA--AAAAA----AANNNNNNNNNNNNNNNNNNNNNNNNNNNATAAATAA-AACAGATAATTAAACTCCTAAGTAAATAATC--ATCGT---T---CAT-C--ATCATCT----------TCATC--AT-TGGTTTTAAATAGTCGTCT--TATT
gi|8 : aAAGAAAGTCCCATAATAAGTCTGCATCAATATTAACAACAAAAAAACTATTCAACTAAACAACTAGTTAAATTAAAAATAATAAATAAATATATATATAT----------GATAAATAA-AATAGATAATTAAACTCCAAAGTAAATAATC--ATCGT---C---CAT-C--ATCATCTTAATC----ATCATC--AT-TGGTTTTAAAAAGTCTTCC--TA
gi|10 : AAGAAAGTC--ATATAAAGTCTGCATCAATATTAGCAA-ATAAAAA-TATTCAATTAAACAACTGGTTAAAT-AAAAACAG-GAGTATCTATATTTATA-------AAATAAGAAGT--------GT--TTAAACTCCAAAGTGGGTAATC--ATCGTTTAT---CAT-C--GTCGTCTTCATC----GTCATC--AT-aatt
gi|4 : ttagcatttggctgttgAAAGTC--ATATAAAGTCTGCATCAATATTAGCAA-ATAAAAA-TATTCAACTAAACAACTGGTTAAAT-AAAAATAA-AAATATCTATATTTATA-------AAATAAGAAAT--------AT--TTAAACTCCAGGGTGGGTAATC--ATCGT---T---TAT-C--ATCGTCATCTTC----ATCATC--AT-TAGTTTTAAATAATCATCT--TATCTT
gi|13 : CATATAAAGTCTGCATCAATATTAGCAA-ATAAAAAttaaaataatcatcttattttttaaaataatcatcttattttt
gi|14 : cgttagcatttggttgttggtTATATATAT-AATAA--GATAA-------TAAACACTGAAACCTCAA-GCAAATAATC--ATAGG---T---CAT-T--ATCATTTT-ATCATAAATCATCGTAT-T--TTTTAAATAATCATCTGATATTTTtaggagtatctatatttataaaataataagtgtttaaactccatagcaggtaatcatcgtttatcatcgtcatcttcat
gi|3 : gACATATATGCGATTTTAA-AATGTTTATAATCATTTTTATGATTAA-ACGTTAAATAATCATATATACCATATACATTCAACTTATTTTTTA--AATAGTTGACAACATACAAGCAATTATTATt
gi|2 : tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcatatttggttagatactgtgtctttgtggATTTAAGCATGTTTGTAATCATTTATATGATTAT-ACGTTTTATAACCATATATACCTTATACATTCAACTTATTTCT----AATACTTGACAACATACAGGCAATTATAATtattattgcgtttataacata
gi|11 : aataaaagtattcaactaaacaactagttaaattaaaaatagtaaatacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngataaataaatagtcttcttatttttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcttttacactaaatataaacatgtttgcatcatatttggttatatattgtgtctttgtggacatatatgcgATTTTTATGATTATTACGTTTAATAATCATATATACCTTATAAATTCAATTTATTTTT----AATAGTCGATAACATATACGTAATTATTATGCtattattgcgtttataacataa
gi|16 : gcctttcggtacatatgcgacgcttgcattcctaaTCAACTT-TTTTTCTTAAATAGTTGACAACATACACGCAATCATTATaaacattatacaaaattatagcataa
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACATACTCGGTAAATACTG
Unaligned ( gi|17 ): AATAGTTGACGACATACACGCAATAATTATTATTGCGTTTATAACATAAGT
Unaligned ( gi|18 ): ATATGTTGACAACATACACGCAATTATTATTATTATTGTGTTTAT
Alignments
lowQualScore : 1 11 1 1111111 444444444444444444444444 222 1111 222222222222222 77777777777777777777777777777777777777777777777777777777777777777777777777777 22 1111 1 4444
lowQualScore : 2 4 0 4 3 3 7 77 0 1111111 4 777777777777777777777777 0 4 55 888 0 8888 66 4 3 999999999999999 1 66 5 77777777777777777777777777777777777777777777777777777777777777777777777777777 00 6666 2 4 33 4 0 0 1111 5 1
lowQualScore : . . . . . . . .. . ....... . ........................ . . .. ... . .... .. . . ............... . .. . ............................................................................. .. .... . . .. . . . .... . .
lowQualScore : 2 0 2 0 6 6 3 66 9 8888888 2 000000000000000000000000 8 1 55 000 7 9999 11 4 4 888888888888888 0 99 7 00000000000000000000000000000000000000000000000000000000000000000000000000000 88 2222 5 2 55 0 0 8 5555 7 0
consensus : CGTCAACTTTTAGTCGTCGAAGAAAGTCCCATATAAAGTCTGCATCAATATTAG-CAA-AT-AAAAA-TATTCAACTAAACAACTAGTTAAATTAAAAATAG-AAATA-------TCTATATNTATAT----ATAAATAAGAAAT-A--AATAAATATTTAAACTCCAAAGTAAATAAT--CATCGTT-ATCATCGTCATCTTCATC----ATCATC--AT-TGGTTTTAAA--------------TAATCATCT--TAT-TTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTAACATATACGCGAN-TTTAAGCATGTTTATAATCATTTNTATGATTAT-ACGTTTAATAATCATATATACCTTATACATTCAACTTATTTTT----AATA-GTTGACAACATACACGCAATTATTATGC
Reference ( family-7105 ) : CGTCAACTTTTAGTCGTCAAAGAAAGTCTCATATAAAGTCTGCATCAATATTAG-CAA-AT-AAAAA-TATTCAACTAAACAACTAGTTAAATTAAAAATAA-AAATA-------TCTATATNTATATA---ATAAATAANAAAT-A--AATAAATACTTAAACTCCAAAGTAAATAAT--CATCGT---TCATCATCATCTTCATC----ATCATC--AT-TGGTTTTAAA--------------TAATCNTCT--TAT-TTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATATATGCGAN-TTTAAGNATGTTTGTAATCATTTTTATGATTAT-ACGTTTAATAATCATATATACCTTATACATTCAACTTATTTTTC---AATA-GTTGACAACATACANGCAATTATTATGC
gi|1 : CGTCAACTTATAGTCCTCAAAGAAAGTCCCATATAAAGTCTGCATCAATATTAA-CGA-AT-AAAAACTATTCAACTAAACAACTAGTTAAATTAAAAATAATAAATA-------TATATATATATATATTAATAAATGACAAATTA--AATAGATAATTAAACTCCAAAGTAAATAAT--CATCGT---TCATAATCATCTTGATC----ATCATC--AT-TGGTTTTAAA--------------TAGTATTCT--TAT-TTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTAATATAAACATGAA-TTTAA-CATGTTTATAATTATTTATATGATCAT-ACGTTTAAAAATCATATATAACTTATACAATCAACTTATTTTT----GATA-GTTGCTAACATATACGCAATTATAATGC
gi|10 : TTTGGCTGTTGAAGAAAGTC--ATATAAAGTCTGCATCAATATTAG-CAA-AT-AAAAA-TATTCAATTAAACAACTGGTTAAA-TAAAAACAG-GAGTA-------TCTATATTTATA-------AAATAAG-----------AAGTGTTTAAACTCCAAAGTGGGTAAT--CATCGTTTATCATCGTCGTCTTCATC----GTCATC--AT-
gi|11 : ttagcaACATATGCGACGCTT--GCAT--TCCTAA--ATTTTTATGATTATTACGTTTAATAATCATATATACCTTATAAATTCAATTTATTTTT----AATA-GTCGATAACATATACGTAATTATTATGC
gi|12 : gcctttcggtTTTAGTCATTAAAGAAAGTCTCATATAAAGTCTGCATCATTATTAA-TGA-AT-AAAAA-TATTCAATTAAACAACTAGTTAAA-TAAAAATAA-AAATT-------TCTATATGTATATA---ATAA--AAAAAAT-AATAACAAATATTTAAACTCCAAAGTaaacattatacaaaattatagcataa
gi|13 : ttaataTCATATAAAGTCTGCATC-------------------AA-TATT-------------AGC-AAAT-AAAAATAG-GAGTA-------TCTATATTTATA--------------AAAT-A--A-TAAGTGTTTAAACTCCATAGCAGGTAAT--CATCGTTTATCATCGTCATCTTCAT
gi|14 : cgttagcatttggttgttggTATATATATA---ATAAG------AT-A--A-TAAACACTGAAACCTCAA-GCAAATAAT--CATAGG---TCATTATCAT-TTTATCATAAATCATCGTAT-T--TTTTAAA--------------TAATCATCTGATAT-TTT
gi|16 : gTTCAACTT-TTTTTCTTAAATA-GTTGACAACATACACGCAATCATTATt
gi|17 : ---AATA-GTTGACGACATACACGCAATAATTATtattattgcgttgataacataagttacat
gi|18 : ATATGTTGACAACATACACGCAATTATTATtattgcgtttataacataagt
gi|2 : A-AT-AAAAG-TATTCAACTAAACAACTAGTTAAATTAAAAATAGTAAATACNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNGAT-A--AATAAATAtattattgtgtttat
gi|2 : ACATATATGCGA--TTTAAGCATGTTTGTAATCATTTATATGATTAT-ACGTTTTATAACCATATATACCTTATACATTCAACTTATTTCT----AATA-CTTGACAACATACAGGCAATTATAATgtcttcttatttttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcttttacactaaatataaacatgtttgcatcatatttggttatatattgtgtctttgtggacatatatgcgatttaagcatgtttgtaatcatttatatgattatacgttttataaccatatataccttatacattcaacttatttctaatacttgacaacatacaggcaattataattattattgcgtttataacataa
gi|3 : aataaaagtattcaactaaacaactagttaaattaaaaatagtaaatacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngataaataaatagtcttcttatttttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcttttacactaaatataaacatgtttgcatcatatttggttatatattgtgtctttgtggACATATATGCGAT-TTTAA-AATGTTTATAATCATTTTTATGATTAA-ACGTTAAATAATCATATATACCATATACATTCAACTTATTTTTTA--AATA-GTTGACAACATACAAGCAATTATTATtattattgcgtttataacataa
gi|4 : tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcatatttggttagatactgtgtctttgtggAAAGTC--ATATAAAGTCTGCATCAATATTAG-CAA-AT-AAAAA-TATTCAACTAAACAACTGGTTAAAT-AAAAATAA-AAATA-------TCTATATTTATA-------AAATAAGAAAT-A----------TTTAAACTCCAGGGTGGGTAAT--CATCGT---TTATCATCGTCATCTTC----ATCATC--AT-TAGTTTTAAA--------------TAATCATCT--TAT-CTTtattattgcgtttataacata
gi|5 : TTAACATTTGGTTGTTGAAGAAGGTC--ATATAAAGTCTGCATCAATATTAG-CAA-AT-AAATA-TATT--------CAACCGGTTAAA-TAAAAATAG-GAGTA-------TCTATAGTTATA-------AAATAAG-----------AAGTGTTTAAACTCCAAAGTAGGTAATCGCATCGTTTATCGTCGTCATCTTCATC----ATCATC--AT-TAGTTTTAAACCTTATTTTTTAAGTAATCATCT--TGT-TTTttaaaataatcatcttattttttaaaataatcatcttattttt
gi|6 : CGTCCATTTTTAGCCATCAAAGAATATCTCGTATAAAATCTGAATAAATATTAGTCAC-TT---AAA-TAATCAAATAAACTACTAGTTA----AAACAT-----ATA-------TCTATATATTTAT----AT-AATAAAATAT------TAAACACTTAAACCTCATA-CAAATAAT--CATCTG---TCATAATCAT-TTTATCATAAATCATC--GTATTTTTTTAAA---------------AATCATCT--TATATTT
gi|7 : tCGTCAACTTTTAGTCAT--AAAAAAGTCTCATA--AAATCCGCATCAATATTAG-CAA-AT-AAAAA-TATTCAACTAAACAACTAGTTAAAATAAAAATAA-AAATA-------TCTATAT-------------AATAAAAA---A--AATAAATACCTAAACTCCAAAGTAAATAAT--CATCGTTCATCATCATCATCTTCATC----ATCATC--AT-TGGTTTTAAA--------------TAATCATCT--TAT-TTtt
gi|8 : AAGAAAGTCCCATAATAAGTCTGCATCAATATTAA-CAACAA-AAAAACTATTCAACTAAACAACTAGTTAAATTAAAAATAATAAATA-------AATATATATATATG---ATAAATAA--AAT-A--GATAA----TTAAACTCCAAAGTAAATAAT--CATCGT---CCATCATCATCTTAATC----ATCATC--AT-TGGTTTTAAA--------------AAGTCTTCC--TA
gi|9 : TCAAAGAAAGTCCCATATAAAGTCTGCATCAATATAAG-CAA-ATAAAAAA-TATTCAACTAAACAACTAGTTAAA--AAAAAAAN-NNNNN-------NNNNNNNNNNNNNN---NNNNNNNATAAATAA--AACAGATAATTAAACTCCTAAGTAAATAAT--CATCGT---TCATCATCATCT----------TCATC--AT-TGGTTTTAAA--------------TAGTCGTCT--TAT-Taatt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACATACTCGGTAAATACTG
Alignments
lowQualScore : 1 1 11 11111111 44444444444444444444444444 22222 222222222222222 777777777777777777777777777777777777777777777777777777777777777777777777 1 11 1 2222
lowQualScore : 1 0 55 4 4 3 3 7 7 22 33333333 4 99999999999999999999999999 88888 2 55 55555 77 9999 9999 66 4 3 999999999999999 66 5 222222222222222222222222222222222222222222222222222222222222222222222222 0 44 3 99 2 0 33 1 0 0 3333 5
lowQualScore : . . .. . . . . . . .. ........ . .......................... ..... . .. ..... .. .... .... .. . . ............... .. . ........................................................................ . .. . .. . . .. . . . .... .
lowQualScore : 4 4 44 8 0 6 6 3 8 77 22222222 5 88888888888888888888888888 33333 0 55 22222 44 4444 4444 11 4 4 888888888888888 99 7 000000000000000000000000000000000000000000000000000000000000000000000000 0 00 2 00 5 8 55 0 0 8 3333 7
consensus : CGTCAACTTTTGGTCGTCGAAGAAAGTCCCATATAAAGTCTGCATCAATATTAG-CAA-ATAAAA-A-TATTCAACTAAACAACTAGTTAAA-TAAAAATAG-AAATA--------TCTATATNTATAT-AT----A-AATAAGAAAT-A--AATAA-----ATATTTAAACTCCAAAGTAAATAAT--CATCGTTT-ATCATCGTCATCTTCATC----AT----CATC--AT-TGGTTTTAAA--------------TAATCATCT--TAT-TTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTAACATATACG-CGANTTTAAGCATGTTTATAATCATTTNTATGATTAT-ACGTTTAATAATCATATATACCTTATACATTCAACTTATTTTT----AATA-GTTGACAACATACACGCAATTATTATGC
Reference ( family-7105 ) : CGTCAACTTTTAGTCGTCGAAGAAAGTCCCATATAAAGTCTGCATCAATATTAG-CAA-ATAAAA-A-TATTCAACTAAACAACTAGTTAAATTAAAAATAG-AAATA--------TCTATATNTATAT-AT----A-AATAAGAAAT-A--AATAA-----ATATTTAAACTCCAAAGTAAATAAT--CATCG-TT-ATCATCGTCATCTTCATC----AT----CATC--AT-TGGTTTTAAA--------------TAATCATCT--TAT-TTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTAACATATACG-CGANTTTAAGCATGTTTATAATCATTTNTATGATTAT-ACGTTTAATAATCATATATACCTTATACATTCAACTTATTTTT----AATA-GTTGACAACATACACGCAATTATTATGC
gi|1 : CGTCAACTTATAGTCCTCAAAGAAAGTCCCATATAAAGTCTGCATCAATATTAA-CGA-ATAAAA-ACTATTCAACTAAACAACTAGTTAAATTAAAAATAATAAATA--------TATATATATATAT-ATTAATA-AATGACAAATTA--AATAG-----ATAATTAAACTCCAAAGTAAATAAT--CATCG-TT---CATAATCATCTTGATC----AT----CATC--AT-TGGTTTTAAA--------------TAGTATTCT--TAT-TTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTAATATAAACA-TGAATTTAA-CATGTTTATAATTATTTATATGATCAT-ACGTTTAAAAATCATATATAACTTATACAATCAACTTATTTTT----GATA-GTTGCTAACATATACGCAATTATAATGC
gi|10 : TTTGGCTGTTGAAGAAAGTC--ATATAAAGTCTGCATCAATATTAG-CAA-ATAAAA-A-TATTCAATTAAACAACTGGTTAAA-TAAAAACAG-GAGTA--------TCTATATTTATA--------A-AATAAG-----------AA-----GTGTTTAAACTCCAAAGTGGGTAAT--CATCGTTT-ATCATCGTCGTCTTCATC----GT----CATC--AT-
gi|11 : ttagcaACATATGCGACG-CTT---GCAT--TCCTAA--ATTTTTATGATTATTACGTTTAATAATCATATATACCTTATAAATTCAATTTATTTTT----AATA-GTCGATAACATATACGTAATTATTATGC
gi|12 : gcctttcggtTTTAGTCATTAAAGAAAGTCTCATATAAAGTCTGCATCATTATTAA-TGA-ATAAAA-A-TATTCAATTAAACAACTAGTTAAA-TAAAAATAA-AAATT--------TCTATATGTATATAAT----A-A--AAAAAAT-AATAACAA-----ATATTTAAACTCCAAAGTaaacattatacaaaattatagcataa
gi|13 : ttaataCGTTAGCATTTGGTTGTTG------GTC--ATATAAAGTCTGCATC------------------A-A-TATT-------------AGC-AAAT-AAAAATAG-GAGTA--------TCTATATTTATA----------------AAAT-A--A-TAA-----GTGTTTAAACTCCATAGCAGGTAAT--CATCGTTT-ATCATCGTCATCTTCAT
gi|14 : TATAT-AT----ATAATAAGA--T-A--A-TAA-----ACACTGAAACCTCAA-GCAAATAAT--CATAG----GTCATTATCATTTT-ATC----ATAAATCATCGTAT-T--TTTTAAA--------------TAATCATCTGATAT-TTT
gi|16 : gTTCAACTT-TTTTTCTTAAATA-GTTGACAACATACACGCAATCATTATt
gi|17 : ----AATA-GTTGACGACATACACGCAATAATTATtattattgcgttgataacataagttacat
gi|18 : ATATGTTGACAACATACACGCAATTATTATtattgcgtttataacataagt
gi|2 : A-ATAAAA-G-TATTCAACTAAACAACTAGTTAAATTAAAAATAGTAAATACNNNNNNNNNNNNNNNNNNNN-NN----N-NNNNNNNGAT-A--AATAA-----ATAtattattgtgtttat
gi|2 : ACATATATG-CGA-TTTAAGCATGTTTGTAATCATTTATATGATTAT-ACGTTTTATAACCATATATACCTTATACATTCAACTTATTTCT----AATA-CTTGACAACATACAGGCAATTATAATgtcttcttatttttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcttttacactaaatataaacatgtttgcatcatatttggttatatattgtgtctttgtggacatatatgcgatttaagcatgtttgtaatcatttatatgattatacgttttataaccatatataccttatacattcaacttatttctaatacttgacaacatacaggcaattataattattattgcgtttataacataa
gi|3 : aataaaagtattcaactaaacaactagttaaattaaaaatagtaaatacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngataaataaatagtcttcttatttttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcttttacactaaatataaacatgtttgcatcatatttggttatatattgtgtctttgtggACATATATG-CGATTTTAAA-ATGTTTATAATCATTTTTATGATTAA-ACGTTAAATAATCATATATACCATATACATTCAACTTATTTTTTA--AATA-GTTGACAACATACAAGCAATTATTATtattattgcgtttataacataa
gi|4 : tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcatatttggttagatactgtgtctttgtggAAAGTC--ATATAAAGTCTGCATCAATATTAG-CAA-ATAAAA-A-TATTCAACTAAACAACTGGTTAAA-TAAAAATAA-AAATA--------TCTATATTTATA--------A-AATAAG-----------AA-----ATATTTAAACTCCAGGGTGGGTAAT--CATCGTTT-ATCATCGTCATCT---TC----AT----CATC--AT-TAGTTTTAAA--------------TAATCATCT--TAT-CTTtattattgcgtttataacata
gi|5 : TTAACATTTGGTTGTTGAAGAAGGTC--ATATAAAGTCTGCATCAATATTAG-CAA-ATAAAT-A-TATT--------CAACCGGTTAAA-TAAAAATAG-GAGTA--------TCTATAGTTATA--------A-AATAAG-----------AA-----GTGTTTAAACTCCAAAGTAGGTAATCGCATCGTTT-ATCGTCGTCATCTTCATC----AT----CATC--AT-TAGTTTTAAACCTTATTTTTTAAGTAATCATCT--TGT-TTTttaaaataatcatcttattttttaaaataatcatcttattttt
gi|6 : CGTCCATTTTTAGCCATCAAAGAATATCTCGTATAAAATCTGAATAAATATTAGTCAC-TT--AA-A-TAATCAAATAAACTACTAGTTA----AAACAT-----ATA--------TCTATATATTTAT-AT------AATAAAATAT------TAA-----ACACTTAAACCTCATA-CAAATAAT--CATC---T-GTCATAATCAT-TTTATCATAAAT----CATC--GTATTTTTTTAAA---------------AATCATCT--TATATTT
gi|7 : tCGTCAACTTTTAGTCAT--AAAAAAGTCTCATA--AAATCCGCATCAATATTAG-CAA-ATAAAA-A-TATTCAACTAAACAACTAGTTAAAATAAAAATAA-AAATA--------TCTATAT---------------AATAAAAA---A--AATAA-----ATACCTAAACTCCAAAGTAAATAAT--CATCG-TTCATCATCATCATCTTCATC----AT----CATC--AT-TGGTTTTAAA--------------TAATCATCT--TAT-TTtt
gi|8 : AAGAAAGTCCCATAATAAGTCTGCATCAATATTAA-CAACAAAAAA-ACTATTCAACTAAACAACTAGTTAAATTAAAAATAATAAATA--------AATATATATATATGAT----A-AATA--AAAT-A--GATAA---------TTAAACTCCAAAGTAAATAAT--CATCG-T---CCATCATCATCTTAATC----AT----CATC--AT-TGGTTTTAAA--------------AAGTCTTCC--TA
gi|9 : TCAAAGAAAGTCCCATATAAAGTCTGCATCAATATAAG-CAA-ATAAAAAA-TATTCAACTAAACAACTAGTTAAA--AAAAA----AANNN--------NNNNNNNNNNNNN-NN----N-NNNNNNNNAT-A--AATAAAACAGATAATTAAACTCCTAAGTAAATAAT--CATCG-T---TCATCATCATCT----------T----CATC--AT-TGGTTTTAAA--------------TAGTCGTCT--TAT-Taatt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACATACTCGGTAAATACTG
Alignments
lowQualScore : 1 111 11 11111111 44444444444444444444444444 111 222222222222222 777777777777777777777777777777777777777777777777777777777777777777777777 1 11 1 2222
lowQualScore : 1 0 55 4 4 3 3 7 000 11 33333333 4 44444444444444444444444444 2 55 111 77 9999 9999 66 4 3 999999999999999 66 5 222222222222222222222222222222222222222222222222222222222222222222222222 0 44 3 99 2 0 33 1 0 0 3333 5
lowQualScore : . . .. . . . . . ... .. ........ . .......................... . .. ... .. .... .... .. . . ............... .. . ........................................................................ . .. . .. . . .. . . . .... .
lowQualScore : 4 4 44 8 0 6 6 3 111 55 22222222 5 22222222222222222222222222 0 55 444 44 4444 4444 11 4 4 888888888888888 99 7 000000000000000000000000000000000000000000000000000000000000000000000000 0 00 2 00 5 8 55 0 0 8 3333 7
consensus : CGTCAACTTTTGGTCGTCGAAGAAAGTCCCATATAAAGTCTGCATCAATATTAG-CAA-AT-AAAAA-TATTCAACTAAACAACTAGTTAAA-T-AAAAATAG-AAATA--------TCTATATNTATAT-AT----A-AATAAGAAAT-A--AATAAATATTTAAACTCCAAAGTAAATAATC--ATCGTTTATCATCGTCATCTTCATC----AT----CATC--AT-TGGTTTTAAA--------------TAATCATCT--TAT-TTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTAACATATACG-CGANTTTAAGCATGTTTATAATCATTTNTATGATTAT-ACGTTTAATAATCATATATACCTTATACATTCAACTTATTTTT----AATA-GTTGACAACATACACGCAATTATTATGC
Reference ( family-7105 ) : CGTCAACTTTTGGTCGTCGAAGAAAGTCCCATATAAAGTCTGCATCAATATTAG-CAA-AT-AAAAA-TATTCAACTAAACAACTAGTTAAA-T-AAAAATAG-AAATA--------TCTATATNTATAT-AT----A-AATAAGAAAT-A--AATAAATATTTAAACTCCAAAGTAAATAATC--ATCGTTTATCATCGTCATCTTCATC----AT----CATC--AT-TGGTTTTAAA--------------TAATCATCT--TAT-TTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTAACATATACG-CGANTTTAAGCATGTTTATAATCATTTNTATGATTAT-ACGTTTAATAATCATATATACCTTATACATTCAACTTATTTTT----AATA-GTTGACAACATACACGCAATTATTATGC
gi|1 : CGTCAACTTATAGTCCTCAAAGAAAGTCCCATATAAAGTCTGCATCAATATTAA-CGA-AT-AAAAACTATTCAACTAAACAACTAGTTAAA-TTAAAAATAATAAATA--------TATATATATATAT-ATTAATA-AATGACAAATTA--AATAGATAATTAAACTCCAAAGTAAATAATC--ATCGTT---CATAATCATCTTGATC----AT----CATC--AT-TGGTTTTAAA--------------TAGTATTCT--TAT-TTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTAATATAAACA-TGAATTTAA-CATGTTTATAATTATTTATATGATCAT-ACGTTTAAAAATCATATATAACTTATACAATCAACTTATTTTT----GATA-GTTGCTAACATATACGCAATTATAATGC
gi|10 : TTTGGCTGTTGAAGAAAGTC--ATATAAAGTCTGCATCAATATTAG-CAA-AT-AAAAA-TATTCAATTAAACAACTGGTTAAA-T-AAAAACAG-GAGTA--------TCTATATTTATA--------A-AATAAG-----------AAGTGTTTAAACTCCAAAGTGGGTAATC--ATCGTTTATCATCGTCGTCTTCATC----GT----CATC--AT-
gi|11 : ttagcaACATATGCGACG-CTT---GCAT--TCCTAA--ATTTTTATGATTATTACGTTTAATAATCATATATACCTTATAAATTCAATTTATTTTT----AATA-GTCGATAACATATACGTAATTATTATGC
gi|12 : gcctttcggtTTTAGTCATTAAAGAAAGTCTCATATAAAGTCTGCATCATTATTAA-TGA-AT-AAAAA-TATTCAATTAAACAACTAGTTAAA-T-AAAAATAA-AAATT--------TCTATATGTATATAAT----A-A--AAAAAAT-AATAACAAATATTTAAACTCCAAAGTaaacattatacaaaattatagcataa
gi|13 : ttaataCGTTAGCATTTGGTTGTTG------GTC--ATATAAAGTCTGCATC-------------------AA-TATT-------------AGC-AAA-T-AAAAATAG-GAGTA--------TCTATATTTATA----------------AAAT-A--A-TAAGTGTTTAAACTCCATAGCAGGTAATC--ATCGTTTATCATCGTCATCTTCAT
gi|14 : TATAT-AT----ATAATAAGA--T-A--A-TAAACACTGAAACCTCAA-GCAAATAATC--ATAG---GTCATTATCATTTT-ATC----ATAAATCATCGTAT-T--TTTTAAA--------------TAATCATCTGATAT-TTT
gi|16 : gTTCAACTT-TTTTTCTTAAATA-GTTGACAACATACACGCAATCATTATt
gi|17 : ----AATA-GTTGACGACATACACGCAATAATTATtattattgcgttgataacataagttacat
gi|18 : ATATGTTGACAACATACACGCAATTATTATtattgcgtttataacataagt
gi|2 : A-AT-AAAAG-TATTCAACTAAACAACTAGTTAAATT-AAAAATAGTAAATACNNNNNNNNNNNNNNNNNNNN-NN----N-NNNNNNNGAT-A--AATAAATAtattattgtgtttat
gi|2 : ACATATATG-CGA-TTTAAGCATGTTTGTAATCATTTATATGATTAT-ACGTTTTATAACCATATATACCTTATACATTCAACTTATTTCT----AATA-CTTGACAACATACAGGCAATTATAATgtcttcttatttttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcttttacactaaatataaacatgtttgcatcatatttggttatatattgtgtctttgtggacatatatgcgatttaagcatgtttgtaatcatttatatgattatacgttttataaccatatataccttatacattcaacttatttctaatacttgacaacatacaggcaattataattattattgcgtttataacataa
gi|3 : aataaaagtattcaactaaacaactagttaaattaaaaatagtaaatacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngataaataaatagtcttcttatttttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcttttacactaaatataaacatgtttgcatcatatttggttatatattgtgtctttgtggACATATATG-CGATTTTAAA-ATGTTTATAATCATTTTTATGATTAA-ACGTTAAATAATCATATATACCATATACATTCAACTTATTTTTTA--AATA-GTTGACAACATACAAGCAATTATTATtattattgcgtttataacataa
gi|4 : tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcatatttggttagatactgtgtctttgtggAAAGTC--ATATAAAGTCTGCATCAATATTAG-CAA-AT-AAAAA-TATTCAACTAAACAACTGGTTAAA-T-AAAAATAA-AAATA--------TCTATATTTATA--------A-AATAAG-----------AAATATTTAAACTCCAGGGTGGGTAATC--ATCGTTTATCATCGTCATCT---TC----AT----CATC--AT-TAGTTTTAAA--------------TAATCATCT--TAT-CTTtattattgcgtttataacata
gi|5 : TTAACATTTGGTTGTTGAAGAAGGTC--ATATAAAGTCTGCATCAATATTAG-CAA-AT-AAATA-TATTCAACCG--------GTTAAA-T-AAAAATAG-GAGTA--------TCTATAGTTATA--------A-AATAAGAAGT-G----------TTTAAACTCCAAAGTAGGTAATCGCATCGTTTATCGTCGTCATCTTCATC----AT----CATC--AT-TAGTTTTAAACCTTATTTTTTAAGTAATCATCT--TGT-TTTttaaaataatcatcttattttttaaaataatcatcttattttt
gi|6 : CGTCCATTTTTAGCCATCAAAGAATATCTCGTATAAAATCTGAATAAATATTAGTCAC-TT---AAA-TAATCAAATAAACTACTAGTTA-----AAACAT-----ATA--------TCTATATATTTAT-AT------AATAAAATAT------TAAACACTTAAACCTCATA-CAAATAATC--ATC---TGTCATAATCAT-TTTATCATAAAT----CATC--GTATTTTTTTAAA---------------AATCATCT--TATATTT
gi|7 : tCGTCAACTTTTAGTCAT--AAAAAAGTCTCATA--AAATCCGCATCAATATTAG-CAA-AT-AAAAA-TATTCAACTAAACAACTAGTTAAAAT-AAAAATAA-AAATA--------TCTATAT---------------AATAAAAAA-----AATAAATACCTAAACTCCAAAGTAAATAATC--ATCGTTCATCATCATCATCTTCATC----AT----CATC--AT-TGGTTTTAAA--------------TAATCATCT--TAT-TTtt
gi|8 : AAGAAAGTCCCATAATAAGTCTGCATCAATATTAA-CAACAA-AAAAACTATTCAACTAAACAACTAGTTAAA-TTAAAAATAATAAATA--------AATATATATATATGAT----A-AATAA--AAT-A--GATAA----TTAAACTCCAAAGTAAATAATC--ATCGT---CCATCATCATCTTAATC----AT----CATC--AT-TGGTTTTAAA--------------AAGTCTTCC--TA
gi|9 : TCAAAGAAAGTCCCATATAAAGTCTGCATCAATATAAG-CAA-ATAAAAAA-TATTCAACTAAACAACTAGTTAAA-A-AAAAAANN-NNNNN--------NNNNNNNNNNNNN-NN----N-NNNNATAAATAA--AACAGATAATTAAACTCCTAAGTAAATAATC--ATCGT---TCATCATCATCT----------T----CATC--AT-TGGTTTTAAA--------------TAGTCGTCT--TAT-Taatt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACATACTCGGTAAATACTG
Alignments
lowQualScore : 1 111 11 11111111 44444444444444444444444444 111 222222222222222 777777777777777777777777777777777777777777777777777777777777777777777777 1 11 1 2222
lowQualScore : 1 0 55 4 4 3 3 7 000 11 33333333 4 44444444444444444444444444 2 55 111 77 9999 9999 66 4 3 999999999999999 66 5 222222222222222222222222222222222222222222222222222222222222222222222222 0 44 3 99 2 0 33 1 0 0 3333 5
lowQualScore : . . .. . . . . . ... .. ........ . .......................... . .. ... .. .... .... .. . . ............... .. . ........................................................................ . .. . .. . . .. . . . .... .
lowQualScore : 4 4 44 8 0 6 6 3 111 55 22222222 5 22222222222222222222222222 0 55 444 44 4444 4444 11 4 4 888888888888888 99 7 000000000000000000000000000000000000000000000000000000000000000000000000 0 00 2 00 5 8 55 0 0 8 3333 7
consensus : CGTCAACTTTTGGTCGTCGAAGAAAGTCCCATATAAAGTCTGCATCAATATTAG-CAA-AT-AAAAA-TATTCAACTAAACAACTAGTTAAA-T-AAAAATAG-AAATA--------TCTATATNTATAT-AT----A-AATAAGAAAT-A--AATAAATATTTAAACTCCAAAGTAAATAATC--ATCGTTTATCATCGTCATCTTCATC----AT----CATC--AT-TGGTTTTAAA--------------TAATCATCT--TAT-TTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTAACATATACG-CGANTTTAAGCATGTTTATAATCATTTNTATGATTAT-ACGTTTAATAATCATATATACCTTATACATTCAACTTATTTTT----AATA-GTTGACAACATACACGCAATTATTATGC
Reference ( family-7105 ) : CGTCAACTTTTGGTCGTCGAAGAAAGTCCCATATAAAGTCTGCATCAATATTAG-CAA-AT-AAAAA-TATTCAACTAAACAACTAGTTAAA-T-AAAAATAG-AAATA--------TCTATATNTATAT-AT----A-AATAAGAAAT-A--AATAAATATTTAAACTCCAAAGTAAATAATC--ATCGTTTATCATCGTCATCTTCATC----AT----CATC--AT-TGGTTTTAAA--------------TAATCATCT--TAT-TTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTAACATATACG-CGANTTTAAGCATGTTTATAATCATTTNTATGATTAT-ACGTTTAATAATCATATATACCTTATACATTCAACTTATTTTT----AATA-GTTGACAACATACACGCAATTATTATGC
gi|1 : CGTCAACTTATAGTCCTCAAAGAAAGTCCCATATAAAGTCTGCATCAATATTAA-CGA-AT-AAAAACTATTCAACTAAACAACTAGTTAAA-TTAAAAATAATAAATA--------TATATATATATAT-ATTAATA-AATGACAAATTA--AATAGATAATTAAACTCCAAAGTAAATAATC--ATCGTT---CATAATCATCTTGATC----AT----CATC--AT-TGGTTTTAAA--------------TAGTATTCT--TAT-TTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTAATATAAACA-TGAATTTAA-CATGTTTATAATTATTTATATGATCAT-ACGTTTAAAAATCATATATAACTTATACAATCAACTTATTTTT----GATA-GTTGCTAACATATACGCAATTATAATGC
gi|10 : TTTGGCTGTTGAAGAAAGTC--ATATAAAGTCTGCATCAATATTAG-CAA-AT-AAAAA-TATTCAATTAAACAACTGGTTAAA-T-AAAAACAG-GAGTA--------TCTATATTTATA--------A-AATAAG-----------AAGTGTTTAAACTCCAAAGTGGGTAATC--ATCGTTTATCATCGTCGTCTTCATC----GT----CATC--AT-
gi|11 : ttagcaACATATGCGACG-CTT---GCAT--TCCTAA--ATTTTTATGATTATTACGTTTAATAATCATATATACCTTATAAATTCAATTTATTTTT----AATA-GTCGATAACATATACGTAATTATTATGC
gi|12 : gcctttcggtTTTAGTCATTAAAGAAAGTCTCATATAAAGTCTGCATCATTATTAA-TGA-AT-AAAAA-TATTCAATTAAACAACTAGTTAAA-T-AAAAATAA-AAATT--------TCTATATGTATATAAT----A-A--AAAAAAT-AATAACAAATATTTAAACTCCAAAGTaaacattatacaaaattatagcataa
gi|13 : ttaataCGTTAGCATTTGGTTGTTG------GTC--ATATAAAGTCTGCATC-------------------AA-TATT-------------AGC-AAA-T-AAAAATAG-GAGTA--------TCTATATTTATA----------------AAAT-A--A-TAAGTGTTTAAACTCCATAGCAGGTAATC--ATCGTTTATCATCGTCATCTTCAT
gi|14 : TATAT-AT----ATAATAAGA--T-A--A-TAAACACTGAAACCTCAA-GCAAATAATC--ATAG---GTCATTATCATTTT-ATC----ATAAATCATCGTAT-T--TTTTAAA--------------TAATCATCTGATAT-TTT
gi|16 : gTTCAACTT-TTTTTCTTAAATA-GTTGACAACATACACGCAATCATTATt
gi|17 : ----AATA-GTTGACGACATACACGCAATAATTATtattattgcgttgataacataagttacat
gi|18 : ATATGTTGACAACATACACGCAATTATTATtattgcgtttataacataagt
gi|2 : A-AT-AAAAG-TATTCAACTAAACAACTAGTTAAATT-AAAAATAGTAAATACNNNNNNNNNNNNNNNNNNNN-NN----N-NNNNNNNGAT-A--AATAAATAtattattgtgtttat
gi|2 : ACATATATG-CGA-TTTAAGCATGTTTGTAATCATTTATATGATTAT-ACGTTTTATAACCATATATACCTTATACATTCAACTTATTTCT----AATA-CTTGACAACATACAGGCAATTATAATgtcttcttatttttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcttttacactaaatataaacatgtttgcatcatatttggttatatattgtgtctttgtggacatatatgcgatttaagcatgtttgtaatcatttatatgattatacgttttataaccatatataccttatacattcaacttatttctaatacttgacaacatacaggcaattataattattattgcgtttataacataa
gi|3 : aataaaagtattcaactaaacaactagttaaattaaaaatagtaaatacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngataaataaatagtcttcttatttttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcttttacactaaatataaacatgtttgcatcatatttggttatatattgtgtctttgtggACATATATG-CGATTTTAAA-ATGTTTATAATCATTTTTATGATTAA-ACGTTAAATAATCATATATACCATATACATTCAACTTATTTTTTA--AATA-GTTGACAACATACAAGCAATTATTATtattattgcgtttataacataa
gi|4 : tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcatatttggttagatactgtgtctttgtggAAAGTC--ATATAAAGTCTGCATCAATATTAG-CAA-AT-AAAAA-TATTCAACTAAACAACTGGTTAAA-T-AAAAATAA-AAATA--------TCTATATTTATA--------A-AATAAG-----------AAATATTTAAACTCCAGGGTGGGTAATC--ATCGTTTATCATCGTCATCT---TC----AT----CATC--AT-TAGTTTTAAA--------------TAATCATCT--TAT-CTTtattattgcgtttataacata
gi|5 : TTAACATTTGGTTGTTGAAGAAGGTC--ATATAAAGTCTGCATCAATATTAG-CAA-AT-AAATA-TATTCAACCG--------GTTAAA-T-AAAAATAG-GAGTA--------TCTATAGTTATA--------A-AATAAGAAGT-G----------TTTAAACTCCAAAGTAGGTAATCGCATCGTTTATCGTCGTCATCTTCATC----AT----CATC--AT-TAGTTTTAAACCTTATTTTTTAAGTAATCATCT--TGT-TTTttaaaataatcatcttattttttaaaataatcatcttattttt
gi|6 : CGTCCATTTTTAGCCATCAAAGAATATCTCGTATAAAATCTGAATAAATATTAGTCAC-TT---AAA-TAATCAAATAAACTACTAGTTA-----AAACAT-----ATA--------TCTATATATTTAT-AT------AATAAAATAT------TAAACACTTAAACCTCATA-CAAATAATC--ATC---TGTCATAATCAT-TTTATCATAAAT----CATC--GTATTTTTTTAAA---------------AATCATCT--TATATTT
gi|7 : tCGTCAACTTTTAGTCAT--AAAAAAGTCTCATA--AAATCCGCATCAATATTAG-CAA-AT-AAAAA-TATTCAACTAAACAACTAGTTAAAAT-AAAAATAA-AAATA--------TCTATAT---------------AATAAAAAA-----AATAAATACCTAAACTCCAAAGTAAATAATC--ATCGTTCATCATCATCATCTTCATC----AT----CATC--AT-TGGTTTTAAA--------------TAATCATCT--TAT-TTtt
gi|8 : AAGAAAGTCCCATAATAAGTCTGCATCAATATTAA-CAACAA-AAAAACTATTCAACTAAACAACTAGTTAAA-TTAAAAATAATAAATA--------AATATATATATATGAT----A-AATAA--AAT-A--GATAA----TTAAACTCCAAAGTAAATAATC--ATCGT---CCATCATCATCTTAATC----AT----CATC--AT-TGGTTTTAAA--------------AAGTCTTCC--TA
gi|9 : TCAAAGAAAGTCCCATATAAAGTCTGCATCAATATAAG-CAA-ATAAAAAA-TATTCAACTAAACAACTAGTTAAA-A-AAAAAANN-NNNNN--------NNNNNNNNNNNNN-NN----N-NNNNATAAATAA--AACAGATAATTAAACTCCTAAGTAAATAATC--ATCGT---TCATCATCATCT----------T----CATC--AT-TGGTTTTAAA--------------TAGTCGTCT--TAT-Taatt
blockSeqs : A TG T T C A C TT GT CNNNNNNN T TAATAAAAAAAATAATAA T GC TTA TC ATAA AAAT GT A A CCTTATTTTTTAAGT GA A A AT T GC G TC T T CTTA T
blockSeqs : A TA T . . . . AT AT . G NNNNNNNNATAAATAAAA T . TTA TC . . . . A T . . . C T GC G TC A . TA .
blockSeqs : T TG T . . . . TT G . T NNNNNNNNNNNGATAAA T . TTA TC . . . . T T . . . A . A . . T . . .
blockSeqs : T TG C . . . . T A . N TGATAAATAAAATAGA C . TTA TT . . . . G T . . . .
blockSeqs : CA C . . . . T G . T TATATAATAAGATAA T . TCA TC . . . . G A . . . .
blockSeqs : CA . . . . . T A . T TATAATAAAATAT T . TG TA . . . . G T . . .
blockSeqs : . . . . . . T G . A AAATAAGAAGTG C . G T . . . . . . .
blockSeqs : . . . . . T A . A AATAAAAAAAA C . . . . . . .
blockSeqs : . . . . . A N . N AAATAAG A . . .
blockSeqs : . . . . . . . AAATAAG .
blockSeqs : AAATAA
blockSeqCons : T** G* TATAAATAAAATAAA*********** TTA
originalCons : CGTCAACTTTTGGTCGTCGAAGAAAGTCCCATATAAAGTCTGCATCAATATTAG-CAA-AT-AAAAA-TATTCAACTAAACAACTAGTTAAA-T-AAAAATAG-AAATA--------TCTATATNTATAT-AT----A-AATAAGAAAT-A--AATAAATATTTAAACTCCAAAGTAAATAATC--ATCGTTTATCATCGTCATCTTCATC----AT----CATC--AT-TGGTTTTAAA--------------TAATCATCT--TAT-TTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTAACATATACG-CGANTTTAAGCATGTTTATAATCATTTNTATGATTAT-ACGTTTAATAATCATATATACCTTATACATTCAACTTATTTTT----AATA-GTTGACAACATACACGCAATTATTATGC
finalCons : CGTCAACTTTTGGTCGTCGAAGAAAGTCCCATATAAAGTCTGCATCAATATTAG-CAA-AT-AAAAA-TATTCAACTAAACAACTAGTTAAAT--AAAAATAG-AAATA--------TCTATATNTATATATAAATAAAATAAA-----------TAAATATTTAAACTCCAAAGTAAATAATC--ATCGTTTATCATCGTCATCTTCATC----AT----CATC--AT-TGGTTTTAAA--------------TAATCATCT--TAT-TTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTAACATATACG-CGANTTTAAGCATGTTTATAATCATTTNTATGATTAT-ACGTTTAATAATCATATATACCTTATACATTCAACTTATTTTT----AATA-GTTGACAACATACACGCAATTATTATGC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACATACTCGGTAAATACTG
Alignments
lowQualScore : 1 111 11111111111 1111111111 222222 111111111111111 111 222222222222222 777777777777777777777777777777777777777777777777777777777777777777777777 1 11 1 2222
lowQualScore : 1 0 55 4 4 3 3 7 000 22222222222 5555555555 4 888888 888888888888888 2 1 55 111 77 9999 9999 66 4 3 999999999999999 66 5 222222222222222222222222222222222222222222222222222222222222222222222222 0 44 3 99 2 0 33 1 0 0 3333 5
lowQualScore : . . .. . . . . . ... ........... .......... . ...... ............... . . .. ... .. .... .... .. . . ............... .. . ........................................................................ . .. . .. . . .. . . . .... .
lowQualScore : 4 4 44 8 0 6 6 3 111 99999999999 9999999999 5 888888 666666666666666 9 8 55 444 44 4444 4444 11 4 4 888888888888888 99 7 000000000000000000000000000000000000000000000000000000000000000000000000 0 00 2 00 5 8 55 0 0 8 3333 7
consensus : CGTCAACTTTTGGTCGTCGAAGAAAGTCCCATATAAAGTCTGCATCAATATTAG-CAA-AT-AAAAA-TATTCAACTAAACAACTAGTTAAA-T-AAAAA-------TAG-AAATA----------TCTATATNTATAT-ATA-AATAAA------AT-A--AATAAATATTTAAACTCCAAAGTAAATAATC--ATCGTTTATCATCGTCATCTTCATC----AT----CATC--AT-TGGTTTTAAA--------------TAATCATCT--TAT-TTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTAACATATACG-CGANTTTAAGCATGTTTATAATCATTTNTATGATTAT-ACGTTTAATAATCATATATACCTTATACATTCAACTTATTTTT----AATA-GTTGACAACATACACGCAATTATTATGC
Reference ( family-7105 ) : CGTCAACTTTTGGTCGTCGAAGAAAGTCCCATATAAAGTCTGCATCAATATTAG-CAA-AT-AAAAA-TATTCAACTAAACAACTAGTTAAA-T-AAAAA-------TAG-AAATA----------TCTATATNTATAT-ATA-AATAAA------AT-A--AATAAATATTTAAACTCCAAAGTAAATAATC--ATCGTTTATCATCGTCATCTTCATC----AT----CATC--AT-TGGTTTTAAA--------------TAATCATCT--TAT-TTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTAACATATACG-CGANTTTAAGCATGTTTATAATCATTTNTATGATTAT-ACGTTTAATAATCATATATACCTTATACATTCAACTTATTTTT----AATA-GTTGACAACATACACGCAATTATTATGC
gi|1 : CGTCAACTTATAGTCCTCAAAGAAAGTCCCATATAAAGTCTGCATCAATATTAA-CGA-AT-AAAAACTATTCAACTAAACAACTAGTTAAA-TTAAAAA-------TAATAAATA----------TATATATATATAT-ATT-AATAAATGACAAATTA--AATAGATAATTAAACTCCAAAGTAAATAATC--ATCGTT---CATAATCATCTTGATC----AT----CATC--AT-TGGTTTTAAA--------------TAGTATTCT--TAT-TTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTAATATAAACA-TGAATTTAA-CATGTTTATAATTATTTATATGATCAT-ACGTTTAAAAATCATATATAACTTATACAATCAACTTATTTTT----GATA-GTTGCTAACATATACGCAATTATAATGC
gi|10 : TTTGGCTGTTGAAGAAAGTC--ATATAAAGTCTGCATCAATATTAG-CAA-AT-AAAAA-TATTCAATTAAACAACTGGTTAAA-T-AAAAA-------CAG-GAGTA----------TCTATATTTATA----A-AATAAG---------------AAGTGTTTAAACTCCAAAGTGGGTAATC--ATCGTTTATCATCGTCGTCTTCATC----GT----CATC--AT-
gi|11 : ttagcaACATATGCGACG-CTT---GCAT--TCCTAA--ATTTTTATGATTATTACGTTTAATAATCATATATACCTTATAAATTCAATTTATTTTT----AATA-GTCGATAACATATACGTAATTATTATGC
gi|12 : gcctttcggtTTTAGTCATTAAAGAAAGTCTCATATAAAGTCTGCATCATTATTAA-TGA-AT-AAAAA-TATTCAATTAAACAACTAGTTAAA-T-AAAAA-------TAA-AAATT----------TCTATATGTATATAATA-AAAAAA------AT-AATAACAAATATTTAAACTCCAAAGTaaacattatacaaaattatagcataa
gi|13 : ttaataCGTTAGCATTTGGTTGTTG------GTC--ATATAAAGTCTGCATC-------------------AA-TATT-------------AGC-AAA-T-AAAAA-------TAG-GAGTA----------TCTATATTTATA----------AA------AT-A--A-TAAGTGTTTAAACTCCATAGCAGGTAATC--ATCGTTTATCATCGTCATCTTCAT
gi|14 : TATAT-ATATAATAAG------AT-A--A-TAAACACTGAAACCTCAA-GCAAATAATC--ATAG---GTCATTATCATTTT-ATC----ATAAATCATCGTAT-T--TTTTAAA--------------TAATCATCTGATAT-TTT
gi|16 : gTTCAACTT-TTTTTCTTAAATA-GTTGACAACATACACGCAATCATTATt
gi|17 : ----AATA-GTTGACGACATACACGCAATAATTATtattattgcgttgataacataagttacat
gi|18 : ATATGTTGACAACATACACGCAATTATTATtattgcgtttataacataagt
gi|2 : A-AT-AAAAG-TATTCAACTAAACAACTAGTTAAATT-AAAAA-------TAGTAAATACNNNNNNNNNNNNNNNNNNNNNN-NNN-NNNNNG------AT-A--AATAAATAtattattgtgtttat
gi|2 : ACATATATG-CGA-TTTAAGCATGTTTGTAATCATTTATATGATTAT-ACGTTTTATAACCATATATACCTTATACATTCAACTTATTTCT----AATA-CTTGACAACATACAGGCAATTATAATgtcttcttatttttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcttttacactaaatataaacatgtttgcatcatatttggttatatattgtgtctttgtggacatatatgcgatttaagcatgtttgtaatcatttatatgattatacgttttataaccatatataccttatacattcaacttatttctaatacttgacaacatacaggcaattataattattattgcgtttataacataa
gi|3 : aataaaagtattcaactaaacaactagttaaattaaaaatagtaaatacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngataaataaatagtcttcttatttttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcttttacactaaatataaacatgtttgcatcatatttggttatatattgtgtctttgtggACATATATG-CGATTTTAAA-ATGTTTATAATCATTTTTATGATTAA-ACGTTAAATAATCATATATACCATATACATTCAACTTATTTTTTA--AATA-GTTGACAACATACAAGCAATTATTATtattattgcgtttataacataa
gi|4 : tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcatatttggttagatactgtgtctttgtggAAAGTC--ATATAAAGTCTGCATCAATATTAG-CAA-AT-AAAAA-TATTCAACTAAACAACTGGTTAAA-T-AAAAA-------TAA-AAATA----------TCTATATTTATA----A-AATAAG---------------AAATATTTAAACTCCAGGGTGGGTAATC--ATCGTTTATCATCGTCATCT---TC----AT----CATC--AT-TAGTTTTAAA--------------TAATCATCT--TAT-CTTtattattgcgtttataacata
gi|5 : TTAACATTTGGTTGTTGAAGAAGGTC--ATATAAAGTCTGCATCAATATTAG-CAA-AT-AAATA-TATTCAACCG--------GTTAAA-T-AAAAA-------TAG-GAGTA----------TCTATAGTTATA----------AA------AT-A--AG-AAGTGTTTAAACTCCAAAGTAGGTAATCGCATCGTTTATCGTCGTCATCTTCATC----AT----CATC--AT-TAGTTTTAAACCTTATTTTTTAAGTAATCATCT--TGT-TTTttaaaataatcatcttattttttaaaataatcatcttattttt
gi|6 : CGTCCATTTTTAGCCATCAAAGAATATCTCGTATAAAATCTGAATAAATATTAGTCAC-TT---AAA-TAATCAAATAAACTACTAGTTA-----AAACA-------T-----ATA----------TCTATATATTTAT-AT--AATAAA------AT----ATTAAACACTTAAACCTCATA-CAAATAATC--ATC---TGTCATAATCAT-TTTATCATAAAT----CATC--GTATTTTTTTAAA---------------AATCATCT--TATATTT
gi|7 : tCGTCAACTTTTAGTCAT--AAAAAAGTCTCATA--AAATCCGCATCAATATTAG-CAA-AT-AAAAA-TATTCAACTAAACAACTAGTTAAAAT-AAAAA-------TAA-AAATA----------TCTATAT-----------AATAAA------AA-A--AATAAATACCTAAACTCCAAAGTAAATAATC--ATCGTTCATCATCATCATCTTCATC----AT----CATC--AT-TGGTTTTAAA--------------TAATCATCT--TAT-TTtt
gi|8 : AAGAAAGTCCCATAATAAGTCTGCATCAATATTAA-CAACAA-AAAAACTATTCAACTAAACAACTAGTTAAA-TTAAAAA-------TAATAAATA----------AATATATATATATGATA-AATAAA------AT-A--GATAA----TTAAACTCCAAAGTAAATAATC--ATCGT---CCATCATCATCTTAATC----AT----CATC--AT-TGGTTTTAAA--------------AAGTCTTCC--TA
gi|9 : TCAAAGAAAGTCCCATATAAAGTCTGCATCAATATAAG-CAA-ATAAAAAA-TATTCAACTAAACAACTAGTTAAA-A-AAAAAANNNNNNNNN-NNNNN----------NNNNNNNNNNNNN-ATA-AATAAA------AC-A--GATAA----TTAAACTCCTAAGTAAATAATC--ATCGT---TCATCATCATCT----------T----CATC--AT-TGGTTTTAAA--------------TAGTCGTCT--TAT-Taatt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACATACTCGGTAAATACTG