lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111
lowQualScore : 2222222222222222 1111 5555555555555555555555555555555555555555555555555555555555555555555555 111111 000000000000000000000000000000000000 111 1111
lowQualScore : 555 7777 5555555555555555 1 5 0 99999 33 4 777 55 77777 0000 6666666666666666666666666666666666666666666666666666666666666666666666 6 3 999999 1 666666666666666666666666666666666666 6 3 6 5 444 7777 1 8 11 0 8 0 2
lowQualScore : ... .... ................ . . . ..... .. . ... .. ..... .... ...................................................................... . . ...... . .................................... . . . . ... .... . . .. . . . .
lowQualScore : 888 1111 5555555555555555 1 4 4 11111 88 0 000 55 66666 6666 2222222222222222222222222222222222222222222222222222222222222222222222 7 5 222222 0 333333333333333333333333333333333333 7 8 0 0 000 0000 4 0 44 8 0 8 5
consensus : TATCGTTTATTCAGAAATTCCAATAGGCCAT---AAGACCCGTGA----GGATACAACAT--------ACAATGCATATTTACAATTGATACAA-----CAAATGGTGCAGTAATTGCATGTGAAATG-TGTACAAC---TAAA--TACAACGCACA-G---ACGT----ACTCTNNNNNACNAANGNNNNNNTAATTACATAAAAACGTGTACAGTTAATGGAGCGC--------------GCGCGCG-CACATATTTGCACATGAACAGGC------ACGCACGTAAACACACTTATTATGTTCTTGTTTTCTTCATTTCAGTGTCAT--------ATAA-CAAA-ACA---------------CTG-TTTCGTAATTTTCGTCTTATTTGTGCGGAGAAGGTGACATATTTCAATCATAATTTAGTATTGCTGATGAAAATATTCCAAACATATAAACTGTTAATACA---ATAT----TTGAATTTAGATGCAATTGT-ATTCAAAAATGTTTTCTATGTTATTG-TTTTTATATTTCATATAAGTTATGTAAACTTGTAACATAGCANTGTAAGTTGGGTTAACTGAATATTTCATTTTTCTTTAT
Reference ( gi|2 ) : TATCGTTTATTCAGAAATTCCAATAGGCCAT---AAGACCCATGA----GGATACAACAT--------ACAATGCATATTTACAACTGATACAA-----CAAATGGTGCAGTAATTGCATGTGAAATG-TGTACAAC---TAAA--TACAACGCACA-G---ACGT----ACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------------GCGCGCG-CACATATTTGCACATGAACAGGC------ACGCACATAAACACACTTATTATGTTCTTGTTTTCTTCATTTCAGTGTCAT--------A---------ACA---------------CTG-TTTCGTAATTTTCGTCTTATTTGTGCGGAGAAGGTGACATATTTCAATCATAATTTAGTATTGCTAATGACAATATTCCAAACATATAAACTGTTAATACA---ATAT----TTGAATTTAGATGCAATTGT-ATTCAAAAATGTTTTCTATGTTATTG-TTTTTATATTTCATATAAGTTATGTAAACTTGTAACATAGCAGTGTAAGTTGGGTTAACTGAATATTTCATTTTTCTTTAT
gi|4 : TATCGTTTATTCAGAAATTCCAAAAGGCCAT---AAGACCCATGA----TGATACAACAT--------ACAATGCATATTTACAATTGATACAA-----CAAATGGTGCAGTAATTGCATGTGAAATG-TGTACAAC---TAAA--TACAACGCACA-G---ACGT----ACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------GCGCGCG-CACATATTTGCACATGAACAGGC------ACGCACATAAACACACTTATTATGTTCTTGTTTTCTTCATTTCAGTGTCAT--------A---------ACA---------------CTG-TTTCGTAATTTTCGTCTTATTTGTGCTGAGAAGGTGACATATTTCAATCATAATTTAGTATTGCTGATGACAATATTCCAAACATATAAACTGTTAATACA---ATAT----TTGAATTTAGATGCAATTGT-ATTCAAAAATGTTTTCTATGTTATTG-TTTTTATATTTCATATAAGTTATGTAAACTTGTAACATAGCAGTGTAAGT
gi|3 : taaTATCGTTTATTCAGAAATTCCAATAGGCCAT---AAGACCCATGA----GGATACAACAT--------ACAATGCATATTTACAATTGATACAA-----CAAATGGTGCAGTAGTTGCATGTGAAATG-TGTAAAAC---TAAT--TACA------------ACGC----AC------------AGACGTACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGC--------------GCGCGCG-CACATATTTGCACATGAACAGGC------ACGCACATAAACACAATTATCATGTTCTTGTTTTCTTCATTTCAGTGTCATATAATCATA---------ACA---------------CTG-TTTCGTAATTTTCGTCATATTTGTGCGGAGAAGGTGACATATTTCAATCATAATTTAGTATTGCTGATGAAAATATTCCAAACATATAAACTGTTAATACA---ATAT----TTGAATTTAGATGCAATTGT-ATTCAAAAATGTTTTCTATGATATTGTTTTTTATATTTCATATAGGTTATGTAAACTTGTAACATAGCATTGTAAGTTGGGTTAACTGAATATTTTATTTTTCTTTAT
gi|12 : TATCGTTTATTCAGAAATTCCAATAGGCCAT---AAGACCCATGA----GGATACAACAT--------ACAATACATATTTACAATTGATACAA-----CAAATGGTGCAGTAATTGCATGTGAAATG-TGTACAAC---TAAA--TACAACGCACA-G---ACG
gi|10 : ataaTATCATTTATTCCGAAATACCAATAGGCCAT---AAGACCCATGA----GGATACAACAT--------AGTATCCATATTTACAGTTGATACAA-----CAAATGATGCAGTAATTACAGGTTAAATG-TGTACAAC---TAAA--TACAACGCACA-G---ACGT----ACT
gi|5 : ataTATCATTTATTCCGAAATACCAATAGGCCAT---AAGACCCATGA----GGATACAACAT--------AGTATCCATATTTACAGTTGATACAA-----CAAATGATGCAGTAATTACAGGTTAAATG-TGTACAAC---TAAA--TACAACGCACA-G---ACGT----ACTaatacactcacacacattcatgcatatttcatgatatgggcccaatagaata
gi|7 : gaccacaaattgttacccgatcgagtgcacacactagtgtgtttattgtagttatattggtgtttatgcatctgtttcttttatgtttaacactgctatatatattcgggtgagtgggacgacaagagaccgaaacccccgtggccgtggcattccttgctatcccaacgccatcatactgggaaaatatcctgggttaacctttcattaagctccactttcgatgaggcgctaacaatcaacacttgactgttcaaggcaggcctcaacacatggtgttgatatgataATCGTTTATTAAGATATTCCAATAAGTCAT---ATGACCTGTGA----GGATACAACA------------------AGTTACACTTTATATAA-----TAGGTCGTGCAAGAATAACATG-AAAATA-TGCACAGA---TAGA--TACAACAAACA-T---ACGaatacactcacacacattcatgcatatttcatgatataggcccaatagaataa
gi|9 : ATCGTTTATTAAGAAATTCCAGACGGCCAT---AAAACATGTGA----CGATA-AA-------------AATG-----TTACTATTTATATAA-----CAAATGGTGCAATAATTcgcaacacacatacataaacacacacgcacgcaaacacatttattatatcactgttttcgtcttttcagtgttatataaataaatacataataaaataaaatcctgatttcataaatatcgtattatttgtacagagaaggtgacatatttcattcgcaatttattattgctgacgaaaatatcacaaacatataaactgtttgtatagttacatgtaattgaattgagatgcatttgtgattaatgttccattaatatttttaattt
gi|13 : ttgttttaaaggtttccgagcatatacagaacagaattttattcaatatatcttgaacataaacagttcatcgttatttacacaaacaatacaaaacatgcgcgcagcaatacgagaatgaacataaatatgtcacataatatagatagaaTCGATTATTAAGAATTTCTAATAGGCCAT---AAGACGCGCGAGCCTGGATTCAA----------------GAAGA--TACAATTTATATAA-----CAAATGGTa
gi|1 : ttttagatagtgccggCGTTTATTCAGAAATTCCAATAGGCCAT---AAGACCCATGA----GGATACAACAT--------ACAATGCATATTTACAATTGATACAA-----CAAATGGTGCAGTAATTGCATGTGAAATG-TGTTCAAC---TAAA--TACAACGCACA-G---ACGT----ACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGCGCG-CACATATTTGCACATGAACAGGC------ACGCACATAAACACACTTATTATGTTCTTGTTTTCTTCATTTCAGTGTCAT--------A---------ACA---------------CTG-TTTCGTAATTTTCGTCTTATTTGTGCGGAGAAGGTGACATATTTCAATCATAATTTAGTATTGCTGATGACAATATTCCAAACATATAAACTGTTAATACA---ATAT----TTTAATTTAGATGCAATTGT-ATTCAAAAATGTTTTCTATGTTATTG-TTTTTATATTTCATATAAGTTATGTAAACTTGTAACATAGCAGTGTAAGTTGGATTAACTGAATATTTCATTTTTCTTTATtaa
gi|11 : CGTTTAGTCATAAATTCTAATAGGCCATGATAATACTTGTGA----GGGTA-AGCA-----------------------CAGCTGATACAA-----CAGATGTTGCATTTATTATATGTAAATTG-TTAACATG---TAAG--TACAACGTACA-A---TCGC----ACT
gi|8 : gaGTTTATTAAGAAATTCCAAAAGCTCAT---A-GATTTAT---------T-CAATATTTTATTCAGCATTAGATATTTA------ATACAAACGTTTAAAGCCTAAAATAAT--CATG--AAATGCTGTAAGACCTGTAAAGATACAATAT----G---ATAT----AATTTATATAACAAATGGTGCAATAATTACATAAAAACGTGTACAGTTAATGGAACGC--------------ACGCACG-TACATACACACACATACACGTGCGTGAACACGTACGTAAACACAGTTGTCATATAATTGTTTTCGCCATTCCAATGTCAT--------ATAATCAGA-GCA---------------ATG-TTTCATAATTATCGTATTATTTGTGCGGAGAAGGTATCATATaacacgcacacgcacacgcacacacgcgtg
gi|14 : taGTTTTTACATAAATTGAAATAGGCCAT---AACACCTGTGA----GGATACAGCAT--------GTGATATTTATTAACAATCTACACA
gi|6 : tAATA-CGTACAAC---CAAA--TACAACGCACACGCTCACGCTCACACACTCACATACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG--------------ACGCGCG-CACATATTTGCACATGTATAGGC------ACTCACATAAACACACTTATTATGTTCTTGTTTTCTTCATTTCAGTGTCAC--------ATAATCAAA-ACA---------------CTA-TTTCGTAACTTTCGTCTTATTTGTGCAGAGAAGGTGACATATTTCAATC-CAATTTAGTATTGCTGATGAAAATATTCCAGGCATGTAAACTGTTAATATA---ATAA----TTGAATTTAGATGCATTTGT-ATTCAAAAAGGTGTTCTTTATTATTG-TTTTTATATTTCATATAAGTTATGTAAACTTGTAACATAGCATTGTAAGTTGGGTTAACTGAATATTTCATTTTTCTTTAT
gi|7 : CGCGCAACACACAT----ACATAAACACAC------ACGCACGCAAACACATTTATTATATCACTGTTTTCGTCTTTTCAGTGTTAT--------ATAAATAAATACATAATAAAATAAAATCCTGATTTCATAAATATCGTATTATTTGTACAGAGAAGGTGACATATTTCATTCGCAATTTATTATTGCTGACGAAAATATCACAAACATATAAACTGTTTGTATAGTTACATGTAATTGAATTGAGATGCATTTGTGATT----AATG--TTCCA--TTAATA-TTTTTA-ATTT
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): TTGCCAAGAAGCAGAAGCTACTTCGTATATGACAGTCATTATATCTCCATCCAGACACAAATGGATTTAAAAATT
Unaligned ( gi|16 ): ATAAGACAGAACAGGAAATGACTTTTATTCAATATAGCATGAACATGATGAGATCATCGTTATCCATATAAAG
Unaligned ( gi|17 ): AACAGAATTTAATTCAATATATTTTGAACATAATAATTATATAGTTTTCGCCCGTTTATTTACACAAACA
Alignments
lowQualScore : 1111111 6666666666666666666666666666 111111 7777777777777777777 11111 111 1111
lowQualScore : 555 2 6666 9999 4444 0 3 88888 11 3 666 55 3 666 9999 9999999 11 1 666666 1 0 00 0 1 6666666666666666666666666666 5 1 666666 1 3333333333333333333 44444 5 1 3 111 4444 6 6 1
lowQualScore : ... . .... .... .... . . ..... .. . ... .. . ... .... ....... .. . ...... . . .. . . ............................ . . ...... . ................... ..... . . . ... .... . . .
lowQualScore : 444 5 5555 5555 5555 3 1 33333 55 6 444 00 6 444 4444 0000000 22 0 000000 9 3 33 3 9 4444444444444444444444444444 7 7 444444 4 7777777777777777777 33333 7 7 0 777 2222 7 7 0
consensus : TATCGTTTATTCAGAAATTCCAATAGGCC---ATAAGACCCGTGA----GGATACAACATACAATGCA-TATT-TACAATTGATACAA-----CAAATGGTGCAGTAATTGCATGTGAAATG-TGTACAAC---TAAA--TACAACGCACA-G---ACGT----ACTCTNNNNNACAGACGNNNCAATAATNACATGAAAACGTGCACAGNTA-ATG----GAACGC--------------GCGCGCG-CACATATTTGCACATGAACAGG------CACGCACGTAAACACACTTATTATGTTCTTGTTTTCTTCATTTCAGTGTCATATAAT-----------CA-AACA-----CTG-TTTCGTAATTTTCGTCTTATTTGTGCGGAGAAGGTGACATATTTCAATCATAATTTAGTATTGCTGATGANAATATTCCAAACATATAAACTGTTAATACA---ATAT----TTGAATTTAGATGCAATTGT-ATTCAAAAATGTTTTCTATGTTATTG-TTTTTATATTTCATATAAGTTATGTAAACTTGTAACATAGCAGTGTAAGTTGGGTTAACTGAATATTTCATTTTTCTTTAT
Reference ( family-673 ) : TATCGTTTATTCAGAAATTCCAATAGGCC---ATAAGACCCGTGA----GGATACAACATACAATGCA-TATT-TACAATTGATACAA-----CAAATGGTGCAGTAATTGCATGTGAAATG-TGTACAAC---TAAA--TACAACGCACA-G---ACGT----ACTCTNNNNNACNAANGNNNNNNTAATTACATAAAAACGTGTACAGTTA-ATG----GAGCGC--------------GCGCGCG-CACATATTTGCACATGAACAGG------CACGCACGTAAACACACTTATTATGTTCTTGTTTTCTTCATTTCAGTGTCATATAA------------CAAAACA-----CTG-TTTCGTAATTTTCGTCTTATTTGTGCGGAGAAGGTGACATATTTCAATCATAATTTAGTATTGCTGATGAAAATATTCCAAACATATAAACTGTTAATACA---ATAT----TTGAATTTAGATGCAATTGT-ATTCAAAAATGTTTTCTATGTTATTG-TTTTTATATTTCATATAAGTTATGTAAACTTGTAACATAGCANTGTAAGTTGGGTTAACTGAATATTTCATTTTTCTTTAT
gi|1 : CGTTTATTCAGAAATTCCAATAGGCC---ATAAGACCCATGA----GGATACAACATACAATGCA-TATT-TACAATTGATACAA-----CAAATGGTGCAGTAATTGCATGTGAAATG-TGTTCAAC---TAAA--TACAACGCACA-G---ACGT----ACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNN----NNNNNNNNNNNNNNNNNNNNGCGCGCG-CACATATTTGCACATGAACAGG------CACGCACATAAACACACTTATTATGTTCTTGTTTTCTTCATTTCAGTGTCATA-------------------ACA-----CTG-TTTCGTAATTTTCGTCTTATTTGTGCGGAGAAGGTGACATATTTCAATCATAATTTAGTATTGCTGATGACAATATTCCAAACATATAAACTGTTAATACA---ATAT----TTTAATTTAGATGCAATTGT-ATTCAAAAATGTTTTCTATGTTATTG-TTTTTATATTTCATATAAGTTATGTAAACTTGTAACATAGCAGTGTAAGTTGGATTAACTGAATATTTCATTTTTCTTTAT
gi|10 : TATCATTTATTCCGAAATACCAATAGGCC---ATAAGACCCATGA----GGATACAACATAGTATCCA-TATT-TACAGTTGATACAA-----CAAATGATGCAGTAATTACAGGTTAAATG-TGTACAAC---TAAA--TACAACGCACA-G---ACGT----ACT
gi|11 : ataCGTTTAGTCATAAATTCTAATAGGCCATGATAATACTTGTGA----GGGTA-AGC-----------------ACAGCTGATACAA-----CAGATGTTGCATTTATTATATGTAAATTG-TTAACATG---TAAG--TACAACGTACA-A---TCGC----ACTaatacactcacacacattcatgcatatttcatgatatgggcccaatagaata
gi|12 : gaTATCGTTTATTCAGAAATTCCAATAGGCC---ATAAGACCCATGA----GGATACAACATACAATACA-TATT-TACAATTGATACAA-----CAAATGGTGCAGTAATTGCATGTGAAATG-TGTACAAC---TAAA--TACAACGCACA-G---ACGaacacgcacacgcacacgcacacacgcgtg
gi|13 : ataaTCGATTATTAAGAATTTCTAATAGGCC---ATAAGACGCGCGAGCCTGGATTCAA--------GAA-GA---TACAATTTATATAA-----CAAATGGT
gi|14 : ttttagatagtgccggGTTTTTACATAAATTGAAATAGGCC---ATAACACCTGTGA----GGATACAGCATGTGATATT-TATT-AACAATCTACACAtaa
gi|2 : tTATCGTTTATTCAGAAATTCCAATAGGCC---ATAAGACCCATGA----GGATACAACATACAATGCA-TATT-TACAACTGATACAA-----CAAATGGTGCAGTAATTGCATGTGAAATG-TGTACAAC---TAAA--TACAACGCACA-G---ACGT----ACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNN----NNNNNN--------------GCGCGCG-CACATATTTGCACATGAACAGG------CACGCACATAAACACACTTATTATGTTCTTGTTTTCTTCATTTCAGTGTCATA-------------------ACA-----CTG-TTTCGTAATTTTCGTCTTATTTGTGCGGAGAAGGTGACATATTTCAATCATAATTTAGTATTGCTAATGACAATATTCCAAACATATAAACTGTTAATACA---ATAT----TTGAATTTAGATGCAATTGT-ATTCAAAAATGTTTTCTATGTTATTG-TTTTTATATTTCATATAAGTTATGTAAACTTGTAACATAGCAGTGTAAGTTGGGTTAACTGAATATTTCATTTTTCTTTAT
gi|3 : TATCGTTTATTCAGAAATTCCAATAGGCC---ATAAGACCCATGA----GGATACAACATACAATGCA-TATT-TACAATTGATACAA-----CAAATGGTGCAGTAGTTGCATGTGAAATG-TGTAAAAC---TAAT--TACAACGC--------------------------ACAGACGTACTNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNN----G--CGC--------------GCGCGCG-CACATATTTGCACATGAACAGG------CACGCACATAAACACAATTATCATGTTCTTGTTTTCTTCATTTCAGTGTCATATAAT-----------CATAACA-----CTG-TTTCGTAATTTTCGTCATATTTGTGCGGAGAAGGTGACATATTTCAATCATAATTTAGTATTGCTGATGAAAATATTCCAAACATATAAACTGTTAATACA---ATAT----TTGAATTTAGATGCAATTGT-ATTCAAAAATGTTTTCTATGATATTGTTTTTTATATTTCATATAGGTTATGTAAACTTGTAACATAGCATTGTAAGTTGGGTTAACTGAATATTTTATTTTTCTTTAT
gi|4 : TATCGTTTATTCAGAAATTCCAAAAGGCC---ATAAGACCCATGA----TGATACAACATACAATGCA-TATT-TACAATTGATACAA-----CAAATGGTGCAGTAATTGCATGTGAAATG-TGTACAAC---TAAA--TACAACGCACA-G---ACGT----ACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNN----NNNNNNNNNNNN--------GCGCGCG-CACATATTTGCACATGAACAGG------CACGCACATAAACACACTTATTATGTTCTTGTTTTCTTCATTTCAGTGTCATA-------------------ACA-----CTG-TTTCGTAATTTTCGTCTTATTTGTGCTGAGAAGGTGACATATTTCAATCATAATTTAGTATTGCTGATGACAATATTCCAAACATATAAACTGTTAATACA---ATAT----TTGAATTTAGATGCAATTGT-ATTCAAAAATGTTTTCTATGTTATTG-TTTTTATATTTCATATAAGTTATGTAAACTTGTAACATAGCAGTGTAAGT
gi|5 : taaTATCATTTATTCCGAAATACCAATAGGCC---ATAAGACCCATGA----GGATACAACATAGTATCCA-TATT-TACAGTTGATACAA-----CAAATGATGCAGTAATTACAGGTTAAATG-TGTACAAC---TAAA--TACAACGCACA-G---ACGT----ACT
gi|6 : gaccacaaattgttacccgatcgagtgcacacactagtgtgtttattgtagttatattggtgtttatgcatctgtttcttttatgtttaacactgctatatatattcgggtgagtgggacgacaagagaccgaaacccccgtggccgtggcattccttgctatcccaacgccatcatactgggaaaatatcctgggttaacctttcattaagctccactttcgatgaggcgctaacaatcaacacttgactgttcaaggcaggcctcaacacatggtgttgatatgataAATA-CGTACAAC---CAAA--TACAACGCACACGCTCACGCTCACACACTCACATACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNN----NNNNNG--------------ACGCGCG-CACATATTTGCACATGTATAGG------CACTCACATAAACACACTTATTATGTTCTTGTTTTCTTCATTTCAGTGTCACATAAT-----------CAAAACA-----CTA-TTTCGTAACTTTCGTCTTATTTGTGCAGAGAAGGTGACATATTTCAATC-CAATTTAGTATTGCTGATGAAAATATTCCAGGCATGTAAACTGTTAATATA---ATAA----TTGAATTTAGATGCATTTGT-ATTCAAAAAGGTGTTCTTTATTATTG-TTTTTATATTTCATATAAGTTATGTAAACTTGTAACATAGCATTGTAAGTTGGGTTAACTGAATATTTCATTTTTCTTTATaatacactcacacacattcatgcatatttcatgatataggcccaatagaataa
gi|7 : ATCGTTTATTAAGATATTCCAATAAGTC---ATATGACCTGTGA----GGATACAACA-----------AGT-TACACTTTATATAA-----TAGGTCGTGCAAGAATAACATG-AAAATA-TGCACAGA---TAGA--TACAACAAACA-T---ACG
gi|7 : AATAACATGAAAATATGCACAGATAGATACAACAAACAT--------------ACGCGCAACACACAT----ACATAAACACA------CACGCACGCAAACACATTTATTATATCACTGTTTTCGTCTTTTCAGTGTTATATAAATAAATACATAATAAAATAAAATCCTGATTTCATAAATATCGTATTATTTGTACAGAGAAGGTGACATATTTCATTCGCAATTTATTATTGCTGACGAAAATATCACAAACATATAAACTGTTTGTATAGTTACATGTAATTGAATTGAGATGCATTTGTGATT----AATG--TTCCA--TTAATA-TTTTTA-ATTTcgcaacacacatacataaacacacacgcacgcaaacacatttattatatcactgttttcgtcttttcagtgttatataaataaatacataataaaataaaatcctgatttcataaatatcgtattatttgtacagagaaggtgacatatttcattcgcaatttattattgctgacgaaaatatcacaaacatataaactgtttgtatagttacatgtaattgaattgagatgcatttgtgattaatgttccattaatatttttaattt
gi|8 : atcgtttattaagatattccaataagtcatatgacctgtgaggatacaacaagttacactttatataataggtcgtgcaagGTTTATTAAGAAATTCCAAAAGCTC---ATA-GATTT----------ATTCAATATTTTATTCAGCATTAGATATTTAATACAAACGTTTAAAGCCTAAAATAAT--CATG--AAATGCTGTAAGACCTGTAAAGATACAATAT----G---ATAT----AATTTATATAACAAATGGTGCAATAATTACATAAAAACGTGTACAGTTA-ATG----GAACGC--------------ACGCACG-TACATACACACACATACACGTGCGTGAACACGTACGTAAACACAGTTGTCATATAATTGTTTTCGCCATTCCAATGTCATATAAT-----------CAGAGCA-----ATG-TTTCATAATTATCGTATTATTTGTGCGGAGAAGGTATCATAT
gi|9 : taATCGTTTATTAAGAAATTCCAGACGGCC---ATAAAACATGTGA----CGATA-AA-----AATG------T-TACTATTTATATAA-----CAAATGGTGCAATAATT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TTGCCAAGAAGCAGAAGCTACTTCGTATATGACAGTCATTATATCTCCATCCAGACACAAATGGATTTAAAAATT
Unaligned ( gi|16 ): ATAAGACAGAACAGGAAATGACTTTTATTCAATATAGCATGAACATGATGAGATCATCGTTATCCATATAAAG
Unaligned ( gi|17 ): AACAGAATTTAATTCAATATATTTTGAACATAATAATTATATAGTTTTCGCCCGTTTATTTACACAAACA
Alignments
lowQualScore : 66666666666666666666666666666666666666666666666666666666666666666666666666666666666 111111 555555555555555555555555555555 111 1111
lowQualScore : 555 2 6666 9999 4444 0 3 88888 11 3 666 44 66666666666666666666666666666666666666666666666666666666666666666666666666666666666 5 1 666666 1 222222222222222222222222222222 5 1 1 111 4444 6 6
lowQualScore : ... . .... .... .... . . ..... .. . ... .. ................................................................................... . . ...... . .............................. . . . ... .... . .
lowQualScore : 444 5 5555 5555 5555 3 1 33333 55 6 444 66 99999999999999999999999999999999999999999999999999999999999999999999999999999999999 7 7 444444 4 333333333333333333333333333333 7 7 0 777 2222 7 7
consensus : TATCGTTTATTCAGAAATTCCAATAGGCC---ATAAGACCCGTGA----GGATACAACATACAATGCA-TATT-TACAATTGATACAA-----CAAATGGTGCAGTAATTGCATGTGAAATG-TGTACAAC---TAAA--TACAACGCACAGACGTACTTTATATAAC----ANAC---GGTGCAANAATNACATGAAAACGTGCACAGNTA-ATG----GAACGC--------------G-CGCGCG-CACATATTTGCACATGAACAGG------CACGCACGTAAACACACTTATTATGTTCTTGTTTTCTTCATTTCAGTGTCATATAATCA-AA-CAC-----------------TG-TTTCGTAATTTTCGTCTTATTTGTGCGGAGAAGGTGACATATTTCAATCATAATTTAGTATTGCTGATGANAATATTCCAAACATATAAACTGTTAATACA---ATAT----TTGAATTTAGATGCAATTGT-ATTCAAAAATGTTTTCTATGTTATTG-TTTTTATATTTCATATAAGTTATGTAAACTTGTAACATAGCAGTGTAAGTTGGGTTAACTGAATATTTCATTTTTCTTTAT
Reference ( family-673 ) : TATCGTTTATTCAGAAATTCCAATAGGCC---ATAAGACCCGTGA----GGATACAACATACAATGCA-TATT-TACAATTGATACAA-----CAAATGGTGCAGTAATTGCATGTGAAATG-TGTACAAC---TAAA--TACAACGCACAGACGTACTCTNNNNNAC----AGAC---GNNNCAATAATNACATGAAAACGTGCACAGNTA-ATG----GAACGC--------------G-CGCGCG-CACATATTTGCACATGAACAGG------CACGCACGTAAACACACTTATTATGTTCTTGTTTTCTTCATTTCAGTGTCATATAATCA-AA-CAC-----------------TG-TTTCGTAATTTTCGTCTTATTTGTGCGGAGAAGGTGACATATTTCAATCATAATTTAGTATTGCTGATGANAATATTCCAAACATATAAACTGTTAATACA---ATAT----TTGAATTTAGATGCAATTGT-ATTCAAAAATGTTTTCTATGTTATTG-TTTTTATATTTCATATAAGTTATGTAAACTTGTAACATAGCAGTGTAAGTTGGGTTAACTGAATATTTCATTTTTCTTTAT
gi|1 : CGTTTATTCAGAAATTCCAATAGGCC---ATAAGACCCATGA----GGATACAACATACAATGCA-TATT-TACAATTGATACAA-----CAAATGGTGCAGTAATTGCATGTGAAATG-TGTTCAAC---TAAA--TACAACGCACAGACGTACTNNNNNNNNN----NNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNN----NNNNNNNNNNNNNNNNNNNNG-CGCGCG-CACATATTTGCACATGAACAGG------CACGCACATAAACACACTTATTATGTTCTTGTTTTCTTCATTTCAGTGTCATA--------A-CAC-----------------TG-TTTCGTAATTTTCGTCTTATTTGTGCGGAGAAGGTGACATATTTCAATCATAATTTAGTATTGCTGATGACAATATTCCAAACATATAAACTGTTAATACA---ATAT----TTTAATTTAGATGCAATTGT-ATTCAAAAATGTTTTCTATGTTATTG-TTTTTATATTTCATATAAGTTATGTAAACTTGTAACATAGCAGTGTAAGTTGGATTAACTGAATATTTCATTTTTCTTTAT
gi|10 : TATCATTTATTCCGAAATACCAATAGGCC---ATAAGACCCATGA----GGATACAACATAGTATCCA-TATT-TACAGTTGATACAA-----CAAATGATGCAGTAATTACAGGTTAAATG-TGTACAAC---TAAA--TACAACGCACAGACGTACT
gi|11 : ataCGTTTAGTCATAAATTCTAATAGGCCATGATAATACTTGTGA----GGGTA-AGC-----------------ACAGCTGATACAA-----CAGATGTTGCATTTATTATATGTAAATTG-TTAACATG---TAAG--TACAACGTACAATCGCACTaatacactcacacacattcatgcatatttcatgatatgggcccaatagaata
gi|12 : gaTATCGTTTATTCAGAAATTCCAATAGGCC---ATAAGACCCATGA----GGATACAACATACAATACA-TATT-TACAATTGATACAA-----CAAATGGTGCAGTAATTGCATGTGAAATG-TGTACAAC---TAAA--TACAACGCACAGACGaacacgcacacgcacacgcacacacgcgtg
gi|13 : ataaTCGATTATTAAGAATTTCTAATAGGCC---ATAAGACGCGCGAGCCTGGATTCAA--------GAA-GA---TACAATTTATATAA-----CAAATGGT
gi|14 : ttttagatagtgccggGTTTTTACATAAATTGAAATAGGCC---ATAACACCTGTGA----GGATACAGCATGTGATATT-TATT-AACAATCTACACAtaa
gi|2 : tTATCGTTTATTCAGAAATTCCAATAGGCC---ATAAGACCCATGA----GGATACAACATACAATGCA-TATT-TACAACTGATACAA-----CAAATGGTGCAGTAATTGCATGTGAAATG-TGTACAAC---TAAA--TACAACGCACAGACGTACTNNNNNNNNN----NNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNN----NNNNNN--------------G-CGCGCG-CACATATTTGCACATGAACAGG------CACGCACATAAACACACTTATTATGTTCTTGTTTTCTTCATTTCAGTGTCATA--------A-CAC-----------------TG-TTTCGTAATTTTCGTCTTATTTGTGCGGAGAAGGTGACATATTTCAATCATAATTTAGTATTGCTAATGACAATATTCCAAACATATAAACTGTTAATACA---ATAT----TTGAATTTAGATGCAATTGT-ATTCAAAAATGTTTTCTATGTTATTG-TTTTTATATTTCATATAAGTTATGTAAACTTGTAACATAGCAGTGTAAGTTGGGTTAACTGAATATTTCATTTTTCTTTAT
gi|3 : TATCGTTTATTCAGAAATTCCAATAGGCC---ATAAGACCCATGA----GGATACAACATACAATGCA-TATT-TACAATTGATACAA-----CAAATGGTGCAGTAGTTGCATGTGAAATG-TGTAAAAC---TAAT--TACAACGCACAGA----------------------C---GTACTNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNN----G--CGC--------------G-CGCGCG-CACATATTTGCACATGAACAGG------CACGCACATAAACACAATTATCATGTTCTTGTTTTCTTCATTTCAGTGTCATATAATCATAA-CAC-----------------TG-TTTCGTAATTTTCGTCATATTTGTGCGGAGAAGGTGACATATTTCAATCATAATTTAGTATTGCTGATGAAAATATTCCAAACATATAAACTGTTAATACA---ATAT----TTGAATTTAGATGCAATTGT-ATTCAAAAATGTTTTCTATGATATTGTTTTTTATATTTCATATAGGTTATGTAAACTTGTAACATAGCATTGTAAGTTGGGTTAACTGAATATTTTATTTTTCTTTAT
gi|4 : TATCGTTTATTCAGAAATTCCAAAAGGCC---ATAAGACCCATGA----TGATACAACATACAATGCA-TATT-TACAATTGATACAA-----CAAATGGTGCAGTAATTGCATGTGAAATG-TGTACAAC---TAAA--TACAACGCACAGACGTACTNNNNNNNNN----NNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNN----NNNNNNNNNNNN--------G-CGCGCG-CACATATTTGCACATGAACAGG------CACGCACATAAACACACTTATTATGTTCTTGTTTTCTTCATTTCAGTGTCATA--------A-CAC-----------------TG-TTTCGTAATTTTCGTCTTATTTGTGCTGAGAAGGTGACATATTTCAATCATAATTTAGTATTGCTGATGACAATATTCCAAACATATAAACTGTTAATACA---ATAT----TTGAATTTAGATGCAATTGT-ATTCAAAAATGTTTTCTATGTTATTG-TTTTTATATTTCATATAAGTTATGTAAACTTGTAACATAGCAGTGTAAGT
gi|5 : taaTATCATTTATTCCGAAATACCAATAGGCC---ATAAGACCCATGA----GGATACAACATAGTATCCA-TATT-TACAGTTGATACAA-----CAAATGATGCAGTAATTACAGGTTAAATG-TGTACAAC---TAAA--TACAACGCACAGACGTACT
gi|6 : gaccacaaattgttacccgatcgagtgcacacactagtgtgtttattgtagttatattggtgtttatgcatctgtttcttttatgtttaacactgctatatatattcgggtgagtgggacgacaagagaccgaaacccccgtggccgtggcattccttgctatcccaacgccatcatactgggaaaatatcctgggttaacctttcattaagctccactttcgatgaggcgctaacaatcaacacttgactgttcaaggcaggcctcaacacatggtgttgatatgataAATA-CGTACAAC---CAAA--TACAACGCACACGCTCACGCTCACACACTCACATACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNN----NNNNNN--------------GACGCGCG-CACATATTTGCACATGTATAGG------CACTCACATAAACACACTTATTATGTTCTTGTTTTCTTCATTTCAGTGTCACATAATCA-AAACAC-----------------TA-TTTCGTAACTTTCGTCTTATTTGTGCAGAGAAGGTGACATATTTCAATC-CAATTTAGTATTGCTGATGAAAATATTCCAGGCATGTAAACTGTTAATATA---ATAA----TTGAATTTAGATGCATTTGT-ATTCAAAAAGGTGTTCTTTATTATTG-TTTTTATATTTCATATAAGTTATGTAAACTTGTAACATAGCATTGTAAGTTGGGTTAACTGAATATTTCATTTTTCTTTATaatacactcacacacattcatgcatatttcatgatataggcccaatagaataa
gi|7 : ATCGTTTATTAAGATATTCCAATAAGTC---ATATGACCTGTGA----GGATACAACA-----------AGT-TACACTTTATATAA-----TAGGTCGTGCAAGAATAACATG-AAAATA-TGCACAGA---TAGA--TACAACAAACATACG
gi|7 : A--TACAACA---AGTTACACTTTATATAAT----AGGT---CGTGCAAGAATAACATGAAAATATGCACAGATAGATACAACAAACAT--------------A-CGCGCAACACACAT----ACATAAACACA------CACGCACGCAAACACATTTATTATATCACTGTTTTCGTCTTTTCAGTGTTATATAAATA-AA-TACATAATAAAATAAAATCCTGATTTCATAAATATCGTATTATTTGTACAGAGAAGGTGACATATTTCATTCGCAATTTATTATTGCTGACGAAAATATCACAAACATATAAACTGTTTGTATAGTTACATGTAATTGAATTGAGATGCATTTGTGATT----AATG--TTCCA--TTAATA-TTTTTA-ATTTcgcaacacacatacataaacacacacgcacgcaaacacatttattatatcactgttttcgtcttttcagtgttatataaataaatacataataaaataaaatcctgatttcataaatatcgtattatttgtacagagaaggtgacatatttcattcgcaatttattattgctgacgaaaatatcacaaacatataaactgtttgtatagttacatgtaattgaattgagatgcatttgtgattaatgttccattaatatttttaattt
gi|8 : atcgtttattaagatattccaataagtcatatgacctgtgaggGTTTATTAAGAAATTCCAAAAGCTC---ATA-GATTT----------ATTCAATATTTTATTCAGCATTAGATATTTAATACAAACGTTTAAAGCCTAAAATAAT--CATG--AAATGCTGTAAGACCTGTAAAGATACAATAT---GATATAATTTATATAAC----AAAT---GGTGCAATAATTACATAAAAACGTGTACAGTTA-ATG----GAACGC--------------A-CGCACG-TACATACACACACATACACGTGCGTGAACACGTACGTAAACACAGTTGTCATATAATTGTTTTCGCCATTCCAATGTCATATAATCAGAG-CAA-----------------TG-TTTCATAATTATCGTATTATTTGTGCGGAGAAGGTATCATAT
gi|9 : taATCGTTTATTAAGAAATTCCAGACGGCC---ATAAAACATGTGA----CGATA-AA-----AATG------T-TACTATTTATATAA-----CAAATGGTGCAATAATT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TTGCCAAGAAGCAGAAGCTACTTCGTATATGACAGTCATTATATCTCCATCCAGACACAAATGGATTTAAAAATT
Unaligned ( gi|16 ): ATAAGACAGAACAGGAAATGACTTTTATTCAATATAGCATGAACATGATGAGATCATCGTTATCCATATAAAG
Unaligned ( gi|17 ): AACAGAATTTAATTCAATATATTTTGAACATAATAATTATATAGTTTTCGCCCGTTTATTTACACAAACA
Alignments
lowQualScore : 111 11111 666666666666666666666666666666 111111 555555555555555555555555555555 111 1111
lowQualScore : 555 2 6666 9999 4444 0 3 88888 11 3 666 44 1 4 0 0 0 000 1 33333 5 1 1 0 00 0 1 000000000000000000000000000000 5 1 666666 1 222222222222222222222222222222 5 1 1 111 4444 6 6
lowQualScore : ... . .... .... .... . . ..... .. . ... .. . . . . . ... . ..... . . . . .. . . .............................. . . ...... . .............................. . . . ... .... . .
lowQualScore : 444 5 5555 5555 5555 3 1 33333 55 6 444 66 2 0 9 9 9 000 0 33333 7 0 0 1 33 1 0 444444444444444444444444444444 7 7 444444 4 333333333333333333333333333333 7 7 0 777 2222 7 7
consensus : TATCGTTTATTCAGAAATTCCAATAGGCC---ATAAGACCCGTGA----GGATACAACATACAATGCA-TATT-TACAATTGATACAA-----CAAATGGTGCAGTAATTGCATGTGAAATG-TGTACAAC---TAAA--TACAACGCACAGACGTAC-TTTATATA---ACAGAC---GGTGC-AANAATNACATGAAAACGTGCACAGNTA-ATG----GAACGC--------------G-CGCGCG-CACATATTTGCACATGAACAGG------CACGCACGTAAACACACTTATTATGTTCTTGTTTTCTTCATTTCAGTGTCATATAATCA-AA-CAC-----------------TG-TTTCGTAATTTTCGTCTTATTTGTGCGGAGAAGGTGACATATTTCAATCATAATTTAGTATTGCTGATGANAATATTCCAAACATATAAACTGTTAATACA---ATAT----TTGAATTTAGATGCAATTGT-ATTCAAAAATGTTTTCTATGTTATTG-TTTTTATATTTCATATAAGTTATGTAAACTTGTAACATAGCAGTGTAAGTTGGGTTAACTGAATATTTCATTTTTCTTTAT
Reference ( family-673 ) : TATCGTTTATTCAGAAATTCCAATAGGCC---ATAAGACCCGTGA----GGATACAACATACAATGCA-TATT-TACAATTGATACAA-----CAAATGGTGCAGTAATTGCATGTGAAATG-TGTACAAC---TAAA--TACAACGCACAGACGTAC-TTTATATA---ACANAC---GGTGC-AANAATNACATGAAAACGTGCACAGNTA-ATG----GAACGC--------------G-CGCGCG-CACATATTTGCACATGAACAGG------CACGCACGTAAACACACTTATTATGTTCTTGTTTTCTTCATTTCAGTGTCATATAATCA-AA-CAC-----------------TG-TTTCGTAATTTTCGTCTTATTTGTGCGGAGAAGGTGACATATTTCAATCATAATTTAGTATTGCTGATGANAATATTCCAAACATATAAACTGTTAATACA---ATAT----TTGAATTTAGATGCAATTGT-ATTCAAAAATGTTTTCTATGTTATTG-TTTTTATATTTCATATAAGTTATGTAAACTTGTAACATAGCAGTGTAAGTTGGGTTAACTGAATATTTCATTTTTCTTTAT
gi|1 : CGTTTATTCAGAAATTCCAATAGGCC---ATAAGACCCATGA----GGATACAACATACAATGCA-TATT-TACAATTGATACAA-----CAAATGGTGCAGTAATTGCATGTGAAATG-TGTTCAAC---TAAA--TACAACGCACAGACGTAC-TNNNNNNN---NNNNNN---NNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNN----NNNNNNNNNNNNNNNNNNNNG-CGCGCG-CACATATTTGCACATGAACAGG------CACGCACATAAACACACTTATTATGTTCTTGTTTTCTTCATTTCAGTGTCATA--------A-CAC-----------------TG-TTTCGTAATTTTCGTCTTATTTGTGCGGAGAAGGTGACATATTTCAATCATAATTTAGTATTGCTGATGACAATATTCCAAACATATAAACTGTTAATACA---ATAT----TTTAATTTAGATGCAATTGT-ATTCAAAAATGTTTTCTATGTTATTG-TTTTTATATTTCATATAAGTTATGTAAACTTGTAACATAGCAGTGTAAGTTGGATTAACTGAATATTTCATTTTTCTTTAT
gi|10 : TATCATTTATTCCGAAATACCAATAGGCC---ATAAGACCCATGA----GGATACAACATAGTATCCA-TATT-TACAGTTGATACAA-----CAAATGATGCAGTAATTACAGGTTAAATG-TGTACAAC---TAAA--TACAACGCACAGACGTAC-T
gi|11 : ataCGTTTAGTCATAAATTCTAATAGGCCATGATAATACTTGTGA----GGGTA-AGC-----------------ACAGCTGATACAA-----CAGATGTTGCATTTATTATATGTAAATTG-TTAACATG---TAAG--TACAACGTACAATCGCAC-Taatacactcacacacattcatgcatatttcatgatatgggcccaatagaata
gi|12 : gaTATCGTTTATTCAGAAATTCCAATAGGCC---ATAAGACCCATGA----GGATACAACATACAATACA-TATT-TACAATTGATACAA-----CAAATGGTGCAGTAATTGCATGTGAAATG-TGTACAAC---TAAA--TACAACGCACAGACGaacacgcacacgcacacgcacacacgcgtg
gi|13 : ataaTCGATTATTAAGAATTTCTAATAGGCC---ATAAGACGCGCGAGCCTGGATTCAA--------GAA-GA---TACAATTTATATAA-----CAAATGGT
gi|14 : ttttagatagtgccggGTTTTTACATAAATTGAAATAGGCC---ATAACACCTGTGA----GGATACAGCATGTGATATT-TATT-AACAATCTACACAtaa
gi|2 : tTATCGTTTATTCAGAAATTCCAATAGGCC---ATAAGACCCATGA----GGATACAACATACAATGCA-TATT-TACAACTGATACAA-----CAAATGGTGCAGTAATTGCATGTGAAATG-TGTACAAC---TAAA--TACAACGCACAGACGTAC-TNNNNNNN---NNNNNN---NNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNN----NNNNNN--------------G-CGCGCG-CACATATTTGCACATGAACAGG------CACGCACATAAACACACTTATTATGTTCTTGTTTTCTTCATTTCAGTGTCATA--------A-CAC-----------------TG-TTTCGTAATTTTCGTCTTATTTGTGCGGAGAAGGTGACATATTTCAATCATAATTTAGTATTGCTAATGACAATATTCCAAACATATAAACTGTTAATACA---ATAT----TTGAATTTAGATGCAATTGT-ATTCAAAAATGTTTTCTATGTTATTG-TTTTTATATTTCATATAAGTTATGTAAACTTGTAACATAGCAGTGTAAGTTGGGTTAACTGAATATTTCATTTTTCTTTAT
gi|3 : TATCGTTTATTCAGAAATTCCAATAGGCC---ATAAGACCCATGA----GGATACAACATACAATGCA-TATT-TACAATTGATACAA-----CAAATGGTGCAGTAGTTGCATGTGAAATG-TGTAAAAC---TAAT--TACAACGC----------------------ACAGAC---G-TACTNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNN----G--CGC--------------G-CGCGCG-CACATATTTGCACATGAACAGG------CACGCACATAAACACAATTATCATGTTCTTGTTTTCTTCATTTCAGTGTCATATAATCATAA-CAC-----------------TG-TTTCGTAATTTTCGTCATATTTGTGCGGAGAAGGTGACATATTTCAATCATAATTTAGTATTGCTGATGAAAATATTCCAAACATATAAACTGTTAATACA---ATAT----TTGAATTTAGATGCAATTGT-ATTCAAAAATGTTTTCTATGATATTGTTTTTTATATTTCATATAGGTTATGTAAACTTGTAACATAGCATTGTAAGTTGGGTTAACTGAATATTTTATTTTTCTTTAT
gi|4 : TATCGTTTATTCAGAAATTCCAAAAGGCC---ATAAGACCCATGA----TGATACAACATACAATGCA-TATT-TACAATTGATACAA-----CAAATGGTGCAGTAATTGCATGTGAAATG-TGTACAAC---TAAA--TACAACGCACAGACGTAC-TNNNNNNN---NNNNNN---NNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNN----NNNNNNNNNNNN--------G-CGCGCG-CACATATTTGCACATGAACAGG------CACGCACATAAACACACTTATTATGTTCTTGTTTTCTTCATTTCAGTGTCATA--------A-CAC-----------------TG-TTTCGTAATTTTCGTCTTATTTGTGCTGAGAAGGTGACATATTTCAATCATAATTTAGTATTGCTGATGACAATATTCCAAACATATAAACTGTTAATACA---ATAT----TTGAATTTAGATGCAATTGT-ATTCAAAAATGTTTTCTATGTTATTG-TTTTTATATTTCATATAAGTTATGTAAACTTGTAACATAGCAGTGTAAGT
gi|5 : taaTATCATTTATTCCGAAATACCAATAGGCC---ATAAGACCCATGA----GGATACAACATAGTATCCA-TATT-TACAGTTGATACAA-----CAAATGATGCAGTAATTACAGGTTAAATG-TGTACAAC---TAAA--TACAACGCACAGACGTAC-T
gi|6 : gaccacaaattgttacccgatcgagtgcacacactagtgtgtttattgtagttatattggtgtttatgcatctgtttcttttatgtttaacactgctatatatattcgggtgagtgggacgacaagagaccgaaacccccgtggccgtggcattccttgctatcccaacgccatcatactgggaaaatatcctgggttaacctttcattaagctccactttcgatgaggcgctaacaatcaacacttgactgttcaaggcaggcctcaacacatggtgttgatatgataAATA-CGTACAAC---CAAA--TACAACGCACACGCTCACGCTCACACACTCACATACTNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNN----NNNNNN--------------GACGCGCG-CACATATTTGCACATGTATAGG------CACTCACATAAACACACTTATTATGTTCTTGTTTTCTTCATTTCAGTGTCACATAATCA-AAACAC-----------------TA-TTTCGTAACTTTCGTCTTATTTGTGCAGAGAAGGTGACATATTTCAATC-CAATTTAGTATTGCTGATGAAAATATTCCAGGCATGTAAACTGTTAATATA---ATAA----TTGAATTTAGATGCATTTGT-ATTCAAAAAGGTGTTCTTTATTATTG-TTTTTATATTTCATATAAGTTATGTAAACTTGTAACATAGCATTGTAAGTTGGGTTAACTGAATATTTCATTTTTCTTTATaatacactcacacacattcatgcatatttcatgatataggcccaatagaataa
gi|7 : ATCGTTTATTAAGATATTCCAATAAGTC---ATATGACCTGTGA----GGATACAACA-----------AGT-TACACTTTATATAA-----TAGGTCGTGCAAGAATAACATG-AAAATA-TGCACAGA---TAGA--TACAACAAACATACG
gi|7 : A--TACAACA---AGTTACAC-TTTATATA---ATAGGT---CGTGC-AAGAATAACATGAAAATATGCACAGATAGATACAACAAACAT--------------A-CGCGCAACACACAT----ACATAAACACA------CACGCACGCAAACACATTTATTATATCACTGTTTTCGTCTTTTCAGTGTTATATAAATA-AA-TACATAATAAAATAAAATCCTGATTTCATAAATATCGTATTATTTGTACAGAGAAGGTGACATATTTCATTCGCAATTTATTATTGCTGACGAAAATATCACAAACATATAAACTGTTTGTATAGTTACATGTAATTGAATTGAGATGCATTTGTGATT----AATG--TTCCA--TTAATA-TTTTTA-ATTTcgcaacacacatacataaacacacacgcacgcaaacacatttattatatcactgttttcgtcttttcagtgttatataaataaatacataataaaataaaatcctgatttcataaatatcgtattatttgtacagagaaggtgacatatttcattcgcaatttattattgctgacgaaaatatcacaaacatataaactgtttgtatagttacatgtaattgaattgagatgcatttgtgattaatgttccattaatatttttaattt
gi|8 : atcgtttattaagatattccaataagtcatatgacctgtgaggGTTTATTAAGAAATTCCAAAAGCTC---ATA-GATTT----------ATTCAATATTTTATTCAGCATTAGATATTTAATACAAACGTTTAAAGCCTAAAATAAT--CATG--AAATGCTGTAAGACCTGTAAAGATACAATAT---GATATAA-TTTATATA---ACAAAT---GGTGC-AATAATTACATAAAAACGTGTACAGTTA-ATG----GAACGC--------------A-CGCACG-TACATACACACACATACACGTGCGTGAACACGTACGTAAACACAGTTGTCATATAATTGTTTTCGCCATTCCAATGTCATATAATCAGAG-CAA-----------------TG-TTTCATAATTATCGTATTATTTGTGCGGAGAAGGTATCATAT
gi|9 : taATCGTTTATTAAGAAATTCCAGACGGCC---ATAAAACATGTGA----CGATA-AA-----AATG------T-TACTATTTATATAA-----CAAATGGTGCAATAATT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TTGCCAAGAAGCAGAAGCTACTTCGTATATGACAGTCATTATATCTCCATCCAGACACAAATGGATTTAAAAATT
Unaligned ( gi|16 ): ATAAGACAGAACAGGAAATGACTTTTATTCAATATAGCATGAACATGATGAGATCATCGTTATCCATATAAAG
Unaligned ( gi|17 ): AACAGAATTTAATTCAATATATTTTGAACATAATAATTATATAGTTTTCGCCCGTTTATTTACACAAACA
Alignments
lowQualScore : 11111111111111 666666666666666666666666666666 111111 555555555555555555555555555555 111 1111
lowQualScore : 555 2 6666 9999 4444 0 3 88888 11 3 666 44 4 0 0 0 55555555555555 5 1 1 0 00 0 1 000000000000000000000000000000 5 1 666666 1 222222222222222222222222222222 5 1 1 111 4444 6 6
lowQualScore : ... . .... .... .... . . ..... .. . ... .. . . . . .............. . . . . .. . . .............................. . . ...... . .............................. . . . ... .... . .
lowQualScore : 444 5 5555 5555 5555 3 1 33333 55 6 444 66 0 9 9 9 11111111111111 7 0 0 1 33 1 0 444444444444444444444444444444 7 7 444444 4 333333333333333333333333333333 7 7 0 777 2222 7 7
consensus : TATCGTTTATTCAGAAATTCCAATAGGCC---ATAAGACCCGTGA----GGATACAACATACAATGCA-TATT-TACAATTGATACAA-----CAAATGGTGCAGTAATTGCATGTGAAATG-TGTACAAC---TAAA--TACAACGCACAGACGTAC-TTTATATA---ACAGAC---GGTGC-AANAATNACATGAAAACGTGCACAGNTA-ATG----GAACGC--------------G-CGCGCG-CACATATTTGCACATGAACAGG------CACGCACGTAAACACACTTATTATGTTCTTGTTTTCTTCATTTCAGTGTCATATAATCA-AA-CAC-----------------TG-TTTCGTAATTTTCGTCTTATTTGTGCGGAGAAGGTGACATATTTCAATCATAATTTAGTATTGCTGATGANAATATTCCAAACATATAAACTGTTAATACA---ATAT----TTGAATTTAGATGCAATTGT-ATTCAAAAATGTTTTCTATGTTATTG-TTTTTATATTTCATATAAGTTATGTAAACTTGTAACATAGCAGTGTAAGTTGGGTTAACTGAATATTTCATTTTTCTTTAT
Reference ( family-673 ) : TATCGTTTATTCAGAAATTCCAATAGGCC---ATAAGACCCGTGA----GGATACAACATACAATGCA-TATT-TACAATTGATACAA-----CAAATGGTGCAGTAATTGCATGTGAAATG-TGTACAAC---TAAA--TACAACGCACAGACGTAC-TTTATATA---ACAGAC---GGTGC-AANAATNACATGAAAACGTGCACAGNTA-ATG----GAACGC--------------G-CGCGCG-CACATATTTGCACATGAACAGG------CACGCACGTAAACACACTTATTATGTTCTTGTTTTCTTCATTTCAGTGTCATATAATCA-AA-CAC-----------------TG-TTTCGTAATTTTCGTCTTATTTGTGCGGAGAAGGTGACATATTTCAATCATAATTTAGTATTGCTGATGANAATATTCCAAACATATAAACTGTTAATACA---ATAT----TTGAATTTAGATGCAATTGT-ATTCAAAAATGTTTTCTATGTTATTG-TTTTTATATTTCATATAAGTTATGTAAACTTGTAACATAGCAGTGTAAGTTGGGTTAACTGAATATTTCATTTTTCTTTAT
gi|1 : CGTTTATTCAGAAATTCCAATAGGCC---ATAAGACCCATGA----GGATACAACATACAATGCA-TATT-TACAATTGATACAA-----CAAATGGTGCAGTAATTGCATGTGAAATG-TGTTCAAC---TAAA--TACAACGCACAGACGTAC-TNNNNNNN---NNNNNN---NNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNN----NNNNNNNNNNNNNNNNNNNNG-CGCGCG-CACATATTTGCACATGAACAGG------CACGCACATAAACACACTTATTATGTTCTTGTTTTCTTCATTTCAGTGTCATA--------A-CAC-----------------TG-TTTCGTAATTTTCGTCTTATTTGTGCGGAGAAGGTGACATATTTCAATCATAATTTAGTATTGCTGATGACAATATTCCAAACATATAAACTGTTAATACA---ATAT----TTTAATTTAGATGCAATTGT-ATTCAAAAATGTTTTCTATGTTATTG-TTTTTATATTTCATATAAGTTATGTAAACTTGTAACATAGCAGTGTAAGTTGGATTAACTGAATATTTCATTTTTCTTTAT
gi|10 : TATCATTTATTCCGAAATACCAATAGGCC---ATAAGACCCATGA----GGATACAACATAGTATCCA-TATT-TACAGTTGATACAA-----CAAATGATGCAGTAATTACAGGTTAAATG-TGTACAAC---TAAA--TACAACGCACAGACGTAC-T
gi|11 : ataCGTTTAGTCATAAATTCTAATAGGCCATGATAATACTTGTGA----GGGTA-AGC-----------------ACAGCTGATACAA-----CAGATGTTGCATTTATTATATGTAAATTG-TTAACATG---TAAG--TACAACGTACAATCGCAC-Taatacactcacacacattcatgcatatttcatgatatgggcccaatagaata
gi|12 : gaTATCGTTTATTCAGAAATTCCAATAGGCC---ATAAGACCCATGA----GGATACAACATACAATACA-TATT-TACAATTGATACAA-----CAAATGGTGCAGTAATTGCATGTGAAATG-TGTACAAC---TAAA--TACAACGCACAGACGaacacgcacacgcacacgcacacacgcgtg
gi|13 : ataaTCGATTATTAAGAATTTCTAATAGGCC---ATAAGACGCGCGAGCCTGGATTCAA--------GAA-GA---TACAATTTATATAA-----CAAATGGT
gi|14 : ttttagatagtgccggGTTTTTACATAAATTGAAATAGGCC---ATAACACCTGTGA----GGATACAGCATGTGATATT-TATT-AACAATCTACACAtaa
gi|2 : tTATCGTTTATTCAGAAATTCCAATAGGCC---ATAAGACCCATGA----GGATACAACATACAATGCA-TATT-TACAACTGATACAA-----CAAATGGTGCAGTAATTGCATGTGAAATG-TGTACAAC---TAAA--TACAACGCACAGACGTAC-TNNNNNNN---NNNNNN---NNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNN----NNNNNN--------------G-CGCGCG-CACATATTTGCACATGAACAGG------CACGCACATAAACACACTTATTATGTTCTTGTTTTCTTCATTTCAGTGTCATA--------A-CAC-----------------TG-TTTCGTAATTTTCGTCTTATTTGTGCGGAGAAGGTGACATATTTCAATCATAATTTAGTATTGCTAATGACAATATTCCAAACATATAAACTGTTAATACA---ATAT----TTGAATTTAGATGCAATTGT-ATTCAAAAATGTTTTCTATGTTATTG-TTTTTATATTTCATATAAGTTATGTAAACTTGTAACATAGCAGTGTAAGTTGGGTTAACTGAATATTTCATTTTTCTTTAT
gi|3 : TATCGTTTATTCAGAAATTCCAATAGGCC---ATAAGACCCATGA----GGATACAACATACAATGCA-TATT-TACAATTGATACAA-----CAAATGGTGCAGTAGTTGCATGTGAAATG-TGTAAAAC---TAAT--TACAACGCAC----------------------AGAC---G-TACTNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNN----G--CGC--------------G-CGCGCG-CACATATTTGCACATGAACAGG------CACGCACATAAACACAATTATCATGTTCTTGTTTTCTTCATTTCAGTGTCATATAATCATAA-CAC-----------------TG-TTTCGTAATTTTCGTCATATTTGTGCGGAGAAGGTGACATATTTCAATCATAATTTAGTATTGCTGATGAAAATATTCCAAACATATAAACTGTTAATACA---ATAT----TTGAATTTAGATGCAATTGT-ATTCAAAAATGTTTTCTATGATATTGTTTTTTATATTTCATATAGGTTATGTAAACTTGTAACATAGCATTGTAAGTTGGGTTAACTGAATATTTTATTTTTCTTTAT
gi|4 : TATCGTTTATTCAGAAATTCCAAAAGGCC---ATAAGACCCATGA----TGATACAACATACAATGCA-TATT-TACAATTGATACAA-----CAAATGGTGCAGTAATTGCATGTGAAATG-TGTACAAC---TAAA--TACAACGCACAGACGTAC-TNNNNNNN---NNNNNN---NNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNN----NNNNNNNNNNNN--------G-CGCGCG-CACATATTTGCACATGAACAGG------CACGCACATAAACACACTTATTATGTTCTTGTTTTCTTCATTTCAGTGTCATA--------A-CAC-----------------TG-TTTCGTAATTTTCGTCTTATTTGTGCTGAGAAGGTGACATATTTCAATCATAATTTAGTATTGCTGATGACAATATTCCAAACATATAAACTGTTAATACA---ATAT----TTGAATTTAGATGCAATTGT-ATTCAAAAATGTTTTCTATGTTATTG-TTTTTATATTTCATATAAGTTATGTAAACTTGTAACATAGCAGTGTAAGT
gi|5 : taaTATCATTTATTCCGAAATACCAATAGGCC---ATAAGACCCATGA----GGATACAACATAGTATCCA-TATT-TACAGTTGATACAA-----CAAATGATGCAGTAATTACAGGTTAAATG-TGTACAAC---TAAA--TACAACGCACAGACGTAC-T
gi|6 : gaccacaaattgttacccgatcgagtgcacacactagtgtgtttattgtagttatattggtgtttatgcatctgtttcttttatgtttaacactgctatatatattcgggtgagtgggacgacaagagaccgaaacccccgtggccgtggcattccttgctatcccaacgccatcatactgggaaaatatcctgggttaacctttcattaagctccactttcgatgaggcgctaacaatcaacacttgactgttcaaggcaggcctcaacacatggtgttgatatgataAATA-CGTACAAC---CAAA--TACAACGCACACGCTCACGCTCACACACTCACATACTNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNN----NNNNNN--------------GACGCGCG-CACATATTTGCACATGTATAGG------CACTCACATAAACACACTTATTATGTTCTTGTTTTCTTCATTTCAGTGTCACATAATCA-AAACAC-----------------TA-TTTCGTAACTTTCGTCTTATTTGTGCAGAGAAGGTGACATATTTCAATC-CAATTTAGTATTGCTGATGAAAATATTCCAGGCATGTAAACTGTTAATATA---ATAA----TTGAATTTAGATGCATTTGT-ATTCAAAAAGGTGTTCTTTATTATTG-TTTTTATATTTCATATAAGTTATGTAAACTTGTAACATAGCATTGTAAGTTGGGTTAACTGAATATTTCATTTTTCTTTATaatacactcacacacattcatgcatatttcatgatataggcccaatagaataa
gi|7 : ATCGTTTATTAAGATATTCCAATAAGTC---ATATGACCTGTGA----GGATACAACA-----------AGT-TACACTTTATATAA-----TAGGTCGTGCAAGAATAACATG-AAAATA-TGCACAGA---TAGA--TACAACAAACATACG
gi|7 : A--TACAACA---AGTTACAC-TTTATATA---ATAGGT---CGTGC-AAGAATAACATGAAAATATGCACAGATAGATACAACAAACAT--------------A-CGCGCAACACACAT----ACATAAACACA------CACGCACGCAAACACATTTATTATATCACTGTTTTCGTCTTTTCAGTGTTATATAAATA-AA-TACATAATAAAATAAAATCCTGATTTCATAAATATCGTATTATTTGTACAGAGAAGGTGACATATTTCATTCGCAATTTATTATTGCTGACGAAAATATCACAAACATATAAACTGTTTGTATAGTTACATGTAATTGAATTGAGATGCATTTGTGATT----AATG--TTCCA--TTAATA-TTTTTA-ATTTcgcaacacacatacataaacacacacgcacgcaaacacatttattatatcactgttttcgtcttttcagtgttatataaataaatacataataaaataaaatcctgatttcataaatatcgtattatttgtacagagaaggtgacatatttcattcgcaatttattattgctgacgaaaatatcacaaacatataaactgtttgtatagttacatgtaattgaattgagatgcatttgtgattaatgttccattaatatttttaattt
gi|8 : atcgtttattaagatattccaataagtcatatgacctgtgaggGTTTATTAAGAAATTCCAAAAGCTC---ATA-GATTT----------ATTCAATATTTTATTCAGCATTAGATATTTAATACAAACGTTTAAAGCCTAAAATAAT--CATG--AAATGCTGTAAGACCTGTAAAGATACAATAT---GATATAA-TTTATATA---ACAAAT---GGTGC-AATAATTACATAAAAACGTGTACAGTTA-ATG----GAACGC--------------A-CGCACG-TACATACACACACATACACGTGCGTGAACACGTACGTAAACACAGTTGTCATATAATTGTTTTCGCCATTCCAATGTCATATAATCAGAG-CAA-----------------TG-TTTCATAATTATCGTATTATTTGTGCGGAGAAGGTATCATAT
gi|9 : taATCGTTTATTAAGAAATTCCAGACGGCC---ATAAAACATGTGA----CGATA-AA-----AATG------T-TACTATTTATATAA-----CAAATGGTGCAATAATT
blockSeqs : ATG A GCCT TAGT TCAG A ACGTT TT C CTG GA G CTCACATACTNNNN T N N N NNNNNNNNNNNNNNNG A T CGTGAA A TAAATAAATACATAATAAAATAAAATCC A A C GTT GTAA G T
blockSeqs : . G . TACA CCA . . TA . . . . NNNNNNNN . N N N GATACAACAAACATA . T . A TAATCATAACAC . A A . . . .
blockSeqs : . A . TGTG ACA . . TG . . . . NNNNNNNN . N N N NNNNNNNNNGA . T . A TAATCAAAACAC . A C . . . .
blockSeqs : . G . TACA GAA . . TG . . . . ATAGGTCG . N N N NNNNNNNNNG . T . A TAATCAGAGCAA . G A . . . .
blockSeqs : . G . TACA ATT . . TG . . . . ACAAATGG . G A A ATGGAACGCA . A . G ACAC . . A . . . .
blockSeqs : . A . TACA GCA . . TG . . . . AGACG . T T T NNNGCGCG . . . G ACAC .
blockSeqs : . A . TAGT GCA . . TT . . . .
blockSeqs : . A . TTTT GCA . . A . . . .
blockSeqs : . A . A CCA . . . . . . .
blockSeqs : . G . . G . . . . .
blockSeqs : . G . . . . . .
blockSeqs : . . . . . .
blockSeqCons : ATAGAACGCG******************** TAATCAAACAC*******************
originalCons : TATCGTTTATTCAGAAATTCCAATAGGCC---ATAAGACCCGTGA----GGATACAACATACAATGCA-TATT-TACAATTGATACAA-----CAAATGGTGCAGTAATTGCATGTGAAATG-TGTACAAC---TAAA--TACAACGCACAGACGTAC-TTTATATA---ACAGAC---GGTGC-AANAATNACATGAAAACGTGCACAGNTA-ATG----GAACGC--------------G-CGCGCG-CACATATTTGCACATGAACAGG------CACGCACGTAAACACACTTATTATGTTCTTGTTTTCTTCATTTCAGTGTCATATAATCA-AA-CAC-----------------TG-TTTCGTAATTTTCGTCTTATTTGTGCGGAGAAGGTGACATATTTCAATCATAATTTAGTATTGCTGATGANAATATTCCAAACATATAAACTGTTAATACA---ATAT----TTGAATTTAGATGCAATTGT-ATTCAAAAATGTTTTCTATGTTATTG-TTTTTATATTTCATATAAGTTATGTAAACTTGTAACATAGCAGTGTAAGTTGGGTTAACTGAATATTTCATTTTTCTTTAT
finalCons : TATCGTTTATTCAGAAATTCCAATAGGCC---ATAAGACCCGTGA----GGATACAACATACAATGCA-TATT-TACAATTGATACAA-----CAAATGGTGCAGTAATTGCATGTGAAATG-TGTACAAC---TAAA--TACAACGCACAGACGTAC-TTTATATA---ACAGAC---GGTGC-AANAATNACATGAAAACGTGCACAGNTAATAGAACGCG--------------------CGCGCG-CACATATTTGCACATGAACAGG------CACGCACGTAAACACACTTATTATGTTCTTGTTTTCTTCATTTCAGTGTCATATAATCAAACAC-------------------TG-TTTCGTAATTTTCGTCTTATTTGTGCGGAGAAGGTGACATATTTCAATCATAATTTAGTATTGCTGATGANAATATTCCAAACATATAAACTGTTAATACA---ATAT----TTGAATTTAGATGCAATTGT-ATTCAAAAATGTTTTCTATGTTATTG-TTTTTATATTTCATATAAGTTATGTAAACTTGTAACATAGCAGTGTAAGTTGGGTTAACTGAATATTTCATTTTTCTTTAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TTGCCAAGAAGCAGAAGCTACTTCGTATATGACAGTCATTATATCTCCATCCAGACACAAATGGATTTAAAAATT
Unaligned ( gi|16 ): ATAAGACAGAACAGGAAATGACTTTTATTCAATATAGCATGAACATGATGAGATCATCGTTATCCATATAAAG
Unaligned ( gi|17 ): AACAGAATTTAATTCAATATATTTTGAACATAATAATTATATAGTTTTCGCCCGTTTATTTACACAAACA
Alignments
lowQualScore : 11111111111111 666666666666666666666666666666 111111 555555555555555555555555555555 111 1111
lowQualScore : 555 2 6666 9999 4444 0 3 88888 11 3 666 44 4 0 0 0 55555555555555 5 1 1 0 00 0 1 000000000000000000000000000000 5 1 666666 1 222222222222222222222222222222 5 1 1 111 4444 6 6
lowQualScore : ... . .... .... .... . . ..... .. . ... .. . . . . .............. . . . . .. . . .............................. . . ...... . .............................. . . . ... .... . .
lowQualScore : 444 5 5555 5555 5555 3 1 33333 55 6 444 66 0 9 9 9 11111111111111 7 0 0 1 33 1 0 666666666666666666666666666666 7 7 444444 4 333333333333333333333333333333 7 7 0 777 2222 7 7
consensus : TATCGTTTATTCAGAAATTCCAATAGGCC---ATAAGACCCGTGA----GGATACAACATACAATGCA-TATT-TACAATTGATACAA-----CAAATGGTGCAGTAATTGCATGTGAAATG-TGTACAAC---TAAA--TACAACGCACAGACGTAC-TTTATATA---ACAGAC---GGTGC-AANAATNACATGAAAACGTGCACAGNTA-ATG----GAACGC--------------G-CGCGCG-CACATATTTGCACATGAACAGG------CACGCACGTAAACACACTTATTATGTTCTTGTTTTCTTCATTTCAGTGTCATATAATCA-AA-CAC-----------------TG-TTTCGTAATTTTCGTCTTATTTGTGCGGAGAAGGTGACATATTTCAATCATAATTTAGTATTGCTGATGANAATATTCCAAACATATAAACTGTTAATACA---ATAT----TTGAATTTAGATGCAATTGT-ATTCAAAAATGTTTTCTATGTTATTG-TTTTTATATTTCATATAAGTTATGTAAACTTGTAACATAGCAGTGTAAGTTGGGTTAACTGAATATTTCATTTTTCTTTAT
Reference ( family-673 ) : TATCGTTTATTCAGAAATTCCAATAGGCC---ATAAGACCCGTGA----GGATACAACATACAATGCA-TATT-TACAATTGATACAA-----CAAATGGTGCAGTAATTGCATGTGAAATG-TGTACAAC---TAAA--TACAACGCACAGACGTAC-TTTATATA---ACAGAC---GGTGC-AANAATNACATGAAAACGTGCACAGNTA-ATA----GAACGC--------------G-CGCGCG-CACATATTTGCACATGAACAGG------CACGCACGTAAACACACTTATTATGTTCTTGTTTTCTTCATTTCAGTGTCATATAATCA-AA-CAC-----------------TG-TTTCGTAATTTTCGTCTTATTTGTGCGGAGAAGGTGACATATTTCAATCATAATTTAGTATTGCTGATGANAATATTCCAAACATATAAACTGTTAATACA---ATAT----TTGAATTTAGATGCAATTGT-ATTCAAAAATGTTTTCTATGTTATTG-TTTTTATATTTCATATAAGTTATGTAAACTTGTAACATAGCAGTGTAAGTTGGGTTAACTGAATATTTCATTTTTCTTTAT
gi|1 : CGTTTATTCAGAAATTCCAATAGGCC---ATAAGACCCATGA----GGATACAACATACAATGCA-TATT-TACAATTGATACAA-----CAAATGGTGCAGTAATTGCATGTGAAATG-TGTTCAAC---TAAA--TACAACGCACAGACGTAC-TNNNNNNN---NNNNNN---NNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNN----NNNNNNNNNNNNNNNNNNNNG-CGCGCG-CACATATTTGCACATGAACAGG------CACGCACATAAACACACTTATTATGTTCTTGTTTTCTTCATTTCAGTGTCATA--------A-CAC-----------------TG-TTTCGTAATTTTCGTCTTATTTGTGCGGAGAAGGTGACATATTTCAATCATAATTTAGTATTGCTGATGACAATATTCCAAACATATAAACTGTTAATACA---ATAT----TTTAATTTAGATGCAATTGT-ATTCAAAAATGTTTTCTATGTTATTG-TTTTTATATTTCATATAAGTTATGTAAACTTGTAACATAGCAGTGTAAGTTGGATTAACTGAATATTTCATTTTTCTTTAT
gi|10 : TATCATTTATTCCGAAATACCAATAGGCC---ATAAGACCCATGA----GGATACAACATAGTATCCA-TATT-TACAGTTGATACAA-----CAAATGATGCAGTAATTACAGGTTAAATG-TGTACAAC---TAAA--TACAACGCACAGACGTAC-T
gi|11 : ataCGTTTAGTCATAAATTCTAATAGGCCATGATAATACTTGTGA----GGGTA-AGC-----------------ACAGCTGATACAA-----CAGATGTTGCATTTATTATATGTAAATTG-TTAACATG---TAAG--TACAACGTACAATCGCAC-Taatacactcacacacattcatgcatatttcatgatatgggcccaatagaata
gi|12 : gaTATCGTTTATTCAGAAATTCCAATAGGCC---ATAAGACCCATGA----GGATACAACATACAATACA-TATT-TACAATTGATACAA-----CAAATGGTGCAGTAATTGCATGTGAAATG-TGTACAAC---TAAA--TACAACGCACAGACGaacacgcacacgcacacgcacacacgcgtg
gi|13 : ataaTCGATTATTAAGAATTTCTAATAGGCC---ATAAGACGCGCGAGCCTGGATTCAA--------GAA-GA---TACAATTTATATAA-----CAAATGGT
gi|14 : ttttagatagtgccggGTTTTTACATAAATTGAAATAGGCC---ATAACACCTGTGA----GGATACAGCATGTGATATT-TATT-AACAATCTACACAtaa
gi|2 : tTATCGTTTATTCAGAAATTCCAATAGGCC---ATAAGACCCATGA----GGATACAACATACAATGCA-TATT-TACAACTGATACAA-----CAAATGGTGCAGTAATTGCATGTGAAATG-TGTACAAC---TAAA--TACAACGCACAGACGTAC-TNNNNNNN---NNNNNN---NNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNN----NNNNNN--------------G-CGCGCG-CACATATTTGCACATGAACAGG------CACGCACATAAACACACTTATTATGTTCTTGTTTTCTTCATTTCAGTGTCATA--------A-CAC-----------------TG-TTTCGTAATTTTCGTCTTATTTGTGCGGAGAAGGTGACATATTTCAATCATAATTTAGTATTGCTAATGACAATATTCCAAACATATAAACTGTTAATACA---ATAT----TTGAATTTAGATGCAATTGT-ATTCAAAAATGTTTTCTATGTTATTG-TTTTTATATTTCATATAAGTTATGTAAACTTGTAACATAGCAGTGTAAGTTGGGTTAACTGAATATTTCATTTTTCTTTAT
gi|3 : TATCGTTTATTCAGAAATTCCAATAGGCC---ATAAGACCCATGA----GGATACAACATACAATGCA-TATT-TACAATTGATACAA-----CAAATGGTGCAGTAGTTGCATGTGAAATG-TGTAAAAC---TAAT--TACAACGCAC----------------------AGAC---G-TACTNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNN----G--CGC--------------G-CGCGCG-CACATATTTGCACATGAACAGG------CACGCACATAAACACAATTATCATGTTCTTGTTTTCTTCATTTCAGTGTCATATAATCATAA-CAC-----------------TG-TTTCGTAATTTTCGTCATATTTGTGCGGAGAAGGTGACATATTTCAATCATAATTTAGTATTGCTGATGAAAATATTCCAAACATATAAACTGTTAATACA---ATAT----TTGAATTTAGATGCAATTGT-ATTCAAAAATGTTTTCTATGATATTGTTTTTTATATTTCATATAGGTTATGTAAACTTGTAACATAGCATTGTAAGTTGGGTTAACTGAATATTTTATTTTTCTTTAT
gi|4 : TATCGTTTATTCAGAAATTCCAAAAGGCC---ATAAGACCCATGA----TGATACAACATACAATGCA-TATT-TACAATTGATACAA-----CAAATGGTGCAGTAATTGCATGTGAAATG-TGTACAAC---TAAA--TACAACGCACAGACGTAC-TNNNNNNN---NNNNNN---NNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNN----NNNNNNNNNNNN--------G-CGCGCG-CACATATTTGCACATGAACAGG------CACGCACATAAACACACTTATTATGTTCTTGTTTTCTTCATTTCAGTGTCATA--------A-CAC-----------------TG-TTTCGTAATTTTCGTCTTATTTGTGCTGAGAAGGTGACATATTTCAATCATAATTTAGTATTGCTGATGACAATATTCCAAACATATAAACTGTTAATACA---ATAT----TTGAATTTAGATGCAATTGT-ATTCAAAAATGTTTTCTATGTTATTG-TTTTTATATTTCATATAAGTTATGTAAACTTGTAACATAGCAGTGTAAGT
gi|5 : taaTATCATTTATTCCGAAATACCAATAGGCC---ATAAGACCCATGA----GGATACAACATAGTATCCA-TATT-TACAGTTGATACAA-----CAAATGATGCAGTAATTACAGGTTAAATG-TGTACAAC---TAAA--TACAACGCACAGACGTAC-T
gi|6 : gaccacaaattgttacccgatcgagtgcacacactagtgtgtttattgtagttatattggtgtttatgcatctgtttcttttatgtttaacactgctatatatattcgggtgagtgggacgacaagagaccgaaacccccgtggccgtggcattccttgctatcccaacgccatcatactgggaaaatatcctgggttaacctttcattaagctccactttcgatgaggcgctaacaatcaacacttgactgttcaaggcaggcctcaacacatggtgttgatatgataAATA-CGTACAAC---CAAA--TACAACGCACACGCTCACGCTCACACACTCACATACTNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNN----NNNNNN--------------GACGCGCG-CACATATTTGCACATGTATAGG------CACTCACATAAACACACTTATTATGTTCTTGTTTTCTTCATTTCAGTGTCACATAATCA-AAACAC-----------------TA-TTTCGTAACTTTCGTCTTATTTGTGCAGAGAAGGTGACATATTTCAATC-CAATTTAGTATTGCTGATGAAAATATTCCAGGCATGTAAACTGTTAATATA---ATAA----TTGAATTTAGATGCATTTGT-ATTCAAAAAGGTGTTCTTTATTATTG-TTTTTATATTTCATATAAGTTATGTAAACTTGTAACATAGCATTGTAAGTTGGGTTAACTGAATATTTCATTTTTCTTTATaatacactcacacacattcatgcatatttcatgatataggcccaatagaataa
gi|7 : ATCGTTTATTAAGATATTCCAATAAGTC---ATATGACCTGTGA----GGATACAACA-----------AGT-TACACTTTATATAA-----TAGGTCGTGCAAGAATAACATG-AAAATA-TGCACAGA---TAGA--TACAACAAACATACG
gi|7 : A--TACAACA---AGTTACAC-TTTATATA---ATAGGT---CGTGC-AAGAATAACATGAAAATATGCACAGATAGATACAACAAACAT--------------A-CGCGCAACACACAT----ACATAAACACA------CACGCACGCAAACACATTTATTATATCACTGTTTTCGTCTTTTCAGTGTTATATAAATA-AA-TACATAATAAAATAAAATCCTGATTTCATAAATATCGTATTATTTGTACAGAGAAGGTGACATATTTCATTCGCAATTTATTATTGCTGACGAAAATATCACAAACATATAAACTGTTTGTATAGTTACATGTAATTGAATTGAGATGCATTTGTGATT----AATG--TTCCA--TTAATA-TTTTTA-ATTTcgcaacacacatacataaacacacacgcacgcaaacacatttattatatcactgttttcgtcttttcagtgttatataaataaatacataataaaataaaatcctgatttcataaatatcgtattatttgtacagagaaggtgacatatttcattcgcaatttattattgctgacgaaaatatcacaaacatataaactgtttgtatagttacatgtaattgaattgagatgcatttgtgattaatgttccattaatatttttaattt
gi|8 : atcgtttattaagatattccaataagtcatatgacctgtgaggGTTTATTAAGAAATTCCAAAAGCTC---ATA-GATTT----------ATTCAATATTTTATTCAGCATTAGATATTTAATACAAACGTTTAAAGCCTAAAATAAT--CATG--AAATGCTGTAAGACCTGTAAAGATACAATAT---GATATAA-TTTATATA---ACAAAT---GGTGC-AATAATTACATAAAAACGTGTACAGTTA-ATG----GAACGC--------------A-CGCACG-TACATACACACACATACACGTGCGTGAACACGTACGTAAACACAGTTGTCATATAATTGTTTTCGCCATTCCAATGTCATATAATCAGAG-CAA-----------------TG-TTTCATAATTATCGTATTATTTGTGCGGAGAAGGTATCATAT
gi|9 : taATCGTTTATTAAGAAATTCCAGACGGCC---ATAAAACATGTGA----CGATA-AA-----AATG------T-TACTATTTATATAA-----CAAATGGTGCAATAATT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TTGCCAAGAAGCAGAAGCTACTTCGTATATGACAGTCATTATATCTCCATCCAGACACAAATGGATTTAAAAATT
Unaligned ( gi|16 ): ATAAGACAGAACAGGAAATGACTTTTATTCAATATAGCATGAACATGATGAGATCATCGTTATCCATATAAAG
Unaligned ( gi|17 ): AACAGAATTTAATTCAATATATTTTGAACATAATAATTATATAGTTTTCGCCCGTTTATTTACACAAACA