lowQualScore : 11111
lowQualScore : 1111111 111111111 222 111111111 1111 3333 222 111 3333 1 444444444444444444444444444444 1 1111 3333333333333 222222222222 11 2 1 11 1111 1111 1111 1 1 2222222222222 11111 222222222222 111 11111 11 22222 11 00000 1 1 11 22 888888888888888888888888888888888 33
lowQualScore : 666 0 3 88 0000000 77777 8 3 55 6666 7 999999999 3 0 111 1 555 777777777 7777 3 4444 3 6666 3 444 1 66 4 666 0 0000 55 3 777 1 5 444 888888888888888888888888888888 66 66 2 0000 5 5 77 1111111111111 4 4 666666666666 66 3 6 0 1 0 7 333 66 6 0000 6 2222 5 5 1111 5 5 5 5 1 5 66 7777777777777 22222 5 2 5 999999999999 3 6 000 6 0 0 1 0 6 6 99 1 1 33333 6 0 1 44 8 5 00000 22 0 2 6 00000 5 3 4 6 2 88 1 4 6 88 4 77 2 111111111111111111111111111111111 00
lowQualScore : ... . . .. ....... ..... . . .. .... . ......... . . ... . ... ......... .... . .... . .... . ... . .. . ... . .... .. . ... . . ... .............................. .. .. . .... . . .. ............. . . ............ .. . . . . . . ... .. . .... . .... . . .... . . . . . . .. ............. ..... . . . ............ . . ... . . . . . . . .. . . ..... . . . .. . . ..... .. . . . ..... . . . . . .. . . . .. . .. . ................................. ..
lowQualScore : 444 4 1 55 0000000 77777 2 0 88 5555 9 444444444 1 8 333 5 888 222222222 1111 3 2222 4 4444 0 555 1 11 7 444 7 1111 55 2 000 4 4 888 444444444444444444444444444444 44 11 1 6666 0 0 66 4444444444444 3 6 555555555555 00 8 2 6 6 8 1 111 55 0 7777 3 1111 7 7 7777 7 7 6 0 9 0 99 5555555555555 55555 0 1 7 333333333333 7 0 222 6 7 7 4 7 7 0 22 0 4 00000 6 8 4 66 0 8 00000 22 7 2 0 00000 5 0 0 0 5 00 5 0 0 55 0 55 5 000000000000000000000000000000000 00
consensus : ATATATTCTTTATTTCCTCCATT---AGCGGAGAGCGACATA-T--AT-------GTTA-----TTACATAAAGAACATANTAAACATGAATATGAACA----GCAAA--A-AN--ACAT-ACAAAAGT-A-TATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAGAGCGCTACACC-CTGCACTAACACTC-GCAGATACAC--GCAATTACAGACATACATGAATC--AA--GCGTGATGAG---GTACAAGCAGACACGCATACAGACTGAAAA--GCAN------------------------ACA-CGCGCAT--ATACTCACGCC----TTC-ACAG-ACACATGNAT-------------ATGAACACAAGCGTG-----AAT--ANATACATN-CACAGTTTNAGAGTCAACTCAAAGCTATGTTATAATCGTTAT--CTTGTACAATCTTTTCACCGAGTAAA---CAGGGAAAAA----A-CTGAA-AAG---AGTT-TT-AACCATGTCTGTA-AATATTAAATGAAAGTTACATCAGTATGAGTATA-TA--ACACTTAATATG-------------CAT-----TCACT-GANGA-T------------ATCTCGCTCGTTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACCCATAGCAAAGATGAGTTATTTGGGATTGCATATCGGTAGATATGAATCGTAGAAA-ACACTCGAATCCAAATACTGAATGAATATTATTCCAAAGCA--TTTGTCTGTTAGTTTCATTAACCGCACAGTCAAACACTA--A--ATGGAGAGATAGTTCATTTGTACTAAGTCCGCACTTATGACACGTT-TGCCGGTAAGCATACGAGTAG-----GTAANACTTAATATTTTTATAGTGCTCCTACATTTTTCGAGTAAAAGAGGATATTCCTCGCTAAGAGACCAAATCGGCGAGATAATGCCGAGCGATGAGTGATAAAAACTAAAACGATGGAGATTCTCATCATCGCTCAATCTTAAGCTCAATGATAATTGCTCGGATGTATCTACATAATTTATTGTCTTATGATATATTTCCAAACNTGTTTCGAAGGAAAGNCACNCGATTCGATNNANCGTTCATGAATGTGAACTAAGTTGTNGTGTCTCAATAAGTCANATATGTATNAGGAATAAACCCGCTTTTATTATTTTGGTTCTCAA--TACAACGTATAAGTATTTA
Reference ( gi|2 ) : ATATATTCTTTATTTCCTCCATT---AGCGGAGAGCAACATA-T--AT-------GTTA-----TTACATAAAGAACATATTAAACATGAACATGAGTA----GCAAA--A-AA--ACAT-ACAAAAGT-T-TATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAAAACGCTACACCCCTGTACTAACACTG-GCAGATATAC--GCAATTACAGACATACATGAATC--AA--GCGTGATGAG---GTACAAGCAGACACGCAAACAGACTGAAAA--GGAA------------------------ACA-TGCACAT--ATACTAACGCC----TTC-ACAG-ACACATGAAT-------------ATGAACACAAACATG-----AAT--ACATACATC-CACAGTTTTAGAGTCAACTCAATGCTATGTT-TAATCACTAT--CTTGTATAATCTTTTCACCGAATAAA---CAGGGGAAAA----A-CTGAA-AAG---AGTT-TT-AACAATATCTGTA-AATATTAAATGAAAGTTACATCAGTATGACTATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATCCCGCTCATTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACCCATAGCAAAGATGAGTTATTTGGGATTGCATATCGGTAGATATGAATCGTAGAAA-ACACTCGAATCCAAATGCTGAATGAATATTATTCCAAAGCA--TTTGTCTGTTAGTTTCATTAACCGCACAGTCAAACACTA--A--ATGGAGAGATAGATCATTTGTACTAAGTCCGCACTTATGACACGAT-TGCCGGTAAGCATGAGAGTAG-----GTAAAACTTAATATTTTTATAGTGCTCCTACATTTTTCAAGTAAAAGAGGATATTCCTTGCTAAGGGACCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTCTCATCATCGCTCAATCTTAAGTTCAATGATAATTGCTCGAATGTATCTACA-----TATTGTCTTATGATATATTTCCAAACATGTTTTGAAGGAAAGACGCCCGATTCGATAAAACGTTCATAAATGTGAACTAAGTTGTAATGCCTTAATAAGTTATATA--TATCAGGAATAAATCAGTTCCAGTCATTCAGTTTGTAAAAGTAAGATATATAATGATTTA
gi|4 : ATATATTCTTTATTTCCTCCATT---AGCGGAGAGCGACATA-T--AT-------GTTA-----TTACATAAAGAACATATTAAACATGAAAAAAAAAACAAAGCAAA--A-AA--ACAT-ACAAAAGT-A-TATCAATATTAA---ATAGAATAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAAAACGCTACACCCCTGTACTAACACTC-GCAGATATAC--GCAATTACAGCCATACATGAATC--AA--GCGTGATGAG---GTACAAGCAGACACGCATACAGACTGAAAA--GGAA------------------------ACA-TGCACAT--ATACTAACGCC----TTC-ACAG-ACACATGAAT-------------AT-------------------------ATACATC-CACAGTTTAAGCGCCAACTCAAAGATTTGTT-TAATCACTAT--
gi|1 : TATATTCTTTATTTCCTCCATT---AGCGGAGAGAGACATA-T--AT-------GTTA-----TTACATAAAGAACATAATAAATATGAACATGAATA----GCAAA--A-AA--ACAC-ACAAAAGT-A-TATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAAAACGCTACACCCCTGCACTAACACTC-GCAGCTATAC--GCAACTACAGACATACATGAATC--AA--TCGTGATGAG---GTATAAGCAGACACGCATACAGACTGAAAA--GGAAACATGCATATATACTAACGCCTTCACA-GACACATGAATACGAACACA----ATC-ATGA-ATACATACATCCACAGTTTTAGCATCAACTCAAAAATGTGTTTAATCAATATACAAAACAAAGT----AAATAAACACAG-GC-ATGTTATAATGGTTATTTCTTGTACAATCTTTTCACCGAAAAAAAAACAGGGAAAAA----AACTGAA-AAG---AGTT-TT-AACCATATCTGTA-AATATTAAATGAGAGTTACATCAGTATGAATATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATCTCGCTCGTTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTTTTTAGACATAAGTCTTGCTCGGTTTTCATCTGAAGTGTTTTGTTTAACCTATAGCAAAGATGAGTTATTTGGGATTGAATATCCGTAGATATGAATCATAAAAATACACTCGAATCAAAATACTGAATGAATATTATTCCAATGCA--TTTGTCAGTTAGTTTCATTAACCGCATAGCCAAACACTA--A--ATGGAGAGATAGATCATTTGTACTAAGTCCGCATTTATGACACGTT-TGCAGGTAAGCATGTGAGTAG-----GTAAAACTTAATATTTTTACAGTGCTCCTACATTTTTCAATTAAAAGAGGATATTCCTTGCTAAGGGTCCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTGTCATCATCGCTCAATCTTAAGCTCAATGATAATTGCTCGGATGTATCTACATAATTTATTGTCTTATGATATATTTCCAAACATGTTTTGAAGGAAAGACACACGATTCGATAAAGCGTTCATAAATGTGAACTAAGTTGTAATGTCTTAATAAGTTATATATGTATCAGGAATAAACCacaaaataaagtaaataaacacaggcatattataatggttatttcttgtacaatcttttcaccgaataaaaagggggaaaactgaaaatagttttaaccatatctgtaaatattaaatgaaagctacatcagtatgaatatataacacttaataagcattcactgatgatatctcgctcgttagaagattaattcataagcataatgtgaaatgaatttacgactattttcagacataagtcttgctcagttttcagctgaagtattttgtttagcccatagcaaagatgagttattagggattgcatatcggtagatatgaatcgtagaaaacactcgaatccaaatacttaatgaatattattccaaagaatttgtctgttagtttcattaaccgcacagtcaaacactaaatggagagatagatcatttgtactaagtccacacttatgacacgtttgccggtaagcatgagagtaggtaaaacttaatatttttatattgctcctacatttttcaagtaaaagaggatattcctttctaagagaccaaatcggcgagataatgccaagcgatgagtgataaaaactaaaacgatggagattctcatcatcgctcaatcttaagctcaatgataattgctcggatgtatcaa
gi|7 : TATATTCTTTATTTCTTCAATA---AAATGATACCAACATA-T--AT-------GTAA-----TTACATAAAGAACATAGTAAACATGAATATGAGCA----TC-AA--A-TC--ACAT-ACAAAAAT-A-TATCAATATTAA---AAAGAGTAAAGCATACAGGA----CAATTA----CTT-A----ACATTTGAATTGTAGATCGTTACA---TTGCACTAACAC--------TAAAC--GTAATT-TGG-------TAAAT-------GC------AG-----ACACGCAGAC---TA-----ACTAGCAA--GCAT------------------------ACA-CGCGCAT--ATATTCACGCA----TTC-ACAG-ACACATGGAT-------------ATGAACACAAGCATG-----ATT--AGGAACATA-CATAGTCTAAGAGTATACTTAAAGCTATATT-TATTTAATA-------TACAA-----------AATAAA-------GCAAAATAATA-CAAAAGAAA---AGTT-TT-AACTCTGTCTATT-AAAATTAAATGAACGTTACATCAGTATGAGTATA-TT--ACAATTAATATG-------------CAT-----TCACT-GAAGA-T------------ATCTCGCCCGTTAGAAGATTAATTCATAAGCGTATTGTCAAATGAATTTACAACCActcttttattatacgggttgtcattataacgtataagtctatttaaaagta
gi|11 : aaatTATATTCTTTCTTTCCTCAATT---AACGGAGGGCAACATA-T--TT-------GTTA-----TGACATAAAGAACATATTAAATACGAACATGAGCA----GCAAAT-A-AC--ACAC-ACCAA--T-A-TATCAATATTAA---ATAGAGTAAAAGGGACAGGA----C----A----CTT-T----ACATTTGAATTGCAAAGCGCTACA---TTGCACTAACATTC-GCAGATACAC--G--------------CATGAA-CAAAA--GCGTGATGAG---GTACAAGCAGACACATATACAGACTAGAAA--GCAT------------------------ACA-CGCGCAT--ATACCCGCGCA----TTC-ACAG-ACACATGGAT-------------ATCAACACAAGCAT
gi|17 : TATATTCTTTATTACCT---TTCAAATCGGAGAGCAACATC-A--AT-------GTTA-----TCACAC--AGAAAATAGTAAACATGAATATGA-CA----TC--A--A-AC--ACAT-ACAAAAATATATATCAATGATAT---AAAGAGCAATGCAT
gi|5 : attATATTCATTATTCCCTCCATT---AGTAGAAGGCGACATA-T--AC-------GTTA-----TTACATAAAGAACATATTAAACATGAACATGAGTA----GCAAA--A-AT---CAT-ACAGAAAT-A-TATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACACTTGAATTGCAAATCGCTACACCACTGCACTAACACTC-GCAGATACAC--GCAATTACAGACATACATGAA-C--AAAAGCGTGATGAG---GTATAAGCATACACGCATACAGACTAAAAA--GCAA------------------------ACA-CGCACAT--ATACTCACTCC----TTC-ACAG-ACACATGAAT-------------ATGAACAAAAACATG-----AAT--GCATACATT-CACAACTTTAGAATCAACCCAAAGCTGTGTT-TAATCACCAT--
gi|12 : ACATTCTTTATTTCTTCCGGT---AACTAAGAGTAACATG-T--ATTTTTTATGTTA-----TTATTGAAAGATCACAGTAAACATGAATATGAACA----GCAAA-----------TCACG--------TATCACTATTAA---ATAGAGTAAAACAAACAGGA----C----AATTTCTTAA----ACATTTGAATTGCAGAGCACTACA---TTGCACTAGCA-TGCGCAGATACAG--TTAATTACAGA-------AAACC--AT--CCATG-TAAG---GCACAAGCAAACACGCGCTCATACTCACACCTTCAC------------------------ACA-CGCGCTT--ATACTCACGCC----TTC-ACAC-ACacaaaataaaataaaataaacacaggcatattacaatggttatttcttgtacaatcttttcaccgagtaaacagggcaaaaactaaacatagttttaaccatgtctgtaaatattaaatgaaagttaaatcagtatcactatataacacttaatatgtattcactggtgacatctcgctcgctagaagattaattcataagcatctcgctcgctagaagattaattcataagcatactatggaatgaaattacgactattttcagacataagcattgctcagttttcagctgaagtattttgtttaaccatagcaaagatgagttatttgggattgtatatcggtagatatgaattgtagaaaacactcgaatccaaatactgaatgaatattattccaaatcatttgtctgttgcgtcgtcataccaacaaagactgttagtgtttaaaaata
gi|18 : TATTATTTGTTTC-TGCAGT---ACCAGGGAGCAGCATACT--TT-------CATA-----TTACATAAAGAACATAGT--ACATGAATGTGAACA----GCCGC--A-AATTACAT-GCAAGAg
gi|8 : catgtacTTATTTCATCCATT---AACTGAGAGCAACTTT-TTCAT-------GTTA-----TTACATAAAGAACATAATAAACATGAATATGAACA----AC-TA--A-TC--CCAT-ACAAAGAT-A-TACCATTATTAA---ATAGAATAAAGCATACACGAAAATT----A----CTT-A----ATA-TTGAAATACAGAGCGCTATAagatag
gi|16 : taattgTATGTCCTCTAGT---AGCGCAGTGCAGCATA-T--TT-------GTTA-----TTACATTAAGAATATAATAGATATTAATATAAGCG----GC-AA--A-CC--ACAT-GCATAAGG-A-TATC---GTGAAAACATACACTGAAACGTACAGGA----C----A----ATT-ACTGTACATTTGACTTACAGAtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacatcgagaggctgagaatcaacataaagttttggttaactaatatacaacataaagcgaaataatacaagga
gi|14 : TTTTCTCCATT---AGCGGAGAGCGACATA-T--AT-------GTTA-----TTACATAAAGAACATATTAAACATGAATATGAGTA----GCAAA--ACAA--ATAT-TCAAAAGT-A-TATTAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----GTT-T----ACATTTGAATTGCAAAGTGCTACACCACTGCACTAACACGC-ACAGATACAC--GCAATTACAGACATATATGAA-CAAAA--GCGTGATGAT---GTACAAGCAGTCACCCATACAGACTAAAAT--GCAA------------------------ACACTGTATAC--A
gi|3 : tattATA-TCAAT-------GTTA-----TTACATAAA-----------ACATGAATATGAACA----GCAAA--T-CA---CAT-ACACAAAT-A-AATGATTATCAA---ATAGAGTAAAGCATAAAAGC----CAATTA----CTG-A----ACGTTCGAATTGC-AGACACTACA---ATTTATTAACACGC-GCAAATACAC--GCAAT--CAG--ATACCTGAA-CAAAA--GCGTGATAAT---GTTCAAACATACATACATACAAACTGACAA--c
gi|13 : ATA-T--AT-------ATTACATAATTATATAAAGAGCATTATAAACAAGAATATGAACA----GCAAATCA-GA--A----ACAAAAG--A-TGTCATTATTAA---ATAGAGCAAAG----GAGAAT---T----A----CTT-A----ACATTTGAATTTCAGAACGCTATA---ATGCACGAACAC---GCACAGATACCGGCAAATTCAGTTGTACGT-AATT--AG--GC-TAA-AAA---ATACAGGCAGACATATAAG-AAACT---------AT------------------------ATA-TGTGCAT--TTAGT--CACCATTTTTCTAC----CACATATAC-------------ATGAACATAATCGCG-----AAT--AAGTACAT---ACAGtcaactgaacgttttgtttattcaataggcaaattgaacaaaataataataatacatgtaataataataataaaaaataaatagtgaaaaaaaaacaatcaaaatttagacatcatagtaaactataacgaaacgaaacataaggcactctggtgaaatctgaatgtatatgatatgataaacaaaatacattaaaggagttatttcttattttatcttttctgtaaatattgaatgaatgttacatcagtatgagtatattgccgttattatgtactcattgcagagtattcattgttagtgacttaattcataaacatattgtgaaatcaatttatgactattttcagacataaatcttgatctattttcagctgaagaatttcatataaacaaaaacaaagataagttatttaaaatttcatatcggaagaatccacatattgagtgaatattactctaaagcacatgtctgttcgtttcattaaccacacactcaaagaccaaatgaatatattctccatatgtaccaggtcccgacttatgacacatgtgtcggtaaatataagggtagacattgcttgatatgtttatagtgcccctatatgtctcgagtaaatgagggcagttctcgctaagatatcaaatctttgagctttttcggagaaaaacaaaattaaaactaaaacgacggagattctcatcatcggtaaatcttaagctcagtaataattttcaaacctgtttcgaaggaaagtcacccgattcaatttattattcatgaatatgaactaagttgttgtgtttctaaatcaaatatataagaaataaatccgcttttattattttggttctcaatacaacgtataagtatttatttcgaaaatt
gi|21 : TACAGAA----C----A----GTT-ACTAAACATTTTAATTGCAGACCGCTACA---TTGCACAAACACGC-GCATACATAa
gi|19 : A--GCATGACGACTATGTACAAACAGACGAAGAGAAAGACTGGCAA--ACAA------------------------ACA-CGCACAC--GTGCACACGCC----TTC-ACAGCAAACAT--AC-------------AGGAACACAAGCGTG-----A
gi|6 : C-CACAGTTTTAGCGTCAACTAAAAGCTATGTT-TAATCATTAT--tt
gi|4 : ATATTATAATGGTTATTTCTTGTACAATCTTTTCACCGAATAAA---AAGGGGGAAA----A-CTGAA-AAT---AGTT-TT-AACCATATCTGTA-AATATTAAATGAAAGCTACATCAGTATGAATATA-TA--ACACTTAATAAG-------------CAT-----TCACT-GATGA-T------------ATCTCGCTCGTTAGAAGATTAATTCATAAGCATAATGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAGCCCATAGCAAAGATGAGTTATTAGGGATTGCATATCGGTAGATATGAATCGTAGAAA-ACACTCGAATCCAAATACTTAATGAATATTATTCCAAAGAA--TTTGTCTGTTAGTTTCATTAACCGCACAGTCAAACACTA--A--ATGGAGAGATAGATCATTTGTACTAAGTCCACACTTATGACACGTT-TGCCGGTAAGCATGAGAGTAG-----GTAAAACTTAATATTTTTATATTGCTCCTACATTTTTCAAGTAAAAGAGGATATTCCTTTCTAAGAGACCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTCTCATCATCGCTCAATCTTAAGCTCAATGATAATTGCTCGGATGTATCacaaaataaagtaaaataaacacaggcatattacgatggttatttcttgtacaatctttttaccgagttaacagggaaaaaactgaaaagagttttaaccatgtctgtaaatattaaatgaaagttacatcggtatgaatatataacacttaatatgcattcactgatgatatatcgctcgttagaagattaattcataagcatattgtgaaatgaatttacgactattttagacataagtcttgctcagttttcagctgaagtattttgttttaccaatagcaaagatgagttatttgggattgcatatcggtaaatattaatcgtagaaaacactcgaatccaaatactgaatgaatattattccaaaccatttttgtctgttagtttcattaaccgcacaatcaaacactatcattatggagagatagttcatttgtacaaagtccacacttatgacacgcttgccggtaagcatacgagtaggtaatacttaatattttt
gi|10 : atatattctttatttcctccattagcggagagcgacatatatgttattacataaagaacatattaaacatgaaaaaaaaaacaaagcaaaaaaacatacaaaagtatatcaatattaaatagaataaagcatacaggacacttaacatttgaattgcaaaacgctacacccctgtactaacactcgcagatatacgcaattacagccatacatgaatcaagcgtgatgaggtacaagcagacacgcatacagactgaaaaggaaacatgcacatatactaacgccttcacagacacatgaatatatacatccacagtttaagcgccaactcaaagatttgtttaatcactatacaaaataaagtaaataaacacaggcATATTATAATGGTTATTTCTTGTACAATCTTTTCACCGAATGAA---CAGGGAAAAA----A-CTGAA-AAG---AGTT-TTGAACCATATCTGTA-AATATCAAATGAAAGTTACATCAGTATAGATATA-TA--ACACTTAATATG-------------CGT-----TTACT-GATGA-T------------ATCTCGCTCGTTTGAAGATCAACTCATGAGCATATTGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACCCATAGCAAAGATAATTTATTAGGGGTTGCATAACGGTAGATATGAATCGTAaa
gi|6 : T--CTTGTACAATCTTTTTACCGAGTTAA---CAGGGAAAAA----A-CTGAA-AAG---AGTT-TT-AACCATGTCTGTA-AATATTAAATGAAAGTTACATCGGTATGAATATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATATCGCTCGTTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTT---AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTTACCAATAGCAAAGATGAGTTATTTGGGATTGCATATCGGTAAATATTAATCGTAGAAA-ACACTCGAATCCAAATACTGAATGAATATTATTCCAAACCATTTTTGTCTGTTAGTTTCATTAACCGCACAATCAAACACTATCATTATGGAGAGATAGTTCATTTGTACAAAGTCCACACTTATGACACGCT-TGCCGGTAAGCATACGAGTAG-----GTAATACTTAATATTTTT
gi|5 : ccacagttttagcgtcaactaaaagctatgtttaatcattatacaaaataaagtaaaataaacacaggcatattacgatggttattT--CTTGTACAATCTTTTCACCGAGTAAA---CAGGGCAAAA----A-CTAAA-CAT---AGTT-TT-AACCATGTCTGTA-AATATTAAATGAAAGTTAAATCAGTATCACTATA-TA--ACACTTAATATGTATTCACTGGTGACATCTCGCTCGCTAGAAGA-TTAATTCATAAGCATCTCGCTCGCTAGAAGATTAATTCATAAGCATACTATGGAATGAAATTACGACTATTTTC--AGACATAAGCATTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACC-ATAGCAAAGATGAGTTATTTGGGATTGTATATCGGTAGATATGAATTGTAGAAA-ACACTCGAATCCAAATACTGAATGAATATTATTCCAAATCA--TTTGTCTGTT
gi|9 : atattcattattccctccattagtagaaggcgacatatacgttattacataaagaacatattaaacatgaacatgagtagcaaaaatcatacagaaatatatcaatattaaatagagtaaagcatacaggacacttaacacttgaattgcaaatcgctacaccactgcactaacactcgcagatacacgcaattacagacatacatgaacaaaagcgtgatgaggtataagcatacacgcatacagactaaaaagcaaacacgcacatatactcactccttcacagacacatgaatatgaacaaaaacatgaatgcatacattcacaactttagaatcaacccaaagctgtgtttaatcaccatacaaaataaaataaaataaacacaggcatattacaatggttattT--CTTGTTCCATATTTTCGCTCAGAGAA---CAGAGAAAAA----A---GAA-AAACAAAATTATT-ATTTCTATTT-TATAGTTTTGAATGGAAGTCACAACAGTATGAGTGTATTAGTACCCTTATTATG-------------TAT-----TTATT-gcgtcgtcataccaacaaagactgttagtgtttaaaaata
gi|3 : tgagaatcaacataaagttttggttaactaatatacaacataaagcgaaataatacaaggaaatatagtgtaagtgaaaaacgatcaggattacaacgatatagtaaatcatatcgaaacgaaatatcagacgcacaacacaatcttaatgtacatcagccaaacaaaattatattacaatggttagtTCTGTA-AATATTGAATGAATGTTACATCAGTATGAGTATA-TT--GCCGTTATTATG-------------TAC-----TCATT-GCAGAGT------------ATTCA--TTGTTAGTGACTTAATTCATAAACATATTGTGAAATCAATTTATGACTATTTTC--AGACATAAATCTTGATCTATTTTCAGCTGAAGAATTTCATATAAACAAAAACAAAGATAAGTTATTTAAAATTTCATATCG--------GAA----------------GAATCCACATATTGAGTGAATATTACTCTAAAGCA--CATGTCTGTTCGTTTCATTAACCACACACTCAAAGACCA--A--ATGAATATATTCTCCATATGTACCAGGTCCCGACTTATGACAC-ATGTGTCGGTAAATATAAGGGTAG-----ACATTGCTTGATATGTTTATAGTGCCCCTATATGTCTCGAGTAAATGAGGGCAGTTCTCGCTAAGATATCAAATCTTTGAGCTTTTTCGGAGAAAAACAAAATTAAAACTAAAACGACGGAGATTCTCATCATCGGTAAATCTTAAGCTCAGTAATAATTtcaa
gi|15 : atatcaatgttattacataaaacatgaatatgaacagcaaatcacatacacaaataaatgattatcaaatagagtaaagcataaaagccaattactgaacgttcgaattgcagacactacaatttattaacacgcgcaaatacacgcaatcagatacctgaacaaaagcgtgataatgttcaaacatacatacatacaaactgacaatcaactgaacgttttgtttattcaataggcaaattgaacaaaataataataatacatgtaataataataataaaaaataaatagtgaaaaaaaaacaatcaaaatttagacatcatagtaaactataacgaaacgaaacataaggcactctggtgaaatctgaatgtatatgatatgataaacaaaatacattaaaggagttatttcttattttatctttTTAAACCAAAACAAAGATGAGTTAATTGGGATT---------T-GATAC---TTTTAGAAA-ACACTTGAATCCAAATATTGAGCGTATAGTGCTCCAAAGCA--TTTGCCTGTTTGTTTCATTTACCACACAATCAAAGGCTT--A--ATGAAGAAATAGTTCA-TTGTACTTAGTCTGCACTTATGCCACATT-TGGCTGTAATCATACAAGTAGACATTGTA-----TAATATTTTCATAGTGCTttcaaacctgtttcgaaggaaagtcacccgattcaatttattattcatgaatatgaactaagttgttgtgtttctaaatcaaatatataagaaataaatccgcttttattattttggttctcaatacaacgtataagtatttatttcgaaaatt
gi|20 : aaAAAATCTGAAACAATGGAGCTTCTCATCATCGCTCAATCCTAAGTTCAATAATAATTGTTCGGATTTATATAtg
gi|3 : TAATA-ATTTTCAAACCTGTTTCGAAGGAAAGTCACCCGATTCAATTTATTATTCATGAATATGAACTAAGTTGTTGTGTTTC--TAAATCAAATA--TATAAGAAATAAATCCGCTTTTATTATTTTGGTTCTCAA--TACAACGTATAAGTATTTAa
Alignments
lowQualScore : 111 111111 111111111 1111 333333 11 2222 1111111 222222222 1111111111111111111111 222222222222222222222222222222222222 2222222222222 222222222 111 444444444444444444 1 222 22222 33 111 11111 3333333333333333333 222222222222 22222 1 1 11 11
lowQualScore : 555 0 2 77 9999999 77777 2 33 33 000 222222 444 0 555 555555555 6666 3 3333 5 555555 6 3 22 5555 55 2 1111111 000000000 9999999999999999999999 999999999999999999999999999999999999 666 999999 55 666 55 55 55 0 4 0 77 7777777777777 1 66 000000000 5 5 000 222222222222222222 3 66 5 999 4 33333 22 44 0 4 9 66 00 66 777 4 666 555 11111 4 9999 2 777 4 2 4 66 4444444444444444444 1 5 555555555555 77 4 0 5 77 99999 4 5 1 2 2 2 77777 7 1 0 1 1 22 1 0 11 88 2 1 2 1 0 88 6 88 3 88
lowQualScore : ... . . .. ....... ..... . .. .. ... ...... ... . ... ......... .... . .... . ...... . . .. .... .. . ....... ......... ...................... .................................... ... ...... .. ... .. .. .. . . . .. ............. . .. ......... . . ... .................. . .. . ... . ..... .. .. . . . .. .. .. ... . ... ... ..... . .... . ... . . . .. ................... . . ............ .. . . . .. ..... . . . . . . ..... . . . . . .. . . .. .. . . . . . .. . .. . ..
lowQualScore : 888 7 9 99 3333333 11111 0 99 99 666 666666 444 7 444 222222222 5555 1 1111 8 222222 4 3 33 2222 00 0 8888888 999999999 3333333333333333333333 222222222222222222222222222222222222 444 000000 00 555 55 55 55 1 4 1 99 5555555555555 4 99 000000000 0 0 000 777777777777777777 3 77 2 000 3 55555 22 11 7 6 4 11 66 99 888 4 222 666 11111 4 4444 7 888 4 7 4 11 4444444444444444444 0 0 666666666666 99 5 1 7 99 33333 0 2 0 0 0 0 55555 3 0 7 0 0 00 0 7 77 00 0 0 0 0 7 77 7 33 7 33
consensus : ATATATTCTTTATTTCCTCCATT---AGCGGAGAGCGACATA-T--AT-------GTTA-----TTACATAAAGAACATANTAAACATGAATATGAG--CA--GC--AAA--A-ACACATACAAAA--GTATATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAGAGCGCTACA-CC-C-TGCACTAACACGCGCAGATACACGCAATTACAGACATACATGAATC--AA--GCGTG-------ATGAG---------GTACA--------AG------------CAGAC------------ACGCATA----------------CAGAC---TGAA---AA--GCAN--A--CACG--CGCAT--ATACTCACGCCTTCACAG-ACACATGNAT-------------ATGAAC--AC---------AA-GC-GTG---AAT----ANAT----------AC-ATA-CANAGTTT-AGAGTAAACT---CANAGCCATATTATAATGGTTA--TTTCT--TGTACAATCTTTTCACCGAATAAA---CAGGGAAAA-AA-C-TGAAAAG---AGTT-----TT-A----ACCATGTCTGT---A-AATATTAAATGAAAGTTACATCAGTATGAGTATA-TA--ACACTTAATATGCATTCACT-------------------GATGA-T------------ATCTCGCTCGTTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACCCATAGCAAAGATGAGTTATTTGGGATTGCATATCGGTAGATATGAATCGTAGAAA-ACACTCGAATCCAAATACTGAATGAATATTATTCCAAAGCA--TTTGTCTGTTAGTTTCATTAACCGCACAGTCAAACACTA--A--ATGGAGAGATAGNTCATTTGTACTAAGTCCGCACTTATGACACGTTTGCCGGTAAGCATGNGAGTAGGTAANACTTAATATTTTTATAGTGCTCCTACATTTTTCAAGTAAAAGAGGATATTCCTTGCTAAGGGACCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTCTCATCATCGCTCAATCTTAAGCTCAATGATAATTGCTCGGATGTATCTACATAATTTATTGTCTTATGATATATTTCCAAACATGTTTCGAAGGAAAGACGCCCGATTCGATAAANCGTTCATAAATGTGAACTAAGTTGTAATGTCTTAATAAGTCATATATGTATCAGGAATAAATCCGCTTTTATTATTCGGGTTGTCAA--TANAACGTATAAG--TATTTA
Reference ( family-6539 ) : ATATATTCTTTATTTCCTCCATT---AGCGGAGAGCGACATA-T--AT-------GTTA-----TTACATAAAGAACATANTAAACATGAATATGAA--CA--GC--AAA--A-ANACATACAAAA--GTATATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAGAGCGCTACA-CC-C-TGCACTAACACTCGCAGATACACGCAATTACAGACATACATGAATC--AA--GCGTG-------ATGAG---------GTACA--------AG------------CAGAC------------ACGCATA----------------CAGAC---TGAA---AA--GCAN--A--CACG--CGCAT--ATACTCACGCCTTCACAG-ACACATGNAT-------------ATGAAC--AC---------AA-GC-GTG---AAT----ANAT----------AC-ATN-CACAGTTTNAGAGTCAACT---CAAAGCTATGTTATAATCGTTA--T--CT--TGTACAATCTTTTCACCGAGTAAA---CAGGGAAAA-AA-C-TGAAAAG---AGTT-----TT-A----ACCATGTCTGT---A-AATATTAAATGAAAGTTACATCAGTATGAGTATA-TA--ACACTTAATATGCATTCACT-------------------GANGA-T------------ATCTCGCTCGTTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACCCATAGCAAAGATGAGTTATTTGGGATTGCATATCGGTAGATATGAATCGTAGAAA-ACACTCGAATCCAAATACTGAATGAATATTATTCCAAAGCA--TTTGTCTGTTAGTTTCATTAACCGCACAGTCAAACACTA--A--ATGGAGAGATAGTTCATTTGTACTAAGTCCGCACTTATGACACGTTTGCCGGTAAGCATACGAGTAGGTAANACTTAATATTTTTATAGTGCTCCTACATTTTTCGAGTAAAAGAGGATATTCCTCGCTAAGAGACCAAATCGGCGAGATAATGCCGAGCGATGAGTGATAAAAACTAAAACGATGGAGATTCTCATCATCGCTCAATCTTAAGCTCAATGATAATTGCTCGGATGTATCTACATAATTTATTGTCTTATGATATATTTCCAAACNTGTTTCGAAGGAAAGNCACNCGATTCGATNNANCGTTCATGAATGTGAACTAAGTTGTNGTGTCTCAATAAGTCANATATGTATNAGGAATAAACCCGCTTTTATTATTTTGGTTCTCAA--TACAACGTATAAG--TATTTA
gi|1 : TATATTCTTTATTTCCTCCATT---AGCGGAGAGAGACATA-T--AT-------GTTA-----TTACATAAAGAACATAATAAATATGAACATGAA--TA--GC--AAA--A-AAACACACAAAA--GTATATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAAAACGCTACA-CC-CCTGCACTAACACTCGCAGCTATACGCAACTACAGACATACATGAATC--AA--TCGTG-------ATGAG---------GTATA--------AGCAGACACGCATACAGACTGAAAAGGAAACATGCATA----------------TATAC---T--A---AC--GCCTTCA--CAGA--CACATGAATACGAACACAATCATGA-ATACATACATCCACAGTTTTAGCATCAACTCAA---------AA-AT-GTGTTTAATCA--ATAT----------AC-AAAACAAAGT----AAATAAACA---CAG-GC-ATGTTATAATGGTTA--TTTCT--TGTACAATCTTTTCACCGAAAAAAAAACAGGGAAAA-AAAC-TGAAAAG---AGTT-----TT-A----ACCATATCTGT---A-AATATTAAATGAGAGTTACATCAGTATGAATATA-TA--ACACTTAATATGCATTCACT-------------------GATGA-T------------ATCTCGCTCGTTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTTTTTAGACATAAGTCTTGCTCGGTTTTCATCTGAAGTGTTTTGTTTAACCTATAGCAAAGATGAGTTATTTGGGATTGAATATCCGTAGATATGAATCATAAAAATACACTCGAATCAAAATACTGAATGAATATTATTCCAATGCA--TTTGTCAGTTAGTTTCATTAACCGCATAGCCAAACACTA--A--ATGGAGAGATAGATCATTTGTACTAAGTCCGCATTTATGACACGTTTGCAGGTAAGCATGTGAGTAGGTAAAACTTAATATTTTTACAGTGCTCCTACATTTTTCAATTAAAAGAGGATATTCCTTGCTAAGGGTCCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTGTCATCATCGCTCAATCTTAAGCTCAATGATAATTGCTCGGATGTATCTACATAATTTATTGTCTTATGATATATTTCCAAACATGTTTTGAAGGAAAGACACACGATTCGATAAAGCGTTCATAAATGTGAACTAAGTTGTAATGTCTTAATAAGTTATATATGTATCAGGAATAAACCCTCTTTTATTATACGGGTTGTCAT--TATAACGTATAAGTCTATTTA
gi|10 : ATATTATAATGGTTA--TTTCT--TGTACAATCTTTTCACCGAATGAA---CAGGGAAAA-AA-C-TGAAAAG---AGTT-----TTGA----ACCATATCTGT---A-AATATCAAATGAAAGTTACATCAGTATAGATATA-TA--ACACTTAATATGCGTTTACT-------------------GATGA-T------------ATCTCGCTCGTTTGAAGATCAACTCATGAGCATATTGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACCCATAGCAAAGATAATTTATTAGGGGTTGCATAACGGTAGATATGAATCGTAaaagta
gi|11 : TATATTCTTTCTTTCCTCAATT---AACGGAGGGCAACATA-T--TT-------GTTA-----TGACATAAAGAACATATTAAATACGAACATGAG--CA--GC--AAAT-A-ACACACACCAA----TATATCAATATTAA---ATAGAGTAAAAGGGACAGGA----C----A----CTT-T----ACATTTGAATTGCAAAGCGCTACA----T-TGCACTAACATTCGCAGATACACG--------------CATGAA-CAAAA--GCGTG-------ATGAG---------GTACA--------AG------------CAGAC------------ACATATA----------------CAGAC---TAGA---AA--GCAT--A--CACG--CGCAT--ATACCCGCGCATTCACAG-ACACATGGAT-------------ATCAAC--AC---------AA-GC-AT
gi|12 : ACATTCTTTATTTCTTCCGGT---AACTAAGAGTAACATG-T--ATTTTTTATGTTA-----TTATTGAAAGATCACAGTAAACATGAATATGAA--CA--GC--AAA---------T-CA------CGTATCACTATTAA---ATAGAGTAAAACAAACAGGA----C----AATTTCTTAA----ACATTTGAATTGCAGAGCACTACA----T-TGCACTAGCATGCGCAGATACAGTTAATTACAGA-------AAACC--AT--CCATG--------TAAG---------GCACA--------AG------------CAAAC------------ACGCGCT----------------CATAC---TCAC---ACCTTCAC--A--CACG--CGCTT--ATACTCACGCCTTCACAC-AC
gi|13 : ATA-T--AT-------ATTACATAATTATATAAAGAGCATTATAAACAAGAATATGAA--CA--GC--AAATCA-GAA---ACAAAA--G-ATGTCATTATTAA---ATAGAGCAAAG----GAGAAT---T----A----CTT-A----ACATTTGAATTTCAGAACGCTATA----A-TGCACGAACACGCACAGATACCGGCAAATTCAGTTGTACGT-AATT--AG--GC-TA-------A-AAA---------ATACA--------GG------------CAGAC------------A--TATA-----------------AG--------A---AA--CTAT--A--TATG--TGCAT--TTAGTCACCATTTTTCTA-CCACATATAC-------------ATGAAC--AT---------AA-TC-GCG---AAT----AAGT----------AC-ATA-CAg
gi|14 : TTTTCTCCATT---AGCGGAGAGCGACATA-T--AT-------GTTA-----TTACATAAAGAACATATTAAACATGAATATGAG--TA--GC--AAA--ACAAATATTCAAAA--GTATATTAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----GTT-T----ACATTTGAATTGCAAAGTGCTACA-CCAC-TGCACTAACACGCACAGATACACGCAATTACAGACATATATGAA-CAAAA--GCGTG-------ATGAT---------GTACA--------AG------------CAGTC------------ACCCATA----------------CAGAC---TAAA---AT--GCAA--A--CAC---TGTAT--ACACga
gi|15 : tattTTAAACCAAAACAAAGATGAGTTAATTGGGATT---------T-GATAC---TTTTAGAAA-ACACTTGAATCCAAATATTGAGCGTATAGTGCTCCAAAGCA--TTTGCCTGTTTGTTTCATTTACCACACAATCAAAGGCTT--A--ATGAAGAAATAGTTCA-TTGTACTTAGTCTGCACTTATGCCACATTTGGCTGTAATCATACAAGTAGACATTGTATAATATTTTCATAGTGCT
gi|16 : aaTATGTCCTCTAGT---AGCGCAGTGCAGCATA-T--TT-------GTTA-----TTACATTAAGAATATAATAGATATTAATATAAG--CG--GC---AA--A-CCACATGCATAA--GGATATC---GTGAAAACATACACTGAAACGTACAGGA----C----A----ATT-ACTGTACATTTGACTTACAGAtg
gi|17 : TATATTCTTTATTACCT---TTCAAATCGGAGAGCAACATC-A--AT-------GTTA-----TCACAC--AGAAAATAGTAAACATGAATATG-A--CA--TC----A--A-ACACATACAAAAATATATATCAATGATAT---AAAGAGCAATGCAT
gi|18 : attTATTATTTGTTTC-TGCAGT---ACCAGGGAGCAGCATACT--TT-------CATA-----TTACATAAAGAACATAGT--ACATGAATGTGAA--CA--GCCGCAA--A-TTACATGCAAGA--AGATA
gi|19 : catgtacA--GCATG-------ACGACTAT------GTACA--------AA------------CAGAC------------GAAGAGA----------------AAGAC---TGGC---AA--ACAA--A--CACG--CACAC--GTGCACACGCCTTCACAGCAAACAT--AC-------------AGGAAC--AC---------AA-GC-GTG---Ag
gi|2 : ATATATTCTTTATTTCCTCCATT---AGCGGAGAGCAACATA-T--AT-------GTTA-----TTACATAAAGAACATATTAAACATGAACATGAG--TA--GC--AAA--A-AAACATACAAAA--GTTTATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAAAACGCTACACCC-C-TGTACTAACACTGGCAGATATACGCAATTACAGACATACATGAATC--AA--GCGTG-------ATGAG---------GTACA--------AG------------CAGAC------------ACGCAAA----------------CAGAC---TGAA---AA--GGAA--A--CATG--CACAT--ATACTAACGCCTTCACAG-ACACATGAAT-------------ATGAAC--AC---------AA-AC-ATG---AAT----ACAT----------AC-ATC-CACAGTTTTAGAGTCAACT---CAATGCTATGTT-TAATCACTA--T--CT--TGTATAATCTTTTCACCGAATAAA---CAGGGGAAA-AA-C-TGAAAAG---AGTT-----TT-A----ACAATATCTGT---A-AATATTAAATGAAAGTTACATCAGTATGACTATA-TA--ACACTTAATATGCATTCACT-------------------GATGA-T------------ATCCCGCTCATTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACCCATAGCAAAGATGAGTTATTTGGGATTGCATATCGGTAGATATGAATCGTAGAAA-ACACTCGAATCCAAATGCTGAATGAATATTATTCCAAAGCA--TTTGTCTGTTAGTTTCATTAACCGCACAGTCAAACACTA--A--ATGGAGAGATAGATCATTTGTACTAAGTCCGCACTTATGACACGATTGCCGGTAAGCATGAGAGTAGGTAAAACTTAATATTTTTATAGTGCTCCTACATTTTTCAAGTAAAAGAGGATATTCCTTGCTAAGGGACCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTCTCATCATCGCTCAATCTTAAGTTCAATGATAATTGCTCGAATGTATCTACA-----TATTGTCTTATGATATATTTCCAAACATGTTTTGAAGGAAAGACGCCCGATTCGATAAAACGTTCATAAATGTGAACTAAGTTGTAATGCCTTAATAAGT--TATATATATCAGGAATAAATCAGTTCCAGTCATTCAGTTTGTAAAAGTAAGATATATAAT--GATTTAtt
gi|20 : AAAATCTGAAACAATGGAGCTTCTCATCATCGCTCAATCCTAAGTTCAATAATAATTGTTCGGATTTATATA
gi|21 : TACAGAA----C----A----GTT-ACTAAACATTTTAATTGCAGACCGCTACA----T-TGCACAAACACGCGC--ATACAa
gi|3 : ATA-TCAAT-------GTTA-----TTACATAAA-----------ACATGAATATGAA--CA--GC--AAA--T--CACATACACAA--ATAAATGATTATCAA---ATAGAGTAAAGCATAAAAGC----CAATTA----CTG-A----ACGTTCGAATTGCAGA-CACTACA-AT-T-T--ATTAACACGCGCAAATACACGCAAT--CAG--ATACCTGAA-CAAAA--GCGTG-------ATAAT---------GTTCA--------AA------------CATAC------------ATACATA----------------CAAAC---TGAC---AA--TCAta
gi|3 : TAAA---CA----AAA-TA-CATTAAAGG---AGTTATTTCTT-ATTTTATCTTTTCTGT---A-AATATTGAATGAATGTTACATCAGTATGAGTATA-TT--GCCGTTATTATGTACTCATT-------------------GCAGAGT------------AT-TCATT-GTTAGTGACTTAATTCATAAACATATTGTGAAATCAATTTATGACTATTTTC--AGACATAAATCTTGATCTATTTTCAGCTGAAGAATTTCATATAAACAAAAACAAAGATAAGTTATTTAAAATTTCATATCG--------GAA----------------GAATCCACATATTGAGTGAATATTACTCTAAAGCA--CATGTCTGTTCGTTTCATTAACCACACACTCAAAGACCA--A--ATGAATATATTCTCCATATGTACCAGGTCCCGACTTATGACACATGTGTCGGTAAATATAAGGGTAGACATTGCTTGATATGTTTATAGTGCCCCTATATGTCTCGAGTAAATGAGGGCAGTTCTCGCTAAGATATCAAATCTTTGAGCTTTTTCGGAGAAAAACAAAATTAAAACTAAAACGACGGAGATTCTCATCATCGGTAAATCTTAAGCTCAGTAATAATTactgaacgttttgtttattcaataggcaaattgaacaaaataataataatacatgtaataataataataaaaaataaatagtgaaaaaaaaacaatcaaaatttagacatcatagtaaactataacgaaacgaaacataaggcactctggtgaaatctgaatgtatatgatatgataaacaaaatacattaaaggagttatttcttattttatcttttctgtaaatattgaatgaatgttacatcagtatgagtatattgccgttattatgtactcattgcagagtattcattgttagtgacttaattcataaacatattgtgaaatcaatttatgactattttcagacataaatcttgatctattttcagctgaagaatttcatataaacaaaaacaaagataagttatttaaaatttcatatcggaagaatccacatattgagtgaatattactctaaagcacatgtctgttcgtttcattaaccacacactcaaagaccaaatgaatatattctccatatgtaccaggtcccgacttatgacacatgtgtcggtaaatataagggtagacattgcttgatatgtttatagtgcccctatatgtctcgagtaaatgagggcagttctcgctaagatatcaaatctttgagctttttcggagaaaaacaaaattaaaactaaaacgacggagattctcatcatcggtaaatcttaagctcagtaataattttcaaacctgtttcgaaggaaagtcacccgattcaatttattattcatgaatatgaactaagttgttgtgtttctaaatcaaatatataagaaataaatccgcttttattattttggttctcaatacaacgtataagtatttatttcgaaaatt
gi|3 : atatcaatgttattacataaaacatgaatatgaacagcaaatcacatacacaaataaatgattatcaaatagagtaaagcataaaagccaattactgaacgttcgaattgcagacactacaatttattaacacgcgcaaatacacgcaatcagatacctgaacaaaagcgtgataatgttcaaacatacatacatacaaactgacaatcaactgaacgttttgtttattcaataggcaaattgaacaaaataataataatacatgtaataataataataaaaaataaatagtgaaaaaaaaacaatcaaaatttagacatcatagtaaactataacgaaacgaaacataaggcactctggtgaaatctgaatgtatatgatatgaTAATA-ATTTTCAAACCTGTTTCGAAGGAAAGTCACCCGATTCAATTTATTATTCATGAATATGAACTAAGTTGTTGTGTTTC--TAAATCAAATAT--ATAAGAAATAAATCCGCTTTTATTATTTTGGTTCTCAA--TACAACGTATAAG--TATTTAttcaaacctgtttcgaaggaaagtcacccgattcaatttattattcatgaatatgaactaagttgttgtgtttctaaatcaaatatataagaaataaatccgcttttattattttggttctcaatacaacgtataagtatttatttcgaaaatt
gi|4 : atatcaatgttattacataaaacatgaatatgaacagcaaatcacatacacaaataaatgattatcaaatagagtaaagcataaaagccaattactgaacgttcgaattgcagacactacaatttattaacacgcgcaaatacacgcaatcagatacctgaacaaaagcgtgataatgttcaaacatacatacatacaaactgacaatcaactgaacgttttgtttattcaataggcaaattgaacaaaataataataatacatgtaataataataataaaaaataaatagtgaaaaaaaaacaatcaaaatttagacatcatagtaaactataacgaaacgaaacataaggcactctggtgaaatctgaatgtatatgatatgataaacaaaatacattaaaggagttatttcttattttatcttttctgtaaatattgaatgaatgttacatcagtatgagtatattgccgttattatgtactcattgcagagtattcattgttagtgacttaattcataaacatattgtgaaatcaatttatgactattttcagacataaatcttgatctattttcagctgaagaatttcatataaacaaaaacaaagataagttatttaaaatttcatatcggaagaatccacatattgagtgaatattactctaaagcacatgtctgttcgtttcattaaccacacactcaaagaccaaatgaatatattctccatatgtaccaggtcccgacttatgacacatgtgtcggtaaatataagggtagacattgcttgatatgtttatagtgcccctatatgtctcgagtaaatgagggcagttctcgctaagatatcaaatctttgagctttttcggagaaaaacaaaattaaaactaaaacgacggagattctcatcatcggtaaatcttaagctcagATATATTCTTTATTTCCTCCATT---AGCGGAGAGCGACATA-T--AT-------GTTA-----TTACATAAAGAACATATTAAACATGAAAAAAAAAACAAAGC--AAA--A-AAACATACAAAA--GTATATCAATATTAA---ATAGAATAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAAAACGCTACA-CC-CCTGTACTAACACTCGCAGATATACGCAATTACAGCCATACATGAATC--AA--GCGTG-------ATGAG---------GTACA--------AG------------CAGAC------------ACGCATA----------------CAGAC---TGAA---AA--GGAA--A--CATG--CACAT--ATACTAACGCCTTCACAG-ACACATGAAT-------------ATATAC--ATCCACAGTTTAA-GC-GCC---AACTCAAAGATTTGTTTAATCACTATA-CAAAAT---AAAGTAAA-TAAACACAGGCATATTATAATGGTTA--TTTCT--TGTACAATCTTTTCACCGAATAAA---AAGGGGGAA-AA-C-TGAAAAT---AGTT-----TT-A----ACCATATCTGT---A-AATATTAAATGAAAGCTACATCAGTATGAATATA-TA--ACACTTAATAAGCATTCACT-------------------GATGA-T------------ATCTCGCTCGTTAGAAGATTAATTCATAAGCATAATGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAGCCCATAGCAAAGATGAGTTATTAGGGATTGCATATCGGTAGATATGAATCGTAGAAA-ACACTCGAATCCAAATACTTAATGAATATTATTCCAAAGAA--TTTGTCTGTTAGTTTCATTAACCGCACAGTCAAACACTA--A--ATGGAGAGATAGATCATTTGTACTAAGTCCACACTTATGACACGTTTGCCGGTAAGCATGAGAGTAGGTAAAACTTAATATTTTTATATTGCTCCTACATTTTTCAAGTAAAAGAGGATATTCCTTTCTAAGAGACCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTCTCATCATCGCTCAATCTTAAGCTCAATGATAATTGCTCGGATGTATCtttcgaaaatt
gi|5 : ATATTCATTATTCCCTCCATT---AGTAGAAGGCGACATA-T--AC-------GTTA-----TTACATAAAGAACATATTAAACATGAACATGAG--TA--GC--AAA--A-AT-CATACAGAA--ATATATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACACTTGAATTGCAAATCGCTACA-CCAC-TGCACTAACACTCGCAGATACACGCAATTACAGACATACATGAA-C--AAAAGCGTGATGAGGTATAAGCATACACGCATACAGACTAAAAAG------------CAAAC------------ACGCACATATACTCACTCCTTCACAGACACATGAATATGA--ACAA--AAACATGAATGCAT--ACATTCACAACTTTA--G-A----------------------ATCAAC--CC---------AAAGCTGTG---TTT----AATC----------ACCATA-CAAAAT---AAAATAAAATAAACACAGGCATATTACAATGGTTA--TTTCT--TGTACAATCTTTTCACCGAGTAAA---CAGGGCAAA-AA-C-TAAACAT---AGTT-----TT-A----ACCATGTCTGT---A-AATATTAAATGAAAGTTAAATCAGTATCACTATA-TA--ACACTTAATATGTATTCACTGGTGACATCTCGCTCGCTAGAAGA-TTAATTCATAAGCATCTCGCTCGCTAGAAGATTAATTCATAAGCATACTATGGAATGAAATTACGACTATTTTC--AGACATAAGCATTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACC-ATAGCAAAGATGAGTTATTTGGGATTGTATATCGGTAGATATGAATTGTAGAAA-ACACTCGAATCCAAATACTGAATGAATATTATTCCAAATCA--TTTGTCTGTTaa
gi|6 : -CACAGTTTTAGCGTCAACT---AAAAGCTATGTT-TAATCATTA--T--gcgtcgtcataccaacaaagactgttagtgtttaaaaata
gi|6 : c---CACAGGCATATTACGATGGTTA--TTTCT--TGTACAATCTTTTTACCGAGTTAA---CAGGGAAAA-AA-C-TGAAAAG---AGTT-----TT-A----ACCATGTCTGT---A-AATATTAAATGAAAGTTACATCGGTATGAATATA-TA--ACACTTAATATGCATTCACT-------------------GATGA-T------------ATATCGCTCGTTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTT---AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTTACCAATAGCAAAGATGAGTTATTTGGGATTGCATATCGGTAAATATTAATCGTAGAAA-ACACTCGAATCCAAATACTGAATGAATATTATTCCAAACCATTTTTGTCTGTTAGTTTCATTAACCGCACAATCAAACACTATCATTATGGAGAGATAGTTCATTTGTACAAAGTCCACACTTATGACACGCTTGCCGGTAAGCATACGAGTAGGTAATACTTAATATTTTTacaaaataaagtaaaataaacacaggcatattacgatggttatttcttgtacaatctttttaccgagttaacagggaaaaaactgaaaagagttttaaccatgtctgtaaatattaaatgaaagttacatcggtatgaatatataacacttaatatgcattcactgatgatatatcgctcgttagaagattaattcataagcatattgtgaaatgaatttacgactattttagacataagtcttgctcagttttcagctgaagtattttgttttaccaatagcaaagatgagttatttgggattgcatatcggtaaatattaatcgtagaaaacactcgaatccaaatactgaatgaatattattccaaaccatttttgtctgttagtttcattaaccgcacaatcaaacactatcattatggagagatagttcatttgtacaaagtccacacttatgacacgcttgccggtaagcatacgagtaggtaatacttaatattttt
gi|7 : ccacagttttagcgtcaactaaaagctatgtttaatcattatacaaaataaagtaaaataaaTATATTCTTTATTTCTTCAATA---AAATGATACCAACATA-T--AT-------GTAA-----TTACATAAAGAACATAGTAAACATGAATATGAG--CA--TC---AA--A-TCACATACAAAA--ATATATCAATATTAA---AAAGAGTAAAGCATACAGGA----CAATTA----CTT-A----ACATTTGAATTGTAGATCGTTACA----T-TGCACTAACAC-------TAAACGTAATT-TGG-------TAAAT-------GC-------------AG-----------ACA--------CG------------CAGAC-----------------TA-------------------AC---TAGC---AA--GCAT--A--CACG--CGCAT--ATATTCACGCATTCACAG-ACACATGGAT-------------ATGAAC--AC---------AA-GC-ATG---ATT----AGGA----------AC-ATA-CATAGTCTAAGAGTATACT---TAAAGCTATAT--------TTA--T--TTAATATACAA-----------AATAAA------GCAAAATAA-T-ACAAAAGAAAAGTT-----TT-A----ACTCTGTCTAT---T-AAAATTAAATGAACGTTACATCAGTATGAGTATA-TT--ACAATTAATATGCATTCACT-------------------GAAGA-T------------ATCTCGCCCGTTAGAAGATTAATTCATAAGCGTATTGTCAAATGAATTTACAACCA
gi|8 : aaatTTATTTCATCCATT---AACTGAGAGCAACTTT-TTCAT-------GTTA-----TTACATAAAGAACATAATAAACATGAATATGAA--CA--AC---TA--A-TCCCATACAAAG--ATATACCATTATTAA---ATAGAATAAAGCATACACGAAAATT----A----CTT-A----ATA-TTGAAATACAGAGCGCTATA-
gi|9 : taattgAGCCAAA----CAAAATTATATTACAATGGTTAGTT--CT--TGTTCCATATTTTCGCTCAGAGAA---CAGAGAAAA-AA----GAAAAACAAAATT-------------ATTATTTCTATTTTATAGTTTTGAATGGAAGTCACAACAGTATGAGTGTATTAGTACCCTTATTATGTATTTATT-------------------tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacatcgagaggctgagaatcaacataaagttttggttaactaatatacaacataaagcgaaataatacaagga
Alignments
lowQualScore : 222 111111111 1111 33333 11 2222 1111111 222222222 1111111111111111111111 222222222222222222222222222222222222 2222222222222 222222222 111 444444444444444444 1 444 33333 111 11111 2222222222222 11111 222222222222 22222 1 11 11
lowQualScore : 555 0 2 77 9999999 77777 2 555 33 111 2 5 33 444 0 555 555555555 6666 3 3333 5 55555 5 3 22 5555 55 2 1111111 000000000 9999999999999999999999 999999999999999999999999999999999999 666 999999 55 666 55 55 55 0 4 0 77 7777777777777 1 66 000000000 5 5 000 222222222222222222 1 5 1 666 0 55555 1 6 0 777 4 666 555 11111 4 9999 2 777 4 2 4 66 4444444444444 11111 4 0 5 555555555555 77 4 0 5 77 99999 1 1 1 77777 7 0 0 1 7 2 0 7 3 88 1 88
lowQualScore : ... . . .. ....... ..... . ... .. ... . . .. ... . ... ......... .... . .... . ..... . . .. .... .. . ....... ......... ...................... .................................... ... ...... .. ... .. .. .. . . . .. ............. . .. ......... . . ... .................. . . . ... . ..... . . . ... . ... ... ..... . .... . ... . . . .. ............. ..... . . . ............ .. . . . .. ..... . . . ..... . . . . . . . . . .. . ..
lowQualScore : 888 7 9 99 3333333 11111 0 555 99 111 9 5 99 444 7 444 222222222 5555 1 1111 8 55555 9 3 33 2222 00 0 8888888 999999999 3333333333333333333333 222222222222222222222222222222222222 444 000000 00 555 55 55 55 1 4 1 99 5555555555555 4 99 000000000 0 0 000 777777777777777777 4 7 0 555 7 88888 0 6 1 888 4 222 666 11111 4 4444 7 888 4 7 4 11 4444444444444 11111 4 8 0 666666666666 99 5 1 7 99 33333 0 0 0 55555 3 7 7 0 3 0 7 3 7 33 0 33
consensus : ATATATTCTTTATTTCCTCCATT---AGCGGAGAGCGACATA-T--AT-------GTTA-----TTACATAAAGAACATANTAAACATGAATATGAG--CA--GC--AAA-ANCACATA--CAAAA--GTATATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAGAGCGCTACACC-C-TGCACTAACACGCGCAGATACACGCAATTACAGACATACATGAATC--AA--GCGTG-------ATGAG---------GTACA--------AG------------CAGAC------------ACGCATA----------------CAGAC---TGAA---AA--GCAN--A--CACG--CGCAT--ATACTCACGCCTTCACAG-ACACATGNAT-------------ATGAAC--AC---------AA-GC-GTG---AAT----ANAT----------AC-ATA-CAAAGT---AAAGTAAACTAAACACAGGCATATTACAATGGTTATTTCTTGTACAATCTTTTCACCGAATAAA---CAGGGAAAA-AA-C-TGAAAAG---AGTT-----TT-A----ACCATGTCTGT---A-AATATTAAATGAAAGTTACATCAGTATGAGTATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATCTCGCTCGTTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACCCATAGCAAAGATGAGTTATTTGGGATTGCATATCGGTAGATATGAATCGTAGAAA-ACACTCGAATCCAAATACTGAATGAATATTATTCCAAAGCA--TTTGTCTGTTAGTTTCATTAACCGCACAGTCAAACACTA--A--ATGGAGAGATAGNTCATTTGTACTAAGTCCGCACTTATGACACGTTTGCCGGTAAGCATGNGAGTAGGTAANACTTAATATTTTTATAGTGCTCCTACATTTTTCAAGTAAAAGAGGATATTCCTTGCTAAGGGACCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTCTCATCATCGCTCAATCTTAAGCTCAATGATAATTGCTCGGATGTATCTACATAATTTATTGTCTTATGATATATTTCCAAACATGTTTCGAAGGAAAGACGCCCGATTCGATAAANCGTTCATAAATGTGAACTAAGTTGTAATGTCTTAATAAGTCATATATATATCAGGAATAAATCCGCTTTTATTATTCGGGTTGTCAA--TANAACGTATAAG--TATTTA
Reference ( family-6539 ) : ATATATTCTTTATTTCCTCCATT---AGCGGAGAGCGACATA-T--AT-------GTTA-----TTACATAAAGAACATANTAAACATGAATATGAG--CA--GC--AAA-AACACATA--CAAAA--GTATATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAGAGCGCTACACC-C-TGCACTAACACGCGCAGATACACGCAATTACAGACATACATGAATC--AA--GCGTG-------ATGAG---------GTACA--------AG------------CAGAC------------ACGCATA----------------CAGAC---TGAA---AA--GCAN--A--CACG--CGCAT--ATACTCACGCCTTCACAG-ACACATGNAT-------------ATGAAC--AC---------AA-GC-GTG---AAT----ANAT----------AC-ATA-CANAGTTT-AGAGTAAACT---CANAGCCATATTATAATGGTTATTTCTTGTACAATCTTTTCACCGAATAAA---CAGGGAAAA-AA-C-TGAAAAG---AGTT-----TT-A----ACCATGTCTGT---A-AATATTAAATGAAAGTTACATCAGTATGAGTATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATCTCGCTCGTTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACCCATAGCAAAGATGAGTTATTTGGGATTGCATATCGGTAGATATGAATCGTAGAAA-ACACTCGAATCCAAATACTGAATGAATATTATTCCAAAGCA--TTTGTCTGTTAGTTTCATTAACCGCACAGTCAAACACTA--A--ATGGAGAGATAGNTCATTTGTACTAAGTCCGCACTTATGACACGTTTGCCGGTAAGCATGNGAGTAGGTAANACTTAATATTTTTATAGTGCTCCTACATTTTTCAAGTAAAAGAGGATATTCCTTGCTAAGGGACCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTCTCATCATCGCTCAATCTTAAGCTCAATGATAATTGCTCGGATGTATCTACATAATTTATTGTCTTATGATATATTTCCAAACATGTTTCGAAGGAAAGACGCCCGATTCGATAAANCGTTCATAAATGTGAACTAAGTTGTAATGTCTTAATAAGTCATATATGTATCAGGAATAAATCCGCTTTTATTATTCGGGTTGTCAA--TANAACGTATAAG--TATTTA
gi|1 : TATATTCTTTATTTCCTCCATT---AGCGGAGAGAGACATA-T--AT-------GTTA-----TTACATAAAGAACATAATAAATATGAACATGAA--TA--GC--AAA-AAAACACA--CAAAA--GTATATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAAAACGCTACACC-CCTGCACTAACACTCGCAGCTATACGCAACTACAGACATACATGAATC--AA--TCGTG-------ATGAG---------GTATA--------AGCAGACACGCATACAGACTGAAAAGGAAACATGCATA----------------TATAC---T--A---AC--GCCTTCA--CAGA--CACATGAATACGAACACAATCATGA-ATACATACATCCACAGTTTTAGCATCAACTCAA---------AA-AT-GTGTTTAATCA--ATAT----------AC-AAAACAAAGT----AAATAAAC-----ACAGGCATGTTATAATGGTTATTTCTTGTACAATCTTTTCACCGAAAAAAAAACAGGGAAAA-AAAC-TGAAAAG---AGTT-----TT-A----ACCATATCTGT---A-AATATTAAATGAGAGTTACATCAGTATGAATATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATCTCGCTCGTTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTTTTTAGACATAAGTCTTGCTCGGTTTTCATCTGAAGTGTTTTGTTTAACCTATAGCAAAGATGAGTTATTTGGGATTGAATATCCGTAGATATGAATCATAAAAATACACTCGAATCAAAATACTGAATGAATATTATTCCAATGCA--TTTGTCAGTTAGTTTCATTAACCGCATAGCCAAACACTA--A--ATGGAGAGATAGATCATTTGTACTAAGTCCGCATTTATGACACGTTTGCAGGTAAGCATGTGAGTAGGTAAAACTTAATATTTTTACAGTGCTCCTACATTTTTCAATTAAAAGAGGATATTCCTTGCTAAGGGTCCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTGTCATCATCGCTCAATCTTAAGCTCAATGATAATTGCTCGGATGTATCTACATAATTTATTGTCTTATGATATATTTCCAAACATGTTTTGAAGGAAAGACACACGATTCGATAAAGCGTTCATAAATGTGAACTAAGTTGTAATGTCTTAATAAGTTATATATGTATCAGGAATAAACCCTCTTTTATTATACGGGTTGTCAT--TATAACGTATAAGTCTATTTA
gi|10 : ATATTATAATGGTTATTTCTTGTACAATCTTTTCACCGAATGAA---CAGGGAAAA-AA-C-TGAAAAG---AGTT-----TTGA----ACCATATCTGT---A-AATATCAAATGAAAGTTACATCAGTATAGATATA-TA--ACACTTAATATG-------------CGT-----TTACT-GATGA-T------------ATCTCGCTCGTTTGAAGATCAACTCATGAGCATATTGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACCCATAGCAAAGATAATTTATTAGGGGTTGCATAACGGTAGATATGAATCGTAaaagta
gi|11 : TATATTCTTTCTTTCCTCAATT---AACGGAGGGCAACATA-T--TT-------GTTA-----TGACATAAAGAACATATTAAATACGAACATGAG--CA--GC--AAATAACACACA--CCAA----TATATCAATATTAA---ATAGAGTAAAAGGGACAGGA----C----A----CTT-T----ACATTTGAATTGCAAAGCGCTACA---T-TGCACTAACATTCGCAGATACACG--------------CATGAA-CAAAA--GCGTG-------ATGAG---------GTACA--------AG------------CAGAC------------ACATATA----------------CAGAC---TAGA---AA--GCAT--A--CACG--CGCAT--ATACCCGCGCATTCACAG-ACACATGGAT-------------ATCAAC--AC---------AA-GC-AT
gi|12 : ACATTCTTTATTTCTTCCGGT---AACTAAGAGTAACATG-T--ATTTTTTATGTTA-----TTATTGAAAGATCACAGTAAACATGAATATGAA--CA--GC---AA-ATCAC--------------GTATCACTATTAA---ATAGAGTAAAACAAACAGGA----C----AATTTCTTAA----ACATTTGAATTGCAGAGCACTACA---T-TGCACTAGCATGCGCAGATACAGTTAATTACAGA-------AAACC--AT--CCATG--------TAAG---------GCACA--------AG------------CAAAC------------ACGCGCT----------------CATAC---TCAC---ACCTTCAC--A--CACG--CGCTT--ATACTCACGCCTTCACAC-AC
gi|13 : ATA-T--AT-------ATTACATAATTATATAAAGAGCATTATAAACAAGAATATGAA--CA--GC---AA-ATCAGAAA--CAAAA--G-ATGTCATTATTAA---ATAGAGCAAAG----GAGAAT---T----A----CTT-A----ACATTTGAATTTCAGAACGCTATA---A-TGCACGAACACGCACAGATACCGGCAAATTCAGTTGTACGT-AATT--AG--GC-TA-------A-AAA---------ATACA--------GG------------CAGAC------------A--TATA-----------------AG--------A---AA--CTAT--A--TATG--TGCAT--TTAGTCACCATTTTTCTA-CCACATATAC-------------ATGAAC--AT---------AA-TC-GCG---AAT----AAGT----------AC-ATA-CAGAg
gi|14 : TTTTCTCCATT---AGCGGAGAGCGACATA-T--AT-------GTTA-----TTACATAAAGAACATATTAAACATGAATATGAG--TA--GC---AA-AACAAATATTCAAAA--GTATATTAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----GTT-T----ACATTTGAATTGCAAAGTGCTACACCAC-TGCACTAACACGCACAGATACACGCAATTACAGACATATATGAA-CAAAA--GCGTG-------ATGAT---------GTACA--------AG------------CAGTC------------ACCCATA----------------CAGAC---TAAA---AT--GCAA--A--CAC---TGTAT--ACAC
gi|15 : tattTTAAACCAAAACAAAGATGAGTTAATTGGGATT---------T-GATAC---TTTTAGAAA-ACACTTGAATCCAAATATTGAGCGTATAGTGCTCCAAAGCA--TTTGCCTGTTTGTTTCATTTACCACACAATCAAAGGCTT--A--ATGAAGAAATAGTTCA-TTGTACTTAGTCTGCACTTATGCCACATTTGGCTGTAATCATACAAGTAGACATTGTATAATATTTTCATAGTGCT
gi|16 : aaTATGTCCTCTAGT---AGCGCAGTGCAGCATA-T--TT-------GTTA-----TTACATTAAGAATATAATAGATATTAATATAAG--CG--GC---AA-ACCACATG--CATAA--GGATATC---GTGAAAACATACACTGAAACGTACAGGA----C----A----ATT-ACTGTACATTTGACTTACAGAtg
gi|17 : TATATTCTTTATTACCT---TTCAAATCGGAGAGCAACATC-A--AT-------GTTA-----TCACAC--AGAAAATAGTAAACATGAATATGA---CA--TC----A-AACACATA--CAAAAATATATATCAATGATAT---AAAGAGCAATGCAT
gi|18 : attTATTATTTGTTTC-TGCAGT---ACCAGGGAGCAGCATACT--TT-------CATA-----TTACATAAAGAACATAGT--ACATGAATGTGAA--CA--GCCGCAA-ATTACATG--CAAGA--AGATA
gi|19 : catgtacA--GCATG-------ACGACTAT------GTACA--------AA------------CAGAC------------GAAGAGA----------------AAGAC---TGGC---AA--ACAA--A--CACG--CACAC--GTGCACACGCCTTCACAGCAAACAT--AC-------------AGGAAC--AC---------AA-GC-GTG---Ag
gi|2 : ATATATTCTTTATTTCCTCCATT---AGCGGAGAGCAACATA-T--AT-------GTTA-----TTACATAAAGAACATATTAAACATGAACATGAG--TA--GC--AAA-AAAACATA--CAAAA--GTTTATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAAAACGCTACACC-CCTGTACTAACACTGGCAGATATACGCAATTACAGACATACATGAATC--AA--GCGTG-------ATGAG---------GTACA--------AG------------CAGAC------------ACGCAAA----------------CAGAC---TGAA---AA--GGAA--A--CATG--CACAT--ATACTAACGCCTTCACAG-ACACATGAAT-------------ATGAAC--AC---------AA-AC-ATG---AAT----ACAT----------AC-ATC-CACAGTTTTAGAGTCAACT---CAATGCTATGTT-TAATCACTAT--CTTGTATAATCTTTTCACCGAATAAA---CAGGGGAAA-AA-C-TGAAAAG---AGTT-----TT-A----ACAATATCTGT---A-AATATTAAATGAAAGTTACATCAGTATGACTATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATCCCGCTCATTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACCCATAGCAAAGATGAGTTATTTGGGATTGCATATCGGTAGATATGAATCGTAGAAA-ACACTCGAATCCAAATGCTGAATGAATATTATTCCAAAGCA--TTTGTCTGTTAGTTTCATTAACCGCACAGTCAAACACTA--A--ATGGAGAGATAGATCATTTGTACTAAGTCCGCACTTATGACACGATTGCCGGTAAGCATGAGAGTAGGTAAAACTTAATATTTTTATAGTGCTCCTACATTTTTCAAGTAAAAGAGGATATTCCTTGCTAAGGGACCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTCTCATCATCGCTCAATCTTAAGTTCAATGATAATTGCTCGAATGTATCTACA-----TATTGTCTTATGATATATTTCCAAACATGTTTTGAAGGAAAGACGCCCGATTCGATAAAACGTTCATAAATGTGAACTAAGTTGTAATGCCTTAATAAGT--TATATATATCAGGAATAAATCAGTTCCAGTCATTCAGTTTGTAAAAGTAAGATATATAAT--GATTTAtt
gi|20 : AAAATCTGAAACAATGGAGCTTCTCATCATCGCTCAATCCTAAGTTCAATAATAATTGTTCGGATTTATATA
gi|21 : TACAGAA----C----A----GTT-ACTAAACATTTTAATTGCAGACCGCTACA---T-TGCACAAACACGCGC--ATACAa
gi|3 : ATA-TCAAT-------GTTA-----TTACATAAA-----------ACATGAATATGAA--CA--GC--AAA-T-CACATA--CACAA--ATAAATGATTATCAA---ATAGAGTAAAGCATAAAAGC----CAATTA----CTG-A----ACGTTCGAATTGCAGA-CACTACAAT-T-T--ATTAACACGCGCAAATACACGCAAT--CAG--ATACCTGAA-CAAAA--GCGTG-------ATAAT---------GTTCA--------AA------------CATAC------------ATACATA----------------CAAAC---TGAC---AA--TCAta
gi|3 : ATAAA---CA----AAA-TA-CATTAAAGG---AGTTATTTCTT-ATTTTATCTTTTCTGT---A-AATATTGAATGAATGTTACATCAGTATGAGTATA-TT--GCCGTTATTATG-------------TAC-----TCATT-GCAGAGT------------AT-TCATT-GTTAGTGACTTAATTCATAAACATATTGTGAAATCAATTTATGACTATTTTC--AGACATAAATCTTGATCTATTTTCAGCTGAAGAATTTCATATAAACAAAAACAAAGATAAGTTATTTAAAATTTCATATCG--------GAA----------------GAATCCACATATTGAGTGAATATTACTCTAAAGCA--CATGTCTGTTCGTTTCATTAACCACACACTCAAAGACCA--A--ATGAATATATTCTCCATATGTACCAGGTCCCGACTTATGACACATGTGTCGGTAAATATAAGGGTAGACATTGCTTGATATGTTTATAGTGCCCCTATATGTCTCGAGTAAATGAGGGCAGTTCTCGCTAAGATATCAAATCTTTGAGCTTTTTCGGAGAAAAACAAAATTAAAACTAAAACGACGGAGATTCTCATCATCGGTAAATCTTAAGCTCAGTAATAATTactgaacgttttgtttattcaataggcaaattgaacaaaataataataatacatgtaataataataataaaaaataaatagtgaaaaaaaaacaatcaaaatttagacatcatagtaaactataacgaaacgaaacataaggcactctggtgaaatctgaatgtatatgatatgataaacaaaatacattaaaggagttatttcttattttatcttttctgtaaatattgaatgaatgttacatcagtatgagtatattgccgttattatgtactcattgcagagtattcattgttagtgacttaattcataaacatattgtgaaatcaatttatgactattttcagacataaatcttgatctattttcagctgaagaatttcatataaacaaaaacaaagataagttatttaaaatttcatatcggaagaatccacatattgagtgaatattactctaaagcacatgtctgttcgtttcattaaccacacactcaaagaccaaatgaatatattctccatatgtaccaggtcccgacttatgacacatgtgtcggtaaatataagggtagacattgcttgatatgtttatagtgcccctatatgtctcgagtaaatgagggcagttctcgctaagatatcaaatctttgagctttttcggagaaaaacaaaattaaaactaaaacgacggagattctcatcatcggtaaatcttaagctcagtaataattttcaaacctgtttcgaaggaaagtcacccgattcaatttattattcatgaatatgaactaagttgttgtgtttctaaatcaaatatataagaaataaatccgcttttattattttggttctcaatacaacgtataagtatttatttcgaaaatt
gi|3 : atatcaatgttattacataaaacatgaatatgaacagcaaatcacatacacaaataaatgattatcaaatagagtaaagcataaaagccaattactgaacgttcgaattgcagacactacaatttattaacacgcgcaaatacacgcaatcagatacctgaacaaaagcgtgataatgttcaaacatacatacatacaaactgacaatcaactgaacgttttgtttattcaataggcaaattgaacaaaataataataatacatgtaataataataataaaaaataaatagtgaaaaaaaaacaatcaaaatttagacatcatagtaaactataacgaaacgaaacataaggcactctggtgaaatctgaatgtatatgatatgTAATA-ATTTTCAAACCTGTTTCGAAGGAAAGTCACCCGATTCAATTTATTATTCATGAATATGAACTAAGTTGTTGTGTTTC--TAAATCAAATATATA--AGAAATAAATCCGCTTTTATTATTTTGGTTCTCAA--TACAACGTATAAG--TATTTAttcaaacctgtttcgaaggaaagtcacccgattcaatttattattcatgaatatgaactaagttgttgtgtttctaaatcaaatatataagaaataaatccgcttttattattttggttctcaatacaacgtataagtatttatttcgaaaatt
gi|4 : atatcaatgttattacataaaacatgaatatgaacagcaaatcacatacacaaataaatgattatcaaatagagtaaagcataaaagccaattactgaacgttcgaattgcagacactacaatttattaacacgcgcaaatacacgcaatcagatacctgaacaaaagcgtgataatgttcaaacatacatacatacaaactgacaatcaactgaacgttttgtttattcaataggcaaattgaacaaaataataataatacatgtaataataataataaaaaataaatagtgaaaaaaaaacaatcaaaatttagacatcatagtaaactataacgaaacgaaacataaggcactctggtgaaatctgaatgtatatgatatgataaacaaaatacattaaaggagttatttcttattttatcttttctgtaaatattgaatgaatgttacatcagtatgagtatattgccgttattatgtactcattgcagagtattcattgttagtgacttaattcataaacatattgtgaaatcaatttatgactattttcagacataaatcttgatctattttcagctgaagaatttcatataaacaaaaacaaagataagttatttaaaatttcatatcggaagaatccacatattgagtgaatattactctaaagcacatgtctgttcgtttcattaaccacacactcaaagaccaaatgaatatattctccatatgtaccaggtcccgacttatgacacatgtgtcggtaaatataagggtagacattgcttgatatgtttatagtgcccctatatgtctcgagtaaatgagggcagttctcgctaagatatcaaatctttgagctttttcggagaaaaacaaaattaaaactaaaacgacggagattctcatcatcggtaaatcttaagctcagATATATTCTTTATTTCCTCCATT---AGCGGAGAGCGACATA-T--AT-------GTTA-----TTACATAAAGAACATATTAAACATGAAAAAAAAAACAAAGC--AAA-AAAACATA--CAAAA--GTATATCAATATTAA---ATAGAATAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAAAACGCTACACC-CCTGTACTAACACTCGCAGATATACGCAATTACAGCCATACATGAATC--AA--GCGTG-------ATGAG---------GTACA--------AG------------CAGAC------------ACGCATA----------------CAGAC---TGAA---AA--GGAA--A--CATG--CACAT--ATACTAACGCCTTCACAG-ACACATGAAT-------------ATATAC--ATCCACAGTTTAA-GC-GCC---AACTCAAAGATTTGTTTAATCACTATA-CAAAAT---AAAGTAAA-TAAACACAGGCATATTATAATGGTTATTTCTTGTACAATCTTTTCACCGAATAAA---AAGGGGGAA-AA-C-TGAAAAT---AGTT-----TT-A----ACCATATCTGT---A-AATATTAAATGAAAGCTACATCAGTATGAATATA-TA--ACACTTAATAAG-------------CAT-----TCACT-GATGA-T------------ATCTCGCTCGTTAGAAGATTAATTCATAAGCATAATGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAGCCCATAGCAAAGATGAGTTATTAGGGATTGCATATCGGTAGATATGAATCGTAGAAA-ACACTCGAATCCAAATACTTAATGAATATTATTCCAAAGAA--TTTGTCTGTTAGTTTCATTAACCGCACAGTCAAACACTA--A--ATGGAGAGATAGATCATTTGTACTAAGTCCACACTTATGACACGTTTGCCGGTAAGCATGAGAGTAGGTAAAACTTAATATTTTTATATTGCTCCTACATTTTTCAAGTAAAAGAGGATATTCCTTTCTAAGAGACCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTCTCATCATCGCTCAATCTTAAGCTCAATGATAATTGCTCGGATGTATCtttcgaaaatt
gi|5 : ATATTCATTATTCCCTCCATT---AGTAGAAGGCGACATA-T--AC-------GTTA-----TTACATAAAGAACATATTAAACATGAACATGAG--TA--GC--AAA-AAT-CATA--CAGAA--ATATATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACACTTGAATTGCAAATCGCTACACCAC-TGCACTAACACTCGCAGATACACGCAATTACAGACATACATGAA-C--AAAAGCGTGATGAGGTATAAGCATACACGCATACAGACTAAAAAG------------CAAAC------------ACGCACATATACTCACTCCTTCACAGACACATGAATATGA--ACAA--AAACATGAATGCAT--ACATTCACAACTTTA--G-A----------------------ATCAAC--CC---------AAAGCTGTG---TTT----AATC----------ACCATA-CAAAAT---AAAATAAAATAAACACAGGCATATTACAATGGTTATTTCTTGTACAATCTTTTCACCGAGTAAA---CAGGGCAAA-AA-C-TAAACAT---AGTT-----TT-A----ACCATGTCTGT---A-AATATTAAATGAAAGTTAAATCAGTATCACTATA-TA--ACACTTAATATGTATTCACTGGTGACATCTCGCTCGCTAGAAGA-TTAATTCATAAGCATCTCGCTCGCTAGAAGATTAATTCATAAGCATACTATGGAATGAAATTACGACTATTTTC--AGACATAAGCATTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACC-ATAGCAAAGATGAGTTATTTGGGATTGTATATCGGTAGATATGAATTGTAGAAA-ACACTCGAATCCAAATACTGAATGAATATTATTCCAAATCA--TTTGTCTGTTaa
gi|6 : -ATA-CAAAAT---AAAGTAAAATAAACACAGGCATATTACGATGGTTATTTCTTGTACAATCTTTTTACCGAGTTAA---CAGGGAAAA-AA-C-TGAAAAG---AGTT-----TT-A----ACCATGTCTGT---A-AATATTAAATGAAAGTTACATCGGTATGAATATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATATCGCTCGTTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTT---AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTTACCAATAGCAAAGATGAGTTATTTGGGATTGCATATCGGTAAATATTAATCGTAGAAA-ACACTCGAATCCAAATACTGAATGAATATTATTCCAAACCATTTTTGTCTGTTAGTTTCATTAACCGCACAATCAAACACTATCATTATGGAGAGATAGTTCATTTGTACAAAGTCCACACTTATGACACGCTTGCCGGTAAGCATACGAGTAGGTAATACTTAATATTTTTgcgtcgtcataccaacaaagactgttagtgtttaaaaata
gi|7 : ccacagttttagcgtcaactaaaagctatgtttaatcattTATATTCTTTATTTCTTCAATA---AAATGATACCAACATA-T--AT-------GTAA-----TTACATAAAGAACATAGTAAACATGAATATGAG--CA--TC---AA-ATCACATA--CAAAA--ATATATCAATATTAA---AAAGAGTAAAGCATACAGGA----CAATTA----CTT-A----ACATTTGAATTGTAGATCGTTACA---T-TGCACTAACAC-------TAAACGTAATT-TGG-------TAAAT-------GC-------------AG-----------ACA--------CG------------CAGAC-----------------TA-------------------AC---TAGC---AA--GCAT--A--CACG--CGCAT--ATATTCACGCATTCACAG-ACACATGGAT-------------ATGAAC--AC---------AA-GC-ATG---ATT----AGGA----------AC-ATA-CATAGTCTAAGAGTATACT---TAAAGCTATAT--------TTATTTAATATACAA-----------AATAAA------GCAAAATAA-T-ACAAAAGAAAAGTT-----TT-A----ACTCTGTCTAT---T-AAAATTAAATGAACGTTACATCAGTATGAGTATA-TT--ACAATTAATATG-------------CAT-----TCACT-GAAGA-T------------ATCTCGCCCGTTAGAAGATTAATTCATAAGCGTATTGTCAAATGAATTTACAACCA
gi|8 : aaatTTATTTCATCCATT---AACTGAGAGCAACTTT-TTCAT-------GTTA-----TTACATAAAGAACATAATAAACATGAATATGAA--CA--AC---TA-ATCCCATA--CAAAG--ATATACCATTATTAA---ATAGAATAAAGCATACACGAAAATT----A----CTT-A----ATA-TTGAAATACAGAGCGCTATA
gi|9 : taattg---CAAAATTATATTACAATGGTTAGTTCTTGTTCCATATTTTCGCTCAGAGAA---CAGAGAAAA-AA----GAAAAACAAAATT-------------ATTATTTCTATTTTATAGTTTTGAATGGAAGTCACAACAGTATGAGTGTATTAGTACCCTTATTATG-------------TAT-----TTATT-tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacatcgagaggctgagaatcaacataaagttttggttaactaatatacaacataaagcgaaataatacaagga
Alignments
lowQualScore : 111 111111111 1111 33333 11 2222 1111111 222222222 1111111111111111111111 222222222222222222222222222222222222 33333333333333333 111111111 333333333333333333 1 222 1 111 11111 2222222222222 11111 222222222222 22222 1 11 11
lowQualScore : 555 0 2 77 9999999 77777 2 555 33 444 555 33 444 0 555 555555555 6666 3 3333 5 55555 5 3 22 5555 55 2 1111111 000000000 9999999999999999999999 999999999999999999999999999999999999 666 999999 55 999 55 666 55 0 55 1 4 4 33333333333333333 0 66 777777777 4 4 888 444444444444444444 0 5 1 000 5 1 0 11 777 4 666 555 11111 4 9999 2 777 4 2 4 66 4444444444444 11111 4 0 5 555555555555 77 4 0 5 77 99999 1 1 1 77777 7 0 0 1 7 2 7 3 88 1 88
lowQualScore : ... . . .. ....... ..... . ... .. ... ... .. ... . ... ......... .... . .... . ..... . . .. .... .. . ....... ......... ...................... .................................... ... ...... .. ... .. ... .. . .. . . . ................. . .. ......... . . ... .................. . . . ... . . . .. ... . ... ... ..... . .... . ... . . . .. ............. ..... . . . ............ .. . . . .. ..... . . . ..... . . . . . . . . .. . ..
lowQualScore : 888 7 9 99 3333333 11111 0 555 99 111 666 99 444 7 444 222222222 5555 1 1111 8 55555 9 3 33 2222 00 0 8888888 999999999 3333333333333333333333 222222222222222222222222222222222222 444 000000 00 555 00 444 00 4 00 6 0 0 66666666666666666 1 11 888888888 4 4 888 000000000000000000 0 0 4 000 7 4 7 22 888 4 222 666 11111 4 4444 7 888 4 7 4 11 4444444444444 11111 4 8 0 666666666666 99 5 1 7 99 33333 0 0 0 55555 3 7 7 0 3 0 3 7 33 0 33
consensus : ATATATTCTTTATTTCCTCCATT---AGCGGAGAGCGACATA-T--AT-------GTTA-----TTACATAAAGAACATANTAAACATGAATATGAG--CA--GC--AAA-ANCACATA--CAAAA--GTATATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAGAGCGCTACACC-C-TGCACTAACACGCGCAGATACACGCAATTACAGACATACATGAATC--AA--GCGTG-------ATGAG---------GTACA--------AG------------CAGAC------------ACGCATA----------------CAGAC---TGAA---AA--GCAN--A--C---ACG--CGCAT--ATACTCACGCCTTC-ACAG-ACACATG-AT-------------ATGAAC--AC---------AA-GC-GTG---AAT----AAAT----------AC-ATACAA-AAT---AA-AGTAAACTAAACACAGGCATATTACAATGGTTATTTCTTGTACAATCTTTTCACCGAATAAA---CAGGGAAAA-AA-C-TGAAAAG---AGTT-----TT-A----ACCATGTCTGT---A-AATATTAAATGAAAGTTACATCAGTATGAGTATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATCTCGCTCGTTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACCCATAGCAAAGATGAGTTATTTGGGATTGCATATCGGTAGATATGAATCGTAGAAA-ACACTCGAATCCAAATACTGAATGAATATTATTCCAAAGCA--TTTGTCTGTTAGTTTCATTAACCGCACAGTCAAACACTA--A--ATGGAGAGATAGNTCATTTGTACTAAGTCCGCACTTATGACACGTTTGCCGGTAAGCATGNGAGTAGGTAANACTTAATATTTTTATAGTGCTCCTACATTTTTCAAGTAAAAGAGGATATTCCTTGCTAAGGGACCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTCTCATCATCGCTCAATCTTAAGCTCAATGATAATTGCTCGGATGTATCTACATAATTTATTGTCTTATGATATATTTCCAAACATGTTTCGAAGGAAAGACGCCCGATTCGATAAANCGTTCATAAATGTGAACTAAGTTGTAATGTCTTAATAAGTCATATATATATCAGGAATAAATCCGCTTTTATTATTCGGGTTGTCAA--TANAACGTATAAG--TATTTA
Reference ( family-6539 ) : ATATATTCTTTATTTCCTCCATT---AGCGGAGAGCGACATA-T--AT-------GTTA-----TTACATAAAGAACATANTAAACATGAATATGAG--CA--GC--AAA-ANCACATA--CAAAA--GTATATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAGAGCGCTACACC-C-TGCACTAACACGCGCAGATACACGCAATTACAGACATACATGAATC--AA--GCGTG-------ATGAG---------GTACA--------AG------------CAGAC------------ACGCATA----------------CAGAC---TGAA---AA--GCAN--A--C---ACG--CGCAT--ATACTCACGCCTTC-ACAG-ACACATGNAT-------------ATGAAC--AC---------AA-GC-GTG---AAT----ANAT----------AC-ATACAA-AGT---AA-AGTAAACTAAACACAGGCATATTACAATGGTTATTTCTTGTACAATCTTTTCACCGAATAAA---CAGGGAAAA-AA-C-TGAAAAG---AGTT-----TT-A----ACCATGTCTGT---A-AATATTAAATGAAAGTTACATCAGTATGAGTATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATCTCGCTCGTTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACCCATAGCAAAGATGAGTTATTTGGGATTGCATATCGGTAGATATGAATCGTAGAAA-ACACTCGAATCCAAATACTGAATGAATATTATTCCAAAGCA--TTTGTCTGTTAGTTTCATTAACCGCACAGTCAAACACTA--A--ATGGAGAGATAGNTCATTTGTACTAAGTCCGCACTTATGACACGTTTGCCGGTAAGCATGNGAGTAGGTAANACTTAATATTTTTATAGTGCTCCTACATTTTTCAAGTAAAAGAGGATATTCCTTGCTAAGGGACCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTCTCATCATCGCTCAATCTTAAGCTCAATGATAATTGCTCGGATGTATCTACATAATTTATTGTCTTATGATATATTTCCAAACATGTTTCGAAGGAAAGACGCCCGATTCGATAAANCGTTCATAAATGTGAACTAAGTTGTAATGTCTTAATAAGTCATATATATATCAGGAATAAATCCGCTTTTATTATTCGGGTTGTCAA--TANAACGTATAAG--TATTTA
gi|1 : TATATTCTTTATTTCCTCCATT---AGCGGAGAGAGACATA-T--AT-------GTTA-----TTACATAAAGAACATAATAAATATGAACATGAA--TA--GC--AAA-AAAACACA--CAAAA--GTATATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAAAACGCTACACC-CCTGCACTAACACTCGCAGCTATACGCAACTACAGACATACATGAATC--AA--TCGTG-------ATGAG---------GTATA--------AGCAGACACGCATACAGACTGAAAAGGAAACATGCATA----------------TATAC---T--A---AC--GCCTTCA--C---AGA--CACATGAATACGAACACAATC-ATGA-ATACATACATCCACAGTTTTAGCATCAACTCAA---------AA-AT-GTGTTTAAT----CAAT----------A---TACAA-AAC---AA-AGTAAA-TAAACACAGGCATGTTATAATGGTTATTTCTTGTACAATCTTTTCACCGAAAAAAAAACAGGGAAAA-AAAC-TGAAAAG---AGTT-----TT-A----ACCATATCTGT---A-AATATTAAATGAGAGTTACATCAGTATGAATATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATCTCGCTCGTTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTTTTTAGACATAAGTCTTGCTCGGTTTTCATCTGAAGTGTTTTGTTTAACCTATAGCAAAGATGAGTTATTTGGGATTGAATATCCGTAGATATGAATCATAAAAATACACTCGAATCAAAATACTGAATGAATATTATTCCAATGCA--TTTGTCAGTTAGTTTCATTAACCGCATAGCCAAACACTA--A--ATGGAGAGATAGATCATTTGTACTAAGTCCGCATTTATGACACGTTTGCAGGTAAGCATGTGAGTAGGTAAAACTTAATATTTTTACAGTGCTCCTACATTTTTCAATTAAAAGAGGATATTCCTTGCTAAGGGTCCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTGTCATCATCGCTCAATCTTAAGCTCAATGATAATTGCTCGGATGTATCTACATAATTTATTGTCTTATGATATATTTCCAAACATGTTTTGAAGGAAAGACACACGATTCGATAAAGCGTTCATAAATGTGAACTAAGTTGTAATGTCTTAATAAGTTATATATGTATCAGGAATAAACCCTCTTTTATTATACGGGTTGTCAT--TATAACGTATAAGTCTATTTA
gi|10 : ATATTATAATGGTTATTTCTTGTACAATCTTTTCACCGAATGAA---CAGGGAAAA-AA-C-TGAAAAG---AGTT-----TTGA----ACCATATCTGT---A-AATATCAAATGAAAGTTACATCAGTATAGATATA-TA--ACACTTAATATG-------------CGT-----TTACT-GATGA-T------------ATCTCGCTCGTTTGAAGATCAACTCATGAGCATATTGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACCCATAGCAAAGATAATTTATTAGGGGTTGCATAACGGTAGATATGAATCGTAaaagta
gi|11 : TATATTCTTTCTTTCCTCAATT---AACGGAGGGCAACATA-T--TT-------GTTA-----TGACATAAAGAACATATTAAATACGAACATGAG--CA--GC--AAATAACACACA--CCAA----TATATCAATATTAA---ATAGAGTAAAAGGGACAGGA----C----A----CTT-T----ACATTTGAATTGCAAAGCGCTACA---T-TGCACTAACATTCGCAGATACACG--------------CATGAA-CAAAA--GCGTG-------ATGAG---------GTACA--------AG------------CAGAC------------ACATATA----------------CAGAC---TAGA---AA--GCAT--A--C---ACG--CGCAT--ATACCCGCGCATTC-ACAG-ACACATGGAT-------------ATCAAC--AC---------AA-GC-AT
gi|12 : ACATTCTTTATTTCTTCCGGT---AACTAAGAGTAACATG-T--ATTTTTTATGTTA-----TTATTGAAAGATCACAGTAAACATGAATATGAA--CA--GC---AA-ATCAC--------------GTATCACTATTAA---ATAGAGTAAAACAAACAGGA----C----AATTTCTTAA----ACATTTGAATTGCAGAGCACTACA---T-TGCACTAGCATGCGCAGATACAGTTAATTACAGA-------AAACC--AT--CCATG--------TAAG---------GCACA--------AG------------CAAAC------------ACGCGCT----------------CATAC---TCAC---ACCTTCAC--A--C---ACG--CGCTT--ATACTCACGCCTTC-ACAC-AC
gi|13 : ATA-T--AT-------ATTACATAATTATATAAAGAGCATTATAAACAAGAATATGAA--CA--GC---AA-ATCAGAAA--CAAAA--G-ATGTCATTATTAA---ATAGAGCAAAG----GAGAAT---T----A----CTT-A----ACATTTGAATTTCAGAACGCTATA---A-TGCACGAACACGCACAGATACCGGCAAATTCAGTTGTACGT-AATT--AG--GC-TA-------A-AAA---------ATACA--------GG------------CAGAC------------A--TATA-----------------AG--------A---AA--CTAT--A--T---ATG--TGCAT--TTAGTCACCATTTT-TCTA-CCACATATAC-------------ATGAAC--AT---------AA-TC-GCG---AAT----AAGT----------AC-ATACAG-Ag
gi|14 : TTTTCTCCATT---AGCGGAGAGCGACATA-T--AT-------GTTA-----TTACATAAAGAACATATTAAACATGAATATGAG--TA--GC--AAA-A-CAAATATTCAAAA--GTATATTAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----GTT-T----ACATTTGAATTGCAAAGTGCTACACCAC-TGCACTAACACGCACAGATACACGCAATTACAGACATATATGAA-CAAAA--GCGTG-------ATGAT---------GTACA--------AG------------CAGTC------------ACCCATA----------------CAGAC---TAAA---AT--GCAA--A--C---AC---TGTAT--ACAC
gi|15 : tattTTAAACCAAAACAAAGATGAGTTAATTGGGATT---------T-GATAC---TTTTAGAAA-ACACTTGAATCCAAATATTGAGCGTATAGTGCTCCAAAGCA--TTTGCCTGTTTGTTTCATTTACCACACAATCAAAGGCTT--A--ATGAAGAAATAGTTCA-TTGTACTTAGTCTGCACTTATGCCACATTTGGCTGTAATCATACAAGTAGACATTGTATAATATTTTCATAGTGCT
gi|16 : aaTATGTCCTCTAGT---AGCGCAGTGCAGCATA-T--TT-------GTTA-----TTACATTAAGAATATAATAGATATTAATATAAG--CG--GC---AA-ACCACATG--CATAA--GGATATC---GTGAAAACATACACTGAAACGTACAGGA----C----A----ATT-ACTGTACATTTGACTTACAGAtg
gi|17 : TATATTCTTTATTACCT---TTCAAATCGGAGAGCAACATC-A--AT-------GTTA-----TCACAC--AGAAAATAGTAAACATGAATATGA---CA--TC--AAA---CACATA--CAAAAATATATATCAATGATAT---AAAGAGCAATGCAT
gi|18 : attTATTATTTGTTTC-TGCAGT---ACCAGGGAGCAGCATACT--TT-------CATA-----TTACATAAAGAACATAGT--ACATGAATGTGAA--CA--GCCGCAA-ATTACATG--CAAGA--AGATA
gi|19 : catgtacA--GCATG-------ACGACTAT------GTACA--------AA------------CAGAC------------GAAGAGA----------------AAGAC---TGGC---AA--ACAA--A--C---ACG--CACAC--GTGCACACGCCTTC-ACAGCAAACAT--AC-------------AGGAAC--AC---------AA-GC-GTG---Ag
gi|2 : ATATATTCTTTATTTCCTCCATT---AGCGGAGAGCAACATA-T--AT-------GTTA-----TTACATAAAGAACATATTAAACATGAACATGAG--TA--GC--AAA-AAAACATA--CAAAA--GTTTATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAAAACGCTACACC-CCTGTACTAACACTGGCAGATATACGCAATTACAGACATACATGAATC--AA--GCGTG-------ATGAG---------GTACA--------AG------------CAGAC------------ACGCAAA----------------CAGAC---TGAA---AA--GGAA--A--C---ATG--CACAT--ATACTAACGCCTTC-ACAG-ACACATGAAT-------------ATGAAC--AC---------AA-AC-ATG---AAT----ACAT----------AC-ATCCAC-AGTTTTAG-AGTCAACTCAATGC---TATGTT-TAATCACTAT--CTTGTATAATCTTTTCACCGAATAAA---CAGGGGAAA-AA-C-TGAAAAG---AGTT-----TT-A----ACAATATCTGT---A-AATATTAAATGAAAGTTACATCAGTATGACTATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATCCCGCTCATTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACCCATAGCAAAGATGAGTTATTTGGGATTGCATATCGGTAGATATGAATCGTAGAAA-ACACTCGAATCCAAATGCTGAATGAATATTATTCCAAAGCA--TTTGTCTGTTAGTTTCATTAACCGCACAGTCAAACACTA--A--ATGGAGAGATAGATCATTTGTACTAAGTCCGCACTTATGACACGATTGCCGGTAAGCATGAGAGTAGGTAAAACTTAATATTTTTATAGTGCTCCTACATTTTTCAAGTAAAAGAGGATATTCCTTGCTAAGGGACCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTCTCATCATCGCTCAATCTTAAGTTCAATGATAATTGCTCGAATGTATCTACA-----TATTGTCTTATGATATATTTCCAAACATGTTTTGAAGGAAAGACGCCCGATTCGATAAAACGTTCATAAATGTGAACTAAGTTGTAATGCCTTAATAAGT--TATATATATCAGGAATAAATCAGTTCCAGTCATTCAGTTTGTAAAAGTAAGATATATAAT--GATTTAtt
gi|20 : AAAATCTGAAACAATGGAGCTTCTCATCATCGCTCAATCCTAAGTTCAATAATAATTGTTCGGATTTATATA
gi|21 : TACAGAA----C----A----GTT-ACTAAACATTTTAATTGCAGACCGCTACA---T-TGCACAAACACGCGC--ATACAa
gi|3 : ATA-TCAAT-------GTTA-----TTACATAAA-----------ACATGAATATGAA--CA--GC--AAA--TCACATA--CACAA--ATAAATGATTATCAA---ATAGAGTAAAGCATAAAAGC----CAATTA----CTG-A----ACGTTCGAATTGCAGA-CACTACAAT-T-T--ATTAACACGCGCAAATACACGCAAT--CAG--ATACCTGAA-CAAAA--GCGTG-------ATAAT---------GTTCA--------AA------------CATAC------------ATACATA----------------CAAAC---TGAC---AA--TCA---A--CTGAACG--T---T--TTGTTTA----TTCAATAG-GCAAAT------------------TGAAC--AA---------AA-TA-AT----AAT----A-AT----------AC-ATGTAATAAT---AATAATAAAta
gi|3 : ATAAA---CA----AAA-TA-CATTAAAGG---AGTTATTTCTT-ATTTTATCTTTTCTGT---A-AATATTGAATGAATGTTACATCAGTATGAGTATA-TT--GCCGTTATTATG-------------TAC-----TCATT-GCAGAGT------------AT-TCATT-GTTAGTGACTTAATTCATAAACATATTGTGAAATCAATTTATGACTATTTTC--AGACATAAATCTTGATCTATTTTCAGCTGAAGAATTTCATATAAACAAAAACAAAGATAAGTTATTTAAAATTTCATATCG--------GAA----------------GAATCCACATATTGAGTGAATATTACTCTAAAGCA--CATGTCTGTTCGTTTCATTAACCACACACTCAAAGACCA--A--ATGAATATATTCTCCATATGTACCAGGTCCCGACTTATGACACATGTGTCGGTAAATATAAGGGTAGACATTGCTTGATATGTTTATAGTGCCCCTATATGTCTCGAGTAAATGAGGGCAGTTCTCGCTAAGATATCAAATCTTTGAGCTTTTTCGGAGAAAAACAAAATTAAAACTAAAACGACGGAGATTCTCATCATCGGTAAATCTTAAGCTCAGTAATAATTaaataaatagtgaaaaaaaaacaatcaaaatttagacatcatagtaaactataacgaaacgaaacataaggcactctggtgaaatctgaatgtatatgatatgataaacaaaatacattaaaggagttatttcttattttatcttttctgtaaatattgaatgaatgttacatcagtatgagtatattgccgttattatgtactcattgcagagtattcattgttagtgacttaattcataaacatattgtgaaatcaatttatgactattttcagacataaatcttgatctattttcagctgaagaatttcatataaacaaaaacaaagataagttatttaaaatttcatatcggaagaatccacatattgagtgaatattactctaaagcacatgtctgttcgtttcattaaccacacactcaaagaccaaatgaatatattctccatatgtaccaggtcccgacttatgacacatgtgtcggtaaatataagggtagacattgcttgatatgtttatagtgcccctatatgtctcgagtaaatgagggcagttctcgctaagatatcaaatctttgagctttttcggagaaaaacaaaattaaaactaaaacgacggagattctcatcatcggtaaatcttaagctcagtaataattttcaaacctgtttcgaaggaaagtcacccgattcaatttattattcatgaatatgaactaagttgttgtgtttctaaatcaaatatataagaaataaatccgcttttattattttggttctcaatacaacgtataagtatttatttcgaaaatt
gi|3 : atatcaatgttattacataaaacatgaatatgaacagcaaatcacatacacaaataaatgattatcaaatagagtaaagcataaaagccaattactgaacgttcgaattgcagacactacaatttattaacacgcgcaaatacacgcaatcagatacctgaacaaaagcgtgataatgttcaaacatacatacatacaaactgacaatcaactgaacgttttgtttattcaataggcaaattgaacaaaataataataatacatgtaataataataataaaaaataaatagtgaaaaaaaaacaatcaaaatttagacatcatagtaaactataacgaaacgaaacataaggcactctggtgaaatctgaatgtatatgatatgTAATA-ATTTTCAAACCTGTTTCGAAGGAAAGTCACCCGATTCAATTTATTATTCATGAATATGAACTAAGTTGTTGTGTTTC--TAAATCAAATATATA--AGAAATAAATCCGCTTTTATTATTTTGGTTCTCAA--TACAACGTATAAG--TATTTAttcaaacctgtttcgaaggaaagtcacccgattcaatttattattcatgaatatgaactaagttgttgtgtttctaaatcaaatatataagaaataaatccgcttttattattttggttctcaatacaacgtataagtatttatttcgaaaatt
gi|4 : atatcaatgttattacataaaacatgaatatgaacagcaaatcacatacacaaataaatgattatcaaatagagtaaagcataaaagccaattactgaacgttcgaattgcagacactacaatttattaacacgcgcaaatacacgcaatcagatacctgaacaaaagcgtgataatgttcaaacatacatacatacaaactgacaatcaactgaacgttttgtttattcaataggcaaattgaacaaaataataataatacatgtaataataataataaaaaataaatagtgaaaaaaaaacaatcaaaatttagacatcatagtaaactataacgaaacgaaacataaggcactctggtgaaatctgaatgtatatgatatgataaacaaaatacattaaaggagttatttcttattttatcttttctgtaaatattgaatgaatgttacatcagtatgagtatattgccgttattatgtactcattgcagagtattcattgttagtgacttaattcataaacatattgtgaaatcaatttatgactattttcagacataaatcttgatctattttcagctgaagaatttcatataaacaaaaacaaagataagttatttaaaatttcatatcggaagaatccacatattgagtgaatattactctaaagcacatgtctgttcgtttcattaaccacacactcaaagaccaaatgaatatattctccatatgtaccaggtcccgacttatgacacatgtgtcggtaaatataagggtagacattgcttgatatgtttatagtgcccctatatgtctcgagtaaatgagggcagttctcgctaagatatcaaatctttgagctttttcggagaaaaacaaaattaaaactaaaacgacggagattctcatcatcggtaaatcttaagctcagATATATTCTTTATTTCCTCCATT---AGCGGAGAGCGACATA-T--AT-------GTTA-----TTACATAAAGAACATATTAAACATGAAAAAAAAAACAAAGC--AAA-AAAACATA--CAAAA--GTATATCAATATTAA---ATAGAATAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAAAACGCTACACC-CCTGTACTAACACTCGCAGATATACGCAATTACAGCCATACATGAATC--AA--GCGTG-------ATGAG---------GTACA--------AG------------CAGAC------------ACGCATA----------------CAGAC---TGAA---AA--GGAA--A--C---ATG--CACAT--ATACTAACGCCTTC-ACAG-ACACATGAAT-------------ATATAC--ATCCACAGTTTAA-GC-GCC---AACTCAAAGATTTGTTTAATCACTATACAA-AAT---AA-AGTAAA-TAAACACAGGCATATTATAATGGTTATTTCTTGTACAATCTTTTCACCGAATAAA---AAGGGGGAA-AA-C-TGAAAAT---AGTT-----TT-A----ACCATATCTGT---A-AATATTAAATGAAAGCTACATCAGTATGAATATA-TA--ACACTTAATAAG-------------CAT-----TCACT-GATGA-T------------ATCTCGCTCGTTAGAAGATTAATTCATAAGCATAATGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAGCCCATAGCAAAGATGAGTTATTAGGGATTGCATATCGGTAGATATGAATCGTAGAAA-ACACTCGAATCCAAATACTTAATGAATATTATTCCAAAGAA--TTTGTCTGTTAGTTTCATTAACCGCACAGTCAAACACTA--A--ATGGAGAGATAGATCATTTGTACTAAGTCCACACTTATGACACGTTTGCCGGTAAGCATGAGAGTAGGTAAAACTTAATATTTTTATATTGCTCCTACATTTTTCAAGTAAAAGAGGATATTCCTTTCTAAGAGACCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTCTCATCATCGCTCAATCTTAAGCTCAATGATAATTGCTCGGATGTATCtttcgaaaatt
gi|5 : ATATTCATTATTCCCTCCATT---AGTAGAAGGCGACATA-T--AC-------GTTA-----TTACATAAAGAACATATTAAACATGAACATGAG--TA--GC--AAA-AAT-CATA--CAGAA--ATATATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACACTTGAATTGCAAATCGCTACACCAC-TGCACTAACACTCGCAGATACACGCAATTACAGACATACATGAA-C--AAAAGCGTGATGAGGTATAAGCATACACGCATACAGACTAAAAAG------------CAAAC------------ACGCACATATACTCACTCCTTCACAGACACATGAATATGA--ACAA--AAAC---ATGAATGCAT--ACATTCACAACTTT-A--G-A----------------------ATCAAC--CC---------AAAGCTGTG---TTT----AATC----------ACCATACAA-AAT---AA-AATAAAATAAACACAGGCATATTACAATGGTTATTTCTTGTACAATCTTTTCACCGAGTAAA---CAGGGCAAA-AA-C-TAAACAT---AGTT-----TT-A----ACCATGTCTGT---A-AATATTAAATGAAAGTTAAATCAGTATCACTATA-TA--ACACTTAATATGTATTCACTGGTGACATCTCGCTCGCTAGAAGA-TTAATTCATAAGCATCTCGCTCGCTAGAAGATTAATTCATAAGCATACTATGGAATGAAATTACGACTATTTTC--AGACATAAGCATTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACC-ATAGCAAAGATGAGTTATTTGGGATTGTATATCGGTAGATATGAATTGTAGAAA-ACACTCGAATCCAAATACTGAATGAATATTATTCCAAATCA--TTTGTCTGTTaa
gi|6 : -ATACAA-AAT---AA-AGTAAAATAAACACAGGCATATTACGATGGTTATTTCTTGTACAATCTTTTTACCGAGTTAA---CAGGGAAAA-AA-C-TGAAAAG---AGTT-----TT-A----ACCATGTCTGT---A-AATATTAAATGAAAGTTACATCGGTATGAATATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATATCGCTCGTTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTT---AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTTACCAATAGCAAAGATGAGTTATTTGGGATTGCATATCGGTAAATATTAATCGTAGAAA-ACACTCGAATCCAAATACTGAATGAATATTATTCCAAACCATTTTTGTCTGTTAGTTTCATTAACCGCACAATCAAACACTATCATTATGGAGAGATAGTTCATTTGTACAAAGTCCACACTTATGACACGCTTGCCGGTAAGCATACGAGTAGGTAATACTTAATATTTTTgcgtcgtcataccaacaaagactgttagtgtttaaaaata
gi|7 : ccacagttttagcgtcaactaaaagctatgtttaatcattTATATTCTTTATTTCTTCAATA---AAATGATACCAACATA-T--AT-------GTAA-----TTACATAAAGAACATAGTAAACATGAATATGAG--CA--TC---AA-ATCACATA--CAAAA--ATATATCAATATTAA---AAAGAGTAAAGCATACAGGA----CAATTA----CTT-A----ACATTTGAATTGTAGATCGTTACA---T-TGCACTAACAC-------TAAACGTAATT-TGG-------TAAAT-------GC-------------AG-----------ACA--------CG------------CAGAC-----------------TA-------------------AC---TAGC---AA--GCAT--A--C---ACG--CGCAT--ATATTCACGCATTC-ACAG-ACACATGGAT-------------ATGAAC--AC---------AA-GC-ATG---ATT----AGGA----------AC-ATACAT-AGTCTAAG-AGTATACTTAA---AGCTATAT--------TTATTTAATATACAA-----------AATAAA------GCAAAATAA-T-ACAAAAGAAAAGTT-----TT-A----ACTCTGTCTAT---T-AAAATTAAATGAACGTTACATCAGTATGAGTATA-TT--ACAATTAATATG-------------CAT-----TCACT-GAAGA-T------------ATCTCGCCCGTTAGAAGATTAATTCATAAGCGTATTGTCAAATGAATTTACAACCA
gi|8 : aaatTTATTTCATCCATT---AACTGAGAGCAACTTT-TTCAT-------GTTA-----TTACATAAAGAACATAATAAACATGAATATGAA--CA--AC---TA-ATCCCATA--CAAAG--ATATACCATTATTAA---ATAGAATAAAGCATACACGAAAATT----A----CTT-A----ATA-TTGAAATACAGAGCGCTATA
gi|9 : taattgAGCCAAACAAAATTATATTACAATGGTTAGTTCTTGTTCCATATTTTCGCTCAGAGAA---CAGAGAAAA-AA----GAAAAACAAAATT-------------ATTATTTCTATTTTATAGTTTTGAATGGAAGTCACAACAGTATGAGTGTATTAGTACCCTTATTATG-------------TAT-----TTATT-tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacatcgagaggctgagaatcaacataaagttttggttaactaatatacaacataaagcgaaataatacaagga
Alignments
lowQualScore : 111 111111111 1111 33333 11 2222 1111111 222222222 1111111111111111111111 222222222222222222222222222222222222 1111111111 22222222222 111111111 3333333333333333333 1 222 1 111 11111 2222222222222 11111 222222222222 22222 1 11 11
lowQualScore : 555 0 2 77 9999999 77777 2 555 33 444 555 33 444 0 555 555555555 6666 3 3333 5 55555 5 3 22 5555 55 2 1111111 000000000 9999999999999999999999 999999999999999999999999999999999999 666 999999 1111111111 4 55 666 55 7777 55 1 4 6666 99999999999 0 66 777777777 66 4 5555555555555555555 77 2 0 5 000 5 1 0 11 777 4 666 555 11111 4 9999 2 777 4 2 4 66 4444444444444 11111 4 0 5 555555555555 77 4 0 5 77 99999 1 1 1 77777 7 0 0 1 7 2 7 3 88 1 88
lowQualScore : ... . . .. ....... ..... . ... .. ... ... .. ... . ... ......... .... . .... . ..... . . .. .... .. . ....... ......... ...................... .................................... ... ...... .......... . .. ... .. .... .. . . .... ........... . .. ......... .. . ................... .. . . . ... . . . .. ... . ... ... ..... . .... . ... . . . .. ............. ..... . . . ............ .. . . . .. ..... . . . ..... . . . . . . . . .. . ..
lowQualScore : 888 7 9 99 3333333 11111 0 555 99 111 666 99 444 7 444 222222222 5555 1 1111 8 55555 9 3 33 2222 00 0 8888888 999999999 3333333333333333333333 222222222222222222222222222222222222 444 000000 2222222222 5 00 444 00 7777 00 6 0 8888 44444444444 1 11 888888888 33 4 0000000000000000000 99 7 0 0 000 7 4 7 22 888 4 222 666 11111 4 4444 7 888 4 7 4 11 4444444444444 11111 4 8 0 666666666666 99 5 1 7 99 33333 0 0 0 55555 3 7 7 0 3 0 3 7 33 0 33
consensus : ATATATTCTTTATTTCCTCCATT---AGCGGAGAGCGACATA-T--AT-------GTTA-----TTACATAAAGAACATANTAAACATGAATATGAG--CA--GC--AAA-ANCACATA--CAAAA--GTATATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAGAGCGCTACACC-C-TGCACTAACACGCGCAGATACACGCAATTACAGACATACATGAATC--AA--GCGTG-------ATGAG---------GTACA--------AG------------CAGAC------------ACGCATA----------------CAGAC---TGAA---AA--GC------ANA--C---ACG--CGCATAT----AC--TCACGCCTTC-ACAG-A--CACA----T-G-A-CATGAAC--AC---------AA-GC-GTG---AA--------------TA--ANTAC-ATACAA-AAT---AA-AGTAAACTAAACACAGGCATATTACAATGGTTATTTCTTGTACAATCTTTTCACCGAATAAA---CAGGGAAAA-AA-C-TGAAAAG---AGTT-----TT-A----ACCATGTCTGT---A-AATATTAAATGAAAGTTACATCAGTATGAGTATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATCTCGCTCGTTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACCCATAGCAAAGATGAGTTATTTGGGATTGCATATCGGTAGATATGAATCGTAGAAA-ACACTCGAATCCAAATACTGAATGAATATTATTCCAAAGCA--TTTGTCTGTTAGTTTCATTAACCGCACAGTCAAACACTA--A--ATGGAGAGATAGNTCATTTGTACTAAGTCCGCACTTATGACACGTTTGCCGGTAAGCATGNGAGTAGGTAANACTTAATATTTTTATAGTGCTCCTACATTTTTCAAGTAAAAGAGGATATTCCTTGCTAAGGGACCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTCTCATCATCGCTCAATCTTAAGCTCAATGATAATTGCTCGGATGTATCTACATAATTTATTGTCTTATGATATATTTCCAAACATGTTTCGAAGGAAAGACGCCCGATTCGATAAANCGTTCATAAATGTGAACTAAGTTGTAATGTCTTAATAAGTCATATATATATCAGGAATAAATCCGCTTTTATTATTCGGGTTGTCAA--TANAACGTATAAG--TATTTA
Reference ( family-6539 ) : ATATATTCTTTATTTCCTCCATT---AGCGGAGAGCGACATA-T--AT-------GTTA-----TTACATAAAGAACATANTAAACATGAATATGAG--CA--GC--AAA-ANCACATA--CAAAA--GTATATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAGAGCGCTACACC-C-TGCACTAACACGCGCAGATACACGCAATTACAGACATACATGAATC--AA--GCGTG-------ATGAG---------GTACA--------AG------------CAGAC------------ACGCATA----------------CAGAC---TGAA---AA--GC------ANA--C---ACG--CGCATAT----AC--TCACGCCTTC-ACAG-A--CACA----T-G-A-TATGAAC--AC---------AA-GC-GTG---AA--------------TA--AATAC-ATACAA-AAT---AA-AGTAAACTAAACACAGGCATATTACAATGGTTATTTCTTGTACAATCTTTTCACCGAATAAA---CAGGGAAAA-AA-C-TGAAAAG---AGTT-----TT-A----ACCATGTCTGT---A-AATATTAAATGAAAGTTACATCAGTATGAGTATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATCTCGCTCGTTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACCCATAGCAAAGATGAGTTATTTGGGATTGCATATCGGTAGATATGAATCGTAGAAA-ACACTCGAATCCAAATACTGAATGAATATTATTCCAAAGCA--TTTGTCTGTTAGTTTCATTAACCGCACAGTCAAACACTA--A--ATGGAGAGATAGNTCATTTGTACTAAGTCCGCACTTATGACACGTTTGCCGGTAAGCATGNGAGTAGGTAANACTTAATATTTTTATAGTGCTCCTACATTTTTCAAGTAAAAGAGGATATTCCTTGCTAAGGGACCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTCTCATCATCGCTCAATCTTAAGCTCAATGATAATTGCTCGGATGTATCTACATAATTTATTGTCTTATGATATATTTCCAAACATGTTTCGAAGGAAAGACGCCCGATTCGATAAANCGTTCATAAATGTGAACTAAGTTGTAATGTCTTAATAAGTCATATATATATCAGGAATAAATCCGCTTTTATTATTCGGGTTGTCAA--TANAACGTATAAG--TATTTA
gi|1 : TATATTCTTTATTTCCTCCATT---AGCGGAGAGAGACATA-T--AT-------GTTA-----TTACATAAAGAACATAATAAATATGAACATGAA--TA--GC--AAA-AAAACACA--CAAAA--GTATATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAAAACGCTACACC-CCTGCACTAACACTCGCAGCTATACGCAACTACAGACATACATGAATC--AA--TCGTG-------ATGAG---------GTATA--------AGCAGACACGCATACAGACTGAAAAGGAAACATGCATA----------------TATAC---T--A---AC--GCCTTCACAGA--C---ACA--TGAATACGAACACAATCATGAATAC-ATAC-ATCCACAGTTTT-A-G-CATCAACTCAA---------AA-AT-GTGTTTAA--------------TC--AATA---TACAA-AAC---AA-AGTAAA-TAAACACAGGCATGTTATAATGGTTATTTCTTGTACAATCTTTTCACCGAAAAAAAAACAGGGAAAA-AAAC-TGAAAAG---AGTT-----TT-A----ACCATATCTGT---A-AATATTAAATGAGAGTTACATCAGTATGAATATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATCTCGCTCGTTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTTTTTAGACATAAGTCTTGCTCGGTTTTCATCTGAAGTGTTTTGTTTAACCTATAGCAAAGATGAGTTATTTGGGATTGAATATCCGTAGATATGAATCATAAAAATACACTCGAATCAAAATACTGAATGAATATTATTCCAATGCA--TTTGTCAGTTAGTTTCATTAACCGCATAGCCAAACACTA--A--ATGGAGAGATAGATCATTTGTACTAAGTCCGCATTTATGACACGTTTGCAGGTAAGCATGTGAGTAGGTAAAACTTAATATTTTTACAGTGCTCCTACATTTTTCAATTAAAAGAGGATATTCCTTGCTAAGGGTCCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTGTCATCATCGCTCAATCTTAAGCTCAATGATAATTGCTCGGATGTATCTACATAATTTATTGTCTTATGATATATTTCCAAACATGTTTTGAAGGAAAGACACACGATTCGATAAAGCGTTCATAAATGTGAACTAAGTTGTAATGTCTTAATAAGTTATATATGTATCAGGAATAAACCCTCTTTTATTATACGGGTTGTCAT--TATAACGTATAAGTCTATTTA
gi|10 : ATATTATAATGGTTATTTCTTGTACAATCTTTTCACCGAATGAA---CAGGGAAAA-AA-C-TGAAAAG---AGTT-----TTGA----ACCATATCTGT---A-AATATCAAATGAAAGTTACATCAGTATAGATATA-TA--ACACTTAATATG-------------CGT-----TTACT-GATGA-T------------ATCTCGCTCGTTTGAAGATCAACTCATGAGCATATTGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACCCATAGCAAAGATAATTTATTAGGGGTTGCATAACGGTAGATATGAATCGTAaaagta
gi|11 : TATATTCTTTCTTTCCTCAATT---AACGGAGGGCAACATA-T--TT-------GTTA-----TGACATAAAGAACATATTAAATACGAACATGAG--CA--GC--AAATAACACACA--CCAA----TATATCAATATTAA---ATAGAGTAAAAGGGACAGGA----C----A----CTT-T----ACATTTGAATTGCAAAGCGCTACA---T-TGCACTAACATTCGCAGATACACG--------------CATGAA-CAAAA--GCGTG-------ATGAG---------GTACA--------AG------------CAGAC------------ACATATA----------------CAGAC---TAGA---AA--GC------ATA--C---ACG--CGCATAT----AC--CCGCGCATTC-ACAG-A--CACA----TGG-A-TATCAAC--AC---------AA-GC-AT
gi|12 : ACATTCTTTATTTCTTCCGGT---AACTAAGAGTAACATG-T--ATTTTTTATGTTA-----TTATTGAAAGATCACAGTAAACATGAATATGAA--CA--GC---AA-ATCAC--------------GTATCACTATTAA---ATAGAGTAAAACAAACAGGA----C----AATTTCTTAA----ACATTTGAATTGCAGAGCACTACA---T-TGCACTAGCATGCGCAGATACAGTTAATTACAGA-------AAACC--AT--CCATG--------TAAG---------GCACA--------AG------------CAAAC------------ACGCGCT----------------CATAC---TCAC---ACCTTC------ACA--C---ACG--CGCTTAT----AC--TCACGCCTTC-ACAC-A--C
gi|13 : ATA-T--AT-------ATTACATAATTATATAAAGAGCATTATAAACAAGAATATGAA--CA--GC---AA-ATCAGAAA--CAAAA--G-ATGTCATTATTAA---ATAGAGCAAAG----GAGAAT---T----A----CTT-A----ACATTTGAATTTCAGAACGCTATA---A-TGCACGAACACGCACAGATACCGGCAAATTCAGTTGTACGT-AATT--AG--GC-TA-------A-AAA---------ATACA--------GG------------CAGAC------------A--TATA-----------------AG--------A---AA--CT------ATA--T---ATG--TGCATTT----AG--TCACCATTTT-TCTA-C--CACA----T-ATA-CATGAAC--AT---------AA-TC-GCG---AA--------------TA--AGTAC-ATACAG-Ag
gi|14 : TTTTCTCCATT---AGCGGAGAGCGACATA-T--AT-------GTTA-----TTACATAAAGAACATATTAAACATGAATATGAG--TA--GC--AAA-A-CAAATATTCAAAA--GTATATTAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----GTT-T----ACATTTGAATTGCAAAGTGCTACACCAC-TGCACTAACACGCACAGATACACGCAATTACAGACATATATGAA-CAAAA--GCGTG-------ATGAT---------GTACA--------AG------------CAGTC------------ACCCATA----------------CAGAC---TAAA---AT--GC------AAA--C---AC---TGTATAC----AC--
gi|15 : tattTTAAACCAAAACAAAGATGAGTTAATTGGGATT---------T-GATAC---TTTTAGAAA-ACACTTGAATCCAAATATTGAGCGTATAGTGCTCCAAAGCA--TTTGCCTGTTTGTTTCATTTACCACACAATCAAAGGCTT--A--ATGAAGAAATAGTTCA-TTGTACTTAGTCTGCACTTATGCCACATTTGGCTGTAATCATACAAGTAGACATTGTATAATATTTTCATAGTGCT
gi|16 : aaTATGTCCTCTAGT---AGCGCAGTGCAGCATA-T--TT-------GTTA-----TTACATTAAGAATATAATAGATATTAATATAAG--CG--GC---AA-ACCACATG--CATAA--GGATATC---GTGAAAACATACACTGAAACGTACAGGA----C----A----ATT-ACTGTACATTTGACTTACAGAtg
gi|17 : TATATTCTTTATTACCT---TTCAAATCGGAGAGCAACATC-A--AT-------GTTA-----TCACAC--AGAAAATAGTAAACATGAATATGA---CA--TC--AAA---CACATA--CAAAAATATATATCAATGATAT---AAAGAGCAATGCAT
gi|18 : attTATTATTTGTTTC-TGCAGT---ACCAGGGAGCAGCATACT--TT-------CATA-----TTACATAAAGAACATAGT--ACATGAATGTGAA--CA--GCCGCAA-ATTACATG--CAAGA--AGATA
gi|19 : catgtacA--GCATG-------ACGACTAT------GTACA--------AA------------CAGAC------------GAAGAGA----------------AAGAC---TGGC---AA--AC------AAA--C---ACG--CACACGT----GC--ACACGCCTTC-ACAGCA--AACA----T---A-CAGGAAC--AC---------AA-GC-GTG---Ag
gi|2 : ATATATTCTTTATTTCCTCCATT---AGCGGAGAGCAACATA-T--AT-------GTTA-----TTACATAAAGAACATATTAAACATGAACATGAG--TA--GC--AAA-AAAACATA--CAAAA--GTTTATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAAAACGCTACACC-CCTGTACTAACACTGGCAGATATACGCAATTACAGACATACATGAATC--AA--GCGTG-------ATGAG---------GTACA--------AG------------CAGAC------------ACGCAAA----------------CAGAC---TGAA---AA--GG------AAA--C---ATG--CACATAT----AC--TAACGCCTTC-ACAG-A--CACA----T-G-AATATGAAC--AC---------AA-AC-ATG---AA--------------TA--CATAC-ATCCAC-AGTTTTAG-AGTCAACTCAATGC---TATGTT-TAATCACTAT--CTTGTATAATCTTTTCACCGAATAAA---CAGGGGAAA-AA-C-TGAAAAG---AGTT-----TT-A----ACAATATCTGT---A-AATATTAAATGAAAGTTACATCAGTATGACTATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATCCCGCTCATTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACCCATAGCAAAGATGAGTTATTTGGGATTGCATATCGGTAGATATGAATCGTAGAAA-ACACTCGAATCCAAATGCTGAATGAATATTATTCCAAAGCA--TTTGTCTGTTAGTTTCATTAACCGCACAGTCAAACACTA--A--ATGGAGAGATAGATCATTTGTACTAAGTCCGCACTTATGACACGATTGCCGGTAAGCATGAGAGTAGGTAAAACTTAATATTTTTATAGTGCTCCTACATTTTTCAAGTAAAAGAGGATATTCCTTGCTAAGGGACCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTCTCATCATCGCTCAATCTTAAGTTCAATGATAATTGCTCGAATGTATCTACA-----TATTGTCTTATGATATATTTCCAAACATGTTTTGAAGGAAAGACGCCCGATTCGATAAAACGTTCATAAATGTGAACTAAGTTGTAATGCCTTAATAAGT--TATATATATCAGGAATAAATCAGTTCCAGTCATTCAGTTTGTAAAAGTAAGATATATAAT--GATTTAtt
gi|20 : AAAATCTGAAACAATGGAGCTTCTCATCATCGCTCAATCCTAAGTTCAATAATAATTGTTCGGATTTATATA
gi|21 : TACAGAA----C----A----GTT-ACTAAACATTTTAATTGCAGACCGCTACA---T-TGCACAAACACGCGC--ATACAa
gi|3 : ATA-TCAAT-------GTTA-----TTACATAAA-----------ACATGAATATGAA--CA--GC--AAA--TCACATA--CACAA--ATAAATGATTATCAA---ATAGAGTAAAGCATAAAAGC----CAATTA----CTG-A----ACGTTCGAATTGCAGA-CACTACAAT-T-T--ATTAACACGCGCAAATACACGCAAT--CAG--ATACCTGAA-CAAAA--GCGTG-------ATAAT---------GTTCA--------AA------------CATAC------------ATACATA----------------CAAAC---TGAC---AA--TC------A-A--CTGAACG--T---TTT----GT--TTA----TTCAATAG-G--CAAA----T-------TGAAC--AA---------AA-----T----AA--------------TAATAATAC-ATGTAATAAT---AATAATAAAta
gi|3 : ATAAA---CA----AAA-TA-CATTAAAGG---AGTTATTTCTT-ATTTTATCTTTTCTGT---A-AATATTGAATGAATGTTACATCAGTATGAGTATA-TT--GCCGTTATTATG-------------TAC-----TCATT-GCAGAGT------------AT-TCATT-GTTAGTGACTTAATTCATAAACATATTGTGAAATCAATTTATGACTATTTTC--AGACATAAATCTTGATCTATTTTCAGCTGAAGAATTTCATATAAACAAAAACAAAGATAAGTTATTTAAAATTTCATATCG--------GAA----------------GAATCCACATATTGAGTGAATATTACTCTAAAGCA--CATGTCTGTTCGTTTCATTAACCACACACTCAAAGACCA--A--ATGAATATATTCTCCATATGTACCAGGTCCCGACTTATGACACATGTGTCGGTAAATATAAGGGTAGACATTGCTTGATATGTTTATAGTGCCCCTATATGTCTCGAGTAAATGAGGGCAGTTCTCGCTAAGATATCAAATCTTTGAGCTTTTTCGGAGAAAAACAAAATTAAAACTAAAACGACGGAGATTCTCATCATCGGTAAATCTTAAGCTCAGTAATAATTaaataaatagtgaaaaaaaaacaatcaaaatttagacatcatagtaaactataacgaaacgaaacataaggcactctggtgaaatctgaatgtatatgatatgataaacaaaatacattaaaggagttatttcttattttatcttttctgtaaatattgaatgaatgttacatcagtatgagtatattgccgttattatgtactcattgcagagtattcattgttagtgacttaattcataaacatattgtgaaatcaatttatgactattttcagacataaatcttgatctattttcagctgaagaatttcatataaacaaaaacaaagataagttatttaaaatttcatatcggaagaatccacatattgagtgaatattactctaaagcacatgtctgttcgtttcattaaccacacactcaaagaccaaatgaatatattctccatatgtaccaggtcccgacttatgacacatgtgtcggtaaatataagggtagacattgcttgatatgtttatagtgcccctatatgtctcgagtaaatgagggcagttctcgctaagatatcaaatctttgagctttttcggagaaaaacaaaattaaaactaaaacgacggagattctcatcatcggtaaatcttaagctcagtaataattttcaaacctgtttcgaaggaaagtcacccgattcaatttattattcatgaatatgaactaagttgttgtgtttctaaatcaaatatataagaaataaatccgcttttattattttggttctcaatacaacgtataagtatttatttcgaaaatt
gi|3 : atatcaatgttattacataaaacatgaatatgaacagcaaatcacatacacaaataaatgattatcaaatagagtaaagcataaaagccaattactgaacgttcgaattgcagacactacaatttattaacacgcgcaaatacacgcaatcagatacctgaacaaaagcgtgataatgttcaaacatacatacatacaaactgacaatcaactgaacgttttgtttattcaataggcaaattgaacaaaataataataatacatgtaataataataataaaaaataaatagtgaaaaaaaaacaatcaaaatttagacatcatagtaaactataacgaaacgaaacataaggcactctggtgaaatctgaatgtatatgatatgTAATA-ATTTTCAAACCTGTTTCGAAGGAAAGTCACCCGATTCAATTTATTATTCATGAATATGAACTAAGTTGTTGTGTTTC--TAAATCAAATATATA--AGAAATAAATCCGCTTTTATTATTTTGGTTCTCAA--TACAACGTATAAG--TATTTAttcaaacctgtttcgaaggaaagtcacccgattcaatttattattcatgaatatgaactaagttgttgtgtttctaaatcaaatatataagaaataaatccgcttttattattttggttctcaatacaacgtataagtatttatttcgaaaatt
gi|4 : atatcaatgttattacataaaacatgaatatgaacagcaaatcacatacacaaataaatgattatcaaatagagtaaagcataaaagccaattactgaacgttcgaattgcagacactacaatttattaacacgcgcaaatacacgcaatcagatacctgaacaaaagcgtgataatgttcaaacatacatacatacaaactgacaatcaactgaacgttttgtttattcaataggcaaattgaacaaaataataataatacatgtaataataataataaaaaataaatagtgaaaaaaaaacaatcaaaatttagacatcatagtaaactataacgaaacgaaacataaggcactctggtgaaatctgaatgtatatgatatgataaacaaaatacattaaaggagttatttcttattttatcttttctgtaaatattgaatgaatgttacatcagtatgagtatattgccgttattatgtactcattgcagagtattcattgttagtgacttaattcataaacatattgtgaaatcaatttatgactattttcagacataaatcttgatctattttcagctgaagaatttcatataaacaaaaacaaagataagttatttaaaatttcatatcggaagaatccacatattgagtgaatattactctaaagcacatgtctgttcgtttcattaaccacacactcaaagaccaaatgaatatattctccatatgtaccaggtcccgacttatgacacatgtgtcggtaaatataagggtagacattgcttgatatgtttatagtgcccctatatgtctcgagtaaatgagggcagttctcgctaagatatcaaatctttgagctttttcggagaaaaacaaaattaaaactaaaacgacggagattctcatcatcggtaaatcttaagctcagATATATTCTTTATTTCCTCCATT---AGCGGAGAGCGACATA-T--AT-------GTTA-----TTACATAAAGAACATATTAAACATGAAAAAAAAAACAAAGC--AAA-AAAACATA--CAAAA--GTATATCAATATTAA---ATAGAATAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAAAACGCTACACC-CCTGTACTAACACTCGCAGATATACGCAATTACAGCCATACATGAATC--AA--GCGTG-------ATGAG---------GTACA--------AG------------CAGAC------------ACGCATA----------------CAGAC---TGAA---AA--GG------AAA--C---ATG--CACATAT----AC--TAACGCCTTC-ACAG-A--CACA----T-G-AATATATAC--ATCCACAGTTTAA-GC-GCC---AACTCAAAGATTTGTTTA--ATCACTATACAA-AAT---AA-AGTAAA-TAAACACAGGCATATTATAATGGTTATTTCTTGTACAATCTTTTCACCGAATAAA---AAGGGGGAA-AA-C-TGAAAAT---AGTT-----TT-A----ACCATATCTGT---A-AATATTAAATGAAAGCTACATCAGTATGAATATA-TA--ACACTTAATAAG-------------CAT-----TCACT-GATGA-T------------ATCTCGCTCGTTAGAAGATTAATTCATAAGCATAATGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAGCCCATAGCAAAGATGAGTTATTAGGGATTGCATATCGGTAGATATGAATCGTAGAAA-ACACTCGAATCCAAATACTTAATGAATATTATTCCAAAGAA--TTTGTCTGTTAGTTTCATTAACCGCACAGTCAAACACTA--A--ATGGAGAGATAGATCATTTGTACTAAGTCCACACTTATGACACGTTTGCCGGTAAGCATGAGAGTAGGTAAAACTTAATATTTTTATATTGCTCCTACATTTTTCAAGTAAAAGAGGATATTCCTTTCTAAGAGACCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTCTCATCATCGCTCAATCTTAAGCTCAATGATAATTGCTCGGATGTATCtttcgaaaatt
gi|5 : ATATTCATTATTCCCTCCATT---AGTAGAAGGCGACATA-T--AC-------GTTA-----TTACATAAAGAACATATTAAACATGAACATGAG--TA--GC--AAA-AAT-CATA--CAGAA--ATATATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACACTTGAATTGCAAATCGCTACACCAC-TGCACTAACACTCGCAGATACACGCAATTACAGACATACATGAA-C--AAAAGCGTGATGAGGTATAAGCATACACGCATACAGACTAAAAAG------------CAAAC------------ACGCACATATACTCACTCCTTCACAGACACATGAATATGA--AC------AAAAAC---ATGAATGCATAC----AT--TCACAACTTT-A-----------------G-A--ATCAAC--CC---------AAAGCTGTG---TT--------------TA--ATCACCATACAA-AAT---AA-AATAAAATAAACACAGGCATATTACAATGGTTATTTCTTGTACAATCTTTTCACCGAGTAAA---CAGGGCAAA-AA-C-TAAACAT---AGTT-----TT-A----ACCATGTCTGT---A-AATATTAAATGAAAGTTAAATCAGTATCACTATA-TA--ACACTTAATATGTATTCACTGGTGACATCTCGCTCGCTAGAAGA-TTAATTCATAAGCATCTCGCTCGCTAGAAGATTAATTCATAAGCATACTATGGAATGAAATTACGACTATTTTC--AGACATAAGCATTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACC-ATAGCAAAGATGAGTTATTTGGGATTGTATATCGGTAGATATGAATTGTAGAAA-ACACTCGAATCCAAATACTGAATGAATATTATTCCAAATCA--TTTGTCTGTTaa
gi|6 : -ATACAA-AAT---AA-AGTAAAATAAACACAGGCATATTACGATGGTTATTTCTTGTACAATCTTTTTACCGAGTTAA---CAGGGAAAA-AA-C-TGAAAAG---AGTT-----TT-A----ACCATGTCTGT---A-AATATTAAATGAAAGTTACATCGGTATGAATATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATATCGCTCGTTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTT---AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTTACCAATAGCAAAGATGAGTTATTTGGGATTGCATATCGGTAAATATTAATCGTAGAAA-ACACTCGAATCCAAATACTGAATGAATATTATTCCAAACCATTTTTGTCTGTTAGTTTCATTAACCGCACAATCAAACACTATCATTATGGAGAGATAGTTCATTTGTACAAAGTCCACACTTATGACACGCTTGCCGGTAAGCATACGAGTAGGTAATACTTAATATTTTTgcgtcgtcataccaacaaagactgttagtgtttaaaaata
gi|7 : ccacagttttagcgtcaactaaaagctatgtttaatcattTATATTCTTTATTTCTTCAATA---AAATGATACCAACATA-T--AT-------GTAA-----TTACATAAAGAACATAGTAAACATGAATATGAG--CA--TC---AA-ATCACATA--CAAAA--ATATATCAATATTAA---AAAGAGTAAAGCATACAGGA----CAATTA----CTT-A----ACATTTGAATTGTAGATCGTTACA---T-TGCACTAACAC-------TAAACGTAATT-TGG-------TAAAT-------GC-------------AG-----------ACA--------CG------------CAGAC-----------------TA-------------------AC---TAGC---AA--GC------ATA--C---ACG--CGCATAT----AT--TCACGCATTC-ACAG-A--CACA----TGG-A-TATGAAC--AC---------AA-GC-ATG---AT--------------TA--GGAAC-ATACAT-AGTCTAAG-AGTATACTTAA---AGCTATAT--------TTATTTAATATACAA-----------AATAAA------GCAAAATAA-T-ACAAAAGAAAAGTT-----TT-A----ACTCTGTCTAT---T-AAAATTAAATGAACGTTACATCAGTATGAGTATA-TT--ACAATTAATATG-------------CAT-----TCACT-GAAGA-T------------ATCTCGCCCGTTAGAAGATTAATTCATAAGCGTATTGTCAAATGAATTTACAACCA
gi|8 : aaatTTATTTCATCCATT---AACTGAGAGCAACTTT-TTCAT-------GTTA-----TTACATAAAGAACATAATAAACATGAATATGAA--CA--AC---TA-ATCCCATA--CAAAG--ATATACCATTATTAA---ATAGAATAAAGCATACACGAAAATT----A----CTT-A----ATA-TTGAAATACAGAGCGCTATA
gi|9 : taattgAGCCAAACAAAATTATATTACAATGGTTAGTTCTTGTTCCATATTTTCGCTCAGAGAA---CAGAGAAAA-AA----GAAAAACAAAATT-------------ATTATTTCTATTTTATAGTTTTGAATGGAAGTCACAACAGTATGAGTGTATTAGTACCCTTATTATG-------------TAT-----TTATT-tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacatcgagaggctgagaatcaacataaagttttggttaactaatatacaacataaagcgaaataatacaagga
Alignments
lowQualScore : 111 111111111 1111 33333 11 2222 1111111 222222222 1111111111111111111111 222222222222222222222222222222222222 1111111111 33333333333333333 333333333333333 1 222 1 111 11111 2222222222222 11111 222222222222 22222 1 11 11
lowQualScore : 555 0 2 77 9999999 77777 2 555 33 444 555 33 444 0 555 555555555 6666 3 3333 5 55555 5 3 22 5555 55 2 1111111 000000000 9999999999999999999999 999999999999999999999999999999999999 666 999999 1111111111 4 55 666 55 7777 55 1 4 6666 99999999999999999 1 66 777 4 4 555555555555555 77 5 0 5 000 5 1 0 11 777 4 666 555 11111 4 9999 2 777 4 2 4 66 4444444444444 11111 4 0 5 555555555555 77 4 0 5 77 99999 1 1 1 77777 7 0 0 1 7 2 7 3 88 1 88
lowQualScore : ... . . .. ....... ..... . ... .. ... ... .. ... . ... ......... .... . .... . ..... . . .. .... .. . ....... ......... ...................... .................................... ... ...... .......... . .. ... .. .... .. . . .... ................. . .. ... . . ............... .. . . . ... . . . .. ... . ... ... ..... . .... . ... . . . .. ............. ..... . . . ............ .. . . . .. ..... . . . ..... . . . . . . . . .. . ..
lowQualScore : 888 7 9 99 3333333 11111 0 555 99 111 666 99 444 7 444 222222222 5555 1 1111 8 55555 9 3 33 2222 00 0 8888888 999999999 3333333333333333333333 222222222222222222222222222222222222 444 000000 2222222222 5 00 444 00 7777 00 6 0 8888 00000000000000000 1 11 888 4 4 777777777777777 77 7 0 0 000 7 4 7 22 888 4 222 666 11111 4 4444 7 888 4 7 4 11 4444444444444 11111 4 8 0 666666666666 99 5 1 7 99 33333 0 0 0 55555 3 7 7 0 3 0 3 7 33 0 33
consensus : ATATATTCTTTATTTCCTCCATT---AGCGGAGAGCGACATA-T--AT-------GTTA-----TTACATAAAGAACATANTAAACATGAATATGAG--CA--GC--AAA-ANCACATA--CAAAA--GTATATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAGAGCGCTACACC-C-TGCACTAACACGCGCAGATACACGCAATTACAGACATACATGAATC--AA--GCGTG-------ATGAG---------GTACA--------AG------------CAGAC------------ACGCATA----------------CAGAC---TGAA---AA--GC------ANA--C---ACG--CGCATAT----AC--TCACGCCTTC-ACAG-A--CACA----T-G-A-------CATGAAC--A---CAA-GC-GTGAN--------------TAANCA-C-ATACAA-AAT---AA-AGTAAACTAAACACAGGCATATTACAATGGTTATTTCTTGTACAATCTTTTCACCGAATAAA---CAGGGAAAA-AA-C-TGAAAAG---AGTT-----TT-A----ACCATGTCTGT---A-AATATTAAATGAAAGTTACATCAGTATGAGTATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATCTCGCTCGTTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACCCATAGCAAAGATGAGTTATTTGGGATTGCATATCGGTAGATATGAATCGTAGAAA-ACACTCGAATCCAAATACTGAATGAATATTATTCCAAAGCA--TTTGTCTGTTAGTTTCATTAACCGCACAGTCAAACACTA--A--ATGGAGAGATAGNTCATTTGTACTAAGTCCGCACTTATGACACGTTTGCCGGTAAGCATGNGAGTAGGTAANACTTAATATTTTTATAGTGCTCCTACATTTTTCAAGTAAAAGAGGATATTCCTTGCTAAGGGACCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTCTCATCATCGCTCAATCTTAAGCTCAATGATAATTGCTCGGATGTATCTACATAATTTATTGTCTTATGATATATTTCCAAACATGTTTCGAAGGAAAGACGCCCGATTCGATAAANCGTTCATAAATGTGAACTAAGTTGTAATGTCTTAATAAGTCATATATATATCAGGAATAAATCCGCTTTTATTATTCGGGTTGTCAA--TANAACGTATAAG--TATTTA
Reference ( family-6539 ) : ATATATTCTTTATTTCCTCCATT---AGCGGAGAGCGACATA-T--AT-------GTTA-----TTACATAAAGAACATANTAAACATGAATATGAG--CA--GC--AAA-ANCACATA--CAAAA--GTATATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAGAGCGCTACACC-C-TGCACTAACACGCGCAGATACACGCAATTACAGACATACATGAATC--AA--GCGTG-------ATGAG---------GTACA--------AG------------CAGAC------------ACGCATA----------------CAGAC---TGAA---AA--GC------ANA--C---ACG--CGCATAT----AC--TCACGCCTTC-ACAG-A--CACA----T-G-A-------CATGAAC--A---CAA-GC-GTGAA--------------TAANTA-C-ATACAA-AAT---AA-AGTAAACTAAACACAGGCATATTACAATGGTTATTTCTTGTACAATCTTTTCACCGAATAAA---CAGGGAAAA-AA-C-TGAAAAG---AGTT-----TT-A----ACCATGTCTGT---A-AATATTAAATGAAAGTTACATCAGTATGAGTATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATCTCGCTCGTTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACCCATAGCAAAGATGAGTTATTTGGGATTGCATATCGGTAGATATGAATCGTAGAAA-ACACTCGAATCCAAATACTGAATGAATATTATTCCAAAGCA--TTTGTCTGTTAGTTTCATTAACCGCACAGTCAAACACTA--A--ATGGAGAGATAGNTCATTTGTACTAAGTCCGCACTTATGACACGTTTGCCGGTAAGCATGNGAGTAGGTAANACTTAATATTTTTATAGTGCTCCTACATTTTTCAAGTAAAAGAGGATATTCCTTGCTAAGGGACCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTCTCATCATCGCTCAATCTTAAGCTCAATGATAATTGCTCGGATGTATCTACATAATTTATTGTCTTATGATATATTTCCAAACATGTTTCGAAGGAAAGACGCCCGATTCGATAAANCGTTCATAAATGTGAACTAAGTTGTAATGTCTTAATAAGTCATATATATATCAGGAATAAATCCGCTTTTATTATTCGGGTTGTCAA--TANAACGTATAAG--TATTTA
gi|1 : TATATTCTTTATTTCCTCCATT---AGCGGAGAGAGACATA-T--AT-------GTTA-----TTACATAAAGAACATAATAAATATGAACATGAA--TA--GC--AAA-AAAACACA--CAAAA--GTATATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAAAACGCTACACC-CCTGCACTAACACTCGCAGCTATACGCAACTACAGACATACATGAATC--AA--TCGTG-------ATGAG---------GTATA--------AGCAGACACGCATACAGACTGAAAAGGAAACATGCATA----------------TATAC---T--A---AC--GCCTTCACAGA--C---ACA--TGAATACGAACACAATCATGAATAC-ATAC-ATCCACAGTTTT-A-G-------CATCAACTCA---AAA-AT-GTGTT--------------TAATCAAT-ATACAA-AAC---AA-AGTAAA-TAAACACAGGCATGTTATAATGGTTATTTCTTGTACAATCTTTTCACCGAAAAAAAAACAGGGAAAA-AAAC-TGAAAAG---AGTT-----TT-A----ACCATATCTGT---A-AATATTAAATGAGAGTTACATCAGTATGAATATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATCTCGCTCGTTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTTTTTAGACATAAGTCTTGCTCGGTTTTCATCTGAAGTGTTTTGTTTAACCTATAGCAAAGATGAGTTATTTGGGATTGAATATCCGTAGATATGAATCATAAAAATACACTCGAATCAAAATACTGAATGAATATTATTCCAATGCA--TTTGTCAGTTAGTTTCATTAACCGCATAGCCAAACACTA--A--ATGGAGAGATAGATCATTTGTACTAAGTCCGCATTTATGACACGTTTGCAGGTAAGCATGTGAGTAGGTAAAACTTAATATTTTTACAGTGCTCCTACATTTTTCAATTAAAAGAGGATATTCCTTGCTAAGGGTCCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTGTCATCATCGCTCAATCTTAAGCTCAATGATAATTGCTCGGATGTATCTACATAATTTATTGTCTTATGATATATTTCCAAACATGTTTTGAAGGAAAGACACACGATTCGATAAAGCGTTCATAAATGTGAACTAAGTTGTAATGTCTTAATAAGTTATATATGTATCAGGAATAAACCCTCTTTTATTATACGGGTTGTCAT--TATAACGTATAAGTCTATTTA
gi|10 : ATATTATAATGGTTATTTCTTGTACAATCTTTTCACCGAATGAA---CAGGGAAAA-AA-C-TGAAAAG---AGTT-----TTGA----ACCATATCTGT---A-AATATCAAATGAAAGTTACATCAGTATAGATATA-TA--ACACTTAATATG-------------CGT-----TTACT-GATGA-T------------ATCTCGCTCGTTTGAAGATCAACTCATGAGCATATTGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACCCATAGCAAAGATAATTTATTAGGGGTTGCATAACGGTAGATATGAATCGTAaaagta
gi|11 : TATATTCTTTCTTTCCTCAATT---AACGGAGGGCAACATA-T--TT-------GTTA-----TGACATAAAGAACATATTAAATACGAACATGAG--CA--GC--AAATAACACACA--CCAA----TATATCAATATTAA---ATAGAGTAAAAGGGACAGGA----C----A----CTT-T----ACATTTGAATTGCAAAGCGCTACA---T-TGCACTAACATTCGCAGATACACG--------------CATGAA-CAAAA--GCGTG-------ATGAG---------GTACA--------AG------------CAGAC------------ACATATA----------------CAGAC---TAGA---AA--GC------ATA--C---ACG--CGCATAT----AC--CCGCGCATTC-ACAG-A--CACA----TGG-A-------TATCAAC--A---CAA-GC-AT
gi|12 : ACATTCTTTATTTCTTCCGGT---AACTAAGAGTAACATG-T--ATTTTTTATGTTA-----TTATTGAAAGATCACAGTAAACATGAATATGAA--CA--GC---AA-ATCAC--------------GTATCACTATTAA---ATAGAGTAAAACAAACAGGA----C----AATTTCTTAA----ACATTTGAATTGCAGAGCACTACA---T-TGCACTAGCATGCGCAGATACAGTTAATTACAGA-------AAACC--AT--CCATG--------TAAG---------GCACA--------AG------------CAAAC------------ACGCGCT----------------CATAC---TCAC---ACCTTC------ACA--C---ACG--CGCTTAT----AC--TCACGCCTTC-ACAC-A--C
gi|13 : ATA-T--AT-------ATTACATAATTATATAAAGAGCATTATAAACAAGAATATGAA--CA--GC---AA-ATCAGAAA--CAAAA--G-ATGTCATTATTAA---ATAGAGCAAAG----GAGAAT---T----A----CTT-A----ACATTTGAATTTCAGAACGCTATA---A-TGCACGAACACGCACAGATACCGGCAAATTCAGTTGTACGT-AATT--AG--GC-TA-------A-AAA---------ATACA--------GG------------CAGAC------------A--TATA-----------------AG--------A---AA--CT------ATA--T---ATG--TGCATTT----AG--TCACCATTTT-TCTA-C--CACA----T-ATA-------CATGAAC--A---TAA-TC-GCGAA--------------TAAGTA-C-ATACAG-Ag
gi|14 : TTTTCTCCATT---AGCGGAGAGCGACATA-T--AT-------GTTA-----TTACATAAAGAACATATTAAACATGAATATGAG--TA--GC--AAA-A-CAAATATTCAAAA--GTATATTAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----GTT-T----ACATTTGAATTGCAAAGTGCTACACCAC-TGCACTAACACGCACAGATACACGCAATTACAGACATATATGAA-CAAAA--GCGTG-------ATGAT---------GTACA--------AG------------CAGTC------------ACCCATA----------------CAGAC---TAAA---AT--GC------AAA--C---AC---TGTATAC----AC--
gi|15 : tattTTAAACCAAAACAAAGATGAGTTAATTGGGATT---------T-GATAC---TTTTAGAAA-ACACTTGAATCCAAATATTGAGCGTATAGTGCTCCAAAGCA--TTTGCCTGTTTGTTTCATTTACCACACAATCAAAGGCTT--A--ATGAAGAAATAGTTCA-TTGTACTTAGTCTGCACTTATGCCACATTTGGCTGTAATCATACAAGTAGACATTGTATAATATTTTCATAGTGCT
gi|16 : aaTATGTCCTCTAGT---AGCGCAGTGCAGCATA-T--TT-------GTTA-----TTACATTAAGAATATAATAGATATTAATATAAG--CG--GC---AA-ACCACATG--CATAA--GGATATC---GTGAAAACATACACTGAAACGTACAGGA----C----A----ATT-ACTGTACATTTGACTTACAGAtg
gi|17 : TATATTCTTTATTACCT---TTCAAATCGGAGAGCAACATC-A--AT-------GTTA-----TCACAC--AGAAAATAGTAAACATGAATATGA---CA--TC--AAA---CACATA--CAAAAATATATATCAATGATAT---AAAGAGCAATGCAT
gi|18 : attTATTATTTGTTTC-TGCAGT---ACCAGGGAGCAGCATACT--TT-------CATA-----TTACATAAAGAACATAGT--ACATGAATGTGAA--CA--GCCGCAA-ATTACATG--CAAGA--AGATA
gi|19 : catgtacA--GCATG-------ACGACTAT------GTACA--------AA------------CAGAC------------GAAGAGA----------------AAGAC---TGGC---AA--AC------AAA--C---ACG--CACACGT----GC--ACACGCCTTC-ACAGCA--AACA----T---A-------CAGGAAC--A---CAA-GC-GTGAg
gi|2 : ATATATTCTTTATTTCCTCCATT---AGCGGAGAGCAACATA-T--AT-------GTTA-----TTACATAAAGAACATATTAAACATGAACATGAG--TA--GC--AAA-AAAACATA--CAAAA--GTTTATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAAAACGCTACACC-CCTGTACTAACACTGGCAGATATACGCAATTACAGACATACATGAATC--AA--GCGTG-------ATGAG---------GTACA--------AG------------CAGAC------------ACGCAAA----------------CAGAC---TGAA---AA--GG------AAA--C---ATG--CACATAT----AC--TAACGCCTTC-ACAG-A--CACA----T-G-AA------TATGAAC--A---CAA-AC-ATGAA--------------TACATA-C-ATCCAC-AGTTTTAG-AGTCAACTCAATGC---TATGTT-TAATCACTAT--CTTGTATAATCTTTTCACCGAATAAA---CAGGGGAAA-AA-C-TGAAAAG---AGTT-----TT-A----ACAATATCTGT---A-AATATTAAATGAAAGTTACATCAGTATGACTATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATCCCGCTCATTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACCCATAGCAAAGATGAGTTATTTGGGATTGCATATCGGTAGATATGAATCGTAGAAA-ACACTCGAATCCAAATGCTGAATGAATATTATTCCAAAGCA--TTTGTCTGTTAGTTTCATTAACCGCACAGTCAAACACTA--A--ATGGAGAGATAGATCATTTGTACTAAGTCCGCACTTATGACACGATTGCCGGTAAGCATGAGAGTAGGTAAAACTTAATATTTTTATAGTGCTCCTACATTTTTCAAGTAAAAGAGGATATTCCTTGCTAAGGGACCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTCTCATCATCGCTCAATCTTAAGTTCAATGATAATTGCTCGAATGTATCTACA-----TATTGTCTTATGATATATTTCCAAACATGTTTTGAAGGAAAGACGCCCGATTCGATAAAACGTTCATAAATGTGAACTAAGTTGTAATGCCTTAATAAGT--TATATATATCAGGAATAAATCAGTTCCAGTCATTCAGTTTGTAAAAGTAAGATATATAAT--GATTTAtt
gi|20 : AAAATCTGAAACAATGGAGCTTCTCATCATCGCTCAATCCTAAGTTCAATAATAATTGTTCGGATTTATATA
gi|21 : TACAGAA----C----A----GTT-ACTAAACATTTTAATTGCAGACCGCTACA---T-TGCACAAACACGCGC--ATACAa
gi|3 : ATA-TCAAT-------GTTA-----TTACATAAA-----------ACATGAATATGAA--CA--GC--AAA--TCACATA--CACAA--ATAAATGATTATCAA---ATAGAGTAAAGCATAAAAGC----CAATTA----CTG-A----ACGTTCGAATTGCAGA-CACTACAAT-T-T--ATTAACACGCGCAAATACACGCAAT--CAG--ATACCTGAA-CAAAA--GCGTG-------ATAAT---------GTTCA--------AA------------CATAC------------ATACATA----------------CAAAC---TGAC---AA--TC------A-A--CTGAACG--T---TTT----GT--TTA----TTCAATAG-G--CAAA----T-------------TGAAC--A---AAA-TA-AT-AA--------------TAA-TA-C-ATGTAATAAT---AATAATAAAta
gi|3 : ATAAA---CA----AAA-TA-CATTAAAGG---AGTTATTTCTT-ATTTTATCTTTTCTGT---A-AATATTGAATGAATGTTACATCAGTATGAGTATA-TT--GCCGTTATTATG-------------TAC-----TCATT-GCAGAGT------------AT-TCATT-GTTAGTGACTTAATTCATAAACATATTGTGAAATCAATTTATGACTATTTTC--AGACATAAATCTTGATCTATTTTCAGCTGAAGAATTTCATATAAACAAAAACAAAGATAAGTTATTTAAAATTTCATATCG--------GAA----------------GAATCCACATATTGAGTGAATATTACTCTAAAGCA--CATGTCTGTTCGTTTCATTAACCACACACTCAAAGACCA--A--ATGAATATATTCTCCATATGTACCAGGTCCCGACTTATGACACATGTGTCGGTAAATATAAGGGTAGACATTGCTTGATATGTTTATAGTGCCCCTATATGTCTCGAGTAAATGAGGGCAGTTCTCGCTAAGATATCAAATCTTTGAGCTTTTTCGGAGAAAAACAAAATTAAAACTAAAACGACGGAGATTCTCATCATCGGTAAATCTTAAGCTCAGTAATAATTaaataaatagtgaaaaaaaaacaatcaaaatttagacatcatagtaaactataacgaaacgaaacataaggcactctggtgaaatctgaatgtatatgatatgataaacaaaatacattaaaggagttatttcttattttatcttttctgtaaatattgaatgaatgttacatcagtatgagtatattgccgttattatgtactcattgcagagtattcattgttagtgacttaattcataaacatattgtgaaatcaatttatgactattttcagacataaatcttgatctattttcagctgaagaatttcatataaacaaaaacaaagataagttatttaaaatttcatatcggaagaatccacatattgagtgaatattactctaaagcacatgtctgttcgtttcattaaccacacactcaaagaccaaatgaatatattctccatatgtaccaggtcccgacttatgacacatgtgtcggtaaatataagggtagacattgcttgatatgtttatagtgcccctatatgtctcgagtaaatgagggcagttctcgctaagatatcaaatctttgagctttttcggagaaaaacaaaattaaaactaaaacgacggagattctcatcatcggtaaatcttaagctcagtaataattttcaaacctgtttcgaaggaaagtcacccgattcaatttattattcatgaatatgaactaagttgttgtgtttctaaatcaaatatataagaaataaatccgcttttattattttggttctcaatacaacgtataagtatttatttcgaaaatt
gi|3 : atatcaatgttattacataaaacatgaatatgaacagcaaatcacatacacaaataaatgattatcaaatagagtaaagcataaaagccaattactgaacgttcgaattgcagacactacaatttattaacacgcgcaaatacacgcaatcagatacctgaacaaaagcgtgataatgttcaaacatacatacatacaaactgacaatcaactgaacgttttgtttattcaataggcaaattgaacaaaataataataatacatgtaataataataataaaaaataaatagtgaaaaaaaaacaatcaaaatttagacatcatagtaaactataacgaaacgaaacataaggcactctggtgaaatctgaatgtatatgatatgTAATA-ATTTTCAAACCTGTTTCGAAGGAAAGTCACCCGATTCAATTTATTATTCATGAATATGAACTAAGTTGTTGTGTTTC--TAAATCAAATATATA--AGAAATAAATCCGCTTTTATTATTTTGGTTCTCAA--TACAACGTATAAG--TATTTAttcaaacctgtttcgaaggaaagtcacccgattcaatttattattcatgaatatgaactaagttgttgtgtttctaaatcaaatatataagaaataaatccgcttttattattttggttctcaatacaacgtataagtatttatttcgaaaatt
gi|4 : atatcaatgttattacataaaacatgaatatgaacagcaaatcacatacacaaataaatgattatcaaatagagtaaagcataaaagccaattactgaacgttcgaattgcagacactacaatttattaacacgcgcaaatacacgcaatcagatacctgaacaaaagcgtgataatgttcaaacatacatacatacaaactgacaatcaactgaacgttttgtttattcaataggcaaattgaacaaaataataataatacatgtaataataataataaaaaataaatagtgaaaaaaaaacaatcaaaatttagacatcatagtaaactataacgaaacgaaacataaggcactctggtgaaatctgaatgtatatgatatgataaacaaaatacattaaaggagttatttcttattttatcttttctgtaaatattgaatgaatgttacatcagtatgagtatattgccgttattatgtactcattgcagagtattcattgttagtgacttaattcataaacatattgtgaaatcaatttatgactattttcagacataaatcttgatctattttcagctgaagaatttcatataaacaaaaacaaagataagttatttaaaatttcatatcggaagaatccacatattgagtgaatattactctaaagcacatgtctgttcgtttcattaaccacacactcaaagaccaaatgaatatattctccatatgtaccaggtcccgacttatgacacatgtgtcggtaaatataagggtagacattgcttgatatgtttatagtgcccctatatgtctcgagtaaatgagggcagttctcgctaagatatcaaatctttgagctttttcggagaaaaacaaaattaaaactaaaacgacggagattctcatcatcggtaaatcttaagctcagATATATTCTTTATTTCCTCCATT---AGCGGAGAGCGACATA-T--AT-------GTTA-----TTACATAAAGAACATATTAAACATGAAAAAAAAAACAAAGC--AAA-AAAACATA--CAAAA--GTATATCAATATTAA---ATAGAATAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAAAACGCTACACC-CCTGTACTAACACTCGCAGATATACGCAATTACAGCCATACATGAATC--AA--GCGTG-------ATGAG---------GTACA--------AG------------CAGAC------------ACGCATA----------------CAGAC---TGAA---AA--GG------AAA--C---ATG--CACATAT----AC--TAACGCCTTC-ACAG-A--CACA----T-G-AATATATACATCCAC--AGTTTAA-GC-GCCAACTCAAAGATTTGTTTAATCA-CTATACAA-AAT---AA-AGTAAA-TAAACACAGGCATATTATAATGGTTATTTCTTGTACAATCTTTTCACCGAATAAA---AAGGGGGAA-AA-C-TGAAAAT---AGTT-----TT-A----ACCATATCTGT---A-AATATTAAATGAAAGCTACATCAGTATGAATATA-TA--ACACTTAATAAG-------------CAT-----TCACT-GATGA-T------------ATCTCGCTCGTTAGAAGATTAATTCATAAGCATAATGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAGCCCATAGCAAAGATGAGTTATTAGGGATTGCATATCGGTAGATATGAATCGTAGAAA-ACACTCGAATCCAAATACTTAATGAATATTATTCCAAAGAA--TTTGTCTGTTAGTTTCATTAACCGCACAGTCAAACACTA--A--ATGGAGAGATAGATCATTTGTACTAAGTCCACACTTATGACACGTTTGCCGGTAAGCATGAGAGTAGGTAAAACTTAATATTTTTATATTGCTCCTACATTTTTCAAGTAAAAGAGGATATTCCTTTCTAAGAGACCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTCTCATCATCGCTCAATCTTAAGCTCAATGATAATTGCTCGGATGTATCtttcgaaaatt
gi|5 : ATATTCATTATTCCCTCCATT---AGTAGAAGGCGACATA-T--AC-------GTTA-----TTACATAAAGAACATATTAAACATGAACATGAG--TA--GC--AAA-AAT-CATA--CAGAA--ATATATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACACTTGAATTGCAAATCGCTACACCAC-TGCACTAACACTCGCAGATACACGCAATTACAGACATACATGAA-C--AAAAGCGTGATGAGGTATAAGCATACACGCATACAGACTAAAAAG------------CAAAC------------ACGCACATATACTCACTCCTTCACAGACACATGAATATGA--AC------AAAAAC---ATGAATGCATAC----AT--TCACAACTTT-A-----------------G-A--------ATCAAC--C---CAAAGCTGTGTT--------------TAATCA-CCATACAA-AAT---AA-AATAAAATAAACACAGGCATATTACAATGGTTATTTCTTGTACAATCTTTTCACCGAGTAAA---CAGGGCAAA-AA-C-TAAACAT---AGTT-----TT-A----ACCATGTCTGT---A-AATATTAAATGAAAGTTAAATCAGTATCACTATA-TA--ACACTTAATATGTATTCACTGGTGACATCTCGCTCGCTAGAAGA-TTAATTCATAAGCATCTCGCTCGCTAGAAGATTAATTCATAAGCATACTATGGAATGAAATTACGACTATTTTC--AGACATAAGCATTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACC-ATAGCAAAGATGAGTTATTTGGGATTGTATATCGGTAGATATGAATTGTAGAAA-ACACTCGAATCCAAATACTGAATGAATATTATTCCAAATCA--TTTGTCTGTTaa
gi|6 : -ATACAA-AAT---AA-AGTAAAATAAACACAGGCATATTACGATGGTTATTTCTTGTACAATCTTTTTACCGAGTTAA---CAGGGAAAA-AA-C-TGAAAAG---AGTT-----TT-A----ACCATGTCTGT---A-AATATTAAATGAAAGTTACATCGGTATGAATATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATATCGCTCGTTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTT---AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTTACCAATAGCAAAGATGAGTTATTTGGGATTGCATATCGGTAAATATTAATCGTAGAAA-ACACTCGAATCCAAATACTGAATGAATATTATTCCAAACCATTTTTGTCTGTTAGTTTCATTAACCGCACAATCAAACACTATCATTATGGAGAGATAGTTCATTTGTACAAAGTCCACACTTATGACACGCTTGCCGGTAAGCATACGAGTAGGTAATACTTAATATTTTTgcgtcgtcataccaacaaagactgttagtgtttaaaaata
gi|7 : ccacagttttagcgtcaactaaaagctatgtttaatcattTATATTCTTTATTTCTTCAATA---AAATGATACCAACATA-T--AT-------GTAA-----TTACATAAAGAACATAGTAAACATGAATATGAG--CA--TC---AA-ATCACATA--CAAAA--ATATATCAATATTAA---AAAGAGTAAAGCATACAGGA----CAATTA----CTT-A----ACATTTGAATTGTAGATCGTTACA---T-TGCACTAACAC-------TAAACGTAATT-TGG-------TAAAT-------GC-------------AG-----------ACA--------CG------------CAGAC-----------------TA-------------------AC---TAGC---AA--GC------ATA--C---ACG--CGCATAT----AT--TCACGCATTC-ACAG-A--CACA----TGG-A-------TATGAAC--A---CAA-GC-ATGAT--------------TAGGAA-C-ATACAT-AGTCTAAG-AGTATACTTAA---AGCTATAT--------TTATTTAATATACAA-----------AATAAA------GCAAAATAA-T-ACAAAAGAAAAGTT-----TT-A----ACTCTGTCTAT---T-AAAATTAAATGAACGTTACATCAGTATGAGTATA-TT--ACAATTAATATG-------------CAT-----TCACT-GAAGA-T------------ATCTCGCCCGTTAGAAGATTAATTCATAAGCGTATTGTCAAATGAATTTACAACCA
gi|8 : aaatTTATTTCATCCATT---AACTGAGAGCAACTTT-TTCAT-------GTTA-----TTACATAAAGAACATAATAAACATGAATATGAA--CA--AC---TA-ATCCCATA--CAAAG--ATATACCATTATTAA---ATAGAATAAAGCATACACGAAAATT----A----CTT-A----ATA-TTGAAATACAGAGCGCTATA
gi|9 : taattgAGCCAAACAAAATTATATTACAATGGTTAGTTCTTGTTCCATATTTTCGCTCAGAGAA---CAGAGAAAA-AA----GAAAAACAAAATT-------------ATTATTTCTATTTTATAGTTTTGAATGGAAGTCACAACAGTATGAGTGTATTAGTACCCTTATTATG-------------TAT-----TTATT-tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacatcgagaggctgagaatcaacataaagttttggttaactaatatacaacataaagcgaaataatacaagga
Alignments
lowQualScore : 111 111111111 1111 33333 11 2222 1111111 222222222 1111111111111111111111 222222222222222222222222222222222222 1111111111 33333333333333333 2222222222222222 1 222 1111 1 111 11111 2222222222222 11111 222222222222 22222 1 11 11
lowQualScore : 555 0 2 77 9999999 77777 2 555 33 444 555 33 444 0 555 555555555 6666 3 3333 5 55555 5 3 22 5555 55 2 1111111 000000000 9999999999999999999999 999999999999999999999999999999999999 666 999999 1111111111 4 55 666 55 7777 55 1 4 6666 99999999999999999 1 66 777 4 9999999999999999 33 22 4 3 55 666 5 0000 1 0 11 777 4 666 555 11111 4 9999 2 777 4 2 4 66 4444444444444 11111 4 0 5 555555555555 77 4 0 5 77 99999 1 1 1 77777 7 0 0 1 7 2 7 3 88 1 88
lowQualScore : ... . . .. ....... ..... . ... .. ... ... .. ... . ... ......... .... . .... . ..... . . .. .... .. . ....... ......... ...................... .................................... ... ...... .......... . .. ... .. .... .. . . .... ................. . .. ... . ................ .. .. . . .. ... . .... . . .. ... . ... ... ..... . .... . ... . . . .. ............. ..... . . . ............ .. . . . .. ..... . . . ..... . . . . . . . . .. . ..
lowQualScore : 888 7 9 99 3333333 11111 0 555 99 111 666 99 444 7 444 222222222 5555 1 1111 8 55555 9 3 33 2222 00 0 8888888 999999999 3333333333333333333333 222222222222222222222222222222222222 444 000000 2222222222 5 00 444 00 7777 00 6 0 8888 00000000000000000 1 11 888 0 5555555555555555 66 99 4 3 33 222 0 6666 4 7 22 888 4 222 666 11111 4 4444 7 888 4 7 4 11 4444444444444 11111 4 8 0 666666666666 99 5 1 7 99 33333 0 0 0 55555 3 7 7 0 3 0 3 7 33 0 33
consensus : ATATATTCTTTATTTCCTCCATT---AGCGGAGAGCGACATA-T--AT-------GTTA-----TTACATAAAGAACATANTAAACATGAATATGAG--CA--GC--AAA-ANCACATA--CAAAA--GTATATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAGAGCGCTACACC-C-TGCACTAACACGCGCAGATACACGCAATTACAGACATACATGAATC--AA--GCGTG-------ATGAG---------GTACA--------AG------------CAGAC------------ACGCATA----------------CAGAC---TGAA---AA--GC------ANA--C---ACG--CGCATAT----AC--TCACGCCTTC-ACAG-A--CACA----T-G-A-------CATGAAC--A---CAA-GC-G--------------TGNTTAATCA-C-ATACAA-AAT-T-AA-AGTA----AACTAAACACAGGCATATTACAATGGTTATTTCTTGTACAATCTTTTCACCGAATAAA---CAGGGAAAA-AA-C-TGAAAAG---AGTT-----TT-A----ACCATGTCTGT---A-AATATTAAATGAAAGTTACATCAGTATGAGTATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATCTCGCTCGTTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACCCATAGCAAAGATGAGTTATTTGGGATTGCATATCGGTAGATATGAATCGTAGAAA-ACACTCGAATCCAAATACTGAATGAATATTATTCCAAAGCA--TTTGTCTGTTAGTTTCATTAACCGCACAGTCAAACACTA--A--ATGGAGAGATAGNTCATTTGTACTAAGTCCGCACTTATGACACGTTTGCCGGTAAGCATGNGAGTAGGTAANACTTAATATTTTTATAGTGCTCCTACATTTTTCAAGTAAAAGAGGATATTCCTTGCTAAGGGACCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTCTCATCATCGCTCAATCTTAAGCTCAATGATAATTGCTCGGATGTATCTACATAATTTATTGTCTTATGATATATTTCCAAACATGTTTCGAAGGAAAGACGCCCGATTCGATAAANCGTTCATAAATGTGAACTAAGTTGTAATGTCTTAATAAGTCATATATATATCAGGAATAAATCCGCTTTTATTATTCGGGTTGTCAA--TANAACGTATAAG--TATTTA
Reference ( family-6539 ) : ATATATTCTTTATTTCCTCCATT---AGCGGAGAGCGACATA-T--AT-------GTTA-----TTACATAAAGAACATANTAAACATGAATATGAG--CA--GC--AAA-ANCACATA--CAAAA--GTATATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAGAGCGCTACACC-C-TGCACTAACACGCGCAGATACACGCAATTACAGACATACATGAATC--AA--GCGTG-------ATGAG---------GTACA--------AG------------CAGAC------------ACGCATA----------------CAGAC---TGAA---AA--GC------ANA--C---ACG--CGCATAT----AC--TCACGCCTTC-ACAG-A--CACA----T-G-A-------CATGAAC--A---CAA-GC-G--------------TGANTAANCA-C-ATACAA-AAT---AA-AGTA----AACTAAACACAGGCATATTACAATGGTTATTTCTTGTACAATCTTTTCACCGAATAAA---CAGGGAAAA-AA-C-TGAAAAG---AGTT-----TT-A----ACCATGTCTGT---A-AATATTAAATGAAAGTTACATCAGTATGAGTATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATCTCGCTCGTTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACCCATAGCAAAGATGAGTTATTTGGGATTGCATATCGGTAGATATGAATCGTAGAAA-ACACTCGAATCCAAATACTGAATGAATATTATTCCAAAGCA--TTTGTCTGTTAGTTTCATTAACCGCACAGTCAAACACTA--A--ATGGAGAGATAGNTCATTTGTACTAAGTCCGCACTTATGACACGTTTGCCGGTAAGCATGNGAGTAGGTAANACTTAATATTTTTATAGTGCTCCTACATTTTTCAAGTAAAAGAGGATATTCCTTGCTAAGGGACCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTCTCATCATCGCTCAATCTTAAGCTCAATGATAATTGCTCGGATGTATCTACATAATTTATTGTCTTATGATATATTTCCAAACATGTTTCGAAGGAAAGACGCCCGATTCGATAAANCGTTCATAAATGTGAACTAAGTTGTAATGTCTTAATAAGTCATATATATATCAGGAATAAATCCGCTTTTATTATTCGGGTTGTCAA--TANAACGTATAAG--TATTTA
gi|1 : TATATTCTTTATTTCCTCCATT---AGCGGAGAGAGACATA-T--AT-------GTTA-----TTACATAAAGAACATAATAAATATGAACATGAA--TA--GC--AAA-AAAACACA--CAAAA--GTATATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAAAACGCTACACC-CCTGCACTAACACTCGCAGCTATACGCAACTACAGACATACATGAATC--AA--TCGTG-------ATGAG---------GTATA--------AGCAGACACGCATACAGACTGAAAAGGAAACATGCATA----------------TATAC---T--A---AC--GCCTTCACAGA--C---ACA--TGAATACGAACACAATCATGAATAC-ATAC-ATCCACAGTTTT-A-G-------CATCAACTCA---AAA-AT-G--------------TGTTTAATCAAT-ATACAA-AAC---AA-AGTA----AA-TAAACACAGGCATGTTATAATGGTTATTTCTTGTACAATCTTTTCACCGAAAAAAAAACAGGGAAAA-AAAC-TGAAAAG---AGTT-----TT-A----ACCATATCTGT---A-AATATTAAATGAGAGTTACATCAGTATGAATATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATCTCGCTCGTTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTTTTTAGACATAAGTCTTGCTCGGTTTTCATCTGAAGTGTTTTGTTTAACCTATAGCAAAGATGAGTTATTTGGGATTGAATATCCGTAGATATGAATCATAAAAATACACTCGAATCAAAATACTGAATGAATATTATTCCAATGCA--TTTGTCAGTTAGTTTCATTAACCGCATAGCCAAACACTA--A--ATGGAGAGATAGATCATTTGTACTAAGTCCGCATTTATGACACGTTTGCAGGTAAGCATGTGAGTAGGTAAAACTTAATATTTTTACAGTGCTCCTACATTTTTCAATTAAAAGAGGATATTCCTTGCTAAGGGTCCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTGTCATCATCGCTCAATCTTAAGCTCAATGATAATTGCTCGGATGTATCTACATAATTTATTGTCTTATGATATATTTCCAAACATGTTTTGAAGGAAAGACACACGATTCGATAAAGCGTTCATAAATGTGAACTAAGTTGTAATGTCTTAATAAGTTATATATGTATCAGGAATAAACCCTCTTTTATTATACGGGTTGTCAT--TATAACGTATAAGTCTATTTA
gi|10 : ATATTATAATGGTTATTTCTTGTACAATCTTTTCACCGAATGAA---CAGGGAAAA-AA-C-TGAAAAG---AGTT-----TTGA----ACCATATCTGT---A-AATATCAAATGAAAGTTACATCAGTATAGATATA-TA--ACACTTAATATG-------------CGT-----TTACT-GATGA-T------------ATCTCGCTCGTTTGAAGATCAACTCATGAGCATATTGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACCCATAGCAAAGATAATTTATTAGGGGTTGCATAACGGTAGATATGAATCGTAaaagta
gi|11 : TATATTCTTTCTTTCCTCAATT---AACGGAGGGCAACATA-T--TT-------GTTA-----TGACATAAAGAACATATTAAATACGAACATGAG--CA--GC--AAATAACACACA--CCAA----TATATCAATATTAA---ATAGAGTAAAAGGGACAGGA----C----A----CTT-T----ACATTTGAATTGCAAAGCGCTACA---T-TGCACTAACATTCGCAGATACACG--------------CATGAA-CAAAA--GCGTG-------ATGAG---------GTACA--------AG------------CAGAC------------ACATATA----------------CAGAC---TAGA---AA--GC------ATA--C---ACG--CGCATAT----AC--CCGCGCATTC-ACAG-A--CACA----TGG-A-------TATCAAC--A---CAA-GC-A--------------T
gi|12 : ACATTCTTTATTTCTTCCGGT---AACTAAGAGTAACATG-T--ATTTTTTATGTTA-----TTATTGAAAGATCACAGTAAACATGAATATGAA--CA--GC---AA-ATCAC--------------GTATCACTATTAA---ATAGAGTAAAACAAACAGGA----C----AATTTCTTAA----ACATTTGAATTGCAGAGCACTACA---T-TGCACTAGCATGCGCAGATACAGTTAATTACAGA-------AAACC--AT--CCATG--------TAAG---------GCACA--------AG------------CAAAC------------ACGCGCT----------------CATAC---TCAC---ACCTTC------ACA--C---ACG--CGCTTAT----AC--TCACGCCTTC-ACAC-A--C
gi|13 : ATA-T--AT-------ATTACATAATTATATAAAGAGCATTATAAACAAGAATATGAA--CA--GC---AA-ATCAGAAA--CAAAA--G-ATGTCATTATTAA---ATAGAGCAAAG----GAGAAT---T----A----CTT-A----ACATTTGAATTTCAGAACGCTATA---A-TGCACGAACACGCACAGATACCGGCAAATTCAGTTGTACGT-AATT--AG--GC-TA-------A-AAA---------ATACA--------GG------------CAGAC------------A--TATA-----------------AG--------A---AA--CT------ATA--T---ATG--TGCATTT----AG--TCACCATTTT-TCTA-C--CACA----T-ATA-------CATGAAC--A---TAA-TC-G--------------CGAATAAGTA-C-ATACAG-Ag
gi|14 : TTTTCTCCATT---AGCGGAGAGCGACATA-T--AT-------GTTA-----TTACATAAAGAACATATTAAACATGAATATGAG--TA--GC--AAA-A-CAAATATTCAAAA--GTATATTAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----GTT-T----ACATTTGAATTGCAAAGTGCTACACCAC-TGCACTAACACGCACAGATACACGCAATTACAGACATATATGAA-CAAAA--GCGTG-------ATGAT---------GTACA--------AG------------CAGTC------------ACCCATA----------------CAGAC---TAAA---AT--GC------AAA--C---AC---TGTATAC----AC--
gi|15 : tattTTAAACCAAAACAAAGATGAGTTAATTGGGATT---------T-GATAC---TTTTAGAAA-ACACTTGAATCCAAATATTGAGCGTATAGTGCTCCAAAGCA--TTTGCCTGTTTGTTTCATTTACCACACAATCAAAGGCTT--A--ATGAAGAAATAGTTCA-TTGTACTTAGTCTGCACTTATGCCACATTTGGCTGTAATCATACAAGTAGACATTGTATAATATTTTCATAGTGCT
gi|16 : aaTATGTCCTCTAGT---AGCGCAGTGCAGCATA-T--TT-------GTTA-----TTACATTAAGAATATAATAGATATTAATATAAG--CG--GC---AA-ACCACATG--CATAA--GGATATC---GTGAAAACATACACTGAAACGTACAGGA----C----A----ATT-ACTGTACATTTGACTTACAGAtg
gi|17 : TATATTCTTTATTACCT---TTCAAATCGGAGAGCAACATC-A--AT-------GTTA-----TCACAC--AGAAAATAGTAAACATGAATATGA---CA--TC--AAA---CACATA--CAAAAATATATATCAATGATAT---AAAGAGCAATGCAT
gi|18 : attTATTATTTGTTTC-TGCAGT---ACCAGGGAGCAGCATACT--TT-------CATA-----TTACATAAAGAACATAGT--ACATGAATGTGAA--CA--GCCGCAA-ATTACATG--CAAGA--AGATA
gi|19 : catgtacA--GCATG-------ACGACTAT------GTACA--------AA------------CAGAC------------GAAGAGA----------------AAGAC---TGGC---AA--AC------AAA--C---ACG--CACACGT----GC--ACACGCCTTC-ACAGCA--AACA----T---A-------CAGGAAC--A---CAA-GC-G--------------TGATTg
gi|2 : ATATATTCTTTATTTCCTCCATT---AGCGGAGAGCAACATA-T--AT-------GTTA-----TTACATAAAGAACATATTAAACATGAACATGAG--TA--GC--AAA-AAAACATA--CAAAA--GTTTATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAAAACGCTACACC-CCTGTACTAACACTGGCAGATATACGCAATTACAGACATACATGAATC--AA--GCGTG-------ATGAG---------GTACA--------AG------------CAGAC------------ACGCAAA----------------CAGAC---TGAA---AA--GG------AAA--C---ATG--CACATAT----AC--TAACGCCTTC-ACAG-A--CACA----T-G-AA------TATGAAC--A---CAA-AC-A--------------TGAATACATA-C-ATCCAC-AGTTTTAG-AGTC----AACTCAATGC---TATGTT-TAATCACTAT--CTTGTATAATCTTTTCACCGAATAAA---CAGGGGAAA-AA-C-TGAAAAG---AGTT-----TT-A----ACAATATCTGT---A-AATATTAAATGAAAGTTACATCAGTATGACTATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATCCCGCTCATTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACCCATAGCAAAGATGAGTTATTTGGGATTGCATATCGGTAGATATGAATCGTAGAAA-ACACTCGAATCCAAATGCTGAATGAATATTATTCCAAAGCA--TTTGTCTGTTAGTTTCATTAACCGCACAGTCAAACACTA--A--ATGGAGAGATAGATCATTTGTACTAAGTCCGCACTTATGACACGATTGCCGGTAAGCATGAGAGTAGGTAAAACTTAATATTTTTATAGTGCTCCTACATTTTTCAAGTAAAAGAGGATATTCCTTGCTAAGGGACCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTCTCATCATCGCTCAATCTTAAGTTCAATGATAATTGCTCGAATGTATCTACA-----TATTGTCTTATGATATATTTCCAAACATGTTTTGAAGGAAAGACGCCCGATTCGATAAAACGTTCATAAATGTGAACTAAGTTGTAATGCCTTAATAAGT--TATATATATCAGGAATAAATCAGTTCCAGTCATTCAGTTTGTAAAAGTAAGATATATAAT--GATTTA
gi|20 : AAAATCTGAAACAATGGAGCTTCTCATCATCGCTCAATCCTAAGTTCAATAATAATTGTTCGGATTTATATA
gi|21 : TACAGAA----C----A----GTT-ACTAAACATTTTAATTGCAGACCGCTACA---T-TGCACAAACACGCGC--ATACAa
gi|3 : ATA-TCAAT-------GTTA-----TTACATAAA-----------ACATGAATATGAA--CA--GC--AAA--TCACATA--CACAA--ATAAATGATTATCAA---ATAGAGTAAAGCATAAAAGC----CAATTA----CTG-A----ACGTTCGAATTGCAGA-CACTACAAT-T-T--ATTAACACGCGCAAATACACGCAAT--CAG--ATACCTGAA-CAAAA--GCGTG-------ATAAT---------GTTCA--------AA------------CATAC------------ATACATA----------------CAAAC---TGAC---AA--TC------A-A--CTGAACG--T---TTT----GT--TTA----TTCAATAG-G--CAAA----T-------------TGAAC--A---AAA-TA-A--------------T-AATAAT-A-C-ATGTAATAAT---AATAATA----AAta
gi|3 : ATAAA---CA----AAA-TA-CATTAAAGG---AGTTATTTCTT-ATTTTATCTTTTCTGT---A-AATATTGAATGAATGTTACATCAGTATGAGTATA-TT--GCCGTTATTATG-------------TAC-----TCATT-GCAGAGT------------AT-TCATT-GTTAGTGACTTAATTCATAAACATATTGTGAAATCAATTTATGACTATTTTC--AGACATAAATCTTGATCTATTTTCAGCTGAAGAATTTCATATAAACAAAAACAAAGATAAGTTATTTAAAATTTCATATCG--------GAA----------------GAATCCACATATTGAGTGAATATTACTCTAAAGCA--CATGTCTGTTCGTTTCATTAACCACACACTCAAAGACCA--A--ATGAATATATTCTCCATATGTACCAGGTCCCGACTTATGACACATGTGTCGGTAAATATAAGGGTAGACATTGCTTGATATGTTTATAGTGCCCCTATATGTCTCGAGTAAATGAGGGCAGTTCTCGCTAAGATATCAAATCTTTGAGCTTTTTCGGAGAAAAACAAAATTAAAACTAAAACGACGGAGATTCTCATCATCGGTAAATCTTAAGCTCAGTAATAATTaaataaatagtgaaaaaaaaacaatcaaaatttagacatcatagtaaactataacgaaacgaaacataaggcactctggtgaaatctgaatgtatatgatatgataaacaaaatacattaaaggagttatttcttattttatcttttctgtaaatattgaatgaatgttacatcagtatgagtatattgccgttattatgtactcattgcagagtattcattgttagtgacttaattcataaacatattgtgaaatcaatttatgactattttcagacataaatcttgatctattttcagctgaagaatttcatataaacaaaaacaaagataagttatttaaaatttcatatcggaagaatccacatattgagtgaatattactctaaagcacatgtctgttcgtttcattaaccacacactcaaagaccaaatgaatatattctccatatgtaccaggtcccgacttatgacacatgtgtcggtaaatataagggtagacattgcttgatatgtttatagtgcccctatatgtctcgagtaaatgagggcagttctcgctaagatatcaaatctttgagctttttcggagaaaaacaaaattaaaactaaaacgacggagattctcatcatcggtaaatcttaagctcagtaataattttcaaacctgtttcgaaggaaagtcacccgattcaatttattattcatgaatatgaactaagttgttgtgtttctaaatcaaatatataagaaataaatccgcttttattattttggttctcaatacaacgtataagtatttatttcgaaaatt
gi|3 : atatcaatgttattacataaaacatgaatatgaacagcaaatcacatacacaaataaatgattatcaaatagagtaaagcataaaagccaattactgaacgttcgaattgcagacactacaatttattaacacgcgcaaatacacgcaatcagatacctgaacaaaagcgtgataatgttcaaacatacatacatacaaactgacaatcaactgaacgttttgtttattcaataggcaaattgaacaaaataataataatacatgtaataataataataaaaaataaatagtgaaaaaaaaacaatcaaaatttagacatcatagtaaactataacgaaacgaaacataaggcactctggtgaaatctgaatgtatatgatatgTAATA-ATTTTCAAACCTGTTTCGAAGGAAAGTCACCCGATTCAATTTATTATTCATGAATATGAACTAAGTTGTTGTGTTTC--TAAATCAAATATATA--AGAAATAAATCCGCTTTTATTATTTTGGTTCTCAA--TACAACGTATAAG--TATTTAttcaaacctgtttcgaaggaaagtcacccgattcaatttattattcatgaatatgaactaagttgttgtgtttctaaatcaaatatataagaaataaatccgcttttattattttggttctcaatacaacgtataagtatttatttcgaaaatt
gi|4 : atatcaatgttattacataaaacatgaatatgaacagcaaatcacatacacaaataaatgattatcaaatagagtaaagcataaaagccaattactgaacgttcgaattgcagacactacaatttattaacacgcgcaaatacacgcaatcagatacctgaacaaaagcgtgataatgttcaaacatacatacatacaaactgacaatcaactgaacgttttgtttattcaataggcaaattgaacaaaataataataatacatgtaataataataataaaaaataaatagtgaaaaaaaaacaatcaaaatttagacatcatagtaaactataacgaaacgaaacataaggcactctggtgaaatctgaatgtatatgatatgataaacaaaatacattaaaggagttatttcttattttatcttttctgtaaatattgaatgaatgttacatcagtatgagtatattgccgttattatgtactcattgcagagtattcattgttagtgacttaattcataaacatattgtgaaatcaatttatgactattttcagacataaatcttgatctattttcagctgaagaatttcatataaacaaaaacaaagataagttatttaaaatttcatatcggaagaatccacatattgagtgaatattactctaaagcacatgtctgttcgtttcattaaccacacactcaaagaccaaatgaatatattctccatatgtaccaggtcccgacttatgacacatgtgtcggtaaatataagggtagacattgcttgatatgtttatagtgcccctatatgtctcgagtaaatgagggcagttctcgctaagatatcaaatctttgagctttttcggagaaaaacaaaattaaaactaaaacgacggagattctcatcatcggtaaatcttaagctcagATATATTCTTTATTTCCTCCATT---AGCGGAGAGCGACATA-T--AT-------GTTA-----TTACATAAAGAACATATTAAACATGAAAAAAAAAACAAAGC--AAA-AAAACATA--CAAAA--GTATATCAATATTAA---ATAGAATAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAAAACGCTACACC-CCTGTACTAACACTCGCAGATATACGCAATTACAGCCATACATGAATC--AA--GCGTG-------ATGAG---------GTACA--------AG------------CAGAC------------ACGCATA----------------CAGAC---TGAA---AA--GG------AAA--C---ATG--CACATAT----AC--TAACGCCTTC-ACAG-A--CACA----T-G-AATATATACATCCAC--AGTTTAA-GC-GCCAACTCAAAGATTTGTTTAATCA-CTATACAA-AAT---AA-AGTA----AA-TAAACACAGGCATATTATAATGGTTATTTCTTGTACAATCTTTTCACCGAATAAA---AAGGGGGAA-AA-C-TGAAAAT---AGTT-----TT-A----ACCATATCTGT---A-AATATTAAATGAAAGCTACATCAGTATGAATATA-TA--ACACTTAATAAG-------------CAT-----TCACT-GATGA-T------------ATCTCGCTCGTTAGAAGATTAATTCATAAGCATAATGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAGCCCATAGCAAAGATGAGTTATTAGGGATTGCATATCGGTAGATATGAATCGTAGAAA-ACACTCGAATCCAAATACTTAATGAATATTATTCCAAAGAA--TTTGTCTGTTAGTTTCATTAACCGCACAGTCAAACACTA--A--ATGGAGAGATAGATCATTTGTACTAAGTCCACACTTATGACACGTTTGCCGGTAAGCATGAGAGTAGGTAAAACTTAATATTTTTATATTGCTCCTACATTTTTCAAGTAAAAGAGGATATTCCTTTCTAAGAGACCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTCTCATCATCGCTCAATCTTAAGCTCAATGATAATTGCTCGGATGTATCtttcgaaaatt
gi|5 : ATATTCATTATTCCCTCCATT---AGTAGAAGGCGACATA-T--AC-------GTTA-----TTACATAAAGAACATATTAAACATGAACATGAG--TA--GC--AAA-AAT-CATA--CAGAA--ATATATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACACTTGAATTGCAAATCGCTACACCAC-TGCACTAACACTCGCAGATACACGCAATTACAGACATACATGAA-C--AAAAGCGTGATGAGGTATAAGCATACACGCATACAGACTAAAAAG------------CAAAC------------ACGCACATATACTCACTCCTTCACAGACACATGAATATGA--AC------AAAAAC---ATGAATGCATAC----AT--TCACAACTTT-A-----------------G-A--------ATCAAC--C---CAAAGCTG--------------TGTTTAATCA-CCATACAA-AAT---AA-AATA----AAATAAACACAGGCATATTACAATGGTTATTTCTTGTACAATCTTTTCACCGAGTAAA---CAGGGCAAA-AA-C-TAAACAT---AGTT-----TT-A----ACCATGTCTGT---A-AATATTAAATGAAAGTTAAATCAGTATCACTATA-TA--ACACTTAATATGTATTCACTGGTGACATCTCGCTCGCTAGAAGA-TTAATTCATAAGCATCTCGCTCGCTAGAAGATTAATTCATAAGCATACTATGGAATGAAATTACGACTATTTTC--AGACATAAGCATTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACC-ATAGCAAAGATGAGTTATTTGGGATTGTATATCGGTAGATATGAATTGTAGAAA-ACACTCGAATCCAAATACTGAATGAATATTATTCCAAATCA--TTTGTCTGTTaa
gi|6 : AA-GCTA--------------TGTTTAATCA-TTATACAA-AAT---AA-AGTA----AAATAAACACAGGCATATTACGATGGTTATTTCTTGTACAATCTTTTTACCGAGTTAA---CAGGGAAAA-AA-C-TGAAAAG---AGTT-----TT-A----ACCATGTCTGT---A-AATATTAAATGAAAGTTACATCGGTATGAATATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATATCGCTCGTTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTT---AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTTACCAATAGCAAAGATGAGTTATTTGGGATTGCATATCGGTAAATATTAATCGTAGAAA-ACACTCGAATCCAAATACTGAATGAATATTATTCCAAACCATTTTTGTCTGTTAGTTTCATTAACCGCACAATCAAACACTATCATTATGGAGAGATAGTTCATTTGTACAAAGTCCACACTTATGACACGCTTGCCGGTAAGCATACGAGTAGGTAATACTTAATATTTTTgcgtcgtcataccaacaaagactgttagtgtttaaaaata
gi|7 : ccacagttttagcgtcaactaaTATATTCTTTATTTCTTCAATA---AAATGATACCAACATA-T--AT-------GTAA-----TTACATAAAGAACATAGTAAACATGAATATGAG--CA--TC---AA-ATCACATA--CAAAA--ATATATCAATATTAA---AAAGAGTAAAGCATACAGGA----CAATTA----CTT-A----ACATTTGAATTGTAGATCGTTACA---T-TGCACTAACAC-------TAAACGTAATT-TGG-------TAAAT-------GC-------------AG-----------ACA--------CG------------CAGAC-----------------TA-------------------AC---TAGC---AA--GC------ATA--C---ACG--CGCATAT----AT--TCACGCATTC-ACAG-A--CACA----TGG-A-------TATGAAC--A---CAA-GC-A--------------TGATTAGGAA-C-ATACAT-AGTCTAAG-AGTA----TACTTAA---AGCTATAT--------TTATTTAATATACAA-----------AATAAA------GCAAAATAA-T-ACAAAAGAAAAGTT-----TT-A----ACTCTGTCTAT---T-AAAATTAAATGAACGTTACATCAGTATGAGTATA-TT--ACAATTAATATG-------------CAT-----TCACT-GAAGA-T------------ATCTCGCCCGTTAGAAGATTAATTCATAAGCGTATTGTCAAATGAATTTACAACCA
gi|8 : aaatTTATTTCATCCATT---AACTGAGAGCAACTTT-TTCAT-------GTTA-----TTACATAAAGAACATAATAAACATGAATATGAA--CA--AC---TA-ATCCCATA--CAAAG--ATATACCATTATTAA---ATAGAATAAAGCATACACGAAAATT----A----CTT-A----ATA-TTGAAATACAGAGCGCTATA
gi|9 : taattgCA-C-A-ACAC-AATCTTAA-TGTACATCAGCCAAACAAAATTATATTACAATGGTTAGTTCTTGTTCCATATTTTCGCTCAGAGAA---CAGAGAAAA-AA----GAAAAACAAAATT-------------ATTATTTCTATTTTATAGTTTTGAATGGAAGTCACAACAGTATGAGTGTATTAGTACCCTTATTATG-------------TAT-----TTATT-tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacatcgagaggctgagaatcaacataaagttttggttaactaatatacaacataaagcgaaataatacaagga
Alignments
lowQualScore : 111 111111111 1111 33333 11 2222 1111111 222222222 1111111111111111111111 222222222222222222222222222222222222 1111111111 33333333333333333 3333333333333333 1 44444 1111 1 111 11111 2222222222222 11111 222222222222 22222 1 11 11
lowQualScore : 555 0 2 77 9999999 77777 2 555 33 444 555 33 444 0 555 555555555 6666 3 3333 5 55555 5 3 22 5555 55 2 1111111 000000000 9999999999999999999999 999999999999999999999999999999999999 666 999999 1111111111 1 55 55 8888 55 0 77777 66666666666666666 2 999999 4 2222222222222222 1 5 1 5 5 2 00000 5 2222 1 0 11 777 4 666 555 11111 4 9999 2 777 4 2 4 66 4444444444444 11111 4 0 5 555555555555 77 4 0 5 77 99999 1 1 1 77777 7 0 0 1 7 2 7 3 88 1 88
lowQualScore : ... . . .. ....... ..... . ... .. ... ... .. ... . ... ......... .... . .... . ..... . . .. .... .. . ....... ......... ...................... .................................... ... ...... .......... . .. .. .... .. . ..... ................. . ...... . ................ . . . . . . ..... . .... . . .. ... . ... ... ..... . .... . ... . . . .. ............. ..... . . . ............ .. . . . .. ..... . . . ..... . . . . . . . . .. . ..
lowQualScore : 888 7 9 99 3333333 11111 0 555 99 111 666 99 444 7 444 222222222 5555 1 1111 8 55555 9 3 33 2222 00 0 8888888 999999999 3333333333333333333333 222222222222222222222222222222222222 444 000000 2222222222 0 55 55 5555 55 1 00000 22222222222222222 5 666666 4 1111111111111111 0 7 4 0 0 1 44444 7 1111 4 7 22 888 4 222 666 11111 4 4444 7 888 4 7 4 11 4444444444444 11111 4 8 0 666666666666 99 5 1 7 99 33333 0 0 0 55555 3 7 7 0 3 0 3 7 33 0 33
consensus : ATATATTCTTTATTTCCTCCATT---AGCGGAGAGCGACATA-T--AT-------GTTA-----TTACATAAAGAACATANTAAACATGAATATGAG--CA--GC--AAA-ANCACATA--CAAAA--GTATATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAGAGCGCTACACC-C-TGCACTAACACGCGCAGATACACGCAATTACAGACATACATGAATC--AA--GCGTG-------ATGAG---------GTACA--------AG------------CAGAC------------ACGCATA----------------CAGAC---TGAA---AA--GC------ANA--CACG--CGCATAT----AC--TCACGCCTTCACAG-A--CACA----T-G-A-------CATNAAC--A---CAA-GC-G--------------TGNTTA-ATCA-C-ATACANAAT--T--AA-AGTA----AACTAAACACAGGCATATTACAATGGTTATTTCTTGTACAATCTTTTCACCGAATAAA---CAGGGAAAA-AA-C-TGAAAAG---AGTT-----TT-A----ACCATGTCTGT---A-AATATTAAATGAAAGTTACATCAGTATGAGTATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATCTCGCTCGTTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACCCATAGCAAAGATGAGTTATTTGGGATTGCATATCGGTAGATATGAATCGTAGAAA-ACACTCGAATCCAAATACTGAATGAATATTATTCCAAAGCA--TTTGTCTGTTAGTTTCATTAACCGCACAGTCAAACACTA--A--ATGGAGAGATAGNTCATTTGTACTAAGTCCGCACTTATGACACGTTTGCCGGTAAGCATGNGAGTAGGTAANACTTAATATTTTTATAGTGCTCCTACATTTTTCAAGTAAAAGAGGATATTCCTTGCTAAGGGACCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTCTCATCATCGCTCAATCTTAAGCTCAATGATAATTGCTCGGATGTATCTACATAATTTATTGTCTTATGATATATTTCCAAACATGTTTCGAAGGAAAGACGCCCGATTCGATAAANCGTTCATAAATGTGAACTAAGTTGTAATGTCTTAATAAGTCATATATATATCAGGAATAAATCCGCTTTTATTATTCGGGTTGTCAA--TANAACGTATAAG--TATTTA
Reference ( family-6539 ) : ATATATTCTTTATTTCCTCCATT---AGCGGAGAGCGACATA-T--AT-------GTTA-----TTACATAAAGAACATANTAAACATGAATATGAG--CA--GC--AAA-ANCACATA--CAAAA--GTATATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAGAGCGCTACACC-C-TGCACTAACACGCGCAGATACACGCAATTACAGACATACATGAATC--AA--GCGTG-------ATGAG---------GTACA--------AG------------CAGAC------------ACGCATA----------------CAGAC---TGAA---AA--GC------ANA--CACG--CGCATAT----AC--TCACGCCTTCACAG-A--CACA----T-G-A-------CATGAAC--A---CAA-GC-G--------------TGNTTA-ATCA-C-ATACAAAAT--T--AA-AGTA----AACTAAACACAGGCATATTACAATGGTTATTTCTTGTACAATCTTTTCACCGAATAAA---CAGGGAAAA-AA-C-TGAAAAG---AGTT-----TT-A----ACCATGTCTGT---A-AATATTAAATGAAAGTTACATCAGTATGAGTATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATCTCGCTCGTTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACCCATAGCAAAGATGAGTTATTTGGGATTGCATATCGGTAGATATGAATCGTAGAAA-ACACTCGAATCCAAATACTGAATGAATATTATTCCAAAGCA--TTTGTCTGTTAGTTTCATTAACCGCACAGTCAAACACTA--A--ATGGAGAGATAGNTCATTTGTACTAAGTCCGCACTTATGACACGTTTGCCGGTAAGCATGNGAGTAGGTAANACTTAATATTTTTATAGTGCTCCTACATTTTTCAAGTAAAAGAGGATATTCCTTGCTAAGGGACCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTCTCATCATCGCTCAATCTTAAGCTCAATGATAATTGCTCGGATGTATCTACATAATTTATTGTCTTATGATATATTTCCAAACATGTTTCGAAGGAAAGACGCCCGATTCGATAAANCGTTCATAAATGTGAACTAAGTTGTAATGTCTTAATAAGTCATATATATATCAGGAATAAATCCGCTTTTATTATTCGGGTTGTCAA--TANAACGTATAAG--TATTTA
gi|1 : TATATTCTTTATTTCCTCCATT---AGCGGAGAGAGACATA-T--AT-------GTTA-----TTACATAAAGAACATAATAAATATGAACATGAA--TA--GC--AAA-AAAACACA--CAAAA--GTATATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAAAACGCTACACC-CCTGCACTAACACTCGCAGCTATACGCAACTACAGACATACATGAATC--AA--TCGTG-------ATGAG---------GTATA--------AGCAGACACGCATACAGACTGAAAAGGAAACATGCATA----------------TATAC---T--A---AC--GCCTTCACAGA--CACA--TGAATACGAACACAATCATGAATACATAC-ATCCACAGTTTT-A-G-------CATCAACTCA---AAA-AT-G--------------TGTTTA-ATCAAT-ATACAAAAC-----AA-AGTA----AA-TAAACACAGGCATGTTATAATGGTTATTTCTTGTACAATCTTTTCACCGAAAAAAAAACAGGGAAAA-AAAC-TGAAAAG---AGTT-----TT-A----ACCATATCTGT---A-AATATTAAATGAGAGTTACATCAGTATGAATATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATCTCGCTCGTTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTTTTTAGACATAAGTCTTGCTCGGTTTTCATCTGAAGTGTTTTGTTTAACCTATAGCAAAGATGAGTTATTTGGGATTGAATATCCGTAGATATGAATCATAAAAATACACTCGAATCAAAATACTGAATGAATATTATTCCAATGCA--TTTGTCAGTTAGTTTCATTAACCGCATAGCCAAACACTA--A--ATGGAGAGATAGATCATTTGTACTAAGTCCGCATTTATGACACGTTTGCAGGTAAGCATGTGAGTAGGTAAAACTTAATATTTTTACAGTGCTCCTACATTTTTCAATTAAAAGAGGATATTCCTTGCTAAGGGTCCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTGTCATCATCGCTCAATCTTAAGCTCAATGATAATTGCTCGGATGTATCTACATAATTTATTGTCTTATGATATATTTCCAAACATGTTTTGAAGGAAAGACACACGATTCGATAAAGCGTTCATAAATGTGAACTAAGTTGTAATGTCTTAATAAGTTATATATGTATCAGGAATAAACCCTCTTTTATTATACGGGTTGTCAT--TATAACGTATAAGTCTATTTA
gi|10 : ATATTATAATGGTTATTTCTTGTACAATCTTTTCACCGAATGAA---CAGGGAAAA-AA-C-TGAAAAG---AGTT-----TTGA----ACCATATCTGT---A-AATATCAAATGAAAGTTACATCAGTATAGATATA-TA--ACACTTAATATG-------------CGT-----TTACT-GATGA-T------------ATCTCGCTCGTTTGAAGATCAACTCATGAGCATATTGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACCCATAGCAAAGATAATTTATTAGGGGTTGCATAACGGTAGATATGAATCGTAaaagta
gi|11 : TATATTCTTTCTTTCCTCAATT---AACGGAGGGCAACATA-T--TT-------GTTA-----TGACATAAAGAACATATTAAATACGAACATGAG--CA--GC--AAATAACACACA--CCAA----TATATCAATATTAA---ATAGAGTAAAAGGGACAGGA----C----A----CTT-T----ACATTTGAATTGCAAAGCGCTACA---T-TGCACTAACATTCGCAGATACACG--------------CATGAA-CAAAA--GCGTG-------ATGAG---------GTACA--------AG------------CAGAC------------ACATATA----------------CAGAC---TAGA---AA--GC------ATA--CACG--CGCATAT----AC--CCGCGCATTCACAG-A--CACA----TGG-A-------TATCAAC--A---CAA-GC-A--------------T
gi|12 : ACATTCTTTATTTCTTCCGGT---AACTAAGAGTAACATG-T--ATTTTTTATGTTA-----TTATTGAAAGATCACAGTAAACATGAATATGAA--CA--GC---AA-ATCAC--------------GTATCACTATTAA---ATAGAGTAAAACAAACAGGA----C----AATTTCTTAA----ACATTTGAATTGCAGAGCACTACA---T-TGCACTAGCATGCGCAGATACAGTTAATTACAGA-------AAACC--AT--CCATG--------TAAG---------GCACA--------AG------------CAAAC------------ACGCGCT----------------CATAC---TCAC---ACCTTC------ACA--CACG--CGCTTAT----AC--TCACGCCTTCACAC-A--C
gi|13 : ATA-T--AT-------ATTACATAATTATATAAAGAGCATTATAAACAAGAATATGAA--CA--GC---AA-ATCAGAAA--CAAAA--G-ATGTCATTATTAA---ATAGAGCAAAG----GAGAAT---T----A----CTT-A----ACATTTGAATTTCAGAACGCTATA---A-TGCACGAACACGCACAGATACCGGCAAATTCAGTTGTACGT-AATT--AG--GC-TA-------A-AAA---------ATACA--------GG------------CAGAC------------A--TATA-----------------AG--------A---AA--CT------ATA--TATG--TGCATTT----AG--TCACCATTTTTCTA-C--CACA----T-ATA-------CATGAAC--A---TAA-TC-G--------------CGAATA-AGTA-C-ATACAGAg
gi|14 : TTTTCTCCATT---AGCGGAGAGCGACATA-T--AT-------GTTA-----TTACATAAAGAACATATTAAACATGAATATGAG--TA--GC--AAA-A-CAAATATTCAAAA--GTATATTAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----GTT-T----ACATTTGAATTGCAAAGTGCTACACCAC-TGCACTAACACGCACAGATACACGCAATTACAGACATATATGAA-CAAAA--GCGTG-------ATGAT---------GTACA--------AG------------CAGTC------------ACCCATA----------------CAGAC---TAAA---AT--GC------AAA--CAC---TGTATAC----AC--
gi|15 : tattTTAAACCAAAACAAAGATGAGTTAATTGGGATT---------T-GATAC---TTTTAGAAA-ACACTTGAATCCAAATATTGAGCGTATAGTGCTCCAAAGCA--TTTGCCTGTTTGTTTCATTTACCACACAATCAAAGGCTT--A--ATGAAGAAATAGTTCA-TTGTACTTAGTCTGCACTTATGCCACATTTGGCTGTAATCATACAAGTAGACATTGTATAATATTTTCATAGTGCT
gi|16 : aaTATGTCCTCTAGT---AGCGCAGTGCAGCATA-T--TT-------GTTA-----TTACATTAAGAATATAATAGATATTAATATAAG--CG--GC---AA-ACCACATG--CATAA--GGATATC---GTGAAAACATACACTGAAACGTACAGGA----C----A----ATT-ACTGTACATTTGACTTACAGAtg
gi|17 : TATATTCTTTATTACCT---TTCAAATCGGAGAGCAACATC-A--AT-------GTTA-----TCACAC--AGAAAATAGTAAACATGAATATGA---CA--TC--AAA---CACATA--CAAAAATATATATCAATGATAT---AAAGAGCAATGCAT
gi|18 : attTATTATTTGTTTC-TGCAGT---ACCAGGGAGCAGCATACT--TT-------CATA-----TTACATAAAGAACATAGT--ACATGAATGTGAA--CA--GCCGCAA-ATTACATG--CAAGA--AGATA
gi|19 : catgtacA--GCATG-------ACGACTAT------GTACA--------AA------------CAGAC------------GAAGAGA----------------AAGAC---TGGC---AA--AC------AAA--CACG--CACACGT----GC--ACACGCCTTCACAGCA--AACA----T---A-------CAGGAAC--A---CAA-GC-G--------------TGATTg
gi|2 : ATATATTCTTTATTTCCTCCATT---AGCGGAGAGCAACATA-T--AT-------GTTA-----TTACATAAAGAACATATTAAACATGAACATGAG--TA--GC--AAA-AAAACATA--CAAAA--GTTTATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAAAACGCTACACC-CCTGTACTAACACTGGCAGATATACGCAATTACAGACATACATGAATC--AA--GCGTG-------ATGAG---------GTACA--------AG------------CAGAC------------ACGCAAA----------------CAGAC---TGAA---AA--GG------AAA--CATG--CACATAT----AC--TAACGCCTTCACAG-A--CACA----T-G-AA------TATGAAC--A---CAA-AC-A--------------TGAATACAT-A-C-ATCCACAGT--TTTAG-AGTC----AACTCAATGC---TATGTT-TAATCACTAT--CTTGTATAATCTTTTCACCGAATAAA---CAGGGGAAA-AA-C-TGAAAAG---AGTT-----TT-A----ACAATATCTGT---A-AATATTAAATGAAAGTTACATCAGTATGACTATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATCCCGCTCATTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACCCATAGCAAAGATGAGTTATTTGGGATTGCATATCGGTAGATATGAATCGTAGAAA-ACACTCGAATCCAAATGCTGAATGAATATTATTCCAAAGCA--TTTGTCTGTTAGTTTCATTAACCGCACAGTCAAACACTA--A--ATGGAGAGATAGATCATTTGTACTAAGTCCGCACTTATGACACGATTGCCGGTAAGCATGAGAGTAGGTAAAACTTAATATTTTTATAGTGCTCCTACATTTTTCAAGTAAAAGAGGATATTCCTTGCTAAGGGACCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTCTCATCATCGCTCAATCTTAAGTTCAATGATAATTGCTCGAATGTATCTACA-----TATTGTCTTATGATATATTTCCAAACATGTTTTGAAGGAAAGACGCCCGATTCGATAAAACGTTCATAAATGTGAACTAAGTTGTAATGCCTTAATAAGT--TATATATATCAGGAATAAATCAGTTCCAGTCATTCAGTTTGTAAAAGTAAGATATATAAT--GATTTA
gi|20 : AAAATCTGAAACAATGGAGCTTCTCATCATCGCTCAATCCTAAGTTCAATAATAATTGTTCGGATTTATATA
gi|21 : TACAGAA----C----A----GTT-ACTAAACATTTTAATTGCAGACCGCTACA---T-TGCACAAACACGCGC--ATACAa
gi|3 : ATA-TCAAT-------GTTA-----TTACATAAA-----------ACATGAATATGAA--CA--GC--AAA--TCACATA--CACAA--ATAAATGATTATCAA---ATAGAGTAAAGCATAAAAGC----CAATTA----CTG-A----ACGTTCGAATTGCAGA-CACTACAAT-T-T--ATTAACACGCGCAAATACACGCAAT--CAG--ATACCTGAA-CAAAA--GCGTG-------ATAAT---------GTTCA--------AA------------CATAC------------ATACATA----------------CAAAC---TGAC---AA--TC------Ata
gi|3 : ATAAA---CA----AAA-TA-CATTAAAGG---AGTTATTTCTT-ATTTTATCTTTTCTGT---A-AATATTGAATGAATGTTACATCAGTATGAGTATA-TT--GCCGTTATTATG-------------TAC-----TCATT-GCAGAGT------------AT-TCATT-GTTAGTGACTTAATTCATAAACATATTGTGAAATCAATTTATGACTATTTTC--AGACATAAATCTTGATCTATTTTCAGCTGAAGAATTTCATATAAACAAAAACAAAGATAAGTTATTTAAAATTTCATATCG--------GAA----------------GAATCCACATATTGAGTGAATATTACTCTAAAGCA--CATGTCTGTTCGTTTCATTAACCACACACTCAAAGACCA--A--ATGAATATATTCTCCATATGTACCAGGTCCCGACTTATGACACATGTGTCGGTAAATATAAGGGTAGACATTGCTTGATATGTTTATAGTGCCCCTATATGTCTCGAGTAAATGAGGGCAGTTCTCGCTAAGATATCAAATCTTTGAGCTTTTTCGGAGAAAAACAAAATTAAAACTAAAACGACGGAGATTCTCATCATCGGTAAATCTTAAGCTCAGTAATAATTactgaacgttttgtttattcaataggcaaattgaacaaaataataataatacatgtaataataataataaaaaataaatagtgaaaaaaaaacaatcaaaatttagacatcatagtaaactataacgaaacgaaacataaggcactctggtgaaatctgaatgtatatgatatgataaacaaaatacattaaaggagttatttcttattttatcttttctgtaaatattgaatgaatgttacatcagtatgagtatattgccgttattatgtactcattgcagagtattcattgttagtgacttaattcataaacatattgtgaaatcaatttatgactattttcagacataaatcttgatctattttcagctgaagaatttcatataaacaaaaacaaagataagttatttaaaatttcatatcggaagaatccacatattgagtgaatattactctaaagcacatgtctgttcgtttcattaaccacacactcaaagaccaaatgaatatattctccatatgtaccaggtcccgacttatgacacatgtgtcggtaaatataagggtagacattgcttgatatgtttatagtgcccctatatgtctcgagtaaatgagggcagttctcgctaagatatcaaatctttgagctttttcggagaaaaacaaaattaaaactaaaacgacggagattctcatcatcggtaaatcttaagctcagtaataattttcaaacctgtttcgaaggaaagtcacccgattcaatttattattcatgaatatgaactaagttgttgtgtttctaaatcaaatatataagaaataaatccgcttttattattttggttctcaatacaacgtataagtatttatttcgaaaatt
gi|3 : atatcaatgttattacataaaacatgaatatgaacagcaaatcacatacacaaataaatgattatcaaatagagtaaagcataaaagccaattactgaacgttcgaattgcagacactacaatttattaacacgcgcaaatacacgcaatcagatacctgaacaaaagcgtgataatgttcaaacatacatacatacaaactgacaatcaactgaacgttttgtttattcaataggcaaattgaacaaaataataataatacatgtaataataataataaaaaataaatagtgaaaaaaaaacaatcaaaatttagacatcatagtaaactataacgaaacgaaacataaggcactctggtgaaatctgaatgtatatgatatgTAATA-ATTTTCAAACCTGTTTCGAAGGAAAGTCACCCGATTCAATTTATTATTCATGAATATGAACTAAGTTGTTGTGTTTC--TAAATCAAATATATA--AGAAATAAATCCGCTTTTATTATTTTGGTTCTCAA--TACAACGTATAAG--TATTTAttcaaacctgtttcgaaggaaagtcacccgattcaatttattattcatgaatatgaactaagttgttgtgtttctaaatcaaatatataagaaataaatccgcttttattattttggttctcaatacaacgtataagtatttatttcgaaaatt
gi|4 : atatcaatgttattacataaaacatgaatatgaacagcaaatcacatacacaaataaatgattatcaaatagagtaaagcataaaagccaattactgaacgttcgaattgcagacactacaatttattaacacgcgcaaatacacgcaatcagatacctgaacaaaagcgtgataatgttcaaacatacatacatacaaactgacaatcaactgaacgttttgtttattcaataggcaaattgaacaaaataataataatacatgtaataataataataaaaaataaatagtgaaaaaaaaacaatcaaaatttagacatcatagtaaactataacgaaacgaaacataaggcactctggtgaaatctgaatgtatatgatatgataaacaaaatacattaaaggagttatttcttattttatcttttctgtaaatattgaatgaatgttacatcagtatgagtatattgccgttattatgtactcattgcagagtattcattgttagtgacttaattcataaacatattgtgaaatcaatttatgactattttcagacataaatcttgatctattttcagctgaagaatttcatataaacaaaaacaaagataagttatttaaaatttcatatcggaagaatccacatattgagtgaatattactctaaagcacatgtctgttcgtttcattaaccacacactcaaagaccaaatgaatatattctccatatgtaccaggtcccgacttatgacacatgtgtcggtaaatataagggtagacattgcttgatatgtttatagtgcccctatatgtctcgagtaaatgagggcagttctcgctaagatatcaaatctttgagctttttcggagaaaaacaaaattaaaactaaaacgacggagattctcatcatcggtaaatcttaagctcagATATATTCTTTATTTCCTCCATT---AGCGGAGAGCGACATA-T--AT-------GTTA-----TTACATAAAGAACATATTAAACATGAAAAAAAAAACAAAGC--AAA-AAAACATA--CAAAA--GTATATCAATATTAA---ATAGAATAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAAAACGCTACACC-CCTGTACTAACACTCGCAGATATACGCAATTACAGCCATACATGAATC--AA--GCGTG-------ATGAG---------GTACA--------AG------------CAGAC------------ACGCATA----------------CAGAC---TGAA---AA--GG------AAA--CATG--CACATAT----AC--TAACGCCTTCACAG-A--CACA----T-G-AATATATACATCCAC--AGTTTAA-GC-GCCAACTCAAAGATTTGTTTA-ATCA-CTATACAAAAT-----AA-AGTA----AA-TAAACACAGGCATATTATAATGGTTATTTCTTGTACAATCTTTTCACCGAATAAA---AAGGGGGAA-AA-C-TGAAAAT---AGTT-----TT-A----ACCATATCTGT---A-AATATTAAATGAAAGCTACATCAGTATGAATATA-TA--ACACTTAATAAG-------------CAT-----TCACT-GATGA-T------------ATCTCGCTCGTTAGAAGATTAATTCATAAGCATAATGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAGCCCATAGCAAAGATGAGTTATTAGGGATTGCATATCGGTAGATATGAATCGTAGAAA-ACACTCGAATCCAAATACTTAATGAATATTATTCCAAAGAA--TTTGTCTGTTAGTTTCATTAACCGCACAGTCAAACACTA--A--ATGGAGAGATAGATCATTTGTACTAAGTCCACACTTATGACACGTTTGCCGGTAAGCATGAGAGTAGGTAAAACTTAATATTTTTATATTGCTCCTACATTTTTCAAGTAAAAGAGGATATTCCTTTCTAAGAGACCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTCTCATCATCGCTCAATCTTAAGCTCAATGATAATTGCTCGGATGTATCtttcgaaaatt
gi|5 : ATATTCATTATTCCCTCCATT---AGTAGAAGGCGACATA-T--AC-------GTTA-----TTACATAAAGAACATATTAAACATGAACATGAG--TA--GC--AAA-AAT-CATA--CAGAA--ATATATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACACTTGAATTGCAAATCGCTACACCAC-TGCACTAACACTCGCAGATACACGCAATTACAGACATACATGAA-C--AAAAGCGTGATGAGGTATAAGCATACACGCATACAGACTAAAAAG------------CAAAC------------ACGCACATATACTCACTCCTTCACAGACACATGAATATGA--AC------AAAAACATGAATGCATAC----AT--TCACAACTTTA-----------------G-A--------ATCAAC--C---CAAAGCTG--------------TGTTTA-ATCA-CCATACAAAAT-----AA-AATA----AAATAAACACAGGCATATTACAATGGTTATTTCTTGTACAATCTTTTCACCGAGTAAA---CAGGGCAAA-AA-C-TAAACAT---AGTT-----TT-A----ACCATGTCTGT---A-AATATTAAATGAAAGTTAAATCAGTATCACTATA-TA--ACACTTAATATGTATTCACTGGTGACATCTCGCTCGCTAGAAGA-TTAATTCATAAGCATCTCGCTCGCTAGAAGATTAATTCATAAGCATACTATGGAATGAAATTACGACTATTTTC--AGACATAAGCATTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACC-ATAGCAAAGATGAGTTATTTGGGATTGTATATCGGTAGATATGAATTGTAGAAA-ACACTCGAATCCAAATACTGAATGAATATTATTCCAAATCA--TTTGTCTGTTaa
gi|6 : AA-GCTA--------------TGTTTA-ATCA-TTATACAAAAT-----AA-AGTA----AAATAAACACAGGCATATTACGATGGTTATTTCTTGTACAATCTTTTTACCGAGTTAA---CAGGGAAAA-AA-C-TGAAAAG---AGTT-----TT-A----ACCATGTCTGT---A-AATATTAAATGAAAGTTACATCGGTATGAATATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATATCGCTCGTTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTT---AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTTACCAATAGCAAAGATGAGTTATTTGGGATTGCATATCGGTAAATATTAATCGTAGAAA-ACACTCGAATCCAAATACTGAATGAATATTATTCCAAACCATTTTTGTCTGTTAGTTTCATTAACCGCACAATCAAACACTATCATTATGGAGAGATAGTTCATTTGTACAAAGTCCACACTTATGACACGCTTGCCGGTAAGCATACGAGTAGGTAATACTTAATATTTTTgcgtcgtcataccaacaaagactgttagtgtttaaaaata
gi|7 : ccacagttttagcgtcaactaaTATATTCTTTATTTCTTCAATA---AAATGATACCAACATA-T--AT-------GTAA-----TTACATAAAGAACATAGTAAACATGAATATGAG--CA--TC---AA-ATCACATA--CAAAA--ATATATCAATATTAA---AAAGAGTAAAGCATACAGGA----CAATTA----CTT-A----ACATTTGAATTGTAGATCGTTACA---T-TGCACTAACAC-------TAAACGTAATT-TGG-------TAAAT-------GC-------------AG-----------ACA--------CG------------CAGAC-----------------TA-------------------AC---TAGC---AA--GC------ATA--CACG--CGCATAT----AT--TCACGCATTCACAG-A--CACA----TGG-A-------TATGAAC--A---CAA-GC-A--------------TGATTA-GGAA-C-ATACATAGTC-T--AAGAGTA----TACTTAA---AGCTATAT--------TTATTTAATATACAA-----------AATAAA------GCAAAATAA-T-ACAAAAGAAAAGTT-----TT-A----ACTCTGTCTAT---T-AAAATTAAATGAACGTTACATCAGTATGAGTATA-TT--ACAATTAATATG-------------CAT-----TCACT-GAAGA-T------------ATCTCGCCCGTTAGAAGATTAATTCATAAGCGTATTGTCAAATGAATTTACAACCA
gi|8 : aaatTTATTTCATCCATT---AACTGAGAGCAACTTT-TTCAT-------GTTA-----TTACATAAAGAACATAATAAACATGAATATGAA--CA--AC---TA-ATCCCATA--CAAAG--ATATACCATTATTAA---ATAGAATAAAGCATACACGAAAATT----A----CTT-A----ATA-TTGAAATACAGAGCGCTATA
gi|9 : taattgCA-C-A-ACACAATCTT--AA-TGTACATCAGCCAAACAAAATTATATTACAATGGTTAGTTCTTGTTCCATATTTTCGCTCAGAGAA---CAGAGAAAA-AA----GAAAAACAAAATT-------------ATTATTTCTATTTTATAGTTTTGAATGGAAGTCACAACAGTATGAGTGTATTAGTACCCTTATTATG-------------TAT-----TTATT-tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacatcgagaggctgagaatcaacataaagttttggttaactaatatacaacataaagcgaaataatacaagga
Alignments
lowQualScore : 111 111111111 1111 33333 11 2222 1111111 222222222 1111111111111111111111 222222222222222222222222222222222222 1111111111 33333333333333333 111111 3333333333333333 1 44444 1111 1 111 11111 2222222222222 11111 222222222222 22222 1 11 11
lowQualScore : 555 0 2 77 9999999 77777 2 555 33 444 555 33 444 0 555 555555555 6666 3 3333 5 55555 5 3 22 5555 55 2 1111111 000000000 9999999999999999999999 999999999999999999999999999999999999 666 999999 1111111111 1 55 55 8888 55 0 77777 22222222222222222 1 222222 4 2222222222222222 1 5 1 5 5 1 00000 5 2222 1 0 11 777 4 666 555 11111 4 9999 2 777 4 2 4 66 4444444444444 11111 4 0 5 555555555555 77 4 0 5 77 99999 1 1 1 77777 7 0 0 1 7 2 7 3 88 1 88
lowQualScore : ... . . .. ....... ..... . ... .. ... ... .. ... . ... ......... .... . .... . ..... . . .. .... .. . ....... ......... ...................... .................................... ... ...... .......... . .. .. .... .. . ..... ................. . ...... . ................ . . . . . . ..... . .... . . .. ... . ... ... ..... . .... . ... . . . .. ............. ..... . . . ............ .. . . . .. ..... . . . ..... . . . . . . . . .. . ..
lowQualScore : 888 7 9 99 3333333 11111 0 555 99 111 666 99 444 7 444 222222222 5555 1 1111 8 55555 9 3 33 2222 00 0 8888888 999999999 3333333333333333333333 222222222222222222222222222222222222 444 000000 2222222222 0 55 55 5555 55 1 00000 55555555555555555 0 000000 4 1111111111111111 0 7 4 0 0 0 44444 7 1111 4 7 22 888 4 222 666 11111 4 4444 7 888 4 7 4 11 4444444444444 11111 4 8 0 666666666666 99 5 1 7 99 33333 0 0 0 55555 3 7 7 0 3 0 3 7 33 0 33
consensus : ATATATTCTTTATTTCCTCCATT---AGCGGAGAGCGACATA-T--AT-------GTTA-----TTACATAAAGAACATANTAAACATGAATATGAG--CA--GC--AAA-ANCACATA--CAAAA--GTATATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAGAGCGCTACACC-C-TGCACTAACACGCGCAGATACACGCAATTACAGACATACATGAATC--AA--GCGTG-------ATGAG---------GTACA--------AG------------CAGAC------------ACGCATA----------------CAGAC---TGAA---AA--GC------ANA--CACG--CGCATAT----AC--TCACGCCTTCACAG-A--CACA----T-G-A-------CATCAAC--A---CAA-GC-G--------------TGNTTA-ATCA-C-ATACANAAT--T--AA-AGTA----AACTAAACACAGGCATATTACAATGGTTATTTCTTGTACAATCTTTTCACCGAATAAA---CAGGGAAAA-AA-C-TGAAAAG---AGTT-----TT-A----ACCATGTCTGT---A-AATATTAAATGAAAGTTACATCAGTATGAGTATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATCTCGCTCGTTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACCCATAGCAAAGATGAGTTATTTGGGATTGCATATCGGTAGATATGAATCGTAGAAA-ACACTCGAATCCAAATACTGAATGAATATTATTCCAAAGCA--TTTGTCTGTTAGTTTCATTAACCGCACAGTCAAACACTA--A--ATGGAGAGATAGNTCATTTGTACTAAGTCCGCACTTATGACACGTTTGCCGGTAAGCATGNGAGTAGGTAANACTTAATATTTTTATAGTGCTCCTACATTTTTCAAGTAAAAGAGGATATTCCTTGCTAAGGGACCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTCTCATCATCGCTCAATCTTAAGCTCAATGATAATTGCTCGGATGTATCTACATAATTTATTGTCTTATGATATATTTCCAAACATGTTTCGAAGGAAAGACGCCCGATTCGATAAANCGTTCATAAATGTGAACTAAGTTGTAATGTCTTAATAAGTCATATATATATCAGGAATAAATCCGCTTTTATTATTCGGGTTGTCAA--TANAACGTATAAG--TATTTA
Reference ( family-6539 ) : ATATATTCTTTATTTCCTCCATT---AGCGGAGAGCGACATA-T--AT-------GTTA-----TTACATAAAGAACATANTAAACATGAATATGAG--CA--GC--AAA-ANCACATA--CAAAA--GTATATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAGAGCGCTACACC-C-TGCACTAACACGCGCAGATACACGCAATTACAGACATACATGAATC--AA--GCGTG-------ATGAG---------GTACA--------AG------------CAGAC------------ACGCATA----------------CAGAC---TGAA---AA--GC------ANA--CACG--CGCATAT----AC--TCACGCCTTCACAG-A--CACA----T-G-A-------CATNAAC--A---CAA-GC-G--------------TGNTTA-ATCA-C-ATACANAAT--T--AA-AGTA----AACTAAACACAGGCATATTACAATGGTTATTTCTTGTACAATCTTTTCACCGAATAAA---CAGGGAAAA-AA-C-TGAAAAG---AGTT-----TT-A----ACCATGTCTGT---A-AATATTAAATGAAAGTTACATCAGTATGAGTATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATCTCGCTCGTTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACCCATAGCAAAGATGAGTTATTTGGGATTGCATATCGGTAGATATGAATCGTAGAAA-ACACTCGAATCCAAATACTGAATGAATATTATTCCAAAGCA--TTTGTCTGTTAGTTTCATTAACCGCACAGTCAAACACTA--A--ATGGAGAGATAGNTCATTTGTACTAAGTCCGCACTTATGACACGTTTGCCGGTAAGCATGNGAGTAGGTAANACTTAATATTTTTATAGTGCTCCTACATTTTTCAAGTAAAAGAGGATATTCCTTGCTAAGGGACCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTCTCATCATCGCTCAATCTTAAGCTCAATGATAATTGCTCGGATGTATCTACATAATTTATTGTCTTATGATATATTTCCAAACATGTTTCGAAGGAAAGACGCCCGATTCGATAAANCGTTCATAAATGTGAACTAAGTTGTAATGTCTTAATAAGTCATATATATATCAGGAATAAATCCGCTTTTATTATTCGGGTTGTCAA--TANAACGTATAAG--TATTTA
gi|1 : TATATTCTTTATTTCCTCCATT---AGCGGAGAGAGACATA-T--AT-------GTTA-----TTACATAAAGAACATAATAAATATGAACATGAA--TA--GC--AAA-AAAACACA--CAAAA--GTATATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAAAACGCTACACC-CCTGCACTAACACTCGCAGCTATACGCAACTACAGACATACATGAATC--AA--TCGTG-------ATGAG---------GTATA--------AGCAGACACGCATACAGACTGAAAAGGAAACATGCATA----------------TATAC---T--A---AC--GCCTTCACAGA--CACA--TGAATACGAACACAATCATGAATACATAC-ATCCACAGTTTT-A-G-------CATCAACTCA---AAA-AT-G--------------TGTTTA-ATCAAT-ATACAAAAC-----AA-AGTA----AA-TAAACACAGGCATGTTATAATGGTTATTTCTTGTACAATCTTTTCACCGAAAAAAAAACAGGGAAAA-AAAC-TGAAAAG---AGTT-----TT-A----ACCATATCTGT---A-AATATTAAATGAGAGTTACATCAGTATGAATATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATCTCGCTCGTTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTTTTTAGACATAAGTCTTGCTCGGTTTTCATCTGAAGTGTTTTGTTTAACCTATAGCAAAGATGAGTTATTTGGGATTGAATATCCGTAGATATGAATCATAAAAATACACTCGAATCAAAATACTGAATGAATATTATTCCAATGCA--TTTGTCAGTTAGTTTCATTAACCGCATAGCCAAACACTA--A--ATGGAGAGATAGATCATTTGTACTAAGTCCGCATTTATGACACGTTTGCAGGTAAGCATGTGAGTAGGTAAAACTTAATATTTTTACAGTGCTCCTACATTTTTCAATTAAAAGAGGATATTCCTTGCTAAGGGTCCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTGTCATCATCGCTCAATCTTAAGCTCAATGATAATTGCTCGGATGTATCTACATAATTTATTGTCTTATGATATATTTCCAAACATGTTTTGAAGGAAAGACACACGATTCGATAAAGCGTTCATAAATGTGAACTAAGTTGTAATGTCTTAATAAGTTATATATGTATCAGGAATAAACCCTCTTTTATTATACGGGTTGTCAT--TATAACGTATAAGTCTATTTA
gi|10 : ATATTATAATGGTTATTTCTTGTACAATCTTTTCACCGAATGAA---CAGGGAAAA-AA-C-TGAAAAG---AGTT-----TTGA----ACCATATCTGT---A-AATATCAAATGAAAGTTACATCAGTATAGATATA-TA--ACACTTAATATG-------------CGT-----TTACT-GATGA-T------------ATCTCGCTCGTTTGAAGATCAACTCATGAGCATATTGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACCCATAGCAAAGATAATTTATTAGGGGTTGCATAACGGTAGATATGAATCGTAaaagta
gi|11 : TATATTCTTTCTTTCCTCAATT---AACGGAGGGCAACATA-T--TT-------GTTA-----TGACATAAAGAACATATTAAATACGAACATGAG--CA--GC--AAATAACACACA--CCAA----TATATCAATATTAA---ATAGAGTAAAAGGGACAGGA----C----A----CTT-T----ACATTTGAATTGCAAAGCGCTACA---T-TGCACTAACATTCGCAGATACACG--------------CATGAA-CAAAA--GCGTG-------ATGAG---------GTACA--------AG------------CAGAC------------ACATATA----------------CAGAC---TAGA---AA--GC------ATA--CACG--CGCATAT----AC--CCGCGCATTCACAG-A--CACA----TGG-A-------TATCAAC--A---CAA-GC-A--------------T
gi|12 : ACATTCTTTATTTCTTCCGGT---AACTAAGAGTAACATG-T--ATTTTTTATGTTA-----TTATTGAAAGATCACAGTAAACATGAATATGAA--CA--GC---AA-ATCAC--------------GTATCACTATTAA---ATAGAGTAAAACAAACAGGA----C----AATTTCTTAA----ACATTTGAATTGCAGAGCACTACA---T-TGCACTAGCATGCGCAGATACAGTTAATTACAGA-------AAACC--AT--CCATG--------TAAG---------GCACA--------AG------------CAAAC------------ACGCGCT----------------CATAC---TCAC---ACCTTC------ACA--CACG--CGCTTAT----AC--TCACGCCTTCACAC-A--C
gi|13 : ATA-T--AT-------ATTACATAATTATATAAAGAGCATTATAAACAAGAATATGAA--CA--GC---AA-ATCAGAAA--CAAAA--G-ATGTCATTATTAA---ATAGAGCAAAG----GAGAAT---T----A----CTT-A----ACATTTGAATTTCAGAACGCTATA---A-TGCACGAACACGCACAGATACCGGCAAATTCAGTTGTACGT-AATT--AG--GC-TA-------A-AAA---------ATACA--------GG------------CAGAC------------A--TATA-----------------AG--------A---AA--CT------ATA--TATG--TGCATTT----AG--TCACCATTTTTCTA-C--CACA----T-ATA-------CATGAAC--A---TAA-TC-G--------------CGAATA-AGTA-C-ATACAGAg
gi|14 : TTTTCTCCATT---AGCGGAGAGCGACATA-T--AT-------GTTA-----TTACATAAAGAACATATTAAACATGAATATGAG--TA--GC--AAA-A-CAAATATTCAAAA--GTATATTAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----GTT-T----ACATTTGAATTGCAAAGTGCTACACCAC-TGCACTAACACGCACAGATACACGCAATTACAGACATATATGAA-CAAAA--GCGTG-------ATGAT---------GTACA--------AG------------CAGTC------------ACCCATA----------------CAGAC---TAAA---AT--GC------AAA--CAC---TGTATAC----AC--
gi|15 : tattTTAAACCAAAACAAAGATGAGTTAATTGGGATT---------T-GATAC---TTTTAGAAA-ACACTTGAATCCAAATATTGAGCGTATAGTGCTCCAAAGCA--TTTGCCTGTTTGTTTCATTTACCACACAATCAAAGGCTT--A--ATGAAGAAATAGTTCA-TTGTACTTAGTCTGCACTTATGCCACATTTGGCTGTAATCATACAAGTAGACATTGTATAATATTTTCATAGTGCT
gi|16 : aaTATGTCCTCTAGT---AGCGCAGTGCAGCATA-T--TT-------GTTA-----TTACATTAAGAATATAATAGATATTAATATAAG--CG--GC---AA-ACCACATG--CATAA--GGATATC---GTGAAAACATACACTGAAACGTACAGGA----C----A----ATT-ACTGTACATTTGACTTACAGAtg
gi|17 : TATATTCTTTATTACCT---TTCAAATCGGAGAGCAACATC-A--AT-------GTTA-----TCACAC--AGAAAATAGTAAACATGAATATGA---CA--TC--AAA---CACATA--CAAAAATATATATCAATGATAT---AAAGAGCAATGCAT
gi|18 : attTATTATTTGTTTC-TGCAGT---ACCAGGGAGCAGCATACT--TT-------CATA-----TTACATAAAGAACATAGT--ACATGAATGTGAA--CA--GCCGCAA-ATTACATG--CAAGA--AGATA
gi|19 : catgtacA--GCATG-------ACGACTAT------GTACA--------AA------------CAGAC------------GAAGAGA----------------AAGAC---TGGC---AA--AC------AAA--CACG--CACACGT----GC--ACACGCCTTCACAGCA--AACA----T---A-------CAGGAAC--A---CAA-GC-G--------------TGATTg
gi|2 : ATATATTCTTTATTTCCTCCATT---AGCGGAGAGCAACATA-T--AT-------GTTA-----TTACATAAAGAACATATTAAACATGAACATGAG--TA--GC--AAA-AAAACATA--CAAAA--GTTTATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAAAACGCTACACC-CCTGTACTAACACTGGCAGATATACGCAATTACAGACATACATGAATC--AA--GCGTG-------ATGAG---------GTACA--------AG------------CAGAC------------ACGCAAA----------------CAGAC---TGAA---AA--GG------AAA--CATG--CACATAT----AC--TAACGCCTTCACAG-A--CACA----T-G-AA------TATGAAC--A---CAA-AC-A--------------TGAATACAT-A-C-ATCCACAGT--TTTAG-AGTC----AACTCAATGC---TATGTT-TAATCACTAT--CTTGTATAATCTTTTCACCGAATAAA---CAGGGGAAA-AA-C-TGAAAAG---AGTT-----TT-A----ACAATATCTGT---A-AATATTAAATGAAAGTTACATCAGTATGACTATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATCCCGCTCATTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACCCATAGCAAAGATGAGTTATTTGGGATTGCATATCGGTAGATATGAATCGTAGAAA-ACACTCGAATCCAAATGCTGAATGAATATTATTCCAAAGCA--TTTGTCTGTTAGTTTCATTAACCGCACAGTCAAACACTA--A--ATGGAGAGATAGATCATTTGTACTAAGTCCGCACTTATGACACGATTGCCGGTAAGCATGAGAGTAGGTAAAACTTAATATTTTTATAGTGCTCCTACATTTTTCAAGTAAAAGAGGATATTCCTTGCTAAGGGACCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTCTCATCATCGCTCAATCTTAAGTTCAATGATAATTGCTCGAATGTATCTACA-----TATTGTCTTATGATATATTTCCAAACATGTTTTGAAGGAAAGACGCCCGATTCGATAAAACGTTCATAAATGTGAACTAAGTTGTAATGCCTTAATAAGT--TATATATATCAGGAATAAATCAGTTCCAGTCATTCAGTTTGTAAAAGTAAGATATATAAT--GATTTA
gi|20 : AAAATCTGAAACAATGGAGCTTCTCATCATCGCTCAATCCTAAGTTCAATAATAATTGTTCGGATTTATATA
gi|21 : TACAGAA----C----A----GTT-ACTAAACATTTTAATTGCAGACCGCTACA---T-TGCACAAACACGCGC--ATACAa
gi|3 : ATA-TCAAT-------GTTA-----TTACATAAA-----------ACATGAATATGAA--CA--GC--AAA--TCACATA--CACAA--ATAAATGATTATCAA---ATAGAGTAAAGCATAAAAGC----CAATTA----CTG-A----ACGTTCGAATTGCAGA-CACTACAAT-T-T--ATTAACACGCGCAAATACACGCAAT--CAG--ATACCTGAA-CAAAA--GCGTG-------ATAAT---------GTTCA--------AA------------CATAC------------ATACATA----------------CAAAC---TGAC---AA--TC------Ata
gi|3 : ATAAA---CA----AAA-TA-CATTAAAGG---AGTTATTTCTT-ATTTTATCTTTTCTGT---A-AATATTGAATGAATGTTACATCAGTATGAGTATA-TT--GCCGTTATTATG-------------TAC-----TCATT-GCAGAGT------------AT-TCATT-GTTAGTGACTTAATTCATAAACATATTGTGAAATCAATTTATGACTATTTTC--AGACATAAATCTTGATCTATTTTCAGCTGAAGAATTTCATATAAACAAAAACAAAGATAAGTTATTTAAAATTTCATATCG--------GAA----------------GAATCCACATATTGAGTGAATATTACTCTAAAGCA--CATGTCTGTTCGTTTCATTAACCACACACTCAAAGACCA--A--ATGAATATATTCTCCATATGTACCAGGTCCCGACTTATGACACATGTGTCGGTAAATATAAGGGTAGACATTGCTTGATATGTTTATAGTGCCCCTATATGTCTCGAGTAAATGAGGGCAGTTCTCGCTAAGATATCAAATCTTTGAGCTTTTTCGGAGAAAAACAAAATTAAAACTAAAACGACGGAGATTCTCATCATCGGTAAATCTTAAGCTCAGTAATAATTactgaacgttttgtttattcaataggcaaattgaacaaaataataataatacatgtaataataataataaaaaataaatagtgaaaaaaaaacaatcaaaatttagacatcatagtaaactataacgaaacgaaacataaggcactctggtgaaatctgaatgtatatgatatgataaacaaaatacattaaaggagttatttcttattttatcttttctgtaaatattgaatgaatgttacatcagtatgagtatattgccgttattatgtactcattgcagagtattcattgttagtgacttaattcataaacatattgtgaaatcaatttatgactattttcagacataaatcttgatctattttcagctgaagaatttcatataaacaaaaacaaagataagttatttaaaatttcatatcggaagaatccacatattgagtgaatattactctaaagcacatgtctgttcgtttcattaaccacacactcaaagaccaaatgaatatattctccatatgtaccaggtcccgacttatgacacatgtgtcggtaaatataagggtagacattgcttgatatgtttatagtgcccctatatgtctcgagtaaatgagggcagttctcgctaagatatcaaatctttgagctttttcggagaaaaacaaaattaaaactaaaacgacggagattctcatcatcggtaaatcttaagctcagtaataattttcaaacctgtttcgaaggaaagtcacccgattcaatttattattcatgaatatgaactaagttgttgtgtttctaaatcaaatatataagaaataaatccgcttttattattttggttctcaatacaacgtataagtatttatttcgaaaatt
gi|3 : atatcaatgttattacataaaacatgaatatgaacagcaaatcacatacacaaataaatgattatcaaatagagtaaagcataaaagccaattactgaacgttcgaattgcagacactacaatttattaacacgcgcaaatacacgcaatcagatacctgaacaaaagcgtgataatgttcaaacatacatacatacaaactgacaatcaactgaacgttttgtttattcaataggcaaattgaacaaaataataataatacatgtaataataataataaaaaataaatagtgaaaaaaaaacaatcaaaatttagacatcatagtaaactataacgaaacgaaacataaggcactctggtgaaatctgaatgtatatgatatgTAATA-ATTTTCAAACCTGTTTCGAAGGAAAGTCACCCGATTCAATTTATTATTCATGAATATGAACTAAGTTGTTGTGTTTC--TAAATCAAATATATA--AGAAATAAATCCGCTTTTATTATTTTGGTTCTCAA--TACAACGTATAAG--TATTTAttcaaacctgtttcgaaggaaagtcacccgattcaatttattattcatgaatatgaactaagttgttgtgtttctaaatcaaatatataagaaataaatccgcttttattattttggttctcaatacaacgtataagtatttatttcgaaaatt
gi|4 : atatcaatgttattacataaaacatgaatatgaacagcaaatcacatacacaaataaatgattatcaaatagagtaaagcataaaagccaattactgaacgttcgaattgcagacactacaatttattaacacgcgcaaatacacgcaatcagatacctgaacaaaagcgtgataatgttcaaacatacatacatacaaactgacaatcaactgaacgttttgtttattcaataggcaaattgaacaaaataataataatacatgtaataataataataaaaaataaatagtgaaaaaaaaacaatcaaaatttagacatcatagtaaactataacgaaacgaaacataaggcactctggtgaaatctgaatgtatatgatatgataaacaaaatacattaaaggagttatttcttattttatcttttctgtaaatattgaatgaatgttacatcagtatgagtatattgccgttattatgtactcattgcagagtattcattgttagtgacttaattcataaacatattgtgaaatcaatttatgactattttcagacataaatcttgatctattttcagctgaagaatttcatataaacaaaaacaaagataagttatttaaaatttcatatcggaagaatccacatattgagtgaatattactctaaagcacatgtctgttcgtttcattaaccacacactcaaagaccaaatgaatatattctccatatgtaccaggtcccgacttatgacacatgtgtcggtaaatataagggtagacattgcttgatatgtttatagtgcccctatatgtctcgagtaaatgagggcagttctcgctaagatatcaaatctttgagctttttcggagaaaaacaaaattaaaactaaaacgacggagattctcatcatcggtaaatcttaagctcagATATATTCTTTATTTCCTCCATT---AGCGGAGAGCGACATA-T--AT-------GTTA-----TTACATAAAGAACATATTAAACATGAAAAAAAAAACAAAGC--AAA-AAAACATA--CAAAA--GTATATCAATATTAA---ATAGAATAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAAAACGCTACACC-CCTGTACTAACACTCGCAGATATACGCAATTACAGCCATACATGAATC--AA--GCGTG-------ATGAG---------GTACA--------AG------------CAGAC------------ACGCATA----------------CAGAC---TGAA---AA--GG------AAA--CATG--CACATAT----AC--TAACGCCTTCACAG-A--CACA----T-G-AATATATACATCCAC--AGTTTAA-GC-GCCAACTCAAAGATTTGTTTA-ATCA-CTATACAAAAT-----AA-AGTA----AA-TAAACACAGGCATATTATAATGGTTATTTCTTGTACAATCTTTTCACCGAATAAA---AAGGGGGAA-AA-C-TGAAAAT---AGTT-----TT-A----ACCATATCTGT---A-AATATTAAATGAAAGCTACATCAGTATGAATATA-TA--ACACTTAATAAG-------------CAT-----TCACT-GATGA-T------------ATCTCGCTCGTTAGAAGATTAATTCATAAGCATAATGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAGCCCATAGCAAAGATGAGTTATTAGGGATTGCATATCGGTAGATATGAATCGTAGAAA-ACACTCGAATCCAAATACTTAATGAATATTATTCCAAAGAA--TTTGTCTGTTAGTTTCATTAACCGCACAGTCAAACACTA--A--ATGGAGAGATAGATCATTTGTACTAAGTCCACACTTATGACACGTTTGCCGGTAAGCATGAGAGTAGGTAAAACTTAATATTTTTATATTGCTCCTACATTTTTCAAGTAAAAGAGGATATTCCTTTCTAAGAGACCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTCTCATCATCGCTCAATCTTAAGCTCAATGATAATTGCTCGGATGTATCtttcgaaaatt
gi|5 : ATATTCATTATTCCCTCCATT---AGTAGAAGGCGACATA-T--AC-------GTTA-----TTACATAAAGAACATATTAAACATGAACATGAG--TA--GC--AAA-AAT-CATA--CAGAA--ATATATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACACTTGAATTGCAAATCGCTACACCAC-TGCACTAACACTCGCAGATACACGCAATTACAGACATACATGAA-C--AAAAGCGTGATGAGGTATAAGCATACACGCATACAGACTAAAAAG------------CAAAC------------ACGCACATATACTCACTCCTTCACAGACACATGAATATGA--AC------AAAAACATGAATGCATAC----AT--TCACAACTTTA-----------------G-A--------ATCAAC--C---CAAAGCTG--------------TGTTTA-ATCA-CCATACAAAAT-----AA-AATA----AAATAAACACAGGCATATTACAATGGTTATTTCTTGTACAATCTTTTCACCGAGTAAA---CAGGGCAAA-AA-C-TAAACAT---AGTT-----TT-A----ACCATGTCTGT---A-AATATTAAATGAAAGTTAAATCAGTATCACTATA-TA--ACACTTAATATGTATTCACTGGTGACATCTCGCTCGCTAGAAGA-TTAATTCATAAGCATCTCGCTCGCTAGAAGATTAATTCATAAGCATACTATGGAATGAAATTACGACTATTTTC--AGACATAAGCATTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACC-ATAGCAAAGATGAGTTATTTGGGATTGTATATCGGTAGATATGAATTGTAGAAA-ACACTCGAATCCAAATACTGAATGAATATTATTCCAAATCA--TTTGTCTGTTaa
gi|6 : -------CGTCAACT-A---AAA-GCTA--------------TGTTTA-ATCA-TTATACAAAAT-----AA-AGTA----AAATAAACACAGGCATATTACGATGGTTATTTCTTGTACAATCTTTTTACCGAGTTAA---CAGGGAAAA-AA-C-TGAAAAG---AGTT-----TT-A----ACCATGTCTGT---A-AATATTAAATGAAAGTTACATCGGTATGAATATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATATCGCTCGTTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTT---AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTTACCAATAGCAAAGATGAGTTATTTGGGATTGCATATCGGTAAATATTAATCGTAGAAA-ACACTCGAATCCAAATACTGAATGAATATTATTCCAAACCATTTTTGTCTGTTAGTTTCATTAACCGCACAATCAAACACTATCATTATGGAGAGATAGTTCATTTGTACAAAGTCCACACTTATGACACGCTTGCCGGTAAGCATACGAGTAGGTAATACTTAATATTTTTgcgtcgtcataccaacaaagactgttagtgtttaaaaata
gi|7 : ccacagttttagTATATTCTTTATTTCTTCAATA---AAATGATACCAACATA-T--AT-------GTAA-----TTACATAAAGAACATAGTAAACATGAATATGAG--CA--TC---AA-ATCACATA--CAAAA--ATATATCAATATTAA---AAAGAGTAAAGCATACAGGA----CAATTA----CTT-A----ACATTTGAATTGTAGATCGTTACA---T-TGCACTAACAC-------TAAACGTAATT-TGG-------TAAAT-------GC-------------AG-----------ACA--------CG------------CAGAC-----------------TA-------------------AC---TAGC---AA--GC------ATA--CACG--CGCATAT----AT--TCACGCATTCACAG-A--CACA----TGG-A-------TATGAAC--A---CAA-GC-A--------------TGATTA-GGAA-C-ATACATAGTC-T--AAGAGTA----TACTTAA---AGCTATAT--------TTATTTAATATACAA-----------AATAAA------GCAAAATAA-T-ACAAAAGAAAAGTT-----TT-A----ACTCTGTCTAT---T-AAAATTAAATGAACGTTACATCAGTATGAGTATA-TT--ACAATTAATATG-------------CAT-----TCACT-GAAGA-T------------ATCTCGCCCGTTAGAAGATTAATTCATAAGCGTATTGTCAAATGAATTTACAACCA
gi|8 : aaatTTATTTCATCCATT---AACTGAGAGCAACTTT-TTCAT-------GTTA-----TTACATAAAGAACATAATAAACATGAATATGAA--CA--AC---TA-ATCCCATA--CAAAG--ATATACCATTATTAA---ATAGAATAAAGCATACACGAAAATT----A----CTT-A----ATA-TTGAAATACAGAGCGCTATA
gi|9 : taattgCA-C-A-ACACAATCTT--AA-TGTACATCAGCCAAACAAAATTATATTACAATGGTTAGTTCTTGTTCCATATTTTCGCTCAGAGAA---CAGAGAAAA-AA----GAAAAACAAAATT-------------ATTATTTCTATTTTATAGTTTTGAATGGAAGTCACAACAGTATGAGTGTATTAGTACCCTTATTATG-------------TAT-----TTATT-tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacatcgagaggctgagaatcaacataaagttttggttaactaatatacaacataaagcgaaataatacaagga
Alignments
lowQualScore : 111 111111111 1111 33333 11 2222 1111111 222222222 1111111111111111111111 222222222222222222222222222222222222 1111111111 33333333333333333 111111 3333333333333333 1 44444 1111 1 111 11111 2222222222222 11111 222222222222 22222 1 11 11
lowQualScore : 555 0 2 77 9999999 77777 2 555 33 444 555 33 444 0 555 555555555 6666 3 3333 5 55555 5 3 22 5555 55 2 1111111 000000000 9999999999999999999999 999999999999999999999999999999999999 666 999999 1111111111 1 55 55 8888 55 0 77777 22222222222222222 1 222222 4 2222222222222222 1 5 1 5 5 1 00000 5 2222 1 0 11 777 4 666 555 11111 4 9999 2 777 4 2 4 66 4444444444444 11111 4 0 5 555555555555 77 4 0 5 77 99999 1 1 1 77777 7 0 0 1 7 2 7 3 88 1 88
lowQualScore : ... . . .. ....... ..... . ... .. ... ... .. ... . ... ......... .... . .... . ..... . . .. .... .. . ....... ......... ...................... .................................... ... ...... .......... . .. .. .... .. . ..... ................. . ...... . ................ . . . . . . ..... . .... . . .. ... . ... ... ..... . .... . ... . . . .. ............. ..... . . . ............ .. . . . .. ..... . . . ..... . . . . . . . . .. . ..
lowQualScore : 888 7 9 99 3333333 11111 0 555 99 111 666 99 444 7 444 222222222 5555 1 1111 8 55555 9 3 33 2222 00 0 8888888 999999999 3333333333333333333333 222222222222222222222222222222222222 444 000000 2222222222 0 55 55 5555 55 1 00000 55555555555555555 1 000000 4 1111111111111111 0 7 4 0 0 0 44444 7 1111 4 7 22 888 4 222 666 11111 4 4444 7 888 4 7 4 11 4444444444444 11111 4 8 0 666666666666 99 5 1 7 99 33333 0 0 0 55555 3 7 7 0 3 0 3 7 33 0 33
consensus : ATATATTCTTTATTTCCTCCATT---AGCGGAGAGCGACATA-T--AT-------GTTA-----TTACATAAAGAACATANTAAACATGAATATGAG--CA--GC--AAA-ANCACATA--CAAAA--GTATATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAGAGCGCTACACC-C-TGCACTAACACGCGCAGATACACGCAATTACAGACATACATGAATC--AA--GCGTG-------ATGAG---------GTACA--------AG------------CAGAC------------ACGCATA----------------CAGAC---TGAA---AA--GC------ANA--CACG--CGCATAT----AC--TCACGCCTTCACAG-A--CACA----T-G-A-------CATCAAC--A---CAA-GC-G--------------TGNTTA-ATCA-C-ATACANAAT--T--AA-AGTA----AACTAAACACAGGCATATTACAATGGTTATTTCTTGTACAATCTTTTCACCGAATAAA---CAGGGAAAA-AA-C-TGAAAAG---AGTT-----TT-A----ACCATGTCTGT---A-AATATTAAATGAAAGTTACATCAGTATGAGTATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATCTCGCTCGTTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACCCATAGCAAAGATGAGTTATTTGGGATTGCATATCGGTAGATATGAATCGTAGAAA-ACACTCGAATCCAAATACTGAATGAATATTATTCCAAAGCA--TTTGTCTGTTAGTTTCATTAACCGCACAGTCAAACACTA--A--ATGGAGAGATAGNTCATTTGTACTAAGTCCGCACTTATGACACGTTTGCCGGTAAGCATGNGAGTAGGTAANACTTAATATTTTTATAGTGCTCCTACATTTTTCAAGTAAAAGAGGATATTCCTTGCTAAGGGACCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTCTCATCATCGCTCAATCTTAAGCTCAATGATAATTGCTCGGATGTATCTACATAATTTATTGTCTTATGATATATTTCCAAACATGTTTCGAAGGAAAGACGCCCGATTCGATAAANCGTTCATAAATGTGAACTAAGTTGTAATGTCTTAATAAGTCATATATATATCAGGAATAAATCCGCTTTTATTATTCGGGTTGTCAA--TANAACGTATAAG--TATTTA
Reference ( family-6539 ) : ATATATTCTTTATTTCCTCCATT---AGCGGAGAGCGACATA-T--AT-------GTTA-----TTACATAAAGAACATANTAAACATGAATATGAG--CA--GC--AAA-ANCACATA--CAAAA--GTATATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAGAGCGCTACACC-C-TGCACTAACACGCGCAGATACACGCAATTACAGACATACATGAATC--AA--GCGTG-------ATGAG---------GTACA--------AG------------CAGAC------------ACGCATA----------------CAGAC---TGAA---AA--GC------ANA--CACG--CGCATAT----AC--TCACGCCTTCACAG-A--CACA----T-G-A-------CATCAAC--A---CAA-GC-G--------------TGNTTA-ATCA-C-ATACANAAT--T--AA-AGTA----AACTAAACACAGGCATATTACAATGGTTATTTCTTGTACAATCTTTTCACCGAATAAA---CAGGGAAAA-AA-C-TGAAAAG---AGTT-----TT-A----ACCATGTCTGT---A-AATATTAAATGAAAGTTACATCAGTATGAGTATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATCTCGCTCGTTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACCCATAGCAAAGATGAGTTATTTGGGATTGCATATCGGTAGATATGAATCGTAGAAA-ACACTCGAATCCAAATACTGAATGAATATTATTCCAAAGCA--TTTGTCTGTTAGTTTCATTAACCGCACAGTCAAACACTA--A--ATGGAGAGATAGNTCATTTGTACTAAGTCCGCACTTATGACACGTTTGCCGGTAAGCATGNGAGTAGGTAANACTTAATATTTTTATAGTGCTCCTACATTTTTCAAGTAAAAGAGGATATTCCTTGCTAAGGGACCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTCTCATCATCGCTCAATCTTAAGCTCAATGATAATTGCTCGGATGTATCTACATAATTTATTGTCTTATGATATATTTCCAAACATGTTTCGAAGGAAAGACGCCCGATTCGATAAANCGTTCATAAATGTGAACTAAGTTGTAATGTCTTAATAAGTCATATATATATCAGGAATAAATCCGCTTTTATTATTCGGGTTGTCAA--TANAACGTATAAG--TATTTA
gi|1 : TATATTCTTTATTTCCTCCATT---AGCGGAGAGAGACATA-T--AT-------GTTA-----TTACATAAAGAACATAATAAATATGAACATGAA--TA--GC--AAA-AAAACACA--CAAAA--GTATATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAAAACGCTACACC-CCTGCACTAACACTCGCAGCTATACGCAACTACAGACATACATGAATC--AA--TCGTG-------ATGAG---------GTATA--------AGCAGACACGCATACAGACTGAAAAGGAAACATGCATA----------------TATAC---T--A---AC--GCCTTCACAGA--CACA--TGAATACGAACACAATCATGAATACATAC-ATCCACAGTTTT-A-G-------CATCAACTCA---AAA-AT-G--------------TGTTTA-ATCAAT-ATACAAAAC-----AA-AGTA----AA-TAAACACAGGCATGTTATAATGGTTATTTCTTGTACAATCTTTTCACCGAAAAAAAAACAGGGAAAA-AAAC-TGAAAAG---AGTT-----TT-A----ACCATATCTGT---A-AATATTAAATGAGAGTTACATCAGTATGAATATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATCTCGCTCGTTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTTTTTAGACATAAGTCTTGCTCGGTTTTCATCTGAAGTGTTTTGTTTAACCTATAGCAAAGATGAGTTATTTGGGATTGAATATCCGTAGATATGAATCATAAAAATACACTCGAATCAAAATACTGAATGAATATTATTCCAATGCA--TTTGTCAGTTAGTTTCATTAACCGCATAGCCAAACACTA--A--ATGGAGAGATAGATCATTTGTACTAAGTCCGCATTTATGACACGTTTGCAGGTAAGCATGTGAGTAGGTAAAACTTAATATTTTTACAGTGCTCCTACATTTTTCAATTAAAAGAGGATATTCCTTGCTAAGGGTCCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTGTCATCATCGCTCAATCTTAAGCTCAATGATAATTGCTCGGATGTATCTACATAATTTATTGTCTTATGATATATTTCCAAACATGTTTTGAAGGAAAGACACACGATTCGATAAAGCGTTCATAAATGTGAACTAAGTTGTAATGTCTTAATAAGTTATATATGTATCAGGAATAAACCCTCTTTTATTATACGGGTTGTCAT--TATAACGTATAAGTCTATTTA
gi|10 : ATATTATAATGGTTATTTCTTGTACAATCTTTTCACCGAATGAA---CAGGGAAAA-AA-C-TGAAAAG---AGTT-----TTGA----ACCATATCTGT---A-AATATCAAATGAAAGTTACATCAGTATAGATATA-TA--ACACTTAATATG-------------CGT-----TTACT-GATGA-T------------ATCTCGCTCGTTTGAAGATCAACTCATGAGCATATTGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACCCATAGCAAAGATAATTTATTAGGGGTTGCATAACGGTAGATATGAATCGTAaaagta
gi|11 : TATATTCTTTCTTTCCTCAATT---AACGGAGGGCAACATA-T--TT-------GTTA-----TGACATAAAGAACATATTAAATACGAACATGAG--CA--GC--AAATAACACACA--CCAA----TATATCAATATTAA---ATAGAGTAAAAGGGACAGGA----C----A----CTT-T----ACATTTGAATTGCAAAGCGCTACA---T-TGCACTAACATTCGCAGATACACG--------------CATGAA-CAAAA--GCGTG-------ATGAG---------GTACA--------AG------------CAGAC------------ACATATA----------------CAGAC---TAGA---AA--GC------ATA--CACG--CGCATAT----AC--CCGCGCATTCACAG-A--CACA----TGG-A-------TATCAAC--A---CAA-GC-A--------------T
gi|12 : ACATTCTTTATTTCTTCCGGT---AACTAAGAGTAACATG-T--ATTTTTTATGTTA-----TTATTGAAAGATCACAGTAAACATGAATATGAA--CA--GC---AA-ATCAC--------------GTATCACTATTAA---ATAGAGTAAAACAAACAGGA----C----AATTTCTTAA----ACATTTGAATTGCAGAGCACTACA---T-TGCACTAGCATGCGCAGATACAGTTAATTACAGA-------AAACC--AT--CCATG--------TAAG---------GCACA--------AG------------CAAAC------------ACGCGCT----------------CATAC---TCAC---ACCTTC------ACA--CACG--CGCTTAT----AC--TCACGCCTTCACAC-A--C
gi|13 : ATA-T--AT-------ATTACATAATTATATAAAGAGCATTATAAACAAGAATATGAA--CA--GC---AA-ATCAGAAA--CAAAA--G-ATGTCATTATTAA---ATAGAGCAAAG----GAGAAT---T----A----CTT-A----ACATTTGAATTTCAGAACGCTATA---A-TGCACGAACACGCACAGATACCGGCAAATTCAGTTGTACGT-AATT--AG--GC-TA-------A-AAA---------ATACA--------GG------------CAGAC------------A--TATA-----------------AG--------A---AA--CT------ATA--TATG--TGCATTT----AG--TCACCATTTTTCTA-C--CACA----T-ATA-------CATGAAC--A---TAA-TC-G--------------CGAATA-AGTA-C-ATACAGAg
gi|14 : TTTTCTCCATT---AGCGGAGAGCGACATA-T--AT-------GTTA-----TTACATAAAGAACATATTAAACATGAATATGAG--TA--GC--AAA-A-CAAATATTCAAAA--GTATATTAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----GTT-T----ACATTTGAATTGCAAAGTGCTACACCAC-TGCACTAACACGCACAGATACACGCAATTACAGACATATATGAA-CAAAA--GCGTG-------ATGAT---------GTACA--------AG------------CAGTC------------ACCCATA----------------CAGAC---TAAA---AT--GC------AAA--CAC---TGTATAC----AC--
gi|15 : tattTTAAACCAAAACAAAGATGAGTTAATTGGGATT---------T-GATAC---TTTTAGAAA-ACACTTGAATCCAAATATTGAGCGTATAGTGCTCCAAAGCA--TTTGCCTGTTTGTTTCATTTACCACACAATCAAAGGCTT--A--ATGAAGAAATAGTTCA-TTGTACTTAGTCTGCACTTATGCCACATTTGGCTGTAATCATACAAGTAGACATTGTATAATATTTTCATAGTGCT
gi|16 : aaTATGTCCTCTAGT---AGCGCAGTGCAGCATA-T--TT-------GTTA-----TTACATTAAGAATATAATAGATATTAATATAAG--CG--GC---AA-ACCACATG--CATAA--GGATATC---GTGAAAACATACACTGAAACGTACAGGA----C----A----ATT-ACTGTACATTTGACTTACAGAtg
gi|17 : TATATTCTTTATTACCT---TTCAAATCGGAGAGCAACATC-A--AT-------GTTA-----TCACAC--AGAAAATAGTAAACATGAATATGA---CA--TC--AAA---CACATA--CAAAAATATATATCAATGATAT---AAAGAGCAATGCAT
gi|18 : attTATTATTTGTTTC-TGCAGT---ACCAGGGAGCAGCATACT--TT-------CATA-----TTACATAAAGAACATAGT--ACATGAATGTGAA--CA--GCCGCAA-ATTACATG--CAAGA--AGATA
gi|19 : catgtacA--GCATG-------ACGACTAT------GTACA--------AA------------CAGAC------------GAAGAGA----------------AAGAC---TGGC---AA--AC------AAA--CACG--CACACGT----GC--ACACGCCTTCACAGCA--AACA----T---A-------CAGGAAC--A---CAA-GC-G--------------TGATTg
gi|2 : ATATATTCTTTATTTCCTCCATT---AGCGGAGAGCAACATA-T--AT-------GTTA-----TTACATAAAGAACATATTAAACATGAACATGAG--TA--GC--AAA-AAAACATA--CAAAA--GTTTATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAAAACGCTACACC-CCTGTACTAACACTGGCAGATATACGCAATTACAGACATACATGAATC--AA--GCGTG-------ATGAG---------GTACA--------AG------------CAGAC------------ACGCAAA----------------CAGAC---TGAA---AA--GG------AAA--CATG--CACATAT----AC--TAACGCCTTCACAG-A--CACA----T-G-AA------TATGAAC--A---CAA-AC-A--------------TGAATACAT-A-C-ATCCACAGT--TTTAG-AGTC----AACTCAATGC---TATGTT-TAATCACTAT--CTTGTATAATCTTTTCACCGAATAAA---CAGGGGAAA-AA-C-TGAAAAG---AGTT-----TT-A----ACAATATCTGT---A-AATATTAAATGAAAGTTACATCAGTATGACTATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATCCCGCTCATTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACCCATAGCAAAGATGAGTTATTTGGGATTGCATATCGGTAGATATGAATCGTAGAAA-ACACTCGAATCCAAATGCTGAATGAATATTATTCCAAAGCA--TTTGTCTGTTAGTTTCATTAACCGCACAGTCAAACACTA--A--ATGGAGAGATAGATCATTTGTACTAAGTCCGCACTTATGACACGATTGCCGGTAAGCATGAGAGTAGGTAAAACTTAATATTTTTATAGTGCTCCTACATTTTTCAAGTAAAAGAGGATATTCCTTGCTAAGGGACCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTCTCATCATCGCTCAATCTTAAGTTCAATGATAATTGCTCGAATGTATCTACA-----TATTGTCTTATGATATATTTCCAAACATGTTTTGAAGGAAAGACGCCCGATTCGATAAAACGTTCATAAATGTGAACTAAGTTGTAATGCCTTAATAAGT--TATATATATCAGGAATAAATCAGTTCCAGTCATTCAGTTTGTAAAAGTAAGATATATAAT--GATTTA
gi|20 : AAAATCTGAAACAATGGAGCTTCTCATCATCGCTCAATCCTAAGTTCAATAATAATTGTTCGGATTTATATA
gi|21 : TACAGAA----C----A----GTT-ACTAAACATTTTAATTGCAGACCGCTACA---T-TGCACAAACACGCGC--ATACAa
gi|3 : ATA-TCAAT-------GTTA-----TTACATAAA-----------ACATGAATATGAA--CA--GC--AAA--TCACATA--CACAA--ATAAATGATTATCAA---ATAGAGTAAAGCATAAAAGC----CAATTA----CTG-A----ACGTTCGAATTGCAGA-CACTACAAT-T-T--ATTAACACGCGCAAATACACGCAAT--CAG--ATACCTGAA-CAAAA--GCGTG-------ATAAT---------GTTCA--------AA------------CATAC------------ATACATA----------------CAAAC---TGAC---AA--TC------Ata
gi|3 : ATAAA---CA----AAA-TA-CATTAAAGG---AGTTATTTCTT-ATTTTATCTTTTCTGT---A-AATATTGAATGAATGTTACATCAGTATGAGTATA-TT--GCCGTTATTATG-------------TAC-----TCATT-GCAGAGT------------AT-TCATT-GTTAGTGACTTAATTCATAAACATATTGTGAAATCAATTTATGACTATTTTC--AGACATAAATCTTGATCTATTTTCAGCTGAAGAATTTCATATAAACAAAAACAAAGATAAGTTATTTAAAATTTCATATCG--------GAA----------------GAATCCACATATTGAGTGAATATTACTCTAAAGCA--CATGTCTGTTCGTTTCATTAACCACACACTCAAAGACCA--A--ATGAATATATTCTCCATATGTACCAGGTCCCGACTTATGACACATGTGTCGGTAAATATAAGGGTAGACATTGCTTGATATGTTTATAGTGCCCCTATATGTCTCGAGTAAATGAGGGCAGTTCTCGCTAAGATATCAAATCTTTGAGCTTTTTCGGAGAAAAACAAAATTAAAACTAAAACGACGGAGATTCTCATCATCGGTAAATCTTAAGCTCAGTAATAATTactgaacgttttgtttattcaataggcaaattgaacaaaataataataatacatgtaataataataataaaaaataaatagtgaaaaaaaaacaatcaaaatttagacatcatagtaaactataacgaaacgaaacataaggcactctggtgaaatctgaatgtatatgatatgataaacaaaatacattaaaggagttatttcttattttatcttttctgtaaatattgaatgaatgttacatcagtatgagtatattgccgttattatgtactcattgcagagtattcattgttagtgacttaattcataaacatattgtgaaatcaatttatgactattttcagacataaatcttgatctattttcagctgaagaatttcatataaacaaaaacaaagataagttatttaaaatttcatatcggaagaatccacatattgagtgaatattactctaaagcacatgtctgttcgtttcattaaccacacactcaaagaccaaatgaatatattctccatatgtaccaggtcccgacttatgacacatgtgtcggtaaatataagggtagacattgcttgatatgtttatagtgcccctatatgtctcgagtaaatgagggcagttctcgctaagatatcaaatctttgagctttttcggagaaaaacaaaattaaaactaaaacgacggagattctcatcatcggtaaatcttaagctcagtaataattttcaaacctgtttcgaaggaaagtcacccgattcaatttattattcatgaatatgaactaagttgttgtgtttctaaatcaaatatataagaaataaatccgcttttattattttggttctcaatacaacgtataagtatttatttcgaaaatt
gi|3 : atatcaatgttattacataaaacatgaatatgaacagcaaatcacatacacaaataaatgattatcaaatagagtaaagcataaaagccaattactgaacgttcgaattgcagacactacaatttattaacacgcgcaaatacacgcaatcagatacctgaacaaaagcgtgataatgttcaaacatacatacatacaaactgacaatcaactgaacgttttgtttattcaataggcaaattgaacaaaataataataatacatgtaataataataataaaaaataaatagtgaaaaaaaaacaatcaaaatttagacatcatagtaaactataacgaaacgaaacataaggcactctggtgaaatctgaatgtatatgatatgTAATA-ATTTTCAAACCTGTTTCGAAGGAAAGTCACCCGATTCAATTTATTATTCATGAATATGAACTAAGTTGTTGTGTTTC--TAAATCAAATATATA--AGAAATAAATCCGCTTTTATTATTTTGGTTCTCAA--TACAACGTATAAG--TATTTAttcaaacctgtttcgaaggaaagtcacccgattcaatttattattcatgaatatgaactaagttgttgtgtttctaaatcaaatatataagaaataaatccgcttttattattttggttctcaatacaacgtataagtatttatttcgaaaatt
gi|4 : atatcaatgttattacataaaacatgaatatgaacagcaaatcacatacacaaataaatgattatcaaatagagtaaagcataaaagccaattactgaacgttcgaattgcagacactacaatttattaacacgcgcaaatacacgcaatcagatacctgaacaaaagcgtgataatgttcaaacatacatacatacaaactgacaatcaactgaacgttttgtttattcaataggcaaattgaacaaaataataataatacatgtaataataataataaaaaataaatagtgaaaaaaaaacaatcaaaatttagacatcatagtaaactataacgaaacgaaacataaggcactctggtgaaatctgaatgtatatgatatgataaacaaaatacattaaaggagttatttcttattttatcttttctgtaaatattgaatgaatgttacatcagtatgagtatattgccgttattatgtactcattgcagagtattcattgttagtgacttaattcataaacatattgtgaaatcaatttatgactattttcagacataaatcttgatctattttcagctgaagaatttcatataaacaaaaacaaagataagttatttaaaatttcatatcggaagaatccacatattgagtgaatattactctaaagcacatgtctgttcgtttcattaaccacacactcaaagaccaaatgaatatattctccatatgtaccaggtcccgacttatgacacatgtgtcggtaaatataagggtagacattgcttgatatgtttatagtgcccctatatgtctcgagtaaatgagggcagttctcgctaagatatcaaatctttgagctttttcggagaaaaacaaaattaaaactaaaacgacggagattctcatcatcggtaaatcttaagctcagATATATTCTTTATTTCCTCCATT---AGCGGAGAGCGACATA-T--AT-------GTTA-----TTACATAAAGAACATATTAAACATGAAAAAAAAAACAAAGC--AAA-AAAACATA--CAAAA--GTATATCAATATTAA---ATAGAATAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAAAACGCTACACC-CCTGTACTAACACTCGCAGATATACGCAATTACAGCCATACATGAATC--AA--GCGTG-------ATGAG---------GTACA--------AG------------CAGAC------------ACGCATA----------------CAGAC---TGAA---AA--GG------AAA--CATG--CACATAT----AC--TAACGCCTTCACAG-A--CACA----T-G-AATATATACATCCAC--AGTTTAA-GC-GCCAACTCAAAGATTTGTTTA-ATCA-CTATACAAAAT-----AA-AGTA----AA-TAAACACAGGCATATTATAATGGTTATTTCTTGTACAATCTTTTCACCGAATAAA---AAGGGGGAA-AA-C-TGAAAAT---AGTT-----TT-A----ACCATATCTGT---A-AATATTAAATGAAAGCTACATCAGTATGAATATA-TA--ACACTTAATAAG-------------CAT-----TCACT-GATGA-T------------ATCTCGCTCGTTAGAAGATTAATTCATAAGCATAATGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAGCCCATAGCAAAGATGAGTTATTAGGGATTGCATATCGGTAGATATGAATCGTAGAAA-ACACTCGAATCCAAATACTTAATGAATATTATTCCAAAGAA--TTTGTCTGTTAGTTTCATTAACCGCACAGTCAAACACTA--A--ATGGAGAGATAGATCATTTGTACTAAGTCCACACTTATGACACGTTTGCCGGTAAGCATGAGAGTAGGTAAAACTTAATATTTTTATATTGCTCCTACATTTTTCAAGTAAAAGAGGATATTCCTTTCTAAGAGACCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTCTCATCATCGCTCAATCTTAAGCTCAATGATAATTGCTCGGATGTATCtttcgaaaatt
gi|5 : ATATTCATTATTCCCTCCATT---AGTAGAAGGCGACATA-T--AC-------GTTA-----TTACATAAAGAACATATTAAACATGAACATGAG--TA--GC--AAA-AAT-CATA--CAGAA--ATATATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACACTTGAATTGCAAATCGCTACACCAC-TGCACTAACACTCGCAGATACACGCAATTACAGACATACATGAA-C--AAAAGCGTGATGAGGTATAAGCATACACGCATACAGACTAAAAAG------------CAAAC------------ACGCACATATACTCACTCCTTCACAGACACATGAATATGA--AC------AAAAACATGAATGCATAC----AT--TCACAACTTTA-----------------G-A--------ATCAAC--C---CAAAGCTG--------------TGTTTA-ATCA-CCATACAAAAT-----AA-AATA----AAATAAACACAGGCATATTACAATGGTTATTTCTTGTACAATCTTTTCACCGAGTAAA---CAGGGCAAA-AA-C-TAAACAT---AGTT-----TT-A----ACCATGTCTGT---A-AATATTAAATGAAAGTTAAATCAGTATCACTATA-TA--ACACTTAATATGTATTCACTGGTGACATCTCGCTCGCTAGAAGA-TTAATTCATAAGCATCTCGCTCGCTAGAAGATTAATTCATAAGCATACTATGGAATGAAATTACGACTATTTTC--AGACATAAGCATTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACC-ATAGCAAAGATGAGTTATTTGGGATTGTATATCGGTAGATATGAATTGTAGAAA-ACACTCGAATCCAAATACTGAATGAATATTATTCCAAATCA--TTTGTCTGTTaa
gi|6 : -------CGTCAACT-A---AAA-GCTA--------------TGTTTA-ATCA-TTATACAAAAT-----AA-AGTA----AAATAAACACAGGCATATTACGATGGTTATTTCTTGTACAATCTTTTTACCGAGTTAA---CAGGGAAAA-AA-C-TGAAAAG---AGTT-----TT-A----ACCATGTCTGT---A-AATATTAAATGAAAGTTACATCGGTATGAATATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATATCGCTCGTTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTT---AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTTACCAATAGCAAAGATGAGTTATTTGGGATTGCATATCGGTAAATATTAATCGTAGAAA-ACACTCGAATCCAAATACTGAATGAATATTATTCCAAACCATTTTTGTCTGTTAGTTTCATTAACCGCACAATCAAACACTATCATTATGGAGAGATAGTTCATTTGTACAAAGTCCACACTTATGACACGCTTGCCGGTAAGCATACGAGTAGGTAATACTTAATATTTTTgcgtcgtcataccaacaaagactgttagtgtttaaaaata
gi|7 : ccacagttttagTATATTCTTTATTTCTTCAATA---AAATGATACCAACATA-T--AT-------GTAA-----TTACATAAAGAACATAGTAAACATGAATATGAG--CA--TC---AA-ATCACATA--CAAAA--ATATATCAATATTAA---AAAGAGTAAAGCATACAGGA----CAATTA----CTT-A----ACATTTGAATTGTAGATCGTTACA---T-TGCACTAACAC-------TAAACGTAATT-TGG-------TAAAT-------GC-------------AG-----------ACA--------CG------------CAGAC-----------------TA-------------------AC---TAGC---AA--GC------ATA--CACG--CGCATAT----AT--TCACGCATTCACAG-A--CACA----TGG-A-------TATGAAC--A---CAA-GC-A--------------TGATTA-GGAA-C-ATACATAGTC-T--AAGAGTA----TACTTAA---AGCTATAT--------TTATTTAATATACAA-----------AATAAA------GCAAAATAA-T-ACAAAAGAAAAGTT-----TT-A----ACTCTGTCTAT---T-AAAATTAAATGAACGTTACATCAGTATGAGTATA-TT--ACAATTAATATG-------------CAT-----TCACT-GAAGA-T------------ATCTCGCCCGTTAGAAGATTAATTCATAAGCGTATTGTCAAATGAATTTACAACCA
gi|8 : aaatTTATTTCATCCATT---AACTGAGAGCAACTTT-TTCAT-------GTTA-----TTACATAAAGAACATAATAAACATGAATATGAA--CA--AC---TA-ATCCCATA--CAAAG--ATATACCATTATTAA---ATAGAATAAAGCATACACGAAAATT----A----CTT-A----ATA-TTGAAATACAGAGCGCTATA
gi|9 : taattgCA-C-A-ACACAATCTT--AA-TGTACATCAGCCAAACAAAATTATATTACAATGGTTAGTTCTTGTTCCATATTTTCGCTCAGAGAA---CAGAGAAAA-AA----GAAAAACAAAATT-------------ATTATTTCTATTTTATAGTTTTGAATGGAAGTCACAACAGTATGAGTGTATTAGTACCCTTATTATG-------------TAT-----TTATT-tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacatcgagaggctgagaatcaacataaagttttggttaactaatatacaacataaagcgaaataatacaagga
blockSeqs : CAA C CA TTTTTAT CATAA T AAA AA CGC TAA TT ATA AAC CAATT ATTT A CTGT G CCAC T A TT CAA AA G ATGAGGT CATACACGC GACTAAAAAG ACGCACATATACTCACTCCTTCAC ACA GAATAT CTTC T AA AA . . GCA TGAATATATAC C AGTT A GCCAACTCAAAGATT A C T . T G TTT G CATC C AT . T CA AAA ATTTC G TTTT A TTT T A T GT TATTCACTGGTGA CTCGC A G TAATTCATAAGC . C . TT TCATT T C T . T A A C T A AG A .
blockSeqs : . . TC . . G G . A AT . G . CAATT . . CTAA G CCCC G T AC CAA . A . TAT AG ACATATAC . AGA GC C . . . . GA TGGAT G TA . TG A . C . C C CTT . . A AT . . C CAA . . . A . . C . . . . . . . . C . . A A A A . T . . . T . C .
blockSeqs : . . . . . A A . A AT . G . AAATT . . . A CCCC G A AC CAA . G . . AG ACGCGCTC . CAC CT T . . . . CA TATAC G A . TA A . C . T A CT . . A AC . . C . . . . T . . G . . . . . . . . C . . A T A T
blockSeqs : . . . . . T A . A AC . G . TT . . . G CCAC G A CC CC . A . . GG ACCCATAC . AAA GC A . . . . AC TGAAT G A . A T . C . . A . . . C AC . . C . . . . A . . A . . . . . . . . A . . A A A A
blockSeqs : . . . . . A G . A AT . A . C . . . A ATT T A AC TT . G . . AG GAAGAGAA . GGC AC A . . . . GA TGGAT C A . G T . A . . A . . . C AC . . C . . . . G . . C . . . . . . . . C . . A T C T
blockSeqs : . . . . . G G . A AA . G . C . . . C T G A A TC . G . . AA ACGCAAAC . GAA GG A . . . . GA TAC C A . G T . C . . T . . . . T . . C . . . . G . . A . . . . . . . . A . .
blockSeqs : . . . . . G A . A AA . A . C . . . A T G . . TC . G . . AG ATACATAC . GAC TC A . . . . GA GA C C . A A . . . C . . . T . . . . G . . G . . . . . . . .
blockSeqs : . . . . . T G . A AA . G . C . . . T A T . . C . G . . AA ACGCATAC . GAA GG A . . . . . G A . A . . . . . . . T . . G . . . . .
blockSeqs : . . . . . T A . . AT . A . C . . . T T T . . T . . . . AG ATATA . AGC AC T . . . .
blockSeqs : . . . . . T G . . AT . A . C . . . G T . . . . . CG TA . A GC
blockSeqs : . . . . . G G . . A . A . C . . . .
blockSeqs : . . . . A A . . T . . . C . . .
blockSeqs : . . . . . . . . . . .
blockSeqCons : CCC** AG******************** ACGCATAC**************************** GAN*** GC******** **** ** GA*** TGGAT************ A***** *** C** **
originalCons : ATATATTCTTTATTTCCTCCATT---AGCGGAGAGCGACATA-T--AT-------GTTA-----TTACATAAAGAACATANTAAACATGAATATGAG--CA--GC--AAA-ANCACATA--CAAAA--GTATATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAGAGCGCTACACC-C-TGCACTAACACGCGCAGATACACGCAATTACAGACATACATGAATC--AA--GCGTG-------ATGAG---------GTACA--------AG------------CAGAC------------ACGCATA----------------CAGAC---TGAA---AA--GC------ANA--CACG--CGCATAT----AC--TCACGCCTTCACAG-A--CACA----T-G-A-------CATCAAC--A---CAA-GC-G--------------TGNTTA-ATCA-C-ATACANAAT--T--AA-AGTA----AACTAAACACAGGCATATTACAATGGTTATTTCTTGTACAATCTTTTCACCGAATAAA---CAGGGAAAA-AA-C-TGAAAAG---AGTT-----TT-A----ACCATGTCTGT---A-AATATTAAATGAAAGTTACATCAGTATGAGTATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATCTCGCTCGTTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACCCATAGCAAAGATGAGTTATTTGGGATTGCATATCGGTAGATATGAATCGTAGAAA-ACACTCGAATCCAAATACTGAATGAATATTATTCCAAAGCA--TTTGTCTGTTAGTTTCATTAACCGCACAGTCAAACACTA--A--ATGGAGAGATAGNTCATTTGTACTAAGTCCGCACTTATGACACGTTTGCCGGTAAGCATGNGAGTAGGTAANACTTAATATTTTTATAGTGCTCCTACATTTTTCAAGTAAAAGAGGATATTCCTTGCTAAGGGACCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTCTCATCATCGCTCAATCTTAAGCTCAATGATAATTGCTCGGATGTATCTACATAATTTATTGTCTTATGATATATTTCCAAACATGTTTCGAAGGAAAGACGCCCGATTCGATAAANCGTTCATAAATGTGAACTAAGTTGTAATGTCTTAATAAGTCATATATATATCAGGAATAAATCCGCTTTTATTATTCGGGTTGTCAA--TANAACGTATAAG--TATTTA
finalCons : ATATATTCTTTATTTCCTCCATT---AGCGGAGAGCGACATA-T--AT-------GTTA-----TTACATAAAGAACATANTAAACATGAATATGAG--CA--GC--AAA-ANCACATA--CAAAA--GTATATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAGAGCGCTACACCC--TGCACTAACACGCGCAGATACACGCAATTACAGACATACATGAATC--AA--GCGTG-------ATGAG---------GTACAAG--------------------CAGACACGCATAC----------------------------AGAC---TGAN---AAGC--------ANA--CACG--CGCATAT----AC--TCACGCCTTCACAGA---CACATGGAT------------ATCAACA-----CAA-GC-G--------------TGNTTA-ATCA-C-ATACANAAT--T--AA-AGTA----AACTAAACACAGGCATATTACAATGGTTATTTCTTGTACAATCTTTTCACCGAATAAA---CAGGGAAAA-AAC--TGAAAAG---AGTT-----TT-A----ACCATGTCTGT---A-AATATTAAATGAAAGTTACATCAGTATGAGTATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATCTCGCTCGTTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACCCATAGCAAAGATGAGTTATTTGGGATTGCATATCGGTAGATATGAATCGTAGAAA-ACACTCGAATCCAAATACTGAATGAATATTATTCCAAAGCA--TTTGTCTGTTAGTTTCATTAACCGCACAGTCAAACACTA--A--ATGGAGAGATAGNTCATTTGTACTAAGTCCGCACTTATGACACGTTTGCCGGTAAGCATGNGAGTAGGTAANACTTAATATTTTTATAGTGCTCCTACATTTTTCAAGTAAAAGAGGATATTCCTTGCTAAGGGACCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTCTCATCATCGCTCAATCTTAAGCTCAATGATAATTGCTCGGATGTATCTACATAATTTATTGTCTTATGATATATTTCCAAACATGTTTCGAAGGAAAGACGCCCGATTCGATAAANCGTTCATAAATGTGAACTAAGTTGTAATGTCTTAATAAGTCATATATATATCAGGAATAAATCCGCTTTTATTATTCGGGTTGTCAA--TANAACGTATAAG--TATTTA
Alignments
lowQualScore : 111 111111111 1111 33333 11 2222 22222222222222222222 1111111111111111111111 111111111111 111111111111 11111 1111 22222222222222 111111 3333333333333333 1 44444 1111 1 111 11111 2222222222222 11111 222222222222 22222 1 11 11
lowQualScore : 555 0 2 77 9999999 77777 2 555 33 444 555 33 444 0 555 555555555 6666 3 3333 5 55555 5 3 22 5555 55 2 66666666666666666666 9999999999999999999999 888888888888 33 4 0 2 555555555555 666 55 55 00000 2 4 66 0000 55 88888888888888 8888 777 222222 4 2222222222222222 1 5 1 5 5 1 00000 5 2222 1 0 11 777 4 666 555 11111 4 9999 2 777 4 2 4 66 4444444444444 11111 4 0 5 555555555555 77 4 0 5 77 99999 1 1 1 77777 7 0 0 1 7 2 7 3 88 1 88
lowQualScore : ... . . .. ....... ..... . ... .. ... ... .. ... . ... ......... .... . .... . ..... . . .. .... .. . .................... ...................... ............ .. . . . ............ ... .. .. ..... . . .. .... .. .............. .... ... ...... . ................ . . . . . . ..... . .... . . .. ... . ... ... ..... . .... . ... . . . .. ............. ..... . . . ............ .. . . . .. ..... . . . ..... . . . . . . . . .. . ..
lowQualScore : 888 7 9 99 3333333 11111 0 555 99 111 666 99 444 7 444 222222222 5555 1 1111 8 55555 9 3 33 2222 00 0 55555555555555555555 3333333333333333333333 666666666666 22 3 5 6 999999999999 555 55 55 66666 9 4 11 6666 66 44444444444444 9999 888 000000 4 1111111111111111 0 7 4 0 0 0 44444 7 1111 4 7 22 888 4 222 666 11111 4 4444 7 888 4 7 4 11 4444444444444 11111 4 8 0 666666666666 99 5 1 7 99 33333 0 0 0 55555 3 7 7 0 3 0 3 7 33 0 33
consensus : ATATATTCTTTATTTCCTCCATT---AGCGGAGAGCGACATA-T--AT-------GTTA-----TTACATAAAGAACATANTAAACATGAATATGAG--CA--GC--AAA-ANCACATA--CAAAA--GTATATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAGAGCGCTACACC-C-TGCACTAACACGCGCAGATACACGCAATTACAGACATACATGAATC--AA--GCGTGATGAG---G----------------TACA--------AG------------CAGAC------------ACGCATACAGACTGAC------AA--GCAN--ACACGCGCAT--AT--ACT----CACGCNTTCACAG-A--CACA----TGGAT-------------AT---CA---AC--A---CAA-GC-G--------------TGNTTA-ATCA-C-ATACANAAT--T--AA-AGTA----AACTAAACACAGGCATATTACAATGGTTATTTCTTGTACAATCTTTTCACCGAATAAA---CAGGGAAAA-AA-C-TGAAAAG---AGTT-----TT-A----ACCATGTCTGT---A-AATATTAAATGAAAGTTACATCAGTATGAGTATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATCTCGCTCGTTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACCCATAGCAAAGATGAGTTATTTGGGATTGCATATCGGTAGATATGAATCGTAGAAA-ACACTCGAATCCAAATACTGAATGAATATTATTCCAAAGCA--TTTGTCTGTTAGTTTCATTAACCGCACAGTCAAACACTA--A--ATGGAGAGATAGNTCATTTGTACTAAGTCCGCACTTATGACACGTTTGCCGGTAAGCATGNGAGTAGGTAANACTTAATATTTTTATAGTGCTCCTACATTTTTCAAGTAAAAGAGGATATTCCTTGCTAAGGGACCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTCTCATCATCGCTCAATCTTAAGCTCAATGATAATTGCTCGGATGTATCTACATAATTTATTGTCTTATGATATATTTCCAAACATGTTTCGAAGGAAAGACGCCCGATTCGATAAANCGTTCATAAATGTGAACTAAGTTGTAATGTCTTAATAAGTCATATATATATCAGGAATAAATCCGCTTTTATTATTCGGGTTGTCAA--TANAACGTATAAG--TATTTA
Reference ( family-6539 ) : ATATATTCTTTATTTCCTCCATT---AGCGGAGAGCGACATA-T--AT-------GTTA-----TTACATAAAGAACATANTAAACATGAATATGAG--CA--GC--AAA-ANCACATA--CAAAA--GTATATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAGAGCGCTACACC-C-TGCACTAACACGCGCAGATACACGCAATTACAGACATACATGAATC--AA--GCGTGATGAG---G----------------TACA--------AG------------CAGAC------------ACGCATACAGACTGAN------AA--GCAN--ACACGCGCAT--AT--ACT----CACGCCTTCACAG-A--CACA----TGGAT-------------AT---CA---AC--A---CAA-GC-G--------------TGNTTA-ATCA-C-ATACANAAT--T--AA-AGTA----AACTAAACACAGGCATATTACAATGGTTATTTCTTGTACAATCTTTTCACCGAATAAA---CAGGGAAAA-AA-C-TGAAAAG---AGTT-----TT-A----ACCATGTCTGT---A-AATATTAAATGAAAGTTACATCAGTATGAGTATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATCTCGCTCGTTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACCCATAGCAAAGATGAGTTATTTGGGATTGCATATCGGTAGATATGAATCGTAGAAA-ACACTCGAATCCAAATACTGAATGAATATTATTCCAAAGCA--TTTGTCTGTTAGTTTCATTAACCGCACAGTCAAACACTA--A--ATGGAGAGATAGNTCATTTGTACTAAGTCCGCACTTATGACACGTTTGCCGGTAAGCATGNGAGTAGGTAANACTTAATATTTTTATAGTGCTCCTACATTTTTCAAGTAAAAGAGGATATTCCTTGCTAAGGGACCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTCTCATCATCGCTCAATCTTAAGCTCAATGATAATTGCTCGGATGTATCTACATAATTTATTGTCTTATGATATATTTCCAAACATGTTTCGAAGGAAAGACGCCCGATTCGATAAANCGTTCATAAATGTGAACTAAGTTGTAATGTCTTAATAAGTCATATATATATCAGGAATAAATCCGCTTTTATTATTCGGGTTGTCAA--TANAACGTATAAG--TATTTA
gi|1 : TATATTCTTTATTTCCTCCATT---AGCGGAGAGAGACATA-T--AT-------GTTA-----TTACATAAAGAACATAATAAATATGAACATGAA--TA--GC--AAA-AAAACACA--CAAAA--GTATATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAAAACGCTACACC-CCTGCACTAACACTCGCAGCTATACGCAACTACAGACATACATGAATC--AA--TCGTGATGAG---G----------------TATA--------AGCAGACACGCATACAGACTGAAAAGGAAACATGCATATATACTAAC----------GCCTTCACAGACACATGAAT--ACG----AACACAATCATGA-A--TACA----TACATCCACAGTTTTAGCAT---CA---ACTCA---AAA-AT-G--------------TGTTTA-ATCAAT-ATACAAAAC-----AA-AGTA----AA-TAAACACAGGCATGTTATAATGGTTATTTCTTGTACAATCTTTTCACCGAAAAAAAAACAGGGAAAA-AAAC-TGAAAAG---AGTT-----TT-A----ACCATATCTGT---A-AATATTAAATGAGAGTTACATCAGTATGAATATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATCTCGCTCGTTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTTTTTAGACATAAGTCTTGCTCGGTTTTCATCTGAAGTGTTTTGTTTAACCTATAGCAAAGATGAGTTATTTGGGATTGAATATCCGTAGATATGAATCATAAAAATACACTCGAATCAAAATACTGAATGAATATTATTCCAATGCA--TTTGTCAGTTAGTTTCATTAACCGCATAGCCAAACACTA--A--ATGGAGAGATAGATCATTTGTACTAAGTCCGCATTTATGACACGTTTGCAGGTAAGCATGTGAGTAGGTAAAACTTAATATTTTTACAGTGCTCCTACATTTTTCAATTAAAAGAGGATATTCCTTGCTAAGGGTCCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTGTCATCATCGCTCAATCTTAAGCTCAATGATAATTGCTCGGATGTATCTACATAATTTATTGTCTTATGATATATTTCCAAACATGTTTTGAAGGAAAGACACACGATTCGATAAAGCGTTCATAAATGTGAACTAAGTTGTAATGTCTTAATAAGTTATATATGTATCAGGAATAAACCCTCTTTTATTATACGGGTTGTCAT--TATAACGTATAAGTCTATTTA
gi|10 : ATATTATAATGGTTATTTCTTGTACAATCTTTTCACCGAATGAA---CAGGGAAAA-AA-C-TGAAAAG---AGTT-----TTGA----ACCATATCTGT---A-AATATCAAATGAAAGTTACATCAGTATAGATATA-TA--ACACTTAATATG-------------CGT-----TTACT-GATGA-T------------ATCTCGCTCGTTTGAAGATCAACTCATGAGCATATTGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACCCATAGCAAAGATAATTTATTAGGGGTTGCATAACGGTAGATATGAATCGTAaaagta
gi|11 : TATATTCTTTCTTTCCTCAATT---AACGGAGGGCAACATA-T--TT-------GTTA-----TGACATAAAGAACATATTAAATACGAACATGAG--CA--GC--AAATAACACACA--CCAA----TATATCAATATTAA---ATAGAGTAAAAGGGACAGGA----C----A----CTT-T----ACATTTGAATTGCAAAGCGCTACA---T-TGCACTAACATTCGCAGATACACG--------------CATGAA-CAAAA--GCGTGATGAG---G----------------TACA--------AG------------CAGAC------------ACATATACAGACTAGA------AA--GCAT--ACACGCGCAT--AT--ACC----CGCGCATTCACAG-A--CACA----TGGAT-------------AT---CA---AC--A---CAA-GC-A--------------T
gi|12 : ACATTCTTTATTTCTTCCGGT---AACTAAGAGTAACATG-T--ATTTTTTATGTTA-----TTATTGAAAGATCACAGTAAACATGAATATGAA--CA--GC---AA-ATCAC--------------GTATCACTATTAA---ATAGAGTAAAACAAACAGGA----C----AATTTCTTAA----ACATTTGAATTGCAGAGCACTACA---T-TGCACTAGCATGCGCAGATACAGTTAATTACAGA-------AAACC--AT--CCATG-TAAG---G----------------CACA--------AG------------CAAAC------------ACGCGCTCATACTCAC------ACCTTCAC--ACACGCGCTT--AT--ACT----CACGCCTTCACAC-A--C
gi|13 : ATA-T--AT-------ATTACATAATTATATAAAGAGCATTATAAACAAGAATATGAA--CA--GC---AA-ATCAGAAA--CAAAA--G-ATGTCATTATTAA---ATAGAGCAAAG----GAGAAT---T----A----CTT-A----ACATTTGAATTTCAGAACGCTATA---A-TGCACGAACACGCACAGATACCGGCAAATTCAGTTGTACGT-AATT--AG--GC-TAA-AAA---A----------------TACA--------GG------------CAGAC------------A--TATA-AGA-----------AA--CTAT--ATATGTGCAT--TT--AGT----CACCATTTTTCTA-C--CACA----TATAC-------------AT---GA---AC--A---TAA-TC-G--------------CGAATA-AGTA-C-ATACAGAg
gi|14 : TTTTCTCCATT---AGCGGAGAGCGACATA-T--AT-------GTTA-----TTACATAAAGAACATATTAAACATGAATATGAG--TA--GC--AAA-A-CAAATATTCAAAA--GTATATTAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----GTT-T----ACATTTGAATTGCAAAGTGCTACACCAC-TGCACTAACACGCACAGATACACGCAATTACAGACATATATGAA-CAAAA--GCGTGATGAT---G----------------TACA--------AG------------CAGTC------------ACCCATACAGACTAAA------AT--GCAA--ACAC-TGTAT--AC--AC
gi|15 : tattTTAAACCAAAACAAAGATGAGTTAATTGGGATT---------T-GATAC---TTTTAGAAA-ACACTTGAATCCAAATATTGAGCGTATAGTGCTCCAAAGCA--TTTGCCTGTTTGTTTCATTTACCACACAATCAAAGGCTT--A--ATGAAGAAATAGTTCA-TTGTACTTAGTCTGCACTTATGCCACATTTGGCTGTAATCATACAAGTAGACATTGTATAATATTTTCATAGTGCT
gi|16 : aaTATGTCCTCTAGT---AGCGCAGTGCAGCATA-T--TT-------GTTA-----TTACATTAAGAATATAATAGATATTAATATAAG--CG--GC---AA-ACCACATG--CATAA--GGATATC---GTGAAAACATACACTGAAACGTACAGGA----C----A----ATT-ACTGTACATTTGACTTACAGAtg
gi|17 : TATATTCTTTATTACCT---TTCAAATCGGAGAGCAACATC-A--AT-------GTTA-----TCACAC--AGAAAATAGTAAACATGAATATGA---CA--TC--AAA---CACATA--CAAAAATATATATCAATGATAT---AAAGAGCAATGCAT
gi|18 : attTATTATTTGTTTC-TGCAGT---ACCAGGGAGCAGCATACT--TT-------CATA-----TTACATAAAGAACATAGT--ACATGAATGTGAA--CA--GCCGCAA-ATTACATG--CAAGA--AGATA
gi|19 : catgtacA--GCATGACGACTATG----------------TACA--------AA------------CAGAC------------GAAGAGAAAGACTGGC------AA--ACAA--ACACGCACAC--GT--GCA----CACGCCTTCACAGCA--AACA----T--AC-------------AG---GA---AC--A---CAA-GC-G--------------TGATTg
gi|2 : ATATATTCTTTATTTCCTCCATT---AGCGGAGAGCAACATA-T--AT-------GTTA-----TTACATAAAGAACATATTAAACATGAACATGAG--TA--GC--AAA-AAAACATA--CAAAA--GTTTATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAAAACGCTACACC-CCTGTACTAACACTGGCAGATATACGCAATTACAGACATACATGAATC--AA--GCGTGATGAG---G----------------TACA--------AG------------CAGAC------------ACGCAAACAGACTGAA------AA--GGAA--ACATGCACAT--AT--ACT----AACGCCTTCACAG-A--CACA----TGAAT-------------AT---GA---AC--A---CAA-AC-A--------------TGAATACAT-A-C-ATCCACAGT--TTTAG-AGTC----AACTCAATGC---TATGTT-TAATCACTAT--CTTGTATAATCTTTTCACCGAATAAA---CAGGGGAAA-AA-C-TGAAAAG---AGTT-----TT-A----ACAATATCTGT---A-AATATTAAATGAAAGTTACATCAGTATGACTATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATCCCGCTCATTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACCCATAGCAAAGATGAGTTATTTGGGATTGCATATCGGTAGATATGAATCGTAGAAA-ACACTCGAATCCAAATGCTGAATGAATATTATTCCAAAGCA--TTTGTCTGTTAGTTTCATTAACCGCACAGTCAAACACTA--A--ATGGAGAGATAGATCATTTGTACTAAGTCCGCACTTATGACACGATTGCCGGTAAGCATGAGAGTAGGTAAAACTTAATATTTTTATAGTGCTCCTACATTTTTCAAGTAAAAGAGGATATTCCTTGCTAAGGGACCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTCTCATCATCGCTCAATCTTAAGTTCAATGATAATTGCTCGAATGTATCTACA-----TATTGTCTTATGATATATTTCCAAACATGTTTTGAAGGAAAGACGCCCGATTCGATAAAACGTTCATAAATGTGAACTAAGTTGTAATGCCTTAATAAGT--TATATATATCAGGAATAAATCAGTTCCAGTCATTCAGTTTGTAAAAGTAAGATATATAAT--GATTTA
gi|20 : AAAATCTGAAACAATGGAGCTTCTCATCATCGCTCAATCCTAAGTTCAATAATAATTGTTCGGATTTATATA
gi|21 : TACAGAA----C----A----GTT-ACTAAACATTTTAATTGCAGACCGCTACA---T-TGCACAAACACGCGC--ATACAa
gi|3 : ATA-TCAAT-------GTTA-----TTACATAAA-----------ACATGAATATGAA--CA--GC--AAA--TCACATA--CACAA--ATAAATGATTATCAA---ATAGAGTAAAGCATAAAAGC----CAATTA----CTG-A----ACGTTCGAATTGCAGA-CACTACAAT-T-T--ATTAACACGCGCAAATACACGCAAT--CAG--ATACCTGAA-CAAAA--GCGTGATAAT---G----------------TTCA--------AA------------CATAC------------ATACATACAAACTGAC------AA--TCAta
gi|3 : ATAAA---CA----AAA-TA-CATTAAAGG---AGTTATTTCTT-ATTTTATCTTTTCTGT---A-AATATTGAATGAATGTTACATCAGTATGAGTATA-TT--GCCGTTATTATG-------------TAC-----TCATT-GCAGAGT------------AT-TCATT-GTTAGTGACTTAATTCATAAACATATTGTGAAATCAATTTATGACTATTTTC--AGACATAAATCTTGATCTATTTTCAGCTGAAGAATTTCATATAAACAAAAACAAAGATAAGTTATTTAAAATTTCATATCG--------GAA----------------GAATCCACATATTGAGTGAATATTACTCTAAAGCA--CATGTCTGTTCGTTTCATTAACCACACACTCAAAGACCA--A--ATGAATATATTCTCCATATGTACCAGGTCCCGACTTATGACACATGTGTCGGTAAATATAAGGGTAGACATTGCTTGATATGTTTATAGTGCCCCTATATGTCTCGAGTAAATGAGGGCAGTTCTCGCTAAGATATCAAATCTTTGAGCTTTTTCGGAGAAAAACAAAATTAAAACTAAAACGACGGAGATTCTCATCATCGGTAAATCTTAAGCTCAGTAATAATTactgaacgttttgtttattcaataggcaaattgaacaaaataataataatacatgtaataataataataaaaaataaatagtgaaaaaaaaacaatcaaaatttagacatcatagtaaactataacgaaacgaaacataaggcactctggtgaaatctgaatgtatatgatatgataaacaaaatacattaaaggagttatttcttattttatcttttctgtaaatattgaatgaatgttacatcagtatgagtatattgccgttattatgtactcattgcagagtattcattgttagtgacttaattcataaacatattgtgaaatcaatttatgactattttcagacataaatcttgatctattttcagctgaagaatttcatataaacaaaaacaaagataagttatttaaaatttcatatcggaagaatccacatattgagtgaatattactctaaagcacatgtctgttcgtttcattaaccacacactcaaagaccaaatgaatatattctccatatgtaccaggtcccgacttatgacacatgtgtcggtaaatataagggtagacattgcttgatatgtttatagtgcccctatatgtctcgagtaaatgagggcagttctcgctaagatatcaaatctttgagctttttcggagaaaaacaaaattaaaactaaaacgacggagattctcatcatcggtaaatcttaagctcagtaataattttcaaacctgtttcgaaggaaagtcacccgattcaatttattattcatgaatatgaactaagttgttgtgtttctaaatcaaatatataagaaataaatccgcttttattattttggttctcaatacaacgtataagtatttatttcgaaaatt
gi|3 : atatcaatgttattacataaaacatgaatatgaacagcaaatcacatacacaaataaatgattatcaaatagagtaaagcataaaagccaattactgaacgttcgaattgcagacactacaatttattaacacgcgcaaatacacgcaatcagatacctgaacaaaagcgtgataatgttcaaacatacatacatacaaactgacaatcaactgaacgttttgtttattcaataggcaaattgaacaaaataataataatacatgtaataataataataaaaaataaatagtgaaaaaaaaacaatcaaaatttagacatcatagtaaactataacgaaacgaaacataaggcactctggtgaaatctgaatgtatatgatatgTAATA-ATTTTCAAACCTGTTTCGAAGGAAAGTCACCCGATTCAATTTATTATTCATGAATATGAACTAAGTTGTTGTGTTTC--TAAATCAAATATATA--AGAAATAAATCCGCTTTTATTATTTTGGTTCTCAA--TACAACGTATAAG--TATTTAttcaaacctgtttcgaaggaaagtcacccgattcaatttattattcatgaatatgaactaagttgttgtgtttctaaatcaaatatataagaaataaatccgcttttattattttggttctcaatacaacgtataagtatttatttcgaaaatt
gi|4 : atatcaatgttattacataaaacatgaatatgaacagcaaatcacatacacaaataaatgattatcaaatagagtaaagcataaaagccaattactgaacgttcgaattgcagacactacaatttattaacacgcgcaaatacacgcaatcagatacctgaacaaaagcgtgataatgttcaaacatacatacatacaaactgacaatcaactgaacgttttgtttattcaataggcaaattgaacaaaataataataatacatgtaataataataataaaaaataaatagtgaaaaaaaaacaatcaaaatttagacatcatagtaaactataacgaaacgaaacataaggcactctggtgaaatctgaatgtatatgatatgataaacaaaatacattaaaggagttatttcttattttatcttttctgtaaatattgaatgaatgttacatcagtatgagtatattgccgttattatgtactcattgcagagtattcattgttagtgacttaattcataaacatattgtgaaatcaatttatgactattttcagacataaatcttgatctattttcagctgaagaatttcatataaacaaaaacaaagataagttatttaaaatttcatatcggaagaatccacatattgagtgaatattactctaaagcacatgtctgttcgtttcattaaccacacactcaaagaccaaatgaatatattctccatatgtaccaggtcccgacttatgacacatgtgtcggtaaatataagggtagacattgcttgatatgtttatagtgcccctatatgtctcgagtaaatgagggcagttctcgctaagatatcaaatctttgagctttttcggagaaaaacaaaattaaaactaaaacgacggagattctcatcatcggtaaatcttaagctcagATATATTCTTTATTTCCTCCATT---AGCGGAGAGCGACATA-T--AT-------GTTA-----TTACATAAAGAACATATTAAACATGAAAAAAAAAACAAAGC--AAA-AAAACATA--CAAAA--GTATATCAATATTAA---ATAGAATAAAGCATACAGGA----C----A----CTT-A----ACATTTGAATTGCAAAACGCTACACC-CCTGTACTAACACTCGCAGATATACGCAATTACAGCCATACATGAATC--AA--GCGTGATGAG---G----------------TACA--------AG------------CAGAC------------ACGCATACAGACTGAA------AA--GGAA--ACATGCACAT--AT--ACT----AACGCCTTCACAG-A--CACA----TGAAT-------------ATATACATCCAC--AGTTTAA-GC-GCCAACTCAAAGATTTGTTTA-ATCA-CTATACAAAAT-----AA-AGTA----AA-TAAACACAGGCATATTATAATGGTTATTTCTTGTACAATCTTTTCACCGAATAAA---AAGGGGGAA-AA-C-TGAAAAT---AGTT-----TT-A----ACCATATCTGT---A-AATATTAAATGAAAGCTACATCAGTATGAATATA-TA--ACACTTAATAAG-------------CAT-----TCACT-GATGA-T------------ATCTCGCTCGTTAGAAGATTAATTCATAAGCATAATGTGAAATGAATTTACGACTATTTTC--AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAGCCCATAGCAAAGATGAGTTATTAGGGATTGCATATCGGTAGATATGAATCGTAGAAA-ACACTCGAATCCAAATACTTAATGAATATTATTCCAAAGAA--TTTGTCTGTTAGTTTCATTAACCGCACAGTCAAACACTA--A--ATGGAGAGATAGATCATTTGTACTAAGTCCACACTTATGACACGTTTGCCGGTAAGCATGAGAGTAGGTAAAACTTAATATTTTTATATTGCTCCTACATTTTTCAAGTAAAAGAGGATATTCCTTTCTAAGAGACCAAATCGGCGAGATAATGCCAAGCGATGAGTGATAAAAACTAAAACGATGGAGATTCTCATCATCGCTCAATCTTAAGCTCAATGATAATTGCTCGGATGTATCtttcgaaaatt
gi|5 : ATATTCATTATTCCCTCCATT---AGTAGAAGGCGACATA-T--AC-------GTTA-----TTACATAAAGAACATATTAAACATGAACATGAG--TA--GC--AAA-AAT-CATA--CAGAA--ATATATCAATATTAA---ATAGAGTAAAGCATACAGGA----C----A----CTT-A----ACACTTGAATTGCAAATCGCTACACCAC-TGCACTAACACTCGCAGATACACGCAATTACAGACATACATGAA-C--AAAAGCGTGATGAG---GTATAAGCATACACGCATACAGACTAAAAAG------------CAAAC------------ACGCACATATACTCACTCCTTCA----CAG--ACACATGAAT--ATGAACAAAAACATGAATGCATAC-ATTCACAACTTTAGA--------------AT---CA---AC--C---CAAAGCTG--------------TGTTTA-ATCA-CCATACAAAAT-----AA-AATA----AAATAAACACAGGCATATTACAATGGTTATTTCTTGTACAATCTTTTCACCGAGTAAA---CAGGGCAAA-AA-C-TAAACAT---AGTT-----TT-A----ACCATGTCTGT---A-AATATTAAATGAAAGTTAAATCAGTATCACTATA-TA--ACACTTAATATGTATTCACTGGTGACATCTCGCTCGCTAGAAGA-TTAATTCATAAGCATCTCGCTCGCTAGAAGATTAATTCATAAGCATACTATGGAATGAAATTACGACTATTTTC--AGACATAAGCATTGCTCAGTTTTCAGCTGAAGTATTTTGTTTAACC-ATAGCAAAGATGAGTTATTTGGGATTGTATATCGGTAGATATGAATTGTAGAAA-ACACTCGAATCCAAATACTGAATGAATATTATTCCAAATCA--TTTGTCTGTTaa
gi|6 : T---CA---ACT-A---AAA-GCTA--------------TGTTTA-ATCA-TTATACAAAAT-----AA-AGTA----AAATAAACACAGGCATATTACGATGGTTATTTCTTGTACAATCTTTTTACCGAGTTAA---CAGGGAAAA-AA-C-TGAAAAG---AGTT-----TT-A----ACCATGTCTGT---A-AATATTAAATGAAAGTTACATCGGTATGAATATA-TA--ACACTTAATATG-------------CAT-----TCACT-GATGA-T------------ATATCGCTCGTTAGAAGATTAATTCATAAGCATATTGTGAAATGAATTTACGACTATTTT---AGACATAAGTCTTGCTCAGTTTTCAGCTGAAGTATTTTGTTTTACCAATAGCAAAGATGAGTTATTTGGGATTGCATATCGGTAAATATTAATCGTAGAAA-ACACTCGAATCCAAATACTGAATGAATATTATTCCAAACCATTTTTGTCTGTTAGTTTCATTAACCGCACAATCAAACACTATCATTATGGAGAGATAGTTCATTTGTACAAAGTCCACACTTATGACACGCTTGCCGGTAAGCATACGAGTAGGTAATACTTAATATTTTTgcgtcgtcataccaacaaagactgttagtgtttaaaaata
gi|7 : ccacagttttagcgTATATTCTTTATTTCTTCAATA---AAATGATACCAACATA-T--AT-------GTAA-----TTACATAAAGAACATAGTAAACATGAATATGAG--CA--TC---AA-ATCACATA--CAAAA--ATATATCAATATTAA---AAAGAGTAAAGCATACAGGA----CAATTA----CTT-A----ACATTTGAATTGTAGATCGTTACA---T-TGCACTAACAC-------TAAACGTAATT-TGG-------TAAAT-------GC------AG---------------------ACA--------CG------------CAGAC-----------------TA---ACTAGC------AA--GCAT--ACACGCGCAT--AT--ATT----CACGCATTCACAG-A--CACA----TGGAT-------------AT---GA---AC--A---CAA-GC-A--------------TGATTA-GGAA-C-ATACATAGTC-T--AAGAGTA----TACTTAA---AGCTATAT--------TTATTTAATATACAA-----------AATAAA------GCAAAATAA-T-ACAAAAGAAAAGTT-----TT-A----ACTCTGTCTAT---T-AAAATTAAATGAACGTTACATCAGTATGAGTATA-TT--ACAATTAATATG-------------CAT-----TCACT-GAAGA-T------------ATCTCGCCCGTTAGAAGATTAATTCATAAGCGTATTGTCAAATGAATTTACAACCA
gi|8 : aaatTTATTTCATCCATT---AACTGAGAGCAACTTT-TTCAT-------GTTA-----TTACATAAAGAACATAATAAACATGAATATGAA--CA--AC---TA-ATCCCATA--CAAAG--ATATACCATTATTAA---ATAGAATAAAGCATACACGAAAATT----A----CTT-A----ATA-TTGAAATACAGAGCGCTATA
gi|9 : taattgCA-C-A-ACACAATCTT--AA-TGTACATCAGCCAAACAAAATTATATTACAATGGTTAGTTCTTGTTCCATATTTTCGCTCAGAGAA---CAGAGAAAA-AA----GAAAAACAAAATT-------------ATTATTTCTATTTTATAGTTTTGAATGGAAGTCACAACAGTATGAGTGTATTAGTACCCTTATTATG-------------TAT-----TTATT-tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacatcgagaggctgagaatcaacataaagttttggttaactaatatacaacataaagcgaaataatacaagga