lowQualScore : 1 2222 77777777777 33333 9999999999999999999999999999999999999999999999999999999999999999999999999999999 11111111111 333
lowQualScore : 555 7 6 5 6 7 3 4 1111 7 11111111111 999 3 66666 3 1 0 1 1111111111111111111111111111111111111111111111111111111111111111111111111111111 3 44444444444 9 3 444 88888 8 0 3
lowQualScore : ... . . . . . . . .... . ........... ... . ..... . . . . ............................................................................... . ........... . . ... ..... . . .
lowQualScore : 555 8 0 0 0 3 0 4 3333 8 99999999999 999 6 11111 3 2 4 8 2222222222222222222222222222222222222222222222222222222222222222222222222222222 3 00000000000 0 3 555 44444 7 5 6
consensus : GCAGTATCAGAAAATTCCGATGTTATGTATAGGTAGAC-AGTTACTTTGAAATGGGGG-AGGTC-ATTTAACTCTTGGAAATTT--TT-TG-CCACTNA-TTTTA-TGTTAAATAT-TT-ACTT-TAATACTATTATTG-AC----TTTT---T-------ATGATA-ATTTTTTTT--T---A---------AA---CT--------T--------TA-AC------T----TATTGAACAGAAACAAC-AACAAAA-AA-G-T-ATAAAGGGAGG-TAATAAACTCTTA
Reference ( gi|2 ) : GCAGTATCAGAAAATTTCAATATCATGTATAGGTAGAC-ATTTACTTTGAAACGGGAG-AGGTC-ATTTAACTCCTGGAAA-----T-----CCACTGA-TTTTA-TGTTAAATAA-AT-ACTT-TAATACTATTATTG-AC----TGCT---T-------ATGATA-ATTTGTTTT--T---A---------AA---CT--------T--------TA-AC------T----TATCGAACAGAAACAAC-AACAAAATAA-G-T-ATAAAGAGAGG-TAATAAACTCTTA
gi|4 : GCAGTATCAGAAAATTTCGATTTTATGTATAATTTTAC-ATTTACTTTGAAATGAGGG-AGGACAATATAAATCTTGGAAATTTCGT-----CCAGTAA-TTTTA-TATTAAATAT-TT-AC-T-TAATACTATACTTG-AC----TATT---T-------TTTGTG-ATATTTTTC--T---A---------AA---CC--------T--------AT-AC------A----TGTTA---AGAAACAAC-AACAAAA-AT-G-T-TTAAAGGGATG-TAATAAACTCTT
gi|6 : GCAGTATCAGACAATTCTAATGTTAT--ATAGGTAGAC-AGT--------AATGGTGG-AGTTC-ATTTAACTCTTAGAAATTTTGT-----CCATTAA-TTTTA-CGTTAAATA-------TT-TA---------------------CT---T-------AAAATATATCCATATT----------------AA---CT--------T-------------------------ATTGAACAGAAACAAC-AACAAA--AA-A-T-ATAAAAGGAGG-TAATAAACTCTT
gi|16 : aGCAGTATCAGAAAATTCCCATGTTATGTTTAGGTAGACTATT
gi|1 : aCAGTATCAGAAATGTCCATTGTTATGTATAGGTAGA--AGTTACTTTGAAATAAGGG-AATTC-ATTTAACTCTCGGAAATTTTGT-----CCACTTA-TTTTATTGTTATATAT-TT-ATTT-TAATAATGTTATTGAAT----TGTT---TTTATTTAATGAT--ATTT-TTTT--A---A---------AA---CTATACATA-T--------TA-AC------T----TAATAAACAGAAATAAT-TACAA---AA-A-T-ATAAAG-GATG-TAATAAGCTCTTAgc
gi|11 : AGTATCAGAAAAGTCTGATGTTGTGTATAGGTAGAC-AGTTGCTTTTAATGGAGGG-AAA-C-ATTTAACTCTTGGAAA-----TTGTGCCCACATA-TGTTA-TGTTCAATAT-TT-ACTT-AAGTACAATGATa
gi|5 : GTATGAGAAAATTCGGATGTTGTGTATAGGTAGGC-AGTTACTTTGAAATAGG-G-GGGT------------TGG--G-----T-----TC----A-TTTT--TGTTTTATTA-TTGACTT-T-----TCTTTTT---T----TTTT---T-------ATGATA-ATTTTTTTT--TTTAA---------AA---C------------------TAGAC------A----CAT-GAAC----ATAAT-TACAAAAAAA-A-A-ATAAAGGGAGGATA--AAACTCTTA
gi|3 : TTATGTATATGCAGAC-AGTTACTTTGAAATGGGTG-GGGG--ATTTAACTTTTGGAAA-----TTTTGTCCACTTG-TTCTA-TGTTAGATAT--T-ACTT-TAATACTAATATTG-A-----TGTT---TTT-----ATGATA-AATT-CTTT--A---A---------AA---CC--------TATACATA-TA-AC------T----TATTGAACAGTAACAAC-AGCAAGAAAA-A-A-ATAAAGGGATG-TAATAAACCCTT
gi|12 : gagaaaaatgaggGTAGAC-ATTTACTTTAAAATATGTGTATG---ATTTAACTCGTGGAAATTTG-T-----TCACTAATTTTTA-TGCTAACTAT-TT-ACTA-TGGTTATATCAT----C----T--T---T-------ATGGTT-ATTATTTTT--T---A---------AA---CT--------T--------
gi|9 : GGGG-AG-TC-ATTTAACTCTTGGAAA-----TTTTGTCCACTTA-TGTTA-TGTTAAATAT-TT-ACTT-TAATAAAATTACTG-AC----------------------ATA-GT------------------------------------------------A-AC------T----TATTGAACAGAAACAAC-AACAAA--AA-G-TAATAAAGGGATG-TAATAAACTCTTA
gi|7 : -AGGGC-ATT--ACTCTTG------------------CTG-----TA-T-TTGAACAACAA-ACTC-TAATACTGTTACTG-ACCTTTTTTC---T-------ATGATA-TTTTTTTTTTAT---A---------AA---CC--------TATACA---TA-ATATTTAGT----CATCAAACAGAAA-AA--AACAAAAAAAGG-G-ATAA--AGAGG-TTATAAACTCTTAa
gi|10 : ttggcacagagtaTCTTGGAAA-----TTTTGTCCACTAA-TTTTA-TGTTAAACAT-TA-ACTTCTAA-ACTATAATTG-AC----TTTTTTAT-------ATGATA-GTTTTTTTTA-T---A---------AA---ATTTACATACT--------TA-AC------T----TATTGCACAGAAACAAT-Aaa
gi|8 : -TTTTA-TGTTAAATAT-TT-ACTT-TTATACTATCATTG-AC----TTTT---T--------TCATT-ATATCTTTT--T---AAAAATACATAA---TTTATTA---T--------TA-AC------T----TATTGAAAAGAAGTAACAAACAA---AA-GCT-ATAAAGTGAGG-TAATAAACT
gi|13 : ttttaaattgtgtctagtacTT-TAAAACTACTATTA-ACAA--TTTT---T-------ATGA-A-ACTT-TTTT--T---A---------AA---CC--------TATACAGGCTA-AT------TAATGTATTGAAAAGAAACAAC-AG------AA-A-T-ATAAAGGGAAG-TTATAAA
gi|15 : tgttggaaaTTTT--T---A---------AAAACCTATACATG-T--------TA-AC------T----TATAGAACAGAAACAAC-AACAAAA-AA-G-T-GTAAAGGGAGA-AAATAA
gi|14 : --------T--------TA-AC------T----TATAGAACAGAAACAAC-AACAAA--AA-T-T-ATAAAAGGAGG-TAATAAACTC
Alignments
lowQualScore : 2222 4444 22222222 1111 777777777777777777777777777777777777777777
lowQualScore : 0 00 0 4 4 1111 2222 2 3 3 6 1 555 1 33333333 555 44 2222 222222222222222222222222222222222222222222 3 9999999 3 55 3 3 77777 1 3
lowQualScore : . .. . . . .... .... . . . . . ... . ........ ... .. .... .......................................... . ....... . .. . . ..... . .
lowQualScore : 2 55 1 4 4 6666 5555 4 6 6 2 5 444 0 55555555 888 66 2222 666666666666666666666666666666666666666666 1 5555555 1 88 3 3 44444 0 3
consensus : GCAGTATCAGAAAATTCCGATGTTATGTATAGGTAGACAGTTACTTTGAAATGGG-GG-AGGTC-ATTTAACTCTTGGAAATTTTGT--CCACTNATTTT-A-TGTTAAATATTTACTT-TAATACTAT---TATTGA---C----TTTT---TA--TGATAAT-TTTTTTT--T---A---------AA---CT-----------T-------TA-AC------TTATTGAACAG-AAACAACAACAA-AA-AAG-T-ATAAAGGGAGGTAAT-AAACTCTTA
Reference ( family-648 ) : GCAGTATCAGAAAATTCCGATGTTATGTATAGGTAGACAGTTACTTTGAAATGGG-GG-AGGTC-ATTTAACTCTTGGAAATTTTTTG-CCACTNATTTT-A-TGTTAAATATTTACTT-TAATACTAT---TATTGA---C----TTTT---TA--TGATAAT-TTTTTTT--T---A---------AA---CT-----------T-------TA-AC------TTATTGAACAG-AAACAACAACAA-AA-AAG-T-ATAAAGGGAGGTAAT-AAACTCTTA
gi|1 : CAGTATCAGAAATGTCCATTGTTATGTATAGGTAGA-AGTTACTTTGAAATAAG-GG-AATTC-ATTTAACTCTCGGAAATTTTGT--CCACTTATTTT-ATTGTTATATATTTATTT-TAATAATGT---TATTGAATTG----TTTT---TATTTAATGATATTTTTTT--A---A---------AA---CTATACATA----T-------TA-AC------TTAATAAACAG-AAATAATTACAA-AA-A---T-ATAAA-GGATGTAAT-AAGCTCTTA
gi|10 : TCTTGGAAATTTTGT--CCACTAATTTT-A-TGTTAAACATTAACTTCTAA-ACTAT---AATTGA---C----TTTTTTATA--TGATAGT-TTTTTTTA-T---A---------AA---ATTTACATAC---T-------TA-AC------TTATTGCACAG-AAACAATAa
gi|11 : AGTATCAGAAAAGTCTGATGTTGTGTATAGGTAGACAGTTGCTTTT-AATGGA-GG-GAAAC-ATTTAACTCTTGGAAA--TTGTGCCCACATATGTT-A-TGTTCAATATTTACTT-AAGTACAAT---GAT
gi|12 : GTAGACATTTACTTTAAAATATG-TGTATG---ATTTAACTCGTGGAAATTTGTT---CACTAATTTTTA-TGCTAACTATTTACTA-TGGTTATAT---CATC------------TT---TA--TGGTTAT-TATTTTT--T---A---------AA---CT-----------T-------
gi|13 : TT-TAAAACTAC---TATTAA---CAA--TTTT---TA--TGA-AAC-TTTTTTT--A---A---------AC---CTATACAGGCTAAT-------TA-AT------GTATTGAAAAG-AAACAAC------AG-AAA-T-ATAAAGGGAAGTTAT-AAA
gi|14 : tgttggaaa-----------T-------TA-AC------TTATAGAACAG-AAACAACAAC-A-AA-AAT-T-ATAAAAGGAGGTAAT-AAACTC
gi|15 : atgttataggtggagttcatttaactcttaaaacctatacataTTTT--T---A---------AAAACCTATACATG----T-------TA-AC------TTATAGAACAG-AAACAACAACAA-AA-AAG-T-GTAAAGGGAGAAAAT-AA
gi|16 : GCAGTATCAGAAAATTCCCATGTTATGTTTAGGTAGAC
gi|2 : aGCAGTATCAGAAAATTTCAATATCATGTATAGGTAGACATTTACTTTGAAACGGG-AG-AGGTC-ATTTAACTCCTGGAAAT-------CCACTGATTTT-A-TGTTAAATAAATACTT-TAATACTAT---TATTGA---C----TGCT---TA--TGATAAT-TTGTTTT--T---A---------AA---CT-----------T-------TA-AC------TTATCGAACAG-AAACAACAACAA-AATAAG-T-ATAAAGAGAGGTAAT-AAACTCTTAtattgc
gi|3 : AGAAAAAT--GAGGTTATGTATATGCAGACAGTTACTTTGAAATGGGTGG-GGG---ATTTAACTTTTGGAAATTTTGT--CCACTTGTTCT-A-TGTTAGATA-TTACTT-TAATACTAA---TATTGA---TG---TTTT---TA--TGATAA--ATTCTTT--A---A---------AA---CC-----------TATACATATA-AC------TTATTGAACAG-TAACAACAGCAAGAA-AAA-A-ATAAAGGGATGTAAT-AAACCCTT
gi|4 : gGCAGTATCAGAAAATTTCGATTTTATGTATAATTTTACATTTACTTTGAAATGAG-GG-AGGACAATATAAATCTTGGAAATTTCGT--CCAGTAATTTT-A-TATTAAATATTTAC-T-TAATACTAT---ACTTGA---CTAT-TTTT---TG--TGATA----TTTTTC--T---A---------AA---CC-----------T-------AT-AC------ATGTTA---AG-AAACAACAACAA-AA-ATG-T-TTAAAGGGATGTAAT-AAACTCTT
gi|5 : GTATGAGAAAATTCGGATGTTGTGTATAGGTAGGCAGTTACTTTGAAATAGG-GG-GG-----TTGGGTTC------ATTTTT---------GTTTT-A-T------TATTGACTT-T-----TCT---TTTT-----T----TTTT---TA--TGATAAT-TTTTTTT--TTTAA---------AA---C--------------------TAGAC------ACA-TGAACAT--AATTACAAAAA-AA-AA----ATAAAGGGAGG--ATAAAACTCTTA
gi|6 : GCAGTATCAGACAATTCTAATGTTAT--ATAGGTAGACAGT--------AATGGT-GG-AGTTC-ATTTAACTCTTAGAAATTTTGT--CCATTAATTTT-A-CGTTAAATATTTACTTAAAATA-TATCCATATTAA---C----TTAT---TG---AACAG---------------A---------AA---C---------------------A-AC-------------------AACAA----AA-AA-----T-ATAAAAGGAGGTAAT-AAACTCTT
gi|7 : aACTC-TAATACTGT---TACTGA---CCTTTTTTC---TA--TGATATT-TTTTTTTTAT---A---------AA---CC-----------TATACA--TA-ATATTTAGTCATCAAACAGAAAAAAACAA-AA-AA-AGG-G-ATAAA--GAGGTTAT-AAACTCTTA
gi|8 : ttggcacagagtaagggcattactcttgctgtatttgaacaacaaTTTT-A-TGTTAAATATTTACTT-TTATACTAT---CATTGA---C----TTTT---T---TCATTAT-ATCTTTT--T---AAAAATACATAA---TTTATTA------T-------TA-AC------TTATTGAAAAG-AAGTAACAA-AC-AA-AAGCT-ATAAAGTGAGGTAAT-AAACTaa
gi|9 : ttttaaattgtgtctagtacGG-GG-AG-TC-ATTTAACTCTTGGAAATTTTGT--CCACTTATGTT-A-TGTTAAATATTTACTT-TAATAAAAT---TACTGA---C-----------------ATAG---------------------------------------------------TA-AC------TTATTGAACAG-AAACAACAAC-A-AA-AAG-TAATAAAGGGATGTAAT-AAACTCTTA
Alignments
lowQualScore : 2222 22222222 1111 777777777777777777777777777777777777777777
lowQualScore : 0 00 4 4 1111 55 1 3 3 6 1 555 33333333 555 44 2222 222222222222222222222222222222222222222222 3 9999999 3 55 3 3 77777 1 3
lowQualScore : . .. . . .... .. . . . . . ... ........ ... .. .... .......................................... . ....... . .. . . ..... . .
lowQualScore : 2 55 4 4 6666 00 0 6 6 2 5 444 55555555 888 66 2222 666666666666666666666666666666666666666666 1 5555555 1 88 3 3 44444 0 3
consensus : GCAGTATCAGAAAATTCCGATGTTATGTATAGGTAGACAGTTACTTTGAAATGGG-GG-AGGTC-ATTTAACTCTTGGAAATTTTGTCCA--CTNA-TTTTA-TGTTAAATATTTACTT-TAATACTAT---TATTGA---C----TTTT---TA--TGATAAT-TTTTTTT--T---A---------AA---CT-----------T-------TA-AC------TTATTGAACAG-AAACAACAACAA-AA-AAG-T-ATAAAGGGAGGTAAT-AAACTCTTA
Reference ( family-648 ) : GCAGTATCAGAAAATTCCGATGTTATGTATAGGTAGACAGTTACTTTGAAATGGG-GG-AGGTC-ATTTAACTCTTGGAAATTTTGTCCA--CTNA-TTTTA-TGTTAAATATTTACTT-TAATACTAT---TATTGA---C----TTTT---TA--TGATAAT-TTTTTTT--T---A---------AA---CT-----------T-------TA-AC------TTATTGAACAG-AAACAACAACAA-AA-AAG-T-ATAAAGGGAGGTAAT-AAACTCTTA
gi|1 : CAGTATCAGAAATGTCCATTGTTATGTATAGGTAGA-AGTTACTTTGAAATAAG-GG-AATTC-ATTTAACTCTCGGAAATTTTGTCCA--CTTA-TTTTATTGTTATATATTTATTT-TAATAATGT---TATTGAATTG----TTTT---TATTTAATGATATTTTTTT--A---A---------AA---CTATACATA----T-------TA-AC------TTAATAAACAG-AAATAATTACAA-AA-A---T-ATAAA-GGATGTAAT-AAGCTCTTA
gi|10 : TCTTGGAAATTTTGTCCA--CTAA-TTTTA-TGTTAAACATTAACTTCTAA-ACTAT---AATTGA---C----TTTTTTATA--TGATAGT-TTTTTTTA-T---A---------AA---ATTTACATAC---T-------TA-AC------TTATTGCACAG-AAACAATAa
gi|11 : AGTATCAGAAAAGTCTGATGTTGTGTATAGGTAGACAGTTGCTTTTAA-TGGA-GG-GAAAC-ATTTAACTCTTGGAAATTGTGCCCA--CATA-TGTTA-TGTTCAATATTTACTT-AAGTACAAT---GAT
gi|12 : GTAGACATTTACTTTAAAATATG-TGTATG---ATTTAACTCGTGGAAA-TTTGTTCA--CTAATTTTTA-TGCTAACTATTTACTA-TGGTTATAT---CA------------TCTT---TA--TGGTTAT-TATTTTT--T---A---------AA---CT-----------T-------
gi|13 : TT-TAAAACTAC---TATTAA---CAA--TTTT---TA--TGA-AAC-TTTTTTT--A---A---------AC---CTATACAGGCTAAT-------TA-AT------GTATTGAAAAG-AAACAAC------AG-AAA-T-ATAAAGGGAAGTTAT-AAA
gi|14 : tgttggaaa-----------T-------TA-AC------TTATAGAACAG-AAACAACAAC-A-AA-AAT-T-ATAAAAGGAGGTAAT-AAACTC
gi|15 : atgttataggtggagttcatttaactcttaaaacctatacataTTTT--T---A---------AAAACCTATACATG----T-------TA-AC------TTATAGAACAG-AAACAACAACAA-AA-AAG-T-GTAAAGGGAGAAAAT-AA
gi|16 : GCAGTATCAGAAAATTCCCATGTTATGTTTAGGTAGAC
gi|2 : aGCAGTATCAGAAAATTTCAATATCATGTATAGGTAGACATTTACTTTGAAACGGG-AG-AGGTC-ATTTAACTCCTGGAAAT-----CCA--CTGA-TTTTA-TGTTAAATAAATACTT-TAATACTAT---TATTGA---C----TGCT---TA--TGATAAT-TTGTTTT--T---A---------AA---CT-----------T-------TA-AC------TTATCGAACAG-AAACAACAACAA-AATAAG-T-ATAAAGAGAGGTAAT-AAACTCTTAtattgc
gi|3 : AGAAAAAT--GAGGTTATGTATATGCAGACAGTTACTTTGAAATGGGTGG-GGG---ATTTAACTTTTGGAAATTTTGTCCA--CTTG-TTCTA-TGTTAGATA-TTACTT-TAATACTAA---TATTGA---TG---TTTT---TA--TGATAA--ATTCTTT--A---A---------AA---CC-----------TATACATATA-AC------TTATTGAACAG-TAACAACAGCAAGAA-AAA-A-ATAAAGGGATGTAAT-AAACCCTT
gi|4 : gGCAGTATCAGAAAATTTCGATTTTATGTATAATTTTACATTTACTTTGAAATGAG-GG-AGGACAATATAAATCTTGGAAATTTCGTCCA--GTAA-TTTTA-TATTAAATATTTAC-T-TAATACTAT---ACTTGA---CTAT-TTTT---TG--TGATA----TTTTTC--T---A---------AA---CC-----------T-------AT-AC------ATGTTA---AG-AAACAACAACAA-AA-ATG-T-TTAAAGGGATGTAAT-AAACTCTT
gi|5 : GTATGAGAAAATTCGGATGTTGTGTATAGGTAGGCAGTTACTTTGAAATAGG-GG-GG-------------TTGG-------GTTCATTTTTG-TTTTA-T------TATTGACTT-T-----TCT---TTTT-----T----TTTT---TA--TGATAAT-TTTTTTT--TTTAA---------AA---C--------------------TAGAC------ACA-TGAACAT--AATTACAAAAA-AA-AA----ATAAAGGGAGG--ATAAAACTCTTA
gi|6 : GCAGTATCAGACAATTCTAATGTTAT--ATAGGTAGACAGT--------AATGGT-GG-AGTTC-ATTTAACTCTTAGAAATTTTGTCCA--TTAA-TTTTA-CGTTAAATATTTACTTAAAATA-TATCCATATTAA---C----TTAT---TG---AACAG---------------A---------AA---C---------------------A-AC-------------------AACAA----AA-AA-----T-ATAAAAGGAGGTAAT-AAACTCTT
gi|7 : aACTC-TAATACTGT---TACTGA---CCTTTTTTC---TA--TGATATT-TTTTTTTTAT---A---------AA---CC-----------TATACA--TA-ATATTTAGTCATCAAACAGAAAAAAACAA-AA-AA-AGG-G-ATAAA--GAGGTTAT-AAACTCTTA
gi|8 : ttggcacagagtaagggcattactcttgctgtatttgaacaacaaAAATTGTGTCTA--GTAC-TTTTA-TGTTAAATATTTACTT-TTATACTAT---CATTGA---C----TTTT---T---TCATTAT-ATCTTTT--T---AAAAATACATAA---TTTATTA------T-------TA-AC------TTATTGAAAAG-AAGTAACAA-AC-AA-AAGCT-ATAAAGTGAGGTAAT-AAACTaa
gi|9 : ttttGG-GG-AG-TC-ATTTAACTCTTGGAAATTTTGTCCA--CTTA-TGTTA-TGTTAAATATTTACTT-TAATAAAAT---TACTGA---C-----------------ATAG---------------------------------------------------TA-AC------TTATTGAACAG-AAACAACAAC-A-AA-AAG-TAATAAAGGGATGTAAT-AAACTCTTA
Alignments
lowQualScore : 2222 22222222 1111 777777777777777777777777777777777777777777
lowQualScore : 0 00 4 4 1111 55 1 3 3 6 1 555 33333333 555 44 2222 222222222222222222222222222222222222222222 3 9999999 3 55 3 3 77777 1 3
lowQualScore : . .. . . .... .. . . . . . ... ........ ... .. .... .......................................... . ....... . .. . . ..... . .
lowQualScore : 2 55 4 4 6666 00 0 6 6 2 5 444 55555555 888 66 2222 666666666666666666666666666666666666666666 1 5555555 1 88 3 3 44444 0 3
consensus : GCAGTATCAGAAAATTCCGATGTTATGTATAGGTAGACAGTTACTTTGAAATGGG-GG-AGGTC-ATTTAACTCTTGGAAATTTTGTCCA--CTNA-TTTTA-TGTTAAATATTTACTT-TAATACTAT---TATTGA---C----TTTT---TA--TGATAAT-TTTTTTT--T---A---------AA---CT-----------T-------TA-AC------TTATTGAACAG-AAACAACAACAA-AA-AAG-T-ATAAAGGGAGGTAAT-AAACTCTTA
Reference ( family-648 ) : GCAGTATCAGAAAATTCCGATGTTATGTATAGGTAGACAGTTACTTTGAAATGGG-GG-AGGTC-ATTTAACTCTTGGAAATTTTGTCCA--CTNA-TTTTA-TGTTAAATATTTACTT-TAATACTAT---TATTGA---C----TTTT---TA--TGATAAT-TTTTTTT--T---A---------AA---CT-----------T-------TA-AC------TTATTGAACAG-AAACAACAACAA-AA-AAG-T-ATAAAGGGAGGTAAT-AAACTCTTA
gi|1 : CAGTATCAGAAATGTCCATTGTTATGTATAGGTAGA-AGTTACTTTGAAATAAG-GG-AATTC-ATTTAACTCTCGGAAATTTTGTCCA--CTTA-TTTTATTGTTATATATTTATTT-TAATAATGT---TATTGAATTG----TTTT---TATTTAATGATATTTTTTT--A---A---------AA---CTATACATA----T-------TA-AC------TTAATAAACAG-AAATAATTACAA-AA-A---T-ATAAA-GGATGTAAT-AAGCTCTTA
gi|10 : TCTTGGAAATTTTGTCCA--CTAA-TTTTA-TGTTAAACATTAACTTCTAA-ACTAT---AATTGA---C----TTTTTTATA--TGATAGT-TTTTTTTA-T---A---------AA---ATTTACATAC---T-------TA-AC------TTATTGCACAG-AAACAATAa
gi|11 : AGTATCAGAAAAGTCTGATGTTGTGTATAGGTAGACAGTTGCTTTTAA-TGGA-GG-GAAAC-ATTTAACTCTTGGAAATTGTGCCCA--CATA-TGTTA-TGTTCAATATTTACTT-AAGTACAAT---GAT
gi|12 : GTAGACATTTACTTTAAAATATG-TGTATG---ATTTAACTCGTGGAAA-TTTGTTCA--CTAATTTTTA-TGCTAACTATTTACTA-TGGTTATAT---CA------------TCTT---TA--TGGTTAT-TATTTTT--T---A---------AA---CT-----------T-------
gi|13 : TT-TAAAACTAC---TATTAA---CAA--TTTT---TA--TGA-AAC-TTTTTTT--A---A---------AC---CTATACAGGCTAAT-------TA-AT------GTATTGAAAAG-AAACAAC------AG-AAA-T-ATAAAGGGAAGTTAT-AAA
gi|14 : tgttggaaa-----------T-------TA-AC------TTATAGAACAG-AAACAACAAC-A-AA-AAT-T-ATAAAAGGAGGTAAT-AAACTC
gi|15 : atgttataggtggagttcatttaactcttaaaacctatacataTTTT--T---A---------AAAACCTATACATG----T-------TA-AC------TTATAGAACAG-AAACAACAACAA-AA-AAG-T-GTAAAGGGAGAAAAT-AA
gi|16 : GCAGTATCAGAAAATTCCCATGTTATGTTTAGGTAGAC
gi|2 : aGCAGTATCAGAAAATTTCAATATCATGTATAGGTAGACATTTACTTTGAAACGGG-AG-AGGTC-ATTTAACTCCTGGAAAT-----CCA--CTGA-TTTTA-TGTTAAATAAATACTT-TAATACTAT---TATTGA---C----TGCT---TA--TGATAAT-TTGTTTT--T---A---------AA---CT-----------T-------TA-AC------TTATCGAACAG-AAACAACAACAA-AATAAG-T-ATAAAGAGAGGTAAT-AAACTCTTAtattgc
gi|3 : AGAAAAAT--GAGGTTATGTATATGCAGACAGTTACTTTGAAATGGGTGG-GGG---ATTTAACTTTTGGAAATTTTGTCCA--CTTG-TTCTA-TGTTAGATA-TTACTT-TAATACTAA---TATTGA---TG---TTTT---TA--TGATAA--ATTCTTT--A---A---------AA---CC-----------TATACATATA-AC------TTATTGAACAG-TAACAACAGCAAGAA-AAA-A-ATAAAGGGATGTAAT-AAACCCTT
gi|4 : gGCAGTATCAGAAAATTTCGATTTTATGTATAATTTTACATTTACTTTGAAATGAG-GG-AGGACAATATAAATCTTGGAAATTTCGTCCA--GTAA-TTTTA-TATTAAATATTTAC-T-TAATACTAT---ACTTGA---CTAT-TTTT---TG--TGATA----TTTTTC--T---A---------AA---CC-----------T-------AT-AC------ATGTTA---AG-AAACAACAACAA-AA-ATG-T-TTAAAGGGATGTAAT-AAACTCTT
gi|5 : GTATGAGAAAATTCGGATGTTGTGTATAGGTAGGCAGTTACTTTGAAATAGG-GG-GG-------------TTGG-------GTTCATTTTTG-TTTTA-T------TATTGACTT-T-----TCT---TTTT-----T----TTTT---TA--TGATAAT-TTTTTTT--TTTAA---------AA---C--------------------TAGAC------ACA-TGAACAT--AATTACAAAAA-AA-AA----ATAAAGGGAGG--ATAAAACTCTTA
gi|6 : GCAGTATCAGACAATTCTAATGTTAT--ATAGGTAGACAGT--------AATGGT-GG-AGTTC-ATTTAACTCTTAGAAATTTTGTCCA--TTAA-TTTTA-CGTTAAATATTTACTTAAAATA-TATCCATATTAA---C----TTAT---TG---AACAG---------------A---------AA---C---------------------A-AC-------------------AACAA----AA-AA-----T-ATAAAAGGAGGTAAT-AAACTCTT
gi|7 : aACTC-TAATACTGT---TACTGA---CCTTTTTTC---TA--TGATATT-TTTTTTTTAT---A---------AA---CC-----------TATACA--TA-ATATTTAGTCATCAAACAGAAAAAAACAA-AA-AA-AGG-G-ATAAA--GAGGTTAT-AAACTCTTA
gi|8 : ttggcacagagtaagggcattactcttgctgtatttgaacaacaaAAATTGTGTCTA--GTAC-TTTTA-TGTTAAATATTTACTT-TTATACTAT---CATTGA---C----TTTT---T---TCATTAT-ATCTTTT--T---AAAAATACATAA---TTTATTA------T-------TA-AC------TTATTGAAAAG-AAGTAACAA-AC-AA-AAGCT-ATAAAGTGAGGTAAT-AAACTaa
gi|9 : ttttGG-GG-AG-TC-ATTTAACTCTTGGAAATTTTGTCCA--CTTA-TGTTA-TGTTAAATATTTACTT-TAATAAAAT---TACTGA---C-----------------ATAG---------------------------------------------------TA-AC------TTATTGAACAG-AAACAACAAC-A-AA-AAG-TAATAAAGGGATGTAAT-AAACTCTTA
blockSeqs : T T GACA TT A T . C C CCA CCTTT TTA . GTT TAAAAATACATAATTTATTAT G ATTTAGT A CA G T AGCT G A
blockSeqs : . . AAC . T . . A C . CTAT . . ATT AAACCTATACAGGCTAAT . T . CA . . AGTA A .
blockSeqs : . . GTC . A . . . A . CAA . . ACT TAAAAACCTATACATGT . G . CA . . AAT G .
blockSeqs : . . TTC . G . . . C . TG . . ATT ATAAAATTTACATACT . T . CA . . ATT G .
blockSeqs : . . TC . T . . . C . C . . ATT AAAACCTATACATA . T . AA . . AGT G .
blockSeqs : . . G . A . . . C . C . . TTT TATAAACCTATACA . T . C . . AGT G .
blockSeqs : . . G . T . . . C . T . . ATA TTTAAAAC . T . A . . AAA G .
blockSeqs : . . . . A . . . C . C . . AA TAAACTT . A . A . . TGT A .
blockSeqs : . A . . . C . C . . G TAAACTT . A . A . . GGG G .
blockSeqs : . T . . . A . C . . G TAAACCT . T . C . . A G .
blockSeqs : . . . . . . . AAAC . T . . . . T . .
blockSeqs : . . . . . . .
blockSeqCons : C******* ** ATT* TAAAAACCTTACAT**************************** AGT**
originalCons : GCAGTATCAGAAAATTCCGATGTTATGTATAGGTAGACAGTTACTTTGAAATGGG-GG-AGGTC-ATTTAACTCTTGGAAATTTTGTCCA--CTNA-TTTTA-TGTTAAATATTTACTT-TAATACTAT---TATTGA---C----TTTT---TA--TGATAAT-TTTTTTT--T---A---------AA---CT-----------T-------TA-AC------TTATTGAACAG-AAACAACAACAA-AA-AAG-T-ATAAAGGGAGGTAAT-AAACTCTTA
finalCons : GCAGTATCAGAAAATTCCGATGTTATGTATAGGTAGACAGTTACTTTGAAATGGG-GG-AGGTC-ATTTAACTCTTGGAAATTTTGTCCA--CTNA-TTTTA-TGTTAAATATTTACTT-TAATACTAT---TATTGAC-------TTTT---TA--TGATAATT-TTTTTTTAAAAACCTTACAT----------------------------TA-AC------TTATTGAACAG-AAACAACAACAA-AA-AAGT--ATAAAGGGAGGTAAT-AAACTCTTA
Alignments
lowQualScore : 2222 1111111 55555555555555555555555555555555
lowQualScore : 0 00 4 4 1111 2 55 1 3 3 6 1 555 6666666 555 9999999 0 3 1 7777 99999999999999999999999999999999 0 33 3 5555 3 8888 1 3
lowQualScore : . .. . . .... . .. . . . . . ... ....... ... ....... . . . .... ................................ . .. . .... . .... . .
lowQualScore : 2 55 4 4 6666 1 00 0 6 6 2 5 444 4444444 888 3333333 7 3 6 2222 88888888888888888888888888888888 5 44 1 5555 3 9999 8 3
consensus : GCAGTATCAGAAAATTCCGATGTTATGTATAGGTAGACAGTTACTTTGAAATGGG-GG-AGGTC-ATTTAACTCTTGGAAATTTTGTCCA--CTNA-TTTTA-TGTTAAATATTTACTT-TAATACTAT---TATTGA---C---TTTT---T----A--TGATAA-TTTTTTTT-TAAAAAC------CTATA-C--A------T--TA---ACTTATTGAACAG-AAACAACAACAA-AA-AAG-T-ATAAAGGGAGGTAAT-AAACTCTTA
Reference ( family-648 ) : GCAGTATCAGAAAATTCCGATGTTATGTATAGGTAGACAGTTACTTTGAAATGGG-GG-AGGTC-ATTTAACTCTTGGAAATTTTGTCCA--CTNA-TTTTA-TGTTAAATATTTACTT-TAATACTAT---TATTGA---C---TTTT---T----A--TGATAA-TTTTTTTT-TAAAAAC------CT-TA-C--A------T--TA---ACTTATTGAACAG-AAACAACAACAA-AA-AAG-T-ATAAAGGGAGGTAAT-AAACTCTTA
gi|1 : CAGTATCAGAAATGTCCATTGTTATGTATAGGTAGA-AGTTACTTTGAAATAAG-GG-AATTC-ATTTAACTCTCGGAAATTTTGTCCA--CTTA-TTTTATTGTTATATATTTATTT-TAATAATGT---TATTGAATTG---TTTT---T----ATTTAATGA-TATTTTTT-TAAAA--------CTATA-CATA------T--TA---ACTTAATAAACAG-AAATAATTACAA-AA-A---T-ATAAA-GGATGTAAT-AAGCTCTTA
gi|10 : TCTTGGAAATTTTGTCCA--CTAA-TTTTA-TGTTAAACATTAACTTCTAA-ACTAT---AATTGA---C---TTTTTTAT----A--TGATAG-TTTTTTTTATAAAA--------TT-TA-C--ATAC---T--TA---ACTTATTGCACAG-AAACAATAa
gi|11 : AGTATCAGAAAAGTCTGATGTTGTGTATAGGTAGACAGTTGCTTTTAA-TGGA-GG-GAAAC-ATTTAACTCTTGGAAATTGTGCCCA--CATA-TGTTA-TGTTCAATATTTACTT-AAGTACAAT---GAT
gi|12 : GTAGACATTTACTTTAAAATATG-TGTATG---ATTTAACTCGTGGAAA-TTTGTTCA--CTAATTTTTA-TGCTAACTATTTACTA-TGGTTATAT---CA-----------TCTT---T----A--TGGTTA-TTATTTTT-TAAA
gi|13 : TT-TAAAACTAC---TATTAA---CAA-TTTT---T----A--TGA-AA-CTTTTTTT----AAAC------CTATA-C--AGGCTAAT--TA---ATGTATTGAAAAG-AAACAAC------AG-AAA-T-ATAAAGGGAAGTTAT-AAActt
gi|14 : tgttggaaaAAAAC------CTATA-C--A------TATTA---ACTTATAGAACAG-AAACAACAAC-A-AA-AAT-T-ATAAAAGGAGGTAAT-AAACTC
gi|15 : atgttataggtggagttcatttaactcttTTTT-TAAAAAC------CTATA-C--A------TGTTA---ACTTATAGAACAG-AAACAACAACAA-AA-AAG-T-GTAAAGGGAGAAAAT-AA
gi|16 : GCAGTATCAGAAAATTCCCATGTTATGTTTAGGTAGAC
gi|2 : aGCAGTATCAGAAAATTTCAATATCATGTATAGGTAGACATTTACTTTGAAACGGG-AG-AGGTC-ATTTAACTCCTGGAAA-----TCCA--CTGA-TTTTA-TGTTAAATAAATACTT-TAATACTAT---TATTGA---C---TGCT---T----A--TGATAA-TTTGTTTT-TAAA---------CT--------------T--TA---ACTTATCGAACAG-AAACAACAACAA-AATAAG-T-ATAAAGAGAGGTAAT-AAACTCTTAtattgc
gi|3 : AGAAAAAT--GAGGTTATGTATATGCAGACAGTTACTTTGAAATGGGTGG-GGG---ATTTAACTTTTGGAAATTTTGTCCA--CTTG-TTCTA-TGTTAGATA-TTACTT-TAATACTAA---TATTGA---TG--TTTT---T----A--TGATAA-ATTCTTT----AAAAC------CTATA-C--A------TA-TA---ACTTATTGAACAG-TAACAACAGCAAGAA-AAA-A-ATAAAGGGATGTAAT-AAACCCTT
gi|4 : gGCAGTATCAGAAAATTTCGATTTTATGTATAATTTTACATTTACTTTGAAATGAG-GG-AGGACAATATAAATCTTGGAAATTTCGTCCA--GTAA-TTTTA-TATTAAATATTTAC-T-TAATACTAT---ACTTGA---CTATTTTT---T----G--TGAT-A-TTTTTCT-----AAAC------CTATA-C--A------T--------GTTA------AG-AAACAACAACAA-AA-ATG-T-TTAAAGGGATGTAAT-AAACTCTT
gi|5 : GTATGAGAAAATTCGGATGTTGTGTATAGGTAGGCAGTTACTTTGAAATAGG-GG-GG-------------TTGG-------GTTCATTTTTG-TTTTA-T------TATTGACTT-T-----TCT---TTTT-----T---TTTT---T----A--TGATAATTTTTTTTT-TTAAAAC---------TA---------------G---ACACA-TGAACAT--AATTACAAAAA-AA-AA----ATAAAGGGAGG--ATAAAACTCTTA
gi|6 : GCAGTATCAGACAATTCTAATGTTAT--ATAGGTAGACAGT--------AATGGT-GG-AGTTC-ATTTAACTCTTAGAAATTTTGTCCA--TTAA-TTTTA-CGTTAAATATTTACTTAAAATA-TATCCATATTAA---C---TTAT---T----G------AA----------CAGAAAC--------------------------A---AC------AACAA-AA-----AATAT-AA-AAG----------GAGGTAAT-AAACTCTT
gi|7 : aACTC-TAATACTGT---TACTGA---C---CTTT---TTTCTA--TGATAT-TTTTTTTT-TATAAAC------CTATA-C--A------TAATATTTAGTCATCAAACAGAAAAAAACAA-AA-AA-AGG-G-ATAAA--GAGGTTAT-AAACTCTTA
gi|8 : ttggcacagagtaagggcattactcttgctgtatttgaacaacaaAAATTGTGTCTA--GTAC-TTTTA-TGTTAAATATTTACTT-TTATACTAT---CATTGA---C---TTTT---T-------TCATTA-TATCTTTT-TAAAAATACATAATT-TATT--A------T--TA---ACTTATTGAAAAG-AAGTAACAA-AC-AA-AAGCT-ATAAAGTGAGGTAAT-AAACTaa
gi|9 : ttttGG-GG-AG-TC-ATTTAACTCTTGGAAATTTTGTCCA--CTTA-TGTTA-TGTTAAATATTTACTT-TAATAAAAT---TACTGA---C---------------A--TAGTAA-CTT-----------------------------------------------ATTGAACAG-AAACAACAAC-A-AA-AAG-TAATAAAGGGATGTAAT-AAACTCTTA