lowQualScore : 1 22222 3 11 111 11111 11111111 111111 11 111 22 333333 111 2222222222 5555555555555 111111111111111 2222222222222 11111111111 1111111 111111111111 11 1111 111111111 33333333333333 11 555555555555555555 22222 2222222 222
lowQualScore : 0 00000 3 6 6 5 77 33 1 0 000 0 44444 4 1 4 9999 0 3 88888888 88 66 777 222222 55 2 00 555 777 777 4 8 4 88 000000 888 2222222222 3 6666666666666 999999999999999 111 1111111111111 22222222222 2 9999999 2 33 666 2 666666666666 444 1 2 66 3 7 4444 888888888 4 22222222222222 77 00 0 5 3 5 0 55 0 1 0 77 555555555555555555 2 3 66 3 88888 5 2 6 3333333 77 2 6 0 555 7
lowQualScore : . ..... . . . . .. .. . . ... . ..... . . . .... . . ........ .. .. ... ...... .. . .. ... ... ... . . . .. ...... ... .......... . ............. ............... ... ............. ........... . ....... . .. ... . ............ ... . . .. . . .... ......... . .............. .. .. . . . . . .. . . . .. .................. . . .. . ..... . . . ....... .. . . . ... .
lowQualScore : 0 00000 2 7 7 7 00 66 3 7 000 1 33333 4 0 4 4444 1 5 55555555 11 11 111 555555 00 0 88 777 000 888 0 0 0 88 444444 555 5555555555 1 5555555555555 222222222222222 999 6666666666666 77777777777 7 5555555 5 44 222 5 222222222222 777 5 7 99 1 8 0000 111111111 4 11111111111111 66 99 2 0 0 7 3 99 2 7 1 33 333333333333333333 8 5 88 5 22222 2 8 6 2222222 22 2 0 2 777 3
consensus : CCAT-TTACAA-----TAT-TTTAA-AT-CATATGGCAAAGAC-AT-GACAATAACATATTACAATCA---ATAC-----ATTTTG-AATTGTT-T----AAGTATCA------T-AGTA-TATA--TAAT-ATA---G-ATA--ACAN-A--GA---TGA-GAAA-C-AGTAAA-AA-AAATGTAAC-TNAA-AAAA-N-GCACA--CT-----GC-CGCGCG--------A--GCATGTAC---------------TCACTTTTTTCTACG-T-----T--TT-AA-----------GCAA-A--A-AA-GA-A--ATATG--AAA-TTA----------G---GTATTAATCAGATGGT-TACGAACCTTAAAT-GCTT-CATATATAAATTT---AGAAATATTAACAAG--------TAGTTTT-CGTCT----TTTCGTGGATAATAN-ATTN-ACAAATTTATTAGACG-TAGGCCATGCCACCCGTGGAATATATTTACGACGT--AAA------TCGTAGNATCTCGGACATATTAGTNAAA---A-TGGTATTCGGATTCAANA-----TTATTATTTGTACGCATTTGGCAAATTCTATTCTGTCTTCCGACACCAG-TATATCTTCCG
Reference ( gi|1 ) : CCAT-TTACAA-----TATCTTTAA-AT-CATATGGCAAAGAC-AT-GACAATTACATATTACAATCA---ATAC-----ATTTTG-AATTATT-T----AAGTATCA------T-AGTA-TATA--TAAC-ATA---G-ATA--ACAA-A--GA---TGA-G-AA-C-AGTAAA-AACAAATGTAAC-TAAA-AAAA-A-GCACA--TT-----AC-CGCGCG--------A-TAAATGTAC---------------TCACTTTTTTCTACG-T-----T--TT-AA-----------GCAA-A--A-AACGA-A--ATATG--AAA-TAA----------G---GTATTAATCAGATGGT-TACGAACCTTAAAA-GCTT-CATATATAAGTTT---GGAAATATTAACAAG--------TAGTTTT-CATCT----TTTATTGGATAATAA-ATTT-ACAAATTTATTAGACG-TAGGCCATGTCACCCGTGAAATATATTTACGACGT--AAC------TCGTGGAATCTTGGACATATTAGTCAAA---A-TGGTATTCAGACTCTATA-----TTATTGTTTGTATACGTTTGGCAAATTCTATTCTGTCTTTCGACACCTG-TATATCTTCCG
gi|7 : CCAT-TTACAT-----TAT-TTTAA-AT-CATATGACACAGAC-AT-AACATTGACATAGAAAAATCA---ATACATTTTATTTTG-AATTGTT-T----AGGTATCA------T-AGTA-TACA--TA-----------ATA--AC------GA---TAA-GAAA-C-CGTAAA-A
gi|5 : gtactaacacttcgtctacgaaaaaagatgataatatgcactaacatttcgtctacgaaagaaatagatatttaatgcatttcgCCAT-TTACAAAAAAATAT-TTCAA-AT-CATATGGTATAGAC-AT-GACAAAAACATAGTAAAATCATGTGTAT-----ATTTTG-AACAGTT-T----AAGTAACA------TAAGTA--ATA--TAGT-ATGCATG-ATATTACGATACTGA---TGA-GAAA-C-CGTAAA-AGCTTATTTAAT----A-GAAA-A-GTACA--C----------------------------ATG----------------------TTTTTTCTCC---------------A-----------GTAA-AG-A-AAGGG-AGGATATG--TAA-TTA----------G---GTATAAAAAAGATGGT-TACGCACCTTTAAT-GTTT-CTTATATtatttaacagacataaatgcaaactaacactatatctgttcaagaaatgaatatatgta
gi|17 : gtacttcaaaaatgtgttatgtaaaacacataaaattgcaacaacactcttgtatgaaaaagtcaacttttttcaacaaacatatgtctttgaCCAT-TTCAAA-----TAT-TTTAG-AT-TACATAGCAAAGAC-AG-GCCAGTAACATATTACAATCT---ATAC-----GTTTTG-AATAGTT-T----AAGTAACACACAGGT-AGTAGTATAAGTAAT-ATA---G-ATA--AGAA-A--
gi|6 : caatttatttttcaaaataaatatgcctttggCATATTACGA-----TATTTTTAA-AT-CATATGGCAAAGAC-AG-GACAATAATATTGTACAATAA---ATAC-----ATTTTG-AACTAGT-T---------------------------TA--TAAC-ACA---G-ATA--ACAA-A--AA---TG
gi|18 : attcaattcaattttattggcaaactatcaacaaaACAA-----TAT-TCTAA-AT-CATTTGGCAAAAAC-AG-TACAATAAAATATTACAATCA---ACAC-----CGTTTATAATTATTGT----AAcacactgccgcgcgcgcatattctcacttatttccacgtttttaagcaaagaaaaagcatgaaatttgatatcaataagatggttacgaactttaaatgcttcatatttatatttaaaaatattaataagtagttttcgataatatattaacaaatgtattaagagtccgcattactacttgtacacatttggcaaa
gi|14 : ttcgattcagtgcacttccaatttattggtaagttttctgcaaacataTTTAAGATATATATGGCAAAGGC-AT-GGCAATAACATA
gi|6 : atttaattcaattctattcaattttatcagcaagcatatgtcactggcaaTGGCAAA--CTATCAACAA--ACATATTACGAT-----AT--------TTTTA-AATCATA-TGGCAAAG----A------C-AGGA-CA-A--TAAT-ATT---GTACA--ATAA-A--TACATTTT-G-AA-CTAGTTTATAACACAGATAAC----A-AAAA-T-GCACA--CT-----GC-CGCGCG----------CGCATATTC---------------TCACTTATTTCCACG-T-----T--TTTAA-----------GCAA-A--G-AA-AA-A--GCATG--AAA-TTT----------G---ATATCAATAAGATGGT-TACGAACTTTAAAT-GCTT-CATATTTATATTT---AAAAATATTAATAAG--------TAGTTTT-C---------------GATAATAT-ATTA-ACAAATGTATTAacacgcacacttacacgcatatacttcctttttccgcgttgtttgagaaagaaatgtaataaggtaatatcccgatggttacgaactttaaatgctatatatataa
gi|4 : attcaattcaattttatATTAT-TATTACAATCA---ATGC-----ATTTTG-AATTGTT-T----AAGTATCA------A-AGTA-AATA--T-AT-AT-------TA--A-AT-A--TA---TGA-GAAA-C-AGTTAA-AG-AAATGAACC-TCACTTAAA-T-GCACACTTC-----AA-CGCGCG------------AATATAC---------------TAAATTTTT--CACGTT-----T--TT-AA-----------GCAA-A--G-AA-GACA--ATATT--ATG-TAATTTGTAGTTTG---GTATGAATTAGATGGT-AACTAACCTT-AAT-GTTA-AATATATAAATTTACCAAAAAAAC--ACAAA---------AGTTTT-CCTTA----TTTCGTGGAT-ATAATATTTAACAAATTCATTAGACG-TAGGCCATCCAATCCGTAAAACG---TTA--ATGT--------------TAGAATCGCGGACATATTAGTAATA---A-Tagagtccgcattactacttgtacacatttggcaaa
gi|2 : tatgaataaatatatTTG-AATTGTT-T----AAGTATCA------T-AGTA-TATA--TATTTATA---T-ATA--ACAT-A--TT---TGA---AA-C-AGTAAA-AA-AAATATAAC-TCAC-AAGA-ATGCACA--CT-----GC-CACGCG--------A--GCATATAC---------------TCACTTTTT-CTACG-T-----T--TTTAA-----------GCAG-A--T-A--GA-A--ATATG--AAA-TTA----------G---GTATTAATCAGATGGT-TACGAACCTTAAAT-GCTT-CATATATAAATTT---AGAAGTATTAACAAG--------TAGTTTT-CGTCT----TTTCGTAGATAATAA-AATA-ACACATTTATTAGACA-TAGGCCATGCCACCCGttattgtttttattttcatttaaacttaatct
gi|16 : TTG-AATTGTT-T----AAGTATCA------T-AGTA-TATA--TAAC-ATA---G-ATA--ACAT-A--GA---TGACA-AA-C-AGTAAA-AA-AAATGTAACACACA-AAAA-T-GCACA--CT-----GC-GGCGCG--------A--GCATGTAC---------------TCACTTTTTTCTACGTT-----T--TT-AA-----------GCAA-A--ACAACGA-A--AAAGGAAAAA-TTA----------G---GTATT----AGATGGT-TACGAACCTTAAAT-GCTgactctatacgatattattatttgtatacatttggcaaattctattctgtctttcgacaccagtatatcttccggattcaaccgcaagattatgtgaacttaatttattgtatcatagttttatttaaagatcggtgctaaatgaatttct
gi|21 : GTA-TATA--TAAC-ATA---G-ATA--ACAT-A--GA---TGA-GAAA-C-AGTAAA-A--AAATATAAC-TCAC-AAAA-ATGCATA--
gi|15 : ttcaaaatgtatatgttgtggtTA---A-GTA--AAAT-A--AA---TGA-G-AA-CCAGTAAA-AT---ATGTATC-TTAT-ATAATC-GCACA------------CGGGCAC-------A-AAAACGCACACATATTCCCCCTTTTCACTTTTTTCTAGG-CGAA--TGATT-AATCCTCCCGTGTGCTATA--A-AA--A-A--ATGTG------TAA----------GTATGTATTAATGAGATGGA-TACGAACATTAAAT-GCTT-AATATAc
gi|13 : ttTA--ATAC-A--GA---TGA-G-AATC-AGTGAA-AA-AAATGTAAC-TCAC-ATAA-ATGTACA--CT-----GC-CGCGCGGGT-----A-TAAA----C---------------TCACTTTTTC--ACG-TG----T--TT-AA-----------GTAA-A--G-AAAGA-A--ATATG--AAA-TTA----------G---GTATTAATCAGATGGC-TACAAACC-TAAAG-GCTT-CATTTATAAATTT---AGAAATA--ACCAAGATTGCATTTGATTTT-CATCCAAAATTTATT
gi|3 : aag-AG-C-AGTGAA-AA--AATGTATC-TGAA-TAAA-A-GCACA--CTCAAACACACGCACGGACGCATAA-TAAA-ATAC---------------ACACTTGTTC--ACG-TCTTTTT--TT-AA-----------TCAA-A--G-ATAGA-T--ATATG--TAA-TTT----------T---GTATTGATTAGATGGTATATG---CTT------CTTACAGAAATAAA-------GCACTATTGATCAA--------TAGATTT-CAGTA----TTCGT-GGATAAAAT-ATTA-ACAAACTTATT-GAAG-TGGACCAT---AATTGTGGAATATAATTATAACGT--AAA------TCGTAGCATCTCGGACATATTAGTTAAA-----TGGTATTGAGATTCAAAA-----ATTTAATTTGTACGCATATGGCAAATCCTATTCTATCTTCCGACACCAA-CATATCTT
gi|19 : gaATGTAACACACA-AAAA-T-GCACA--CT-----GC-CTCGCG--------A--GCATGTAC---------------TCCCTTTTTTCTACGTT-----T--TT-AA-----------GCAA-A--ACAACGA-A--ATATGA-AAA-TAA----------G---GTATTAATAAGATAGT-TAtttcgaatccaatgacaagtaataagtatacttgatata
gi|22 : TGTAACACACA-AAAA-T-GCACA--CT-----GC-CGCCCA--------A--GCATGTTC---------------TTGCGTTTTTCTACGTT-----T--TT-AA-----------GCAA-A--ACAACGA-A--A-ATG--AAA-T
gi|10 : atGTAACACACA-AAAA-T-GCACA--CT-----GC-CGCGCG--------AGTA--TGTAT---------------TCACTTTTTTCTACG-T-----T--TTTAA-----------GCAA-A--ACAACGA-A--ATATG--AAAATTA----------G---GTATTAATCAGATGGT-TA---ACCTAAAAATGCTT-CATATATAAATTT---AGAAATATTAATAAG--------TAGTTGT-CGTCC----TTTCGTGGATAATAA-ATTT-ACAAATATATTAGACG-TAGGCCATGCGTTCCGTGGAATATATTTACGACGT--AAta
gi|12 : A-AAAG-T-GCCCA--CT-----GC-CACGCG--------A--GCATGTAC---------------TCATTTTTTTCTAAG-T-----T--TTTGA-----------GCAA-A--G-AAAGA-A--ATATG--AAA-TTA----------G---ATATTAATTAGCTGGT-TACGAACCTTAAGT-GCTT-CATATATAAATTT---AGAAATATTAACAAG--------TAGTTTTCCGTCT----TTTCGTGGATAATAA-ATTC-ACAAATTCA-------------CATGCCACCCGTGGAATATATTTAg
gi|14 : tctcat-GCACAC-TT-----AC--ACGC--------------ATATAC---------------TT-CCTTTTTCCGCG-T-----TGTTT-GA-----------G-------A-AA-GA-A--ATGT----AA-TAA----------G---GTAATATCCCGATGGT-TACGAACTTTAAAT-GCTA-TATATATAAt
gi|20 : atttaattcaattctattcaattttatcagcaagcatatgtcactggcaatttaagatatatatggcaaaggcatggcaataacataacacCACATTTTGC-ACG-T-----T--CTGAA-----------GTAA-A--T-AA---------ATG--AAG-TGA----------G---GTATTGATCAGATTGT-TACGAACGCTATAC-GCTT-CATATATAAATTT---
gi|9 : gcaA-----------GCAA-AGAA-AATCA-A--ATGT----AA-TGA----------G----TATCATTCAGATGGT-TACGAACCTAAAAT-GATT-CCTATAGAATTCT---AGTAATATTAACAGG--------AATGTTT-CGTTT----TTCG-TGGATATCAT-GTTA-ACACATTTATTGGAAG-TTGGTCACGCCACTCGTAGACTACATTTACAATGTAAAACATTGTATCATAGGATCTAGGACATATTAG--AAACATA-TTGTATTCGGATTCTACA-----Ta
gi|8 : ttttccttA-A--ATATA--AAA-----------------------AATCAGATGGT-TACAAACCATAAAT-GTTT-C-----T---TTT---AGATAT-TTAGCAA--------------------CT----TT------ATAATGG-AGTT-A-------ATTCGATGATAAAC--TGTCAAC----AAATTTAT--GAGACAT--TAA------T------ATCTTGGACATTTTACTCAAA---AATGGTATTCGGATTGAAGA-----TTATTACGTGTACACATTTGGCAAAATATATTCTTTCTTTCGACA
gi|11 : CACTCGTGGGATATATTTACAACGA--AAA------TCATAGTATACCAGACATAAAAGTAAAAC--A-TGGTATTCTGATTTAACT-----TAATCATTTGAACGTATTTGGCAAATTCTGTTTTGTCTTCCAGCACCAGTTAT-TCTTCCgcacaagtaaattcaacctgaatagtaaaaaatattcactgata
gi|2 : TTAGACATA--GGCCA-------TGCCACCCGGACTCTATACGATATTATTATTTGTATACATTTGGCAAATTCTATTCTGTCTTTCGACACCAG-TATATCTTCCGagatttaatcacaacaactgaacgtttttcataatatattaatatatcgacatattttatgtgatcgataattaattttt
Alignments
lowQualScore : 22222 111 11111 111111 111 22222222 2222222 1 11111111111 111 11111 11111111 3333 111111 1
lowQualScore : 00000 6 6 5 5 22 000 0 44444 4 4 9999 0 5 777 6 0 555 444444 55 44 2 55 666 2 000 3 66 22222222 33 66666 66 888888 66 888888 9999999 0 0000000 77 0 11111111111 333 2 22222 55 0 888888 2 444 5555 0 2 666 2 4 77 2 1 66 1 1 3 1 5 1 1 2 0 88888888 88 1 0 77 44 3333 888888 1 3 0
lowQualScore : ..... . . . . .. ... . ..... . . .... . . ... . . ... ...... .. .. . .. ... . ... . .. ........ .. ..... .. ...... .. ...... ....... . ....... .. . ........... ... . ..... .. . ...... . ... .... . . ... . . .. . . .. . . . . . . . . . ........ .. . . .. .. .... ...... . . .
lowQualScore : 00000 7 7 7 7 00 000 1 33333 4 4 4444 5 0 888 4 8 888 111111 00 88 3 00 444 5 000 6 00 22222222 55 77777 88 222222 88 222222 3333333 5 9999999 33 7 99999999999 999 5 77777 66 6 222222 4 111 0000 8 7 444 0 4 33 9 8 11 0 0 4 4 0 9 8 0 4 11111111 33 0 3 99 77 6666 888888 0 2 0
consensus : CCATTTACAA-----TAT-TTTAAAT-CATATGGCAAAGAC-AT-GACAATAACATATTACAATCA---ATAC-----ATTTTG-AATTGTT-T----AAGTATCAT-A---GTATATATAAT-ATA---G-ATA--AC-ATA--GA---TGAGAAACAGT--AAAAA-A-AATGTAACTCACA-A-AAAT-GCACACT-----GC--CGC------GCGA--GCATG------TAC-------TCACTTTTTTCTACG-T-----T--TT-AA-----------GCAAA-A-A-A-G---A--AATATG--A---AA-T---TA----GGTATTAATCAGATGGTTACGAACCTTAAA-TGCTTCATATATAAATTT---AGAAATATTAACAAGTAGTTTT-C-GTCTTTTCGTGG--ATAATANATTNACAAATTTATTAGACG-TAGGCCATGCCACCCGTGGAATATATTTACGACGTAA--------ATCGTAGNATCTCGGACAT--ATTAGTCAAA----ATGGTATTCGGATTC-----NANATTATTATTTGTACGCATTTGGCAAATTCTATTCTGTCTTTCGACACCAGTATA-TCTTCCG
Reference ( family-599 ) : CCATTTACAA-----TAT-TTTAAAT-CATATGGCAAAGAC-AT-GACAATAACATATTACAATCA---ATAC-----ATTTTG-AATTGTT-T----AAGTATCAT-A---GTATATATAAT-ATA---G-ATA--AC-ANA--GA---TGAGAAACAGT--AAAAA-A-AATGTAACTNA-A-A-AAAN-GCACACT-----GC--CGC------GCGA--GCATG------TAC-------TCACTTTTTTCTACG-T-----T--TT-AA-----------GCAAA-A-A-A-G---A--AATATG--A---AA-T---TA----GGTATTAATCAGATGGTTACGAACCTTAAA-TGCTTCATATATAAATTT---AGAAATATTAACAAGTAGTTTT-C-GTCTTTTCGTGG--ATAATANATTNACAAATTTATTAGACG-TAGGCCATGCCACCCGTGGAATATATTTACGACGTAA--------ATCGTAGNATCTCGGACAT--ATTAGTNAAA----ATGGTATTCGGATTC-----AANATTATTATTTGTACGCATTTGGCAAATTCTATTCTGTCTTCCGACACCAGTATA-TCTTCCG
gi|1 : CCATTTACAA-----TATCTTTAAAT-CATATGGCAAAGAC-AT-GACAATTACATATTACAATCA---ATAC-----ATTTTG-AATTATT-T----AAGTATCAT-A---GTATATATAAC-ATA---G-ATA--AC-AAA--GA---TGAGAA-CAGT--AAAAACA-AATGTAACTAA-A-A-AAAA-GCACATT-----AC--CGC------GCGAT-AAATG------TAC-------TCACTTTTTTCTACG-T-----T--TT-AA-----------GCAAA-A-A-ACG---A--AATATG--A---AA-T---AA----GGTATTAATCAGATGGTTACGAACCTTAAA-AGCTTCATATATAAGTTT---GGAAATATTAACAAGTAGTTTT-C-ATCTTTTATTGG--ATAATAAATTTACAAATTTATTAGACG-TAGGCCATGTCACCCGTGAAATATATTTACGACGTAA--------CTCGTGGAATCTTGGACAT--ATTAGTCAAA----ATGGTATTCAGACTC-----TATATTATTGTTTGTATACGTTTGGCAAATTCTATTCTGTCTTTCGACACCTGTATA-TCTTCCG
gi|10 : GTAACACACA-A-AAAT-GCACACT-----GC--CGC------GCGA--GTATG------TAT-------TCACTTTTTTCTACG-T-----T--TTTAA-----------GCAAA-ACA-ACG---A--AATATG--A---AAAT---TA----GGTATTAATCAGATGGTTA---ACCTAAAAATGCTTCATATATAAATTT---AGAAATATTAATAAGTAGTTGT-C-GTCCTTTCGTGG--ATAATAAATTTACAAATATATTAGACG-TAGGCCATGCGTTCCGTGGAATATATTTACGACGTAA--------
gi|11 : CACTCGTGGGATATATTTACAACGAAA--------ATCATAGTATACCAGACAT--AAAAGTAAAAC---ATGGTATTCTGATTT-----AACTTAATCATTTGAACGTATTTGGCAAATTCTGTTTTGTCTTCCAGCACCAGT-TATTCTTCCg
gi|12 : CTCATA-A-AAGT-GCCCACT-----GC--CAC------GCGA--GCATG------TAC-------TCATTTTTTTCTAAG-T-----T--TTTGA-----------GCAAAGA-A-A-G---A--AATATG--A---AA-T---TA----GATATTAATTAGCTGGTTACGAACCTTAAG-TGCTTCATATATAAATTT---AGAAATATTAACAAGTAGTTTTCC-GTCTTTTCGTGG--ATAATAAATTCACAAATTCA-------------CATGCCACCCGTGGAATATATTTAagatttaatcacaacaactgaacgtttttcataatatattaatatatcgacatattttatgtgatcgataattaattttt
gi|13 : tTA--AT-ACA--GA---TGAGAATCAGT--GAAAA-A-AATGTAACTCA-C-ATAAAT-GTACACT-----GC--CGC------GCGG--GTATA------AAC-------TCACTTTTTC--ACG-TG----T--TT-AA-----------GTAAAGA-A-A-G---A--AATATG--A---AA-T---TA----GGTATTAATCAGATGGCTACAAACC-TAAA-GGCTTCATTTATAAATTT---AGAAATA--ACCAAGt
gi|14 : aagAT-TTAAGATATATATGGCAAAGGC-AT-GGCAATAACATAattgcatttgattttcatccaaaatttatt
gi|14 : atttaattcaattctattcaattttatcagcaagcatatgtcactggca-A-ACAC-GCACACT-----TA--CAC------GC------ATA------TAC-------TT-CCTTTTTCCGCG-T-----TGTTT-GA-----------G-----A-A-A-G---A--AATGT-------AA-T---AA----GGTAATATCCCGATGGTTACGAACTTTAAA-TGCTATATATATAAacacgcacacttacacgcatatacttcctttttccgcgttgtttgagaaagaaatgtaataaggtaatatcccgatggttacgaactttaaatgctatatatataa
gi|15 : atttaattcaattctattcaattttatcagcaagcatatgtcactggcaatttaagatatatatggcaaaggcatggcaataacatTA---A-GTA--AA-ATA--AA---TGAGAACCAGT--AAAAT-A---TGTATCTTA-T-A-TAATCGCACACG-----GG--CACAAAAACGCAC--ACATA------TTCCCCCTTTTCACTTTTTTCTAGG-CGAA--TGATT-AATCCTCCCGTGTGCTAT-A-A-A-A---A--AATGTG--T---AA-G---TA----TGTATTAATGAGATGGATACGAACATTAAA-TGCTTAATATA
gi|16 : ttTTG-AATTGTT-T----AAGTATCAT-A---GTATATATAAC-ATA---G-ATA--AC-ATA--GA---TGACAAACAGT--AAAAA-A-AATGTAACACACA-A-AAAT-GCACACT-----GC--GGC------GCGA--GCATG------TAC-------TCACTTTTTTCTACGTT-----T--TT-AA-----------GCAAA-ACA-ACG---A--AAAAGGAAA---AA-T---TA----GGTATT----AGATGGTTACGAACCTTAAA-TGCT
gi|17 : CCATTTCAAA-----TAT-TTTAGAT-TACATAGCAAAGAC-AG-GCCAGTAACATATTACAATCT---ATAC-----GTTTTG-AATAGTT-T----AAGTAACAC-ACAGGTA---GTAGT-ATA---A-GTA--AT-ATA--GA---TAAGAAA
gi|18 : caatttatttttcaaaataaatatgcctttggACAA-----TAT-TCTAAAT-CATTTGGCAAAAAC-AG-TACAATAAAATATTACAATCA---ACAC-----CGTTTATAATTATTGT----AA
gi|19 : ttcgattcagtgcacttccaatttattggtaagttttctgcaaacataATGTAACACACA-A-AAAT-GCACACT-----GC--CTC------GCGA--GCATG------TAC-------TCCCTTTTTTCTACGTT-----T--TT-AA-----------GCAAA-ACA-ACG---A--AATATGA-A---AA-T---AA----GGTATTAATAAGATAGTTA
gi|2 : TTG-AATTGTT-T----AAGTATCAT-A---GTATATATATTTATA---T-ATA--AC-ATA--TT---TGA--AACAGT--AAAAA-A-AATATAACTCACA-A-GAAT-GCACACT-----GC--CAC------GCGA--GCATA------TAC-------TCACTTTT-TCTACGTT-----T--TT-AA-----------GC-AG-A-T-A-G---A--AATATG--A---AA-T---TA----GGTATTAATCAGATGGTTACGAACCTTAAA-TGCTTCATATATAAATTT---AGAAGTATTAACAAGTAGTTTT-C-GTCTTTTCGTAG--ATAATAAAATAACACATTTATTAGACA-TAGGCCATGCCACCC--GGACTCTA--TACGA
gi|2 : CGTAG--------ATAATAAAATAAC--ACATTTATTAGACATAGGCCATGCCACCCGGACTCTATACGATATTATTATTTGTATACATTTGGCAAATTCTATTCTGTCTTTCGACACCAGTATA-TCTTCCGtattattatttgtatacatttggcaaattctattctgtctttcgacaccagtatatcttccggattcaaccgcaagattatgtgaacttaatttattgtatcatagttttatttaaagatcggtgctaaatgaatttct
gi|20 : ttgaattgtttaagtatcatagtatatatatttatatataacatatttgaaacagtaaaaaaaatataactcacaagaatgcacactgccacgcgagcatatactcactttttctacgtttttaagcagatagaaatatgaaattaggtattaatcagatggttacgaaccttaaatgcttcatatataaatttagaagtattaacaagtagttttcgtcttttCACATTTTGC-ACG-T-----T--CTGAA-----------GTAAA-T-A-A-----------ATG--A---AG-T---GA----GGTATTGATCAGATTGTTACGAACGCTATA-CGCTTCATATATAAATTT---Agattcaaccgcaagattatgtgaacttaatttattgtatcatagttttatttaaagatcggtgctaaatgaatttct
gi|21 : gca---GTATATATAAC-ATA---G-ATA--AC-ATA--GA---TGAGAAACAGT---AAAA-A-AATATAACTCACA-A-AAAT-GCATAC
gi|22 : ttcaaaatgtatatgttgtggtTGTAACACACA-A-AAAT-GCACACT-----GC--CGC------CCAA--GCATG------TTC-------TTGCGTTTTTCTACGTT-----T--TT-AA-----------GCAAA-ACA-ACG---A--AA-ATG--A---AA-T---TA----
gi|3 : atGAAGCAGT--GAAAA-A-A-TGTATCTGA-A-T-AAAA-GCACACTCAAACACA-CGC------ACGGACGCATAATAAAATAC-------ACACTTGTTC--ACG-TCTTTTT--TT-AA-----------TCAAA-G-ATA-G---A--TATATG--T---AA-T---TT----TGTATTGATTAGATGGT----------ATA-TGCTTCTTACAGAAATAA---AGCACTATTGATCAATAGATTT-CAGTATT--CGTGG--ATAAAATATTAACAAACTTATT-GAAG-TGGACCAT---AATTGTGGAATATAATTATAACGTAA--------ATCGTAGCATCTCGGACAT--ATTAGTTAAA-----TGGTATTGAGATTC-----AAAAATTTAATTTGTACGCATATGGCAAATCCTATTCTATCTTCCGACACCAACATA-TCTT
gi|4 : TATTACAATCA---ATGC-----ATTTTG-AATTGTT-T----AAGTATCAA-A---GTAAATAT-AT-AT-------TA--A--ATA--TA---TGAGAAACAGT--TAAAG-A-AATGAACCTCA-CTT-AAAT-GCACACT-----TCAACGC------GCGA----ATA------TAC-------TAAATTTTT--CACGTT-----T--TT-AA-----------GCAAA-G-A-A-G---AC-AATATT--ATGTAA-TTTGTAGTTTGGTATGAATTAGATGGTAACTAACCTT-AA-TGTTAAATATATAAATTTACCAAAAAAAC--ACAAA-AGTTTT-C-CTTATTTCGTGGATATAATAT-TTAACAAATTCATTAGACG-TAGGCCATCCAATCCGTAAA-----------ACGTTA--------ATGTTAGAATCGCGGACAT--ATTAGTAATA----ATtttcgaatccaatgacaagtaataagtatacttgatata
gi|5 : tatgaataaatatatattatCCATTTACAAAAAAATAT-TTCAAAT-CATATGGTATAGAC-AT-GACAAAAACATAGTAAAATCATGTGTAT-----ATTTTG-AACAGTT-T----AAGTAACATAA---GTA-ATATAGT-ATGCATG-ATATTACGATACTGA---TGAGAAACCGT--AAAAG-CTTATTTAAT----A-G-AAAA-GTACA---------------------------CATG--------------------TTTTTTCTCC---------------A-----------GTAAAGA-A-A-GGGAG--GATATG--T---AA-T---TA----GGTATAAAAAAGATGGTTACGCACCTTTAA-TGTTTCTTATATttattgtttttattttcatttaaacttaatct
gi|6 : gtacttcaaaaatgtgttatgtaaaacacataaaattgcaacaacactcttgtatgaaaaagtcaacttttttcaacaaacatatgtctttgaTGGCAAA--CTATCAACAA--ACATATTACGAT-----AT--------TTTTA-AATCATA-TGGCAAAG----AC-A---GGACA-ATAAT-ATT---GTACA--AT-AAA--TACATTTTGAACTAGTTTATAAC-A-CAGATAAC----A-A-AAAT-GCACACT-----GC--CGC------GCGC--GCATA------TTC-------TCACTTATTTCCACG-T-----T--TTTAA-----------GCAAA-G-A-A-A---A--AGCATG--A---AA-T---TT----GATATCAATAAGATGGTTACGAACTTTAAA-TGCTTCATATTTATATTT---AAAAATATTAATAAGTAGTTTT-C------------G--ATAATATATTAACAAATGTATTA
gi|7 : attcaattcaattttatCCATTTACAT-----TAT-TTTAAAT-CATATGACACAGAC-AT-AACATTGACATAGAAAAATCA---ATACATTTTATTTTG-AATTGTT-T----AGGTATCAT-A---GTATACATA-----------ATA--AC------GA---TAAGAAACCGT----AAA-A-TATTTAACAGA-C-ATAAAT-GCAAACT-----agagtccgcattactacttgtacacatttggcaaa
gi|8 : gtactaacacttcgtctacgaaaaaagatgataatatgcactaacatttcgtctacgaaagaaatagatatttaatgcatttcg---A--AATATA--A---AA-----------------AATCAGATGGTTACAAACCATAAA-TGTTTC-----T---TTT---AGATAT-TTAGCAA-------------CTTT--------ATAATGGAGTTA-------ATTCGATGATAAAC--TGTCA--------ACAAATTTATGA-G-AC--------AT--TAATATCTTGGACAT--TTTACTCAAAA---ATGGTATTCGGATTG-----AAGATTATTACGTGTACACATTTGGCAAAATATATTCTTTCTTTCGACAGCAaacactatatctgttcaagaaatgaatatatgta
gi|9 : A-----------GCAAA-G-A-A-A---ATCAA-ATG--T---AA-T---GA----G-TATCATTCAGATGGTTACGAACCTAAAA-TGATTCCTATAGAATTCT---AGTAATATTAACAGGAATGTTT-C-GT-TTTTCGTGG--ATATCATGTTAACACATTTATTGGAAG-TTGGTCACGCCACTCGTAGACTACATTTACAATGTAAAACATTGTATCATAGGATCTAGGACAT--ATTAG--AAACAT-ATTGTATTCGGATTC-----TACATcaagtaaattcaacctgaatagtaaaaaatattcactgata
Alignments
lowQualScore : 11111 2222222222 111 111111111 1 111111111 2222222 11111111111 111 11111 11111111 333333 11111 1
lowQualScore : 8 66666 5 5 5 1 1111111111 333 333333333 777 4 4 4 2 55 777 8 444 666 44 33 55 2 1 3 1 1 2 0 000000000 888888 66 888888 9999999 0 3333333 77 8 11111111111 333 2 22222 55 0 888888 2 444 5555 0 2 666 2 4 77 2 1 66 1 1 3 1 5 1 1 2 0 88888888 88 1 0 77 44 111111 1 1 66666 3 0
lowQualScore : . ..... . . . . .......... ... ......... ... . . . . .. ... . ... ... .. .. .. . . . . . . . ......... ...... .. ...... ....... . ....... .. . ........... ... . ..... .. . ...... . ... .... . . ... . . .. . . .. . . . . . . . . . ........ .. . . .. .. ...... . . ..... . .
lowQualScore : 0 77777 7 7 7 3 9999999999 888 222222222 000 0 0 0 1 66 000 4 999 444 66 66 00 5 6 6 8 3 5 6 000000000 222222 88 222222 3333333 1 6666666 33 0 99999999999 999 5 77777 66 6 222222 4 111 0000 8 7 444 0 4 33 9 8 11 0 0 4 4 0 9 8 0 4 11111111 33 0 3 99 77 666666 0 0 77777 2 0
consensus : CCAT-TTACAA-----TAT-TTT-AAAT-CATATGGCAAAGACATGACAATAACATA----------TTACAATCA---ATA---C-----ATTTT---G-AATT-GTT-TAAGTATCAT-A---GTATATATAAC-ATA---GATA--AC-ATA--GATGAGAAACAGTAAAAA-AAATGTAACTCACA-AAAATGCACACT-----GC--CGC------GCGA--GCATG------TAC-------TCACTTTTTTCTACGTT-----T--TT-AA-----------GCAAA-A-A-A-G---A--AATATG--A---AA-T---TA----GGTATTAATCAGATGGTTACGAACCTTAAA-TGCTTCATATATAAATTT---AGAAATATTAACAAGTAGTTTT-C-GTCTTTTCGTGG--ATAATANATTNACAAATTTATTAGACG-TAGGCCATGCCACCCGTGGAATATATTTACGACGTAA--------ATCGTAGNATCTCGGACAT--ATTAGTCAAA----A-TGGTATTCGGATTCNANA-----TTATTATTTGTACGCATTTGGCAAATTCTATTCTGTCTTTCGACACCAGTATA-TCTTCCG
Reference ( family-599 ) : CCAT-TTACAA-----TAT-TTT-AAAT-CATATGGCAAAGACATGACAATAACATA----------TTACAATCA---ATA---C-----ATTTT---G-AATT-GTT-TAAGTATCAT-A---GTATATATAAT-ATA---GATA--AC-ATA--GATGAGAAACAGTAAAAA-AAATGTAACTCACA-AAAATGCACACT-----GC--CGC------GCGA--GCATG------TAC-------TCACTTTTTTCTACG-T-----T--TT-AA-----------GCAAA-A-A-A-G---A--AATATG--A---AA-T---TA----GGTATTAATCAGATGGTTACGAACCTTAAA-TGCTTCATATATAAATTT---AGAAATATTAACAAGTAGTTTT-C-GTCTTTTCGTGG--ATAATANATTNACAAATTTATTAGACG-TAGGCCATGCCACCCGTGGAATATATTTACGACGTAA--------ATCGTAGNATCTCGGACAT--ATTAGTCAAA----A-TGGTATTCGGATTCNANA-----TTATTATTTGTACGCATTTGGCAAATTCTATTCTGTCTTTCGACACCAGTATA-TCTTCCG
gi|1 : CCAT-TTACAA-----TATCTTT-AAAT-CATATGGCAAAGACATGACAATTACATA----------TTACAATCA---ATA---C-----ATTTT---G-AATT-ATT-TAAGTATCAT-A---GTATATATAAC-ATA---GATA--AC-AAA--GATGAGAA-CAGTAAAAACAAATGTAACTAAAA-AAAA-GCACATT-----AC--CGC------GCGAT-AAATG------TAC-------TCACTTTTTTCTACG-T-----T--TT-AA-----------GCAAA-A-A-ACG---A--AATATG--A---AA-T---AA----GGTATTAATCAGATGGTTACGAACCTTAAA-AGCTTCATATATAAGTTT---GGAAATATTAACAAGTAGTTTT-C-ATCTTTTATTGG--ATAATAAATTTACAAATTTATTAGACG-TAGGCCATGTCACCCGTGAAATATATTTACGACGTAA--------CTCGTGGAATCTTGGACAT--ATTAGTCAAA----A-TGGTATTCAGACTCTATA-----TTATTGTTTGTATACGTTTGGCAAATTCTATTCTGTCTTTCGACACCTGTATA-TCTTCCG
gi|10 : GTAACACACA-AAAATGCACACT-----GC--CGC------GCGA--GTATG------TAT-------TCACTTTTTTCTACG-T-----T--TTTAA-----------GCAAA-ACA-ACG---A--AATATG--A---AAAT---TA----GGTATTAATCAGATGGTTA---ACCTAAAAATGCTTCATATATAAATTT---AGAAATATTAATAAGTAGTTGT-C-GTCCTTTCGTGG--ATAATAAATTTACAAATATATTAGACG-TAGGCCATGCGTTCCGTGGAATATATTTACGACGTAA--------
gi|11 : CACTCGTGGGATATATTTACAACGAAA--------ATCATAGTATACCAGACAT--AAAAGTAAAAC---A-TGGTATTCTGATTTAACT-----TAATCATTTGAACGTATTTGGCAAATTCTGTTTTGTCTTCCAGCACCAGT-TATTCTTCCg
gi|12 : CTCATA-AAAGTGCCCACT-----GC--CAC------GCGA--GCATG------TAC-------TCATTTTTTTCTAAG-T-----T--TTTGA-----------GCAAAGA-A-A-G---A--AATATG--A---AA-T---TA----GATATTAATTAGCTGGTTACGAACCTTAAG-TGCTTCATATATAAATTT---AGAAATATTAACAAGTAGTTTTCC-GTCTTTTCGTGG--ATAATAAATTCACAAATTCA-------------CATGCCACCCGTGGAATATATTTAagatttaatcacaacaactgaacgtttttcataatatattaatatatcgacatattttatgtgatcgataattaattttt
gi|13 : tTA--AT-ACA--GATGAGAATCAGTGAAAA-AAATGTAACTCACA-TAAATGTACACT-----GC--CGC------GCGG--GTATA------AAC-------TCACTTTTT--CACG-TG----T--TT-AA-----------GTAAAGA-A-A-G---A--AATATG--A---AA-T---TA----GGTATTAATCAGATGGCTACAAACC-TAAA-GGCTTCATTTATAAATTT---AGAAATA--ACCAAGt
gi|14 : aagAT-TTA-AGATATATATGGCAAAGGCATGGCAATAACATAACACGCACACTTACACGCAT--ATACTTC-----CTTTTTCCG-CGTT-GTT-TGAG----AA-A---G-AAATGTAAT-A-A---GGTA--AT-ATattgcatttgattttcatccaaaatttatt
gi|14 : atttaattcaattctattcaattttatcagcaagcatatgtcactggcaACATAACACGCACACT-----TA--CAC------GC------ATA------TAC-------TT-CCTTTTTCCGCG-T-----TGTTT-GA-----------G-----A-A-A-G---A--AATGT-------AA-T---AA----GGTAATATCCCGATGGTTACGAACTTTAAA-TGCTATATATATAAcccgatggttacgaactttaaatgctatatatataa
gi|15 : atttaattcaattctattcaattttatcagcaagcatatgtcactggcaatttaagatatatatggcaaaggcatggcaataTA---AGTA--AA-ATA--AATGAGAACCAGTAAAAT-A--TGTATCTTATA-TAATCGCACACG-----GG--CACAAAAACGCAC--ACATA------TTCCCCCTTTTCACTTTTTTCTAGG-CGAA--TGATT-AATCCTCCCGTGTGCTAT-A-A-A-A---A--AATGTG--T---AA-G---TA----TGTATTAATGAGATGGATACGAACATTAAA-TGCTTAATATA
gi|16 : ttTT---G-AATT-GTT-TAAGTATCAT-A---GTATATATAAC-ATA---GATA--AC-ATA--GATGACAAACAGTAAAAA-AAATGTAACACACA-AAAATGCACACT-----GC--GGC------GCGA--GCATG------TAC-------TCACTTTTTTCTACGTT-----T--TT-AA-----------GCAAA-ACA-ACG---A--AAAAGGAAA---AA-T---TA----GGTATT----AGATGGTTACGAACCTTAAA-TGCT
gi|17 : CCAT-TTCAAA-----TAT-TTT-AGAT-TACATAGCAAAGACAGGCCAGTAACATA----------TTACAATCT---ATA---C-----GTTTT---G-AATA-GTT-TAAGTAACAC-ACAGGTA---GTAGT-ATA---AGTA--AT-ATA--GATAAGAAA
gi|18 : caatttatttttcaaaataaatatgcctttggACAA-----TAT-TCT-AAAT-CATTTGGCAAAAACAGTACAATAAAATA----------TTACAATCA---ACA---C-----CGTTT---ATAATT-ATTGTAA
gi|19 : ttcgattcagtgcacttccaatttattggtaagttttctgcaaacataATGTAACACACA-AAAATGCACACT-----GC--CTC------GCGA--GCATG------TAC-------TCCCTTTTTTCTACGTT-----T--TT-AA-----------GCAAA-ACA-ACG---A--AATATGA-A---AA-T---AA----GGTATTAATAAGATAGTTA
gi|2 : TT---G-AATT-GTT-TAAGTATCAT-A---GTATATATATTTATA---TATA--AC-ATA--TTTGA--AACAGTAAAAA-AAATATAACTCACA-AGAATGCACACT-----GC--CAC------GCGA--GCATA------TAC-------TCACTTTT-TCTACGTT-----T--TT-AA-----------GC-AG-A-T-A-G---A--AATATG--A---AA-T---TA----GGTATTAATCAGATGGTTACGAACCTTAAA-TGCTTCATATATAAATTT---AGAAGTATTAACAAGTAGTTTT-C-GTCTTTTCGTAG--ATAATAAAATAACACATTTATTAGACA-TAGGCCATGCCACCC--GGACTCTA--TACGA
gi|2 : CGTAG--------ATAATAAAATAAC--ACATTTATTAGACATAGGCCA-TGCCACCCGGACTCTATACGATATTATTATTTGTATACATTTGGCAAATTCTATTCTGTCTTTCGACACCAGTATA-TCTTCCGtattattatttgtatacatttggcaaattctattctgtctttcgacaccagtatatcttccggattcaaccgcaagattatgtgaacttaatttattgtatcatagttttatttaaagatcggtgctaaatgaatttct
gi|20 : ttgaattgtttaagtatcatagtatatatatttatatataacatatttgaaacagtaaaaaaaatataactcacaagaatgcacactgccacgcgagcatatactcactttttctacgtttttaagcagatagaaatatgaaattaggtattaatcagatggttacgaaccttaaatgcttcatatataaatttagaagtattaacaagtagttttcgtcttttCACATTTTGC-ACG-T-----T--CTGAA-----------GTAAA-T-A-A-----------ATG--A---AG-T---GA----GGTATTGATCAGATTGTTACGAACGCTATA-CGCTTCATATATAAATTT---Agattcaaccgcaagattatgtgaacttaatttattgtatcatagttttatttaaagatcggtgctaaatgaatttct
gi|21 : gca---GTATATATAAC-ATA---GATA--AC-ATA--GATGAGAAACAGT-AAAA-AAATATAACTCACA-AAAATGCATAC
gi|22 : ttcaaaatgtatatgttgtggtTGTAACACACA-AAAATGCACACT-----GC--CGC------CCAA--GCATG------TTC-------TTGCGTTTTTCTACGTT-----T--TT-AA-----------GCAAA-ACA-ACG---A--AA-ATG--A---AA-T---TA----
gi|3 : atGAAGCAGTGAAAA-AA-TGTATCTGAAT-AAAA-GCACACTCAAACACA-CGC------ACGGACGCATAATAAAATAC-------ACACTTGTTC--ACG-TCTTTTT--TT-AA-----------TCAAA-G-ATA-G---A--TATATG--T---AA-T---TT----TGTATTGATTAGATGGT----------ATA-TGCTTCTTACAGAAATAA---AGCACTATTGATCAATAGATTT-CAGTATT--CGTGG--ATAAAATATTAACAAACTTATT-GAAG-TGGACCAT---AATTGTGGAATATAATTATAACGTAA--------ATCGTAGCATCTCGGACAT--ATTAGTTAAA------TGGTATTGAGATTCAAAA-----ATTTAATTTGTACGCATATGGCAAATCCTATTCTATCTTCCGACACCAACATA-TCTT
gi|4 : TA----------TTACAATCA---ATG---C-----ATTTT---G-AATT-GTT-TAAGTATCAA-A---GTAAATAT-AT-AT------TA--A--ATA--TATGAGAAACAGTTAAAG-AAATGAACCTCACT-TAAATGCACACT-----TCAACGC------GCGA----ATA------TAC-------TAAATTTTT--CACGTT-----T--TT-AA-----------GCAAA-G-A-A-G---AC-AATATT--ATGTAA-TTTGTAGTTTGGTATGAATTAGATGGTAACTAACCTT-AA-TGTTAAATATATAAATTTACCAAAAAAAC--ACAAA-AGTTTT-C-CTTATTTCGTGGATATAATAT-TTAACAAATTCATTAGACG-TAGGCCATCCAATCCGTAAA-----------ACGTTA--------ATGTTAGAATCGCGGACAT--ATTAGTAATA----A-Ttttcgaatccaatgacaagtaataagtatacttgatata
gi|5 : tatgaataaatatatattatCCAT-TTACAAAAAAATAT-TTC-AAAT-CATATGGTATAGACATGACAAAAACATA----------GTAAAATCATGTGTA---T-----ATTTT---G-AACA-GTT-TAAGTAACATAA---GTA-ATATAGT-ATGCATGATATTACGATACTGATGAGAAACCGT---AA-AAGCTTATTTAATA-GAAAAGTACA---------------------------CATG--------------------TTTTTTCTCC---------------A-----------GTAAAGA-A-A-GGGAG--GATATG--T---AA-T---TA----GGTATAAAAAAGATGGTTACGCACCTTTAA-TGTTTCTTATATttattgtttttattttcatttaaacttaatct
gi|6 : gtacttcaaaaatgtgttatgtaaaacacataaaattgcaacaacactcttgtatgaaaaagtcaacttttttcaacaaacatatgtctttgaCATATTACGA-----TAT-TTTTAAAT-CATATGGCAAAGACAGGACAATAATATT----------GTACAATAA---ATA---C-----ATTTT---G-AACTAGTT---------------------TATAAC-ACA---GATA--AC----------------------AA-AAATGCA---CAC------TGC--------------CGC------GCGC--GCATA------TTC-------TCACTTATTTCCACGTT-----T--TT-AA-----------GCAAA-G-A-A-A---A--AGCATG--A---AA-T---TT----GATATCAATAAGATGGTTACGAACTTTAAA-TGCTTCATATTTATATTT---AAAAATATTAATAAGTAGTTTT-C------------G--ATAATATATTAACAAATGTATTA
gi|7 : attcaattcaattttattggcaaactatcaacaaaCCAT-TTACAT-----TAT-TTT-AAAT-CATATGACACAGACATAACATTGACATA----------GAAAAATCA---ATA---CATTTTATTTT---G-AATT-GTT-TAGGTATCAT-A---GTATACATA----------ATA--AC------GATAAGAAACCGT--AAA-ATATTTAACAGACA-TAAATGCAAACT-----agagtccgcattactacttgtacacatttggcaaa
gi|8 : gtactaacacttcgtctacgaaaaaagatgataatatgcactaacatttcgtctacgaaagaaatagatatttaatgcatttcg---A--AATATA--A---AA-----------------AATCAGATGGTTACAAACCATAAA-TGTTTC-----T---TTT---AGATAT-TTAGCAA-------------CTTT--------ATAATGGAGTTA-------ATTCGATGATAAAC--TGTCA--------ACAAATTTATGA-G-AC--------AT--TAATATCTTGGACAT--TTTACTCAAA----AATGGTATTCGGATTGAAGA-----TTATTACGTGTACACATTTGGCAAAATATATTCTTTCTTTCGACAGCAaacactatatctgttcaagaaatgaatatatgta
gi|9 : A-----------GCAAA-G-A-A-A---ATCAA-ATG--T---AA-T---GA----G-TATCATTCAGATGGTTACGAACCTAAAA-TGATTCCTATAGAATTCT---AGTAATATTAACAGGAATGTTT-C-GT-TTTTCGTGG--ATATCATGTTAACACATTTATTGGAAG-TTGGTCACGCCACTCGTAGACTACATTTACAATGTAAAACATTGTATCATAGGATCTAGGACAT--ATTAG--AAACAT-A-TTGTATTCGGATTCTACA-----Tcaagtaaattcaacctgaatagtaaaaaatattcactgata
Alignments
lowQualScore : 11111 111 11111 1 111111111 11111111111 11111111111 11111111 333333 11111 1
lowQualScore : 8 66666 5 5 5 1 1 000 44444 4 4 4 0 5 777 7 777 7777 55 3 55 1 3 1 1 2 0 000000000 888888 66 888888 9999999 3 33 33 5555 2 11111111111 55555555555 55 0 888888 2 444 5555 0 2 666 2 4 77 2 1 66 1 1 3 1 5 1 1 2 0 88888888 88 1 0 77 44 111111 1 1 66666 3 0
lowQualScore : . ..... . . . . . ... ..... . . . . . ... . ... .... .. . .. . . . . . . ......... ...... .. ...... ....... . .. .. .... . ........... ........... .. . ...... . ... .... . . ... . . .. . . .. . . . . . . . . . ........ .. . . .. .. ...... . . ..... . .
lowQualScore : 0 77777 7 7 7 3 3 000 33333 4 4 4 5 0 888 4 000 7777 00 6 00 6 6 8 3 5 6 000000000 222222 88 222222 3333333 4 77 77 7777 7 99999999999 88888888888 66 6 222222 4 111 0000 8 7 444 0 4 33 9 8 11 0 0 4 4 0 9 8 0 4 11111111 33 0 3 99 77 666666 0 0 77777 2 0
consensus : CCAT-TTACAA-----TAT-TTT-AAAT-CATATGGCAAAGACATGACAATAACATATTACAATCA---ATAC-----ATTTTG-AATT-GTT-TAAGTATCAT-A---GTATATATAAC-ATA---GATA--AC-ATA--GATGAGAAACAGTAAAAA-AAATGTAACTCACA-AAAATGCACACT-----GC--CGC------GCGA--GCATG------TAC-------TCACTTTTTTCTA--CG--T----T-TTTAA-----------GCAAA-A-A-A-G---A--AATATG--A---AA-T---TA----GGTATTAATCAGATGGTTACGAACCTTAAA-TGCTTCATATATAAATTT---AGAAATATTAACAAGTAGTTTT-C-GTCTTTTCGTGG--ATAATANATTNACAAATTTATTAGACG-TAGGCCATGCCACCCGTGGAATATATTTACGACGTAA--------ATCGTAGNATCTCGGACAT--ATTAGTCAAA----A-TGGTATTCGGATTCNANA-----TTATTATTTGTACGCATTTGGCAAATTCTATTCTGTCTTTCGACACCAGTATA-TCTTCCG
Reference ( family-599 ) : CCAT-TTACAA-----TAT-TTT-AAAT-CATATGGCAAAGACATGACAATAACATATTACAATCA---ATAC-----ATTTTG-AATT-GTT-TAAGTATCAT-A---GTATATATAAC-ATA---GATA--AC-ATA--GATGAGAAACAGTAAAAA-AAATGTAACTCACA-AAAATGCACACT-----GC--CGC------GCGA--GCATG------TAC-------TCACTTTTTTCTA--CG--T----T-TTTAA-----------GCAAA-A-A-A-G---A--AATATG--A---AA-T---TA----GGTATTAATCAGATGGTTACGAACCTTAAA-TGCTTCATATATAAATTT---AGAAATATTAACAAGTAGTTTT-C-GTCTTTTCGTGG--ATAATANATTNACAAATTTATTAGACG-TAGGCCATGCCACCCGTGGAATATATTTACGACGTAA--------ATCGTAGNATCTCGGACAT--ATTAGTCAAA----A-TGGTATTCGGATTCNANA-----TTATTATTTGTACGCATTTGGCAAATTCTATTCTGTCTTTCGACACCAGTATA-TCTTCCG
gi|1 : CCAT-TTACAA-----TATCTTT-AAAT-CATATGGCAAAGACATGACAATTACATATTACAATCA---ATAC-----ATTTTG-AATT-ATT-TAAGTATCAT-A---GTATATATAAC-ATA---GATA--AC-AAA--GATGAG-AACAGTAAAAACAAATGTAACTAAAA-AAAA-GCACATT-----AC--CGC------GCGAT-AAATG------TAC-------TCACTTTTTTCTA--CG-------T-TTTAA-----------GCAAA-A-A-ACG---A--AATATG--A---AA-T---AA----GGTATTAATCAGATGGTTACGAACCTTAAA-AGCTTCATATATAAGTTT---GGAAATATTAACAAGTAGTTTT-C-ATCTTTTATTGG--ATAATAAATTTACAAATTTATTAGACG-TAGGCCATGTCACCCGTGAAATATATTTACGACGTAA--------CTCGTGGAATCTTGGACAT--ATTAGTCAAA----A-TGGTATTCAGACTCTATA-----TTATTGTTTGTATACGTTTGGCAAATTCTATTCTGTCTTTCGACACCTGTATA-TCTTCCG
gi|10 : GTAACACACA-AAAATGCACACT-----GC--CGC------GCGA--GTATG------TAT-------TCACTTTTTTCTA--CG--T----T-TTTAA-----------GCAAA-ACA-ACG---A--AATATG--A---AAAT---TA----GGTATTAATCAGATGGTTA---ACCTAAAAATGCTTCATATATAAATTT---AGAAATATTAATAAGTAGTTGT-C-GTCCTTTCGTGG--ATAATAAATTTACAAATATATTAGACG-TAGGCCATGCGTTCCGTGGAATATATTTACGACGTAA--------
gi|11 : CACTCGTGGGATATATTTACAACGAAA--------ATCATAGTATACCAGACAT--AAAAGTAAAAC---A-TGGTATTCTGATTTAACT-----TAATCATTTGAACGTATTTGGCAAATTCTGTTTTGTCTTCCAGCACCAGT-TATTCTTCCg
gi|12 : CTCATA-AAAGTGCCCACT-----GC--CAC------GCGA--GCATG------TAC-------TCATTTTTTTCTA--AG--T----T-TTTGA-----------GCAAAGA-A-A-G---A--AATATG--A---AA-T---TA----GATATTAATTAGCTGGTTACGAACCTTAAG-TGCTTCATATATAAATTT---AGAAATATTAACAAGTAGTTTTCC-GTCTTTTCGTGG--ATAATAAATTCACAAATTCA-------------CATGCCACCCGTGGAATATATTTAagatttaatcacaacaactgaacgtttttcataatatattaatatatcgacatattttatgtgatcgataattaattttt
gi|13 : tTA--AT-ACA--GATGAGAATCAGTGAAAA-AAATGTAACTCACA-TAAATGTACACT-----GC--CGC------GCGG--GTATA------AAC-------TCACTTTTT--CA--CG--T----G-TTTAA-----------GTAAAGA-A-A-G---A--AATATG--A---AA-T---TA----GGTATTAATCAGATGGCTACAAACC-TAAA-GGCTTCATTTATAAATTT---AGAAATA--ACCAAGt
gi|14 : aagAT-TTA-AGATATATATGGCAAAGGCATGGCAATAACATAattgcatttgattttcatccaaaatttatt
gi|14 : atttaattcaattctattcaattttatcagcaagcatatgtcactggcaACATAACACGCACACT-----TA--CAC------GC------ATA------TAC-------TT-CCTTTTTCCG--CG--T----TGTTTGA-----------G-----A-A-A-G---A--AATGT-------AA-T---AA----GGTAATATCCCGATGGTTACGAACTTTAAA-TGCTATATATATAAacacgcacacttacacgcatatacttcctttttccgcgttgtttgagaaagaaatgtaataaggtaatatcccgatggttacgaactttaaatgctatatatataa
gi|15 : atttaattcaattctattcaattttatcagcaagcatatgtcactggcaatttaagatatatatggcaaaggcatggcaataTA---AGTA--AA-ATA--AATGAGAACCAGTAAAAT-A--TGTATCTTATA-TAATCGCACACG-----GG--CACAAAAACGCAC--ACATA------TTCCCCCTTTTCACTTTTTTCTAGGCGAAT----G-ATTAATCCTCCCGTGTGCTAT-A-A-A-A---A--AATGTG--T---AA-G---TA----TGTATTAATGAGATGGATACGAACATTAAA-TGCTTAATATA
gi|16 : ttTTG-AATT-GTT-TAAGTATCAT-A---GTATATATAAC-ATA---GATA--AC-ATA--GATGACAAACAGTAAAAA-AAATGTAACACACA-AAAATGCACACT-----GC--GGC------GCGA--GCATG------TAC-------TCACTTTTTTCTA--CG--T----T-TTTAA-----------GCAAA-ACA-ACG---A--AAAAGGAAA---AA-T---TA----GGTATT----AGATGGTTACGAACCTTAAA-TGCT
gi|17 : CCAT-TTCAAA-----TAT-TTT-AGAT-TACATAGCAAAGACAGGCCAGTAACATATTACAATCT---ATAC-----GTTTTG-AATA-GTT-TAAGTAACAC-ACAGGTA---GTAGT-ATA---AGTA--AT-ATA--GATAAGAAA
gi|18 : caatttatttttcaaaataaatatgcctttggACAA-----TAT-TCT-AAAT-CATTTGGCAAAAACAGTACAATAAAATATTACAATCA---ACAC-----CGTTTATAATT-ATTGTAA
gi|19 : ttcgattcagtgcacttccaatttattggtaagttttctgcaaacataATGTAACACACA-AAAATGCACACT-----GC--CTC------GCGA--GCATG------TAC-------TCCCTTTTTTCTA--CG--T----T-TTTAA-----------GCAAA-ACA-ACG---A--AATATGA-A---AA-T---AA----GGTATTAATAAGATAGTTA
gi|2 : TTG-AATT-GTT-TAAGTATCAT-A---GTATATATATTTATA---TATA--AC-ATA--TTTGA--AACAGTAAAAA-AAATATAACTCACA-AGAATGCACACT-----GC--CAC------GCGA--GCATA------TAC-------TCACTTTTT-CTA--CG--T----T-TTTAA-----------GCAGA-T-A---G---A--AATATG--A---AA-T---TA----GGTATTAATCAGATGGTTACGAACCTTAAA-TGCTTCATATATAAATTT---AGAAGTATTAACAAGTAGTTTT-C-GTCTTTTCGTAG--ATAATAAAATAACACATTTATTAGACA-TAGGCCATGCCACCC--GGACTCTA--TACGA
gi|2 : CGTAG--------ATAATAAAATAAC--ACATTTATTAGACATAGGCCA-TGCCACCCGGACTCTATACGATATTATTATTTGTATACATTTGGCAAATTCTATTCTGTCTTTCGACACCAGTATA-TCTTCCGtattattatttgtatacatttggcaaattctattctgtctttcgacaccagtatatcttccggattcaaccgcaagattatgtgaacttaatttattgtatcatagttttatttaaagatcggtgctaaatgaatttct
gi|20 : ttgaattgtttaagtatcatagtatatatatttatatataacatatttgaaacagtaaaaaaaatataactcacaagaatgcacactgccacgcgagcatatactcactttttctacgtttttaagcagatagaaatatgaaattaggtattaatcagatggttacgaaccttaaatgcttcatatataaatttagaagtattaacaagtagttttcgtcttttCACATTTTGC-A--CG--T----T-CTGAA-----------GTAAA-T-A-A-----------ATG--A---AG-T---GA----GGTATTGATCAGATTGTTACGAACGCTATA-CGCTTCATATATAAATTT---Agattcaaccgcaagattatgtgaacttaatttattgtatcatagttttatttaaagatcggtgctaaatgaatttct
gi|21 : gca---GTATATATAAC-ATA---GATA--AC-ATA--GATGAGAAACAGT-AAAA-AAATATAACTCACA-AAAATGCATAC
gi|22 : ttcaaaatgtatatgttgtggtTGTAACACACA-AAAATGCACACT-----GC--CGC------CCAA--GCATG------TTC-------TTGCGTTTTTCTA--CG--T----T-TTTAA-----------GCAAA-ACA-ACG---A--AA-ATG--A---AA-T---TA----
gi|3 : atGAAGCAGTGAAAA-AA-TGTATCTGAAT-AAAA-GCACACTCAAACACA-CGC------ACGGACGCATAATAAAATAC-------ACACTTGTTC--A--CG--TCTTTT-TTTAA-----------TCAAA-G-ATA-G---A--TATATG--T---AA-T---TT----TGTATTGATTAGATGGT----------ATA-TGCTTCTTACAGAAATAA---AGCACTATTGATCAATAGATTT-CAGTATT--CGTGG--ATAAAATATTAACAAACTTATT-GAAG-TGGACCAT---AATTGTGGAATATAATTATAACGTAA--------ATCGTAGCATCTCGGACAT--ATTAGTTAAA------TGGTATTGAGATTCAAAA-----ATTTAATTTGTACGCATATGGCAAATCCTATTCTATCTTCCGACACCAACATA-TCTT
gi|4 : TATTACAATCA---ATGC-----ATTTTG-AATT-GTT-TAAGTATCAA-A---GTAAATAT-AT-AT------TA--A--ATA--TATGAGAAACAGTTAAAG-AAATGAACCTCACT-TAAATGCACACT-----TCAACGC------GCGA----ATA------TAC-------TAAATTTTT--CA--CG--T----T-TTTAA-----------GCAAA-G-A-A-G---AC-AATATT--ATGTAA-TTTGTAGTTTGGTATGAATTAGATGGTAACTAACCTT-AA-TGTTAAATATATAAATTTACCAAAAAAAC--ACAAA-AGTTTT-C-CTTATTTCGTGGATATAATAT-TTAACAAATTCATTAGACG-TAGGCCATCCAATCCGTAAA-----------ACGTTA--------ATGTTAGAATCGCGGACAT--ATTAGTAATA----A-Ttttcgaatccaatgacaagtaataagtatacttgatata
gi|5 : tatgaataaatatatattatCCAT-TTACAAAAAAATAT-TTC-AAAT-CATATGGTATAGACATGACAAAAACATAGTAAAATCATGTGTAT-----ATTTTG-AACA-GTT-TAAGTAACATAA---GTA-ATATAGT-ATGCATGATATTACGATACTGATGAGAAACCGT---AA-AAGCTTATTTAATA-GAAAAGTACA---------------------------CATG--------------------TTTTTTCTC--C--------------A-----------GTAAAGA-A-A-GGGAG--GATATG--T---AA-T---TA----GGTATAAAAAAGATGGTTACGCACCTTTAA-TGTTTCTTATATttattgtttttattttcatttaaacttaatct
gi|6 : gtacttcaaaaatgtgttatgtaaaacacataaaattgcaacaacactcttgtatgaaaaagtcaacttttttcaacaaacatatgtctttgaCATATTACGA-----TAT-TTTTAAAT-CATATGGCAAAGACAGGACAATAATATTGTACAATAA---ATAC-----ATTTTG-AACTAGTT---------------------TATAAC-ACA---GATA--AC----------------------AA-AAATGCA---CAC------TGC--------------CGC------GCGC--GCATA------TTC-------TCACTTATTTCCA--CG--T----T-TTTAA-----------GCAAA-G-A-A-A---A--AGCATG--A---AA-T---TT----GATATCAATAAGATGGTTACGAACTTTAAA-TGCTTCATATTTATATTT---AAAAATATTAATAAGTAGTTTT-C------------G--ATAATATATTAACAAATGTATTA
gi|7 : attcaattcaattttattggcaaactatcaacaaaCCAT-TTACAT-----TAT-TTT-AAAT-CATATGACACAGACATAACATTGACATAGAAAAATCA---ATACATTTTATTTTG-AATT-GTT-TAGGTATCAT-A---GTATACATA----------ATA--AC------GATAAGAAACCGT--AAA-ATATTTAACAGACA-TAAATGCAAACT-----agagtccgcattactacttgtacacatttggcaaa
gi|8 : gtactaacacttcgtctacgaaaaaagatgataatatgcactaacatttcgtctacgaaagaaatagatatttaatgcatttcg---A--AATATA--A---AA-----------------AATCAGATGGTTACAAACCATAAA-TGTTTC-----T---TTT---AGATAT-TTAGCAA-------------CTTT--------ATAATGGAGTTA-------ATTCGATGATAAAC--TGTCA--------ACAAATTTATGA-G-AC--------AT--TAATATCTTGGACAT--TTTACTCAAA----AATGGTATTCGGATTGAAGA-----TTATTACGTGTACACATTTGGCAAAATATATTCTTTCTTTCGACAGCAaacactatatctgttcaagaaatgaatatatgta
gi|9 : A-----------GCAAA-G-A-A-A---ATCAA-ATG--T---AA-T---GA----G-TATCATTCAGATGGTTACGAACCTAAAA-TGATTCCTATAGAATTCT---AGTAATATTAACAGGAATGTTT-C-GT-TTTTCGTGG--ATATCATGTTAACACATTTATTGGAAG-TTGGTCACGCCACTCGTAGACTACATTTACAATGTAAAACATTGTATCATAGGATCTAGGACAT--ATTAG--AAACAT-A-TTGTATTCGGATTCTACA-----Tcaagtaaattcaacctgaatagtaaaaaatattcactgata
Alignments
lowQualScore : 11111 111 11111 1 111111111 11111111111 11111111111 11111111 333333 11111 1
lowQualScore : 8 66666 5 5 5 1 1 000 44444 4 4 4 0 5 777 7 777 7777 55 3 55 1 3 1 1 2 0 000000000 888888 66 888888 9999999 3 33 33 5555 2 11111111111 55555555555 55 0 888888 2 444 5555 0 2 666 2 4 77 2 1 66 1 1 3 1 5 1 1 2 0 88888888 88 1 0 77 44 111111 1 1 66666 3 0
lowQualScore : . ..... . . . . . ... ..... . . . . . ... . ... .... .. . .. . . . . . . ......... ...... .. ...... ....... . .. .. .... . ........... ........... .. . ...... . ... .... . . ... . . .. . . .. . . . . . . . . . ........ .. . . .. .. ...... . . ..... . .
lowQualScore : 0 77777 7 7 7 3 3 000 33333 4 4 4 5 0 888 4 000 7777 00 6 00 6 6 8 3 5 6 000000000 222222 88 222222 3333333 4 77 77 7777 7 99999999999 88888888888 66 6 222222 4 111 0000 8 7 444 0 4 33 9 8 11 0 0 4 4 0 9 8 0 4 11111111 33 0 3 99 77 666666 0 0 77777 2 0
consensus : CCAT-TTACAA-----TAT-TTT-AAAT-CATATGGCAAAGACATGACAATAACATATTACAATCA---ATAC-----ATTTTG-AATT-GTT-TAAGTATCAT-A---GTATATATAAC-ATA---GATA--AC-ATA--GATGAGAAACAGTAAAAA-AAATGTAACTCACA-AAAATGCACACT-----GC--CGC------GCGA--GCATG------TAC-------TCACTTTTTTCTA--CG--T----T-TTTAA-----------GCAAA-A-A-A-G---A--AATATG--A---AA-T---TA----GGTATTAATCAGATGGTTACGAACCTTAAA-TGCTTCATATATAAATTT---AGAAATATTAACAAGTAGTTTT-C-GTCTTTTCGTGG--ATAATANATTNACAAATTTATTAGACG-TAGGCCATGCCACCCGTGGAATATATTTACGACGTAA--------ATCGTAGNATCTCGGACAT--ATTAGTCAAA----A-TGGTATTCGGATTCNANA-----TTATTATTTGTACGCATTTGGCAAATTCTATTCTGTCTTTCGACACCAGTATA-TCTTCCG
Reference ( family-599 ) : CCAT-TTACAA-----TAT-TTT-AAAT-CATATGGCAAAGACATGACAATAACATATTACAATCA---ATAC-----ATTTTG-AATT-GTT-TAAGTATCAT-A---GTATATATAAC-ATA---GATA--AC-ATA--GATGAGAAACAGTAAAAA-AAATGTAACTCACA-AAAATGCACACT-----GC--CGC------GCGA--GCATG------TAC-------TCACTTTTTTCTA--CG--T----T-TTTAA-----------GCAAA-A-A-A-G---A--AATATG--A---AA-T---TA----GGTATTAATCAGATGGTTACGAACCTTAAA-TGCTTCATATATAAATTT---AGAAATATTAACAAGTAGTTTT-C-GTCTTTTCGTGG--ATAATANATTNACAAATTTATTAGACG-TAGGCCATGCCACCCGTGGAATATATTTACGACGTAA--------ATCGTAGNATCTCGGACAT--ATTAGTCAAA----A-TGGTATTCGGATTCNANA-----TTATTATTTGTACGCATTTGGCAAATTCTATTCTGTCTTTCGACACCAGTATA-TCTTCCG
gi|1 : CCAT-TTACAA-----TATCTTT-AAAT-CATATGGCAAAGACATGACAATTACATATTACAATCA---ATAC-----ATTTTG-AATT-ATT-TAAGTATCAT-A---GTATATATAAC-ATA---GATA--AC-AAA--GATGAG-AACAGTAAAAACAAATGTAACTAAAA-AAAA-GCACATT-----AC--CGC------GCGAT-AAATG------TAC-------TCACTTTTTTCTA--CG-------T-TTTAA-----------GCAAA-A-A-ACG---A--AATATG--A---AA-T---AA----GGTATTAATCAGATGGTTACGAACCTTAAA-AGCTTCATATATAAGTTT---GGAAATATTAACAAGTAGTTTT-C-ATCTTTTATTGG--ATAATAAATTTACAAATTTATTAGACG-TAGGCCATGTCACCCGTGAAATATATTTACGACGTAA--------CTCGTGGAATCTTGGACAT--ATTAGTCAAA----A-TGGTATTCAGACTCTATA-----TTATTGTTTGTATACGTTTGGCAAATTCTATTCTGTCTTTCGACACCTGTATA-TCTTCCG
gi|10 : GTAACACACA-AAAATGCACACT-----GC--CGC------GCGA--GTATG------TAT-------TCACTTTTTTCTA--CG--T----T-TTTAA-----------GCAAA-ACA-ACG---A--AATATG--A---AAAT---TA----GGTATTAATCAGATGGTTA---ACCTAAAAATGCTTCATATATAAATTT---AGAAATATTAATAAGTAGTTGT-C-GTCCTTTCGTGG--ATAATAAATTTACAAATATATTAGACG-TAGGCCATGCGTTCCGTGGAATATATTTACGACGTAA--------
gi|11 : CACTCGTGGGATATATTTACAACGAAA--------ATCATAGTATACCAGACAT--AAAAGTAAAAC---A-TGGTATTCTGATTTAACT-----TAATCATTTGAACGTATTTGGCAAATTCTGTTTTGTCTTCCAGCACCAGT-TATTCTTCCg
gi|12 : CTCATA-AAAGTGCCCACT-----GC--CAC------GCGA--GCATG------TAC-------TCATTTTTTTCTA--AG--T----T-TTTGA-----------GCAAAGA-A-A-G---A--AATATG--A---AA-T---TA----GATATTAATTAGCTGGTTACGAACCTTAAG-TGCTTCATATATAAATTT---AGAAATATTAACAAGTAGTTTTCC-GTCTTTTCGTGG--ATAATAAATTCACAAATTCA-------------CATGCCACCCGTGGAATATATTTAagatttaatcacaacaactgaacgtttttcataatatattaatatatcgacatattttatgtgatcgataattaattttt
gi|13 : tTA--AT-ACA--GATGAGAATCAGTGAAAA-AAATGTAACTCACA-TAAATGTACACT-----GC--CGC------GCGG--GTATA------AAC-------TCACTTTTT--CA--CG--T----G-TTTAA-----------GTAAAGA-A-A-G---A--AATATG--A---AA-T---TA----GGTATTAATCAGATGGCTACAAACC-TAAA-GGCTTCATTTATAAATTT---AGAAATA--ACCAAGt
gi|14 : aagAT-TTA-AGATATATATGGCAAAGGCATGGCAATAACATAattgcatttgattttcatccaaaatttatt
gi|14 : atttaattcaattctattcaattttatcagcaagcatatgtcactggcaACATAACACGCACACT-----TA--CAC------GC------ATA------TAC-------TT-CCTTTTTCCG--CG--T----TGTTTGA-----------G-----A-A-A-G---A--AATGT-------AA-T---AA----GGTAATATCCCGATGGTTACGAACTTTAAA-TGCTATATATATAAacacgcacacttacacgcatatacttcctttttccgcgttgtttgagaaagaaatgtaataaggtaatatcccgatggttacgaactttaaatgctatatatataa
gi|15 : atttaattcaattctattcaattttatcagcaagcatatgtcactggcaatttaagatatatatggcaaaggcatggcaataTA---AGTA--AA-ATA--AATGAGAACCAGTAAAAT-A--TGTATCTTATA-TAATCGCACACG-----GG--CACAAAAACGCAC--ACATA------TTCCCCCTTTTCACTTTTTTCTAGGCGAAT----G-ATTAATCCTCCCGTGTGCTAT-A-A-A-A---A--AATGTG--T---AA-G---TA----TGTATTAATGAGATGGATACGAACATTAAA-TGCTTAATATA
gi|16 : ttTTG-AATT-GTT-TAAGTATCAT-A---GTATATATAAC-ATA---GATA--AC-ATA--GATGACAAACAGTAAAAA-AAATGTAACACACA-AAAATGCACACT-----GC--GGC------GCGA--GCATG------TAC-------TCACTTTTTTCTA--CG--T----T-TTTAA-----------GCAAA-ACA-ACG---A--AAAAGGAAA---AA-T---TA----GGTATT----AGATGGTTACGAACCTTAAA-TGCT
gi|17 : CCAT-TTCAAA-----TAT-TTT-AGAT-TACATAGCAAAGACAGGCCAGTAACATATTACAATCT---ATAC-----GTTTTG-AATA-GTT-TAAGTAACAC-ACAGGTA---GTAGT-ATA---AGTA--AT-ATA--GATAAGAAA
gi|18 : caatttatttttcaaaataaatatgcctttggACAA-----TAT-TCT-AAAT-CATTTGGCAAAAACAGTACAATAAAATATTACAATCA---ACAC-----CGTTTATAATT-ATTGTAA
gi|19 : ttcgattcagtgcacttccaatttattggtaagttttctgcaaacataATGTAACACACA-AAAATGCACACT-----GC--CTC------GCGA--GCATG------TAC-------TCCCTTTTTTCTA--CG--T----T-TTTAA-----------GCAAA-ACA-ACG---A--AATATGA-A---AA-T---AA----GGTATTAATAAGATAGTTA
gi|2 : TTG-AATT-GTT-TAAGTATCAT-A---GTATATATATTTATA---TATA--AC-ATA--TTTGA--AACAGTAAAAA-AAATATAACTCACA-AGAATGCACACT-----GC--CAC------GCGA--GCATA------TAC-------TCACTTTTT-CTA--CG--T----T-TTTAA-----------GCAGA-T-A---G---A--AATATG--A---AA-T---TA----GGTATTAATCAGATGGTTACGAACCTTAAA-TGCTTCATATATAAATTT---AGAAGTATTAACAAGTAGTTTT-C-GTCTTTTCGTAG--ATAATAAAATAACACATTTATTAGACA-TAGGCCATGCCACCC--GGACTCTA--TACGA
gi|2 : CGTAG--------ATAATAAAATAAC--ACATTTATTAGACATAGGCCA-TGCCACCCGGACTCTATACGATATTATTATTTGTATACATTTGGCAAATTCTATTCTGTCTTTCGACACCAGTATA-TCTTCCGtattattatttgtatacatttggcaaattctattctgtctttcgacaccagtatatcttccggattcaaccgcaagattatgtgaacttaatttattgtatcatagttttatttaaagatcggtgctaaatgaatttct
gi|20 : ttgaattgtttaagtatcatagtatatatatttatatataacatatttgaaacagtaaaaaaaatataactcacaagaatgcacactgccacgcgagcatatactcactttttctacgtttttaagcagatagaaatatgaaattaggtattaatcagatggttacgaaccttaaatgcttcatatataaatttagaagtattaacaagtagttttcgtcttttCACATTTTGC-A--CG--T----T-CTGAA-----------GTAAA-T-A-A-----------ATG--A---AG-T---GA----GGTATTGATCAGATTGTTACGAACGCTATA-CGCTTCATATATAAATTT---Agattcaaccgcaagattatgtgaacttaatttattgtatcatagttttatttaaagatcggtgctaaatgaatttct
gi|21 : gca---GTATATATAAC-ATA---GATA--AC-ATA--GATGAGAAACAGT-AAAA-AAATATAACTCACA-AAAATGCATAC
gi|22 : ttcaaaatgtatatgttgtggtTGTAACACACA-AAAATGCACACT-----GC--CGC------CCAA--GCATG------TTC-------TTGCGTTTTTCTA--CG--T----T-TTTAA-----------GCAAA-ACA-ACG---A--AA-ATG--A---AA-T---TA----
gi|3 : atGAAGCAGTGAAAA-AA-TGTATCTGAAT-AAAA-GCACACTCAAACACA-CGC------ACGGACGCATAATAAAATAC-------ACACTTGTTC--A--CG--TCTTTT-TTTAA-----------TCAAA-G-ATA-G---A--TATATG--T---AA-T---TT----TGTATTGATTAGATGGT----------ATA-TGCTTCTTACAGAAATAA---AGCACTATTGATCAATAGATTT-CAGTATT--CGTGG--ATAAAATATTAACAAACTTATT-GAAG-TGGACCAT---AATTGTGGAATATAATTATAACGTAA--------ATCGTAGCATCTCGGACAT--ATTAGTTAAA------TGGTATTGAGATTCAAAA-----ATTTAATTTGTACGCATATGGCAAATCCTATTCTATCTTCCGACACCAACATA-TCTT
gi|4 : TATTACAATCA---ATGC-----ATTTTG-AATT-GTT-TAAGTATCAA-A---GTAAATAT-AT-AT------TA--A--ATA--TATGAGAAACAGTTAAAG-AAATGAACCTCACT-TAAATGCACACT-----TCAACGC------GCGA----ATA------TAC-------TAAATTTTT--CA--CG--T----T-TTTAA-----------GCAAA-G-A-A-G---AC-AATATT--ATGTAA-TTTGTAGTTTGGTATGAATTAGATGGTAACTAACCTT-AA-TGTTAAATATATAAATTTACCAAAAAAAC--ACAAA-AGTTTT-C-CTTATTTCGTGGATATAATAT-TTAACAAATTCATTAGACG-TAGGCCATCCAATCCGTAAA-----------ACGTTA--------ATGTTAGAATCGCGGACAT--ATTAGTAATA----A-Ttttcgaatccaatgacaagtaataagtatacttgatata
gi|5 : tatgaataaatatatattatCCAT-TTACAAAAAAATAT-TTC-AAAT-CATATGGTATAGACATGACAAAAACATAGTAAAATCATGTGTAT-----ATTTTG-AACA-GTT-TAAGTAACATAA---GTA-ATATAGT-ATGCATGATATTACGATACTGATGAGAAACCGT---AA-AAGCTTATTTAATA-GAAAAGTACA---------------------------CATG--------------------TTTTTTCTC--C--------------A-----------GTAAAGA-A-A-GGGAG--GATATG--T---AA-T---TA----GGTATAAAAAAGATGGTTACGCACCTTTAA-TGTTTCTTATATttattgtttttattttcatttaaacttaatct
gi|6 : gtacttcaaaaatgtgttatgtaaaacacataaaattgcaacaacactcttgtatgaaaaagtcaacttttttcaacaaacatatgtctttgaCATATTACGA-----TAT-TTTTAAAT-CATATGGCAAAGACAGGACAATAATATTGTACAATAA---ATAC-----ATTTTG-AACTAGTT---------------------TATAAC-ACA---GATA--AC----------------------AA-AAATGCA---CAC------TGC--------------CGC------GCGC--GCATA------TTC-------TCACTTATTTCCA--CG--T----T-TTTAA-----------GCAAA-G-A-A-A---A--AGCATG--A---AA-T---TT----GATATCAATAAGATGGTTACGAACTTTAAA-TGCTTCATATTTATATTT---AAAAATATTAATAAGTAGTTTT-C------------G--ATAATATATTAACAAATGTATTA
gi|7 : attcaattcaattttattggcaaactatcaacaaaCCAT-TTACAT-----TAT-TTT-AAAT-CATATGACACAGACATAACATTGACATAGAAAAATCA---ATACATTTTATTTTG-AATT-GTT-TAGGTATCAT-A---GTATACATA----------ATA--AC------GATAAGAAACCGT--AAA-ATATTTAACAGACA-TAAATGCAAACT-----agagtccgcattactacttgtacacatttggcaaa
gi|8 : gtactaacacttcgtctacgaaaaaagatgataatatgcactaacatttcgtctacgaaagaaatagatatttaatgcatttcg---A--AATATA--A---AA-----------------AATCAGATGGTTACAAACCATAAA-TGTTTC-----T---TTT---AGATAT-TTAGCAA-------------CTTT--------ATAATGGAGTTA-------ATTCGATGATAAAC--TGTCA--------ACAAATTTATGA-G-AC--------AT--TAATATCTTGGACAT--TTTACTCAAA----AATGGTATTCGGATTGAAGA-----TTATTACGTGTACACATTTGGCAAAATATATTCTTTCTTTCGACAGCAaacactatatctgttcaagaaatgaatatatgta
gi|9 : A-----------GCAAA-G-A-A-A---ATCAA-ATG--T---AA-T---GA----G-TATCATTCAGATGGTTACGAACCTAAAA-TGATTCCTATAGAATTCT---AGTAATATTAACAGGAATGTTT-C-GT-TTTTCGTGG--ATATCATGTTAACACATTTATTGGAAG-TTGGTCACGCCACTCGTAGACTACATTTACAATGTAAAACATTGTATCATAGGATCTAGGACAT--ATTAG--AAACAT-A-TTGTATTCGGATTCTACA-----Tcaagtaaattcaacctgaatagtaaaaaatattcactgata
blockSeqs : A AAAAA . T A T T TGT ATTTT T A G A CAG T TTT CATG TT G CT G . A A T CAAACACA AAAAAC AC ATAAAA CCCCTTT T GG AA CTTT G TCCTCCCGTGT GAAAGGGA TC ATGT A TTG GTTT A ACC T C AG C T AT A T A C A T A T AACATTGT CA T TT TA GGCCA A C CGATA A T
blockSeqs : . . . . . G T . . . . . . . T AC A . . . A . A T . TCAA . . . . T . . . . . ACAACG C AAA . . . . . T . G C T . A C A C . C A T . AA A . AC CATA T T . A .
blockSeqs : . . . . . G T . . . . . . . T GT G . . . A . T T . GC . . . . T . . . . . ACAACG . AA . . . . . T . G C T . A A A A . C A T . CG C . TT CA A A . . .
blockSeqs : . . . . . T G . . . . . . . A AC A . . . A . A T . GC . . . . T . . . . . ACAACG . A . . . . . T . G A T . T A A C . C C A . GT A . TA AA A G .
blockSeqs : . . . . G G . . . . . . . T AT T . . . G . A A . GC . . . . T . . . . . ACAACG . A . . . . . T . C T T . T A C T . A A T . CA T . TC A T C .
blockSeqs : . . . T G . . . . . . . . GT G . . . T . A A . TA . . . . T . . . . . GAAAG . A . . . . . A . G C . . T A G A . T A T . . G . . .
blockSeqs : . . . . . . AC G . . . . . A T . GG . . . . G . . . . . GAAAG . T . . . . . . . . . . . G T . . . C C . .
blockSeqs : . . . . . . . . . . . . A T . GC . . . . T . . . . . GATAG . A . . . . . . . . . . . T A . . . .
blockSeqs : . . . . . . T A . GC . . . . C . . . . . AAAG . A . . . . .
blockSeqs : . . . . . C T . GC . . . . T . . . . . AAAA . A . . . . .
blockSeqs : T T . GC . . . . T . . . . . GAAG . T . . . .
blockSeqs : A T . . . . . . . . . . . . GAAA . T . . . .
blockSeqs : . A . . . . . . . . . . . . GAAA . A . . . .
blockSeqs : . . . . . . . . TAG . A . . . .
blockSeqs : . . TAA . T . . .
blockSeqs : . . . . .
blockSeqCons : ** GAAAG****** CA****
originalCons : CCAT-TTACAA-----TAT-TTT-AAAT-CATATGGCAAAGACATGACAATAACATATTACAATCA---ATAC-----ATTTTG-AATT-GTT-TAAGTATCAT-A---GTATATATAAC-ATA---GATA--AC-ATA--GATGAGAAACAGTAAAAA-AAATGTAACTCACA-AAAATGCACACT-----GC--CGC------GCGA--GCATG------TAC-------TCACTTTTTTCTA--CG--T----T-TTTAA-----------GCAAA-A-A-A-G---A--AATATG--A---AA-T---TA----GGTATTAATCAGATGGTTACGAACCTTAAA-TGCTTCATATATAAATTT---AGAAATATTAACAAGTAGTTTT-C-GTCTTTTCGTGG--ATAATANATTNACAAATTTATTAGACG-TAGGCCATGCCACCCGTGGAATATATTTACGACGTAA--------ATCGTAGNATCTCGGACAT--ATTAGTCAAA----A-TGGTATTCGGATTCNANA-----TTATTATTTGTACGCATTTGGCAAATTCTATTCTGTCTTTCGACACCAGTATA-TCTTCCG
finalCons : CCAT-TTACAA-----TAT-TTT-AAAT-CATATGGCAAAGACATGACAATAACATATTACAATCA---ATAC-----ATTTTG-AATT-GTT-TAAGTATCAT-A---GTATATATAAC-ATA---GATA--AC-ATA--GATGAGAAACAGTAAAAA-AAATGTAACTCACA-AAAATGCACACT-----GC--CGC------GCGA--GCATG------TAC-------TCACTTTTTTCTA--CG--T----T-TTTAA-----------GCAAAGAAAG------A--AATATG--A---AA-T---TA----GGTATTAATCAGATGGTTACGAACCTTAAA-TGCTTCATATATAAATTT---AGAAATATTAACAAGTAGTTTT-C-GTCTTTTCGTGG--ATAATANATTNACAAATTTATTAGACG-TAGGCCATGCCACCCGTGGAATATATTTACGACGTAA--------ATCGTAGNATCTCGGACAT--ATTAGTCAAACA----TGGTATTCGGATTCNANA-----TTATTATTTGTACGCATTTGGCAAATTCTATTCTGTCTTTCGACACCAGTATA-TCTTCCG
Alignments
lowQualScore : 11111 111 11111 1 111111111 22222222222222222222222 11111111111 111 22222 11111 1
lowQualScore : 8 66666 5 5 5 1 1 000 44444 4 4 4 0 5 777 7 777 7777 55 3 55 2 1 3 1 1 2 0 000000000 6666 66 888888 0 3 3 5555 2 33 99999999999999999999999 99999 888888 2 444 5555 0 2 666 2 4 77 2 1 66 1 1 3 1 5 1 1 0 2 77777777777 222 1 66 66 6 11111 77 0 1 1 44444 0 3 0
lowQualScore : . ..... . . . . . ... ..... . . . . . ... . ... .... .. . .. . . . . . . . ......... .... .. ...... . . . .... . .. ....................... ..... ...... . ... .... . . ... . . .. . . .. . . . . . . . . . ........... ... . .. .. . ..... .. . . . ..... . . .
lowQualScore : 0 77777 7 7 7 3 3 000 33333 4 4 4 5 0 888 4 000 7777 00 6 00 5 6 6 8 3 5 6 000000000 1111 88 222222 1 4 1 7777 7 77 44444444444444444444444 11111 111111 4 111 0000 8 7 444 0 4 33 9 8 11 0 0 4 4 0 9 8 9 9 66666666666 999 0 99 99 5 66666 99 4 0 0 33333 7 2 0
consensus : CCAT-TTACAA-----TAT-TTT-AAAT-CATATGGCAAAGACATGACAATAACATATTACAATCA---ATAC-----ATTTTG-AATT-GTT-TAAGTATCAT-A---GTATATATAAC-ATA---GATA--AC-ATA--GATGAGAAACAGTAAAAA-AAATGTAACTCACA-AAAATGCACACT-----GC--CGCG----CGA--GCATG------TACTCACTTTTTTCTACGT----T-TTT--AAGCAAA------------------G----AAA-G---AAATATG--A---AA-T---TA----GGTATTAATCAGATGGTTACGAACCTTAAA-TGCTTCATATATAAATTT---AGAAATATTAACAAGTAGTTTT-C-GTCTTTTCGTGG--ATAATANATTNACAAATTTATTAGACG-TAGGCCATGCCACCCGTGGAATATATTTACGACGTA--A--------ATC-GTAGNATCTCGG--ACAT--ATTAGTCAAA---CATG--GTATTCGGATTCNACA-----TTATTATTTGTACGCATTTGGCAAATTCTATTCTGTCTTTCGACACCAGTATA-TCTTCCG
Reference ( family-599 ) : CCAT-TTACAA-----TAT-TTT-AAAT-CATATGGCAAAGACATGACAATAACATATTACAATCA---ATAC-----ATTTTG-AATT-GTT-TAAGTATCAT-A---GTATATATAAC-ATA---GATA--AC-ATA--GATGAGAAACAGTAAAAA-AAATGTAACTCACA-AAAATGCACACT-----GC--CGCG----CGA--GCATG------TACTCACTTTTTTCTACGT----T-TTT--AAGCAAA------------------G----AAA-G---AAATATG--A---AA-T---TA----GGTATTAATCAGATGGTTACGAACCTTAAA-TGCTTCATATATAAATTT---AGAAATATTAACAAGTAGTTTT-C-GTCTTTTCGTGG--ATAATANATTNACAAATTTATTAGACG-TAGGCCATGCCACCCGTGGAATATATTTACGACGTA--A--------ATC-GTAGNATCTCGG--ACAT--ATTAGTCAAA---CATG--GTATTCGGATTCNANA-----TTATTATTTGTACGCATTTGGCAAATTCTATTCTGTCTTTCGACACCAGTATA-TCTTCCG
gi|1 : CCAT-TTACAA-----TATCTTT-AAAT-CATATGGCAAAGACATGACAATTACATATTACAATCA---ATAC-----ATTTTG-AATT-ATT-TAAGTATCAT-A---GTATATATAAC-ATA---GATA--AC-AAA--GATGAGAA-CAGTAAAAACAAATGTAACTAAAA-AAAA-GCACATT-----AC--CGCG----CGAT-AAATG------TACTCACTTTTTTCTACG-----T-TTT--AAGCAAA------------------A----AAC-G---AAATATG--A---AA-T---AA----GGTATTAATCAGATGGTTACGAACCTTAAA-AGCTTCATATATAAGTTT---GGAAATATTAACAAGTAGTTTT-C-ATCTTTTATTGG--ATAATAAATTTACAAATTTATTAGACG-TAGGCCATGTCACCCGTGAAATATATTTACGACGTA--A--------CTC-GTGGAATCTTGG--ACAT--ATTAGTCAAA----ATG--GTATTCAGACTCTATA-----TTATTGTTTGTATACGTTTGGCAAATTCTATTCTGTCTTTCGACACCTGTATA-TCTTCCG
gi|10 : GTAACACACA-AAAATGCACACT-----GC--CGCG----CGA--GTATG------TATTCACTTTTTTCTACGT----T-TTT--AAGCAAA------------------A----CAACG---AAATATG--A---AAAT---TA----GGTATTAATCAGATGGTTA---ACCTAAAAATGCTTCATATATAAATTT---AGAAATATTAATAAGTAGTTGT-C-GTCCTTTCGTGG--ATAATAAATTTACAAATATATTAGACG-TAGGCCATGCGTTCCGTGGAATATATTTACGACGTA--A--------
gi|11 : CACTCGTGGGATATATTTACAACGAA--A--------ATC-ATAGTATACCAG--ACAT--AAAAGTAAAA---CATG--GTATTCTGATTTAACT-----TAATCATTTGAACGTATTTGGCAAATTCTGTTTTGTCTTCCAGCACCAGT-TATTCTTCCg
gi|12 : CTCATA-AAAGTGCCCACT-----GC--CACG----CGA--GCATG------TACTCATTTTTTTCTAAGT----T-TTT--GAGCAAA------------------G----AAA-G---AAATATG--A---AA-T---TA----GATATTAATTAGCTGGTTACGAACCTTAAG-TGCTTCATATATAAATTT---AGAAATATTAACAAGTAGTTTTCC-GTCTTTTCGTGG--ATAATAAATTCACAAATTCA-------------CATGCCACCCGTGGAATATATTTAagatttaatcacaacaactgaacgtttttcataatatattaatatatcgacatattttatgtgatcgataattaattttt
gi|13 : tTA--AT-ACA--GATGAGAATCAGTGAAAA-AAATGTAACTCACA-TAAATGTACACT-----GC--CGCG----CGG--GTATA------AACTCACTTTTT--CACGT----G-TTT--AAGTAAA------------------G----AAA-G---AAATATG--A---AA-T---TA----GGTATTAATCAGATGGCTACAAACC-TAAA-GGCTTCATTTATAAATTT---AGAAATA--ACCAAGt
gi|14 : aagAT-TTA-AGATATATATGGCAAAGGCATGGCAATAACATAattgcatttgattttcatccaaaatttatt
gi|14 : atttaattcaattctattcaattttatcagcaagcatatgtcactggcaACATAACACGCACACT-----TA--CACG----C------ATA------TACTT-CCTTTTTCCGCGT----TGTTT--GAG---------------------------AAA-G---AAATGT-------AA-T---AA----GGTAATATCCCGATGGTTACGAACTTTAAA-TGCTATATATATAAacacgcacacttacacgcatatacttcctttttccgcgttgtttgagaaagaaatgtaataaggtaatatcccgatggttacgaactttaaatgctatatatataa
gi|15 : atttaattcaattctattcaattttatcagcaagcatatgtcactggcaatttaagatatatatggcaaaggcatggcaataTA---AGTA--AA-ATA--AATGAGAACCAGTAAAAT-A--TGTATCTTATA-TAATCGCACACG-----GG--CACAAAAACGC--ACACA------TATTCCCCCTTTTC-ACTT----T-TTTCTAGGCGAATGATTAATCCTCCCGTGTGCTATAAA-A---AAATGTG--T---AA-G---TA----TGTATTAATGAGATGGATACGAACATTAAA-TGCTTAATATA
gi|16 : ttTTG-AATT-GTT-TAAGTATCAT-A---GTATATATAAC-ATA---GATA--AC-ATA--GATGACAAACAGTAAAAA-AAATGTAACACACA-AAAATGCACACT-----GC--GGCG----CGA--GCATG------TACTCACTTTTTTCTACGT----T-TTT--AAGCAAA------------------AC---AAC-G---AAAAAGGAAA---AA-T---TA----GGTATT----AGATGGTTACGAACCTTAAA-TGCT
gi|17 : CCAT-TTCAAA-----TAT-TTT-AGAT-TACATAGCAAAGACAGGCCAGTAACATATTACAATCT---ATAC-----GTTTTG-AATA-GTT-TAAGTAACAC-ACAGGTA---GTAGT-ATA---AGTA--AT-ATA--GATAAGAAA
gi|18 : caatttatttttcaaaataaatatgcctttggACAA-----TAT-TCT-AAAT-CATTTGGCAAAAACAGTACAATAAAATATTACAATCA---ACAC-----CGTTTATAATT-ATTGTAA
gi|19 : ttcgattcagtgcacttccaatttattggtaagttttctgcaaacataATGTAACACACA-AAAATGCACACT-----GC--CTCG----CGA--GCATG------TACTCCCTTTTTTCTACGT----T-TTT--AAGCAAA------------------AC---AAC-G---AAATATGA-A---AA-T---AA----GGTATTAATAAGATAGTTA
gi|2 : TTG-AATT-GTT-TAAGTATCAT-A---GTATATATATTTATA---TATA--AC-ATA--TTTGA--AACAGTAAAAA-AAATATAACTCACA-AGAATGCACACT-----GC--CACG----CGA--GCATA------TACTCACTTTTT-CTACGT----T-TTT--AAGCA--------------------G----ATA-G---AAATATG--A---AA-T---TA----GGTATTAATCAGATGGTTACGAACCTTAAA-TGCTTCATATATAAATTT---AGAAGTATTAACAAGTAGTTTT-C-GTCTTTTCGTAG--ATAATAAAATAACACATTTATTAGACA-TAGGCCATGCCACCC--GGACTCTA--TACGA
gi|2 : CGTA--G--------ATA-ATAAAATAAC----ACATTTATTAGACATAGGCCATG--CCACCCGGACTCTATACGATATTATTATTTGTATACATTTGGCAAATTCTATTCTGTCTTTCGACACCAGTATA-TCTTCCGtattattatttgtatacatttggcaaattctattctgtctttcgacaccagtatatcttccggattcaaccgcaagattatgtgaacttaatttattgtatcatagttttatttaaagatcggtgctaaatgaatttct
gi|20 : ttgaattgtttaagtatcatagtatatatatttatatataacatatttgaaacagtaaaaaaaatataactcacaagaatgcacactgccacgcgagcatatactcactttttctacgtttttaagcagatagaaatatgaaattaggtattaatcagatggttacgaaccttaaatgcttcatatataaatttagaagtattaacaagtagttttcgtcttttCACATTTTGC-ACGT----T-CTG--AAGTAAA------------------T----AAA----------TG--A---AG-T---GA----GGTATTGATCAGATTGTTACGAACGCTATA-CGCTTCATATATAAATTT---Agattcaaccgcaagattatgtgaacttaatttattgtatcatagttttatttaaagatcggtgctaaatgaatttct
gi|21 : gca---GTATATATAAC-ATA---GATA--AC-ATA--GATGAGAAACAGT-AAAA-AAATATAACTCACA-AAAATGCATAC
gi|22 : ttcaaaatgtatatgttgtggtTGTAACACACA-AAAATGCACACT-----GC--CGCC----CAA--GCATG------TTCTTGCGTTTTTCTACGT----T-TTT--AAGCAAA------------------AC---AAC-G---AAA-ATG--A---AA-T---TA----
gi|3 : atGAAGCAGTGAAAA-AA-TGTATCTGAAT-AAAA-GCACACTCAAACACA-CGCA----CGGACGCATAATAAAATACACACTTGTTC--ACGTCTTTT-TTT--AATCAAA------------------G----ATA-G---ATATATG--T---AA-T---TT----TGTATTGATTAGATGGT----------ATA-TGCTTCTTACAGAAATAA---AGCACTATTGATCAATAGATTT-CAGTATT--CGTGG--ATAAAATATTAACAAACTTATT-GAAG-TGGACCAT---AATTGTGGAATATAATTATAACGTA--A--------ATC-GTAGCATCTCGG--ACAT--ATTAGTTAAA-----TG--GTATTGAGATTCAAAA-----ATTTAATTTGTACGCATATGGCAAATCCTATTCTATCTTCCGACACCAACATA-TCTT
gi|4 : TATTACAATCA---ATGC-----ATTTTG-AATT-GTT-TAAGTATCAA-A---GTAAATAT-AT-AT------TA--A--ATA--TATGAGAAACAGTTAAAG-AAATGAACCTCACT-TAAATGCACACT-----TCAACGCG----CGA----ATA------TACTAAATTTTT--CACGT----T-TTT--AAGCAAA------------------G----AAG-A---CAATATT--ATGTAA-TTTGTAGTTTGGTATGAATTAGATGGTAACTAACCTT-AA-TGTTAAATATATAAATTTACCAAAAAAAC--ACAAA-AGTTTT-C-CTTATTTCGTGGATATAATAT-TTAACAAATTCATTAGACG-TAGGCCATCCAATCCGTAAA-----------ACGTT--A--------ATG-TTAGAATCGCGG--ACAT--ATTAGTtttcgaatccaatgacaagtaataagtatacttgatata
gi|5 : tatgaataaatatatattatCCAT-TTACAAAAAAATAT-TTC-AAAT-CATATGGTATAGACATGACAAAAACATAGTAAAATCATGTGTAT-----ATTTTG-AACA-GTT-TAAGTAACATAA---GTA-ATATAGT-ATGCATGATATTACGATACTGATGAGAAACCGT---AA-AAGCTTATTTAATA-GAAAAGTACA-------------------------CATG-------------TTTTTTCTCC--------------AGTAAA------------------G----AAA-GGGAGGATATG--T---AA-T---TA----GGTATAAAAAAGATGGTTACGCACCTTTAA-TGTTTCTTATATaataatttattgtttttattttcatttaaacttaatct
gi|6 : gtacttcaaaaatgtgttatgtaaaacacataaaattgcaacaacactcttgtatgaaaaagtcaacttttttcaacaaacatatgtctttgaCATATTACGA-----TAT-TTTTAAAT-CATATGGCAAAGACAGGACAATAATATTGTACAATAA---ATAC-----ATTTTG-AACTAGTT---------------------TATAAC-ACA---GATA--AC----------------------AA-AAATGCA---CAC------TGC--------------CGCG----CGC--GCATA------TTCTCACTTATTTCCACGT----T-TTT--AAGCAAA------------------G----AAA-----AAGCATG--A---AA-T---TT----GATATCAATAAGATGGTTACGAACTTTAAA-TGCTTCATATTTATATTT---AAAAATATTAATAAGTAGTTTT-C------------G--ATAATATATTAACAAATGTATTA
gi|6 : attcaattcaattttattggcaaactatcaacaaaTATATTTAAAA-ATATTA--------ATAAGTAGT-TTTCGATAATAT--ATTAA-CAAA---T-----GTATTAAGAGTCCGCA-----TTACTACTTGTACACATTTGGCAAAagagtccgcattactacttgtacacatttggcaaa
gi|7 : attcaattcaattttattggcaaactatcaacaaacatattacgatatttttaaatcatatggcaaagacaggacaataatattgtacaataaatacattttgaactagtttataacacagataacaaaaatgcacactgccgcgcgcgcatattctcacttatttccacgtttttaagcaaagaaaaagcatgaaatttgatatcaataagatggttacgaactttaaatgcttcatattCCAT-TTACAT-----TAT-TTT-AAAT-CATATGACACAGACATAACATTGACATAGAAAAATCA---ATACATTTTATTTTG-AATT-GTT-TAGGTATCAT-A---GTATACATA----------ATA--AC------GATAAGAAACCGT--AAA-ATATTTAACAGACA-TAAATGCAAACT-----
gi|8 : gtactaacacttcgtctacgaaaaaagatgataatatgcactaacatttcgtctacgaaagaaatagatatttaatgcatttcg---AAATATA--A---AA-----------------AATCAGATGGTTACAAACCATAAA-TGTTTC-----T---TTT---AGATAT-TTAGCAA-------------CTTT--------ATAATGGAGTTA-------ATTCGATGATAAAC--TGTCA--------ACAAATTTATGA-G-A--C--------AT---TAATATCTTGG--ACAT--TTTACTCAAA---AATG--GTATTCGGATTGAAGA-----TTATTACGTGTACACATTTGGCAAAATATATTCTTTCTTTCGACAGCAaacactatatctgttcaagaaatgaatatatgta
gi|9 : AGCAAA------------------G----AAA-ATC-AAATGT-------AA-T---GA----G-TATCATTCAGATGGTTACGAACCTAAAA-TGATTCCTATAGAATTCT---AGTAATATTAACAGGAATGTTT-C-GT-TTTTCGTGG--ATATCATGTTAACACATTTATTGGAAG-TTGGTCACGCCACTCGTAGACTACATTTACAATGTA--AAACATTGTATC-ATAGGATCTAGG--ACAT--ATTAG--AAA---CATATTGTATTCGGATTCTACA-----Tcaagtaaattcaacctgaatagtaaaaaatattcactgata