lowQualScore : 1111111111111 33333333333333333333333 1111111 22222222222222222222222222222222222222222222222222222222222222222 11111111111111 1111111111111111111111 22222222222222222222222222222222222222222222222222222
lowQualScore : 666666 1 22 2222222222222 1 222 22 44444444444444444444444 1 1 2222 0000000 1 22 777 1 6666 11 5555 22222 777 1 1 2 1111 3333 11 1 11 2222222 2 00000000000000000000000000000000000000000000000000000000000000000 3333 1 1 1 4 33333333333333 1 1 3333333333333333333333 111 1 1111 77777777 1111 11 1 1 666666666666 1111 4444444444444 222 33333333 333333 11111111111111111111111111111111111111111111111111111 1 1
lowQualScore : 000000 6 5 11 5555555555555 6 5 777 6 6 6 6 11 66666666666666666666666 5 5 7777 6666666 5 6 6 11 6 6 000 7 1111 22 5555 44444 6 6 6 000 0 0 0 3333 7777 4 3 3 88 5 4 88 2222222 0 4 6 11111111111111111111111111111111111111111111111111111111111111111 1111 5 6 6 7 5 6 6 0 11111111111111 7 6 7 9999999999999999999999 888 77 0 1 99 66 55 77 9999 33 5 0 0000 33333333 3 6 6 1 0 8 8 8888 99 0 11 0 6 1 8 0 0 1 6 5 6 6 0 6 111111111111 1 4444 6 4 3333333333333 7 222 0 00000000 888888 6 22222222222222222222222222222222222222222222222222222 3 5 6 0 3 1
lowQualScore : ...... . . .. ............. . . ... . . . . .. ....................... . . .... ....... . . . .. . . ... . .... .. .... ..... . . . ... . . . .... .... . . . .. . . .. ....... . . . ................................................................. .... . . . . . . . . .............. . . . ...................... ... .. . . .. .. .. .. .... .. . . .... ........ . . . . . . . .... .. . .. . . . . . . . . . . . . . ............ . .... . . ............. . ... . ........ ...... . ..................................................... . . . . . .
lowQualScore : 000000 0 0 00 0000000000000 0 0 000 0 0 0 0 00 00000000000000000000000 0 0 0000 0000000 0 0 0 00 0 0 000 0 0000 00 0000 00000 0 0 0 000 5 5 0 5555 0000 0 0 0 55 0 0 55 0000000 0 0 0 00000000000000000000000000000000000000000000000000000000000000000 0000 0 0 0 0 0 0 0 0 00000000000000 0 0 0 0000000000000000000000 000 44 7 0 22 99 99 99 8888 66 0 8 8888 77777777 5 7 7 4 8 0 0 8888 22 8 00 8 0 0 0 8 8 8 0 0 0 7 7 7 777777777777 0 3333 7 7 3333333333333 3 777 7 55555555 333333 0 00000000000000000000000000000000000000000000000000000 3 0 0 7 2 4
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATCCAGTGTTTCATCGGAACACAACCTCCCGAGGTCATTAGGACTGTGAGAGTCAAACACCCAATAACAGCCACCCAGTTCAATAATTGCTACAGTGCAGCAGTCAACAGTAAGAAAGCAAATCATTGTCACGGAATGCACTGCATCATCCATGCACTGGAATGGACTGGACCATCAAATATACTTCCCAGGCCATAATTTGATATATTTGAAAGTTTAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTTATGAGTATCATTTAAAAAA--CATCTTATTGCAAAAATCTGATTCTTTACTGCTATTCAGANNNNNNNAAAAATCTGGTTCTTNACNGCTATTCANAGCGTACNTTAANTATNTNCCATTTGGAGCTNGTCGAACTATTTTAGNTNGTGCACGCCNTGACAACG--TAGAGTCGATAATATNAAATAATGTT----AATCAAACATTATTAATTTTATTCAGAAGTCAAAATTGATATTTTTGGAATTGATTAGCTCTGTAATCAGTAGTTACATTATGTTTAGTATTATATCAGTCAGTCACTTAT--TGGTCATTAGAAGGGATAGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATAATGA-GTCAATCGGGTCAATACACTTAATGGAAATAGTCCTGGGACCGTATTCATAAAGCTT--CTTAGATT--TTCGCTAAGAAAATAT--CTTAGCTCAGT---AATATTTTCTTAGCTAAGATGAAAACAANTTTTTAACTTA----CGAGTGGTATTCATAAAACCACTAAG-ACAAATCTTAGCTAAGA-AAACGTATAAGAAAATAATAATTCTT-AGA-TCAAATATTT---CATCTTAAA--AAAA--ATCTTAACTCGGTAACTAAGGAAGTCTGGGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGTTTGGAAAATACCTTCTATACTATAATCTACTTTAAATGAGTATTGAAATGTCAATGTGGTATGTGAGCTTGTGTGTAGTGT----------G-TTTGTGTATATATACCTATGTGTGTGTA-GGTATNTNGCTGCG-ATTGTGTGC-TGTGTAT-ATAAACTATGTATATGTTAGTCACTCAACTCGTTTTGTGTTTATGTGTTTTAGATATAT------ATATGTTACTACAACAGTGTACTTCGATGAGAAACTGTGTATAGTCTTCTTCCCCTTCTTCTCTTTTTTACTTCTTATTCTTCTCCTTCTTTTTTCAGTATTATACTA-AACTGGAAATGTAAAATCAAATACAGGGGAACGCGATACTCGTGAACTTTATTTAGAAAAACAATGAATAGATGAATTACTTTAAAAATGTCCCTATCAAAATAGTGTTATGATTATAAATGATATTGCCGCTGTTTTCTACCATAATATAAACCGCTGCG
Reference ( gi|1 ) : CATTGTTCCACTTTCAAGCATAACTTTTAAACATGTGACAGTGTGCTAGTCAATAATCC--TATATCATCAGAACACAACATCCAAAGGT-AT---GA-TCTCAAAGTCAAAGACGTGATAACAACTATCTAGTTTCATAATTGCTACA------------AC---------GCAAATCATTTTCAGGGAATTTAATGCATCATCCATGCACTGGAATGGAAT-----ATAAAATATATTTCCTATACCATAATTTAATATATCTGAAA---TAGTTGACCAAAAACTTTAGTTTGAATATTACTTCCAAACAGTTTATGTGTATCATTTAAAACAGTCATCTTATTGTGAAAATAAATTTCTTTGTTTTTGTTTAAACTAAATAAAAAA---GGTTCTTCACGGTT-TTCACAATGTACCTTTATTATTTACCATTTGGAACTTGTCAAACTATTTTAGATTG-GCA-GTCTTAACAGGGACCAGAAT-GATAATTGGAAATAA-GTTTCAGAATCAA-TATAA--AACTTCAT---GA--CCAAAATTGAAGTATTTGGAATTGATTAGCTCTTTAACCAATAGTAACAGTGTGTTTAATATTA-ATCAGTC--T--CTTATAAGAGTCTTTAAAAGGGATAGCCCAGTCTGTGATACATTTATTTAGACTATTACTCTGAATTGATAATTCAGATACATCGAGATACAAATTACATTTTTGCTATTAAAAAACCTACCTGTGAAAAAAATATCAGTGTGTAAGGATTTATGAAAAAGACAACTGAATAACAGCTGCAATATGACATACAAAAGTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAAGAGAAATAATTCAATTGATATTCAATGAAGACATAATGCCTTGTTGAAAGAGGGTCTAAACGAGGCTATGAAAATTTCACAAAATTATTCAAAGTGGTTACAAATTTGTGACAGACATGAAATTATAAACATTGTCTTTTGCCAATTTCAGTACATTTAAGTGATTTGTTTTTTCATCATTGAAGTAAGTATTTGGAACTTGCGCAAAACATATCATTGAATGATAAATGTAGCTAAAATATTTGCAATGGTTTGCATGGTAATGTGAGATGGTTTATACAGGCTGGACACTGTATTGTCATAGCATTAACAAATGGGTGAGCAGACATGCAGAAAAATGGCAATTTCATAGTAAAAAATTATTTAGATGGAGATTAAATGAAGGGGAAACATGGAAATTGAGTATATAAATTGGTGTCATTTTTTCCCTTTTCCAGAATTTAGACTGATTAAACAAAGGTTTGATAGACAATATTTCATATTCTGGCCAGATTCTTATCAAGTTATTCATCACCTTTAAGGTTCCAGTATTCTCTTGCAGAGAAATTCTATGTAAAACTATACTGTTATTTGTTTCCAAGTCAATGAACCAACAGTTATATTTATAAAATAAGATCAGGCTAAAACTTACTATAATTAGCCCCTAAAACCCATGTATCTGCTCTGGTAAACAGTGTGAAACCAATACAGATCTCTTTCATTTGGTGCAATTGGGATTGAGACAAATTTTACCAAATGATTATAACTTTATATTTTCACAAAGGCTCCAGTTTGGGAAACAGTGAGTTTCAATTGAAAAATATAAACAAAAGCTATAAATTTCACATAATCAATGACAGTTATATCTAAACTATCTAAACTGTCTCTAACAACTCCCAAATTATGTACAAATATTTAAAAAAATGACAATGACATCACAAAATGAAATTATGATGTCA------TCAATTCA---AATAAGAATAGTTCTGGGACCGTATTCATAAAGCTT--CTTAGATT--TTCGCTAAGAAAATAT--CTTAACTCAGT---AATATTTTCTTAGTTAACATGAAAACAAATTTTTAACTTATTAATAAGTGATATTCATAAAACCACTAAG-ACAAATCTTAGTTAAGA-AAACGTATAAGAAAATAATAATTCTT-AGA-TCAAATATTT---TATCTTAAA--AAAA--ATCTTAACTCGGTAACTAAGGAAGTCTGGGATT-TCCAAATCTTAAAATAGTATCGGAAGAGATAGTTTGGAAAATACCTTCTATGCTATAAGCTGCTTTAAATGAGTATTGAAATGTCAATGTGGTGTGTGAGCTTGTGTGTAGTGT----------G-TTTGTGTATATATACCTATATGTGTGTA-GGTATCTAGCTGTG-TTTGGGTGTTTGTGTAT-AAAAACTATGTACATGTTAGTCACTCAACTCGTTTTGTGTTTATGTG-TT-AG--ATAT------ATATGTTACTACAGCAGTGTACTTTGATGAGAAACTGTGTATAG-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTC--------GTATTATACTA-AACTGGAAATGTAAAATCAAATACAGTGAAACGCGATACTCGTGAACTTTATTTAGAAAAACAATGAATAGATGAATTACTTTAAAAATGTCCCTATCAAAATAGTGTTATGATTATAAATGATATTGCCGCTGTTTTCTACCATAATATAAACCGCTGCGG
gi|3 : ATAATCCAGTGTTTCATCGGAACACAACCTCCCGAGGTCATTAGGACTGTGAGAGTCAAACACCCAATAACAGCCACCCAGTTCAATAATTGCTACAGTGCAGCAGTCAACAGTAAGAAAGCAAATCATTGTCACGGAATGCACTGCATCATCCATGCACTGGAATGGACTGGACCATCAAATATACTTCCCAGGCCATAATTTGATATATTTGAAAGTTTAGTT
gi|3 : AGTTTATGAGTATCATTTAAAAAA--CATCTTATTGCAAAAATCTGATTCTTTACTGCTATTCAGAtatgagtatcatttaaaaaacatcttattgcaaaaatctgattctttactgctattcagagcgtatcttaaatatttaccatttggaactagtcaaactattttaggtaggcagtctagagagtcttagagggttaatttaaaactttatgactgtggtcctaaaacacatgagtggaattctatttattccacgaaagacatccaaccaattgtaaccaattgtaataatatcaaataatgttaatcaaacattattaattttattcagaagtcaaaattgatatttttggaattgattagctctgtaatcagtagttacattatgtttagtattatatcagtcagtcacttattggtcattagaagggatagccct
gi|3 : ataatccagtgtttcatcggaacacaacctcccgaggtcattaggactgtgagagtcaaacacccaataacagccacccagttcaataattgctacagtgcagcagtcaacagtaagaaagcaaatcattgtcacggaatgcactgcatcatccatgcactggaatggactggaccatcaaatatacttcccaggccataatttgatatatttgaaagtttAAAAATCTGATTCTTTACTGCTATTCAGAGCGTATCTTAAATATTTACCATTTGGAACTAGTCAAACTATTTTAGGTAG-GCA-GTCTgcgtatcttaaatatttaccatttggaactagtcaaactattttaggtaggcagtctagagagtcttagagggttaatttaaaactttatgactgtggtcctaaaacacatgagtggaattctatttattccacgaaagacatccaaccaattgtaaccaattgtaataatatcaaataatgttaatcaaacattattaattttattcagaagtcaaaattgatatttttggaattgattagctctgtaatcagtagttacattatgtttagtattatatcagtcagtcacttattggtcattagaagggatagccct
gi|9 : ataatccagtgtttcatcggaacacaacctcccgaggtcattaggactgtgagagtcaaacacccaataacagccacccagttcaataattgctacagtgcagcagtcaacagtaagaaagcaaatcattgtcacggaatgcactgcatcatccatgcactggaatggactggaccatcaaatatacttcccaggccataatttgatatatttgaaagtttagtttatgagtatcatttaaaaaacatcttattgcGTTTTTAATAGTT-TTTATAGCGTACA---ATTATGTCCCAT--GGAG-TTGTCG--CTATTTT-GTTTGTACACGCCATGACAACG--TAGAGTCGATAA---GAAATAA-GTagagagtcttagagggttaatttaaaactttatgactgtggtcctaaaacacatgagtggaattctatttattccacgaaagacatccaaccaattgtaaccaattgtaataatatcaaataatgttaatcaaacattattaattttattcagaagtcaaaattgatatttttggaattgattagctctgtaatcagtagttacattatgtttagtattatatcagtcagtcacttattggtcattagaagggatagccct
gi|3 : tttaactaT-AATAATATCAAATAATGTT----AATCAAACATTATTAATTTTATTCAGAAGTCAAAATTGATATTTTTGGAATTGATTAGCTCTGTAATCAGTAGTTACATTATGTTTAGTATTATATCAGTCAGTCACTTAT--TGGTCATTAGAAGGGATAGCCCaacaaagcgggctgtttaaaggctcaaatataaacttatttacaaaatgcggtaagttttagtgtattatatcaataagacctgagacc
gi|5 : ataatccagtgtttcatcggaacacaacctcccgaggtcattaggactgtgagagtcaaacacccaataacagccacccagttcaataattgctacagtgcagcagtcaacagtaagaaagcaaatcattgtcacggaatgcactgcatcatccatgcactggaatggactggaccatcaaatatacttcccaggccataatttgatatatttgaaagtttagtttatgagtatcatttaaaaaacatcttattgcaaaaatctgattctttactgctattcagagcgtatcttaaatatttaccatttggaactagtcaaactattttaggtaggcagtctagagagtcttagagggttaatttaaaactttatgactgtggtcctaaaacacatgagtggaattctatttattccacgaaagacatccaaccaattgtaaccaattgAAATAATGA-GTCAATCGGGTCAATACACTTAATGGAAAAAGACCAGGAGCCGTATTCCTATAGCTT--CTTAGAGT--TTCGCTTAGAAAATAT--CTTAGCTCAGT---AATATTTTCTTAGCTAAGATAAAAACAATTTTTTAACTTA------AGTGGTATTCATAAAACCAATAAG-ACAAATCTGAGTTAAGA-AAACGTTTAAGAAAATAATAATTCTG-AGA-CCAAATATCT---CATCTTTAA--AAAA--ATCTTAACTCGGTAAATAAGGAAGTCTGGTATT-TCCAAATCTCAAAACAGTATCAGAAGTGATAGTTTGGAAAATACATTCTATACTATAATCTACTTTAAATGAGTATTGAAATGTCAATGTGGTATGTGAGCGTGTGTGTA--GT----------G-TTTGTGTATATATACCTATGTGTGTGTA-GG-GTATAGATATGAATTGA-----TATATAT-ATAAATTATATATATATTAt
gi|6 : AATTGTTC--GGACCATGT------AGTTTAGTTTAAACC--TT-----AGACAATAC--CTTAACTCAAT---TATATTTTA--AGCTAAGATGAAAA--------TAATTTCCTAATAA-TCACATTCAGTGAACCACAAAA-AC--ATCGTAGCTAAAATAAA
gi|4 : aatagccagtTAATCTTGGTGCCGTATTCATAAAGCTT--CTTAGATT--TTCGCTAAGAAAATAT--CTTAACTCAGT---AATATTTTCTAAGCTAAGATGAAAACATTTTTTTAACTTA------AGTGGTATTCATAAAACCACTAAG-ACAAATCTTAGTTAAGA-AAACGTATAAGAAAATAATAATTCAT-AGA-TCAAATATTT---GATCTTAAA--A-AA--ATCTTAACTCGGTAACTAAGGAAGTCTGGGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGTTTGGAAAATACCTTCTATACTATAATCTACTTTAAATGAGTATTACAATGTCAATGTG--GTATGAGCTTGTGTGTAGTGTCACTCAACTCGTTTTGTGTTTATGTGTTTAGATATATATA-TATATGTTACTGCA-ACAGTGTACTT-TG-ATGAGAAACTGTGTATAttaaaaagtttaactagttaattatggatgtcggggattgtccattcttaaatggtatcggaaaagacagtttgtaaaatattgtttat
gi|3 : aaatgttaatttgtttaacaaaaattgttttacatgGTTTTAGGACCACAGTCATAAAG--T--TTTAAATTAACCCTCTAAGA
gi|11 : ataatccagtgtttcatcggaacacaacctcccgaggtcattaggactgtgagagtcaaacacccaataacagccacccagttcaataattgctacagtgcagcagtcaacagtaagaaagcaaatcattgtcacggaatgcactgcatcatccatgcactggaatggactggaccatcaaatatacttcccaggccataatttgatatatttgaaagtttagtttatgagtatcatttaaaaaacatcttattgcaaaaatctgattctttactgctattcagagcgtatcttaaatatttaccatttggaactagtcaaactattttaggtaggcagtctagagagCTAGGATTATATTCATAAAGCCT--CTTAGATT--GTTTCCAA----------TTTAGCTAACT---AA--------------ACGTAAAAACAAGC-----ACTCAAT--TGAGTTGTATTCATAAAACAACTGAGAACAAATCTGAGCT----------TATAAGAAAATTAAAATTGTTAAGAGTCAGG-ATTTAAGTATCTTCAA--acatgagtggaattctatttattccacgaaagacatccaaccaattgtaaccaattgtaataatatcaaataatgttaatcaaacattattaattttattcagaagtcaaaattgatatttttggaattgattagctctgtaatcagtagttacattatgtttagtattatatcagtcagtcacttattggtcattagaagggatagccct
gi|2 : CCATATTCATAAAGCTC--CTTAGATT--TTCGCTAAGAAAATAT--CTTAACTCAGT---AATATTTTCTTAGTCAAGATGAAAACAAATTTTTAACTTA------AGTGGTATTCATAAAACCACTAAG-ACAAATCTTAGTTAAGA-AAACGTATAAGAAAATAATAATTCTT-AGA-TCAAATATTT---CATCTTAAA--AAAA--ACCTTAACTCGGTAACTAAGGAAATCTGGGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGTTTTGAAAATACCTTCTATACTATAATCTACTTTAACTGAGTAATGAAATGTCAATGTGGTATGTGAGCTTGTGTGTAGTGT----------G-TTTGTGTATATATACCTATGTGTGTGTAGGGTATCTGGCTGTG-TTTGTGTGTATGTGTAT-GTAAACTATGTACATGTTAGTCACTCAACTCGTTTTGTGTTTATGTATTT-AGATATAT------ATATGTTACTACAACAGTGTACTTCGATGAGAAACTGTGTATAGTCTTCTTCCCCTTCTTCTCTTTTTTACTTCTTATTCTTCTCCTTCTTTTTTCAGTATTATACTACAACTGGAAATGTAAAATCAAACACAGGGGAACGCGATACTCGTGAACTTTATATAGAAAAACAATGAATAGAT
gi|2 : ATC--TTGACTAAGAAAATAT--T---ACTGAGTTAAGATATTTTCTTAGatatataaatatattagtgtatctaaatgtattcaaaagttttcgcagtgaattactttaaaaatgtccctattaaaatagtgaaatgattataaatgatattgccactgttttctgccataatataaaccgctgtg
gi|5 : ccatattcataaagctccttagattttcgATC--TTAGCTAAGAAAATATTACTGAGCTAAG-----ATATTTTCTAAGgaaaacaaatttttaacttaagtggtattcataaaaccactaagacaaatcttagttaagaaaacgtataagaaaataataattcttagatcaaatatttcatcttaaaaaaaaccttaactcggtaactaaggaaatctgggatttccaaatcttaaaatagtatcggaagtgatagttttgaaaataccttctatactataatctactttaactgagtaatgaaatgtcaatgtggtatgtgagcttgtgtgtagtgtgtttgtgtatatatacctatgtgtgtgtagggtatctggctgtgtttgtgtgtatgtgtatgtaaactatgtacatgttagtcactcaactcgttttgtgtttatgtatttagatatatatatgttactacaacagtgtacttcgatgagaaactgtgtatagtcttcttccccttcttctcttttttacttcttattcttctccttcttttttcagtattatactacaactggaaatgtaaaatcaaacacaggggaacgcgatactcgtgaactttatatagaaaaacaatgaatagatatatataaatatattagtgtatctaaatgtattcaaaagttttcgcagtgaattactttaaaaatgtccctattaaaatagtgaaatgattataaatgatattgccactgttttctgccataatataaaccgctgtg
gi|14 : aaataatgagtcaatcgggtcaatacacttaatggaaaaagaccaggagccgtattcctatagcttcttagagtttcgTCAAT---GATATTTTCTTAGCTAAGATGAAAACAAGTTCTTAACT------CGAGTGGCATTTATAAAACCACTGAG-AAATATTTT-GCTAAGA-TTGAGTTTAAGAAAATAATCA---TT-AAG-TAAAATAaaaaacaattttttaacttaagtggtattcataaaaccaataagacaaatctgagttaagaaaacgtttaagaaaataataattctgagaccaaatatctcatctttaaaaaaatcttaactcggtaaataaggaagtctggtatttccaaatctcaaaacagtatcagaagtgatagtttggaaaatacattctatactataatctactttaaatgagtattgaaatgtcaatgtggtatgtgagcgtgtgtgtagtgtttgtgtatatatacctatgtgtgtgtagggtatagatatgaattgatatatatataaattatatatatatta
gi|15 : TATTT---CATAATAAA--AAAATCATCT--ACTCTGTATCTA--GAAGTGAGTGATT-TCGAAATCTTCAAATAGTATTTGAGGTGATAATTTGGAAACTGCCTTCTGTcatattaatgtt
gi|6 : TAAATTAAAA--AGTTTAACTAGTTAATTATGGATGTCGGGGATTGTCCAT-TCTTAAA-TGGTATCGGAAAAGACAGTTTGTAAAATATTGTTTATaaa
gi|4 : aatagccagtaattgttcggaccatgtagtttagtttaaaccttagacaataccttaactcaattatattttaagctaagatgaaaataatttcctaataatcacattcagtgaaccacaaaaacatcgtagctaaaaGTCACTCAACTCGTTTTGTGTTTATGTG-TTTAG--ATATATATATATATGTTACTGCAACAGTGTACTTTGATGAGAAACTGTGTATA
gi|13 : aaatgttaatttgtttaacaaaaattgttttacatgtaatcttggtgccgtattcataaagcttcttagattttcgctaagaaaatatcttaactcagtaatattttctaagctaagatgaaaacatttttttaacttaagtggtattcataaaaccactaagacaaatcttagttaagaaaacgtataagaaaataataattcatagatcaaatatttgatcttaaaaaaatcttaactcggtaactaaggaagtctgggatttccaaatcttaaaatagtatcggaagtgatagtttggaaaataccttctatactataatctactttaaatgagtattacaatgtcaatgtggtatgagcttgtgtgtagt------ATTTGTTACTACAACATTATATTTTGGTGAGAAGCTATATGTA
gi|7 : TACTA-AACTGGAAATGTAAAATCAAATACAGGGGAACGCAATACTCGTGAACTTTATTTAGAAAAACAATGAaagttttcttcttctttcttcttctttctttttattcttctcctactttttcttgaataacaataaacattgaacaaaaattgaaccggggg
gi|8 : ACTA-AACTGGAAATGTAAAATCAAATACAGGGGAACGCAATACTCGTGAACTTTATTTAGAAAAACAATGAATATATnnnnnnnnnnnnnnnnnnnnnnnnnaataattagtctatcttaatgtattcaaaagttttcgcagtgaattactttaaaaatgtccctatcaaaatagtgttatgattataaatgatattgccgctgttttctaccataatataaaccgctgcg
gi|10 : ACTTTATTTAGAAAAACAATG-ATAGATatatatatatatataaataattagtctatcttaatgtattcaaaagttttcgcagtgaattactttaaaaatgtccctatcaaaatagtgttatgattataaatgatattgccgctgttttctaccataatataaaccgctgcg
gi|2 : gtTGAATTACTTTAAAAATGTCCCTATTAAAATAGTGAAATGATTATAAATGATATTGCCACTGTTTTCTGCCATAATATAAACCGCTGTGatatataaataattaatgtatctaaatgtattcaaaagtattcgcagtgaattactttaaaaatgtcactatcaaaatagtgttatgattataaatgatattgccgcagttttctaccataatataaacctc
gi|8 : ccatattcataaagctccttagattttcgctaagaaaatatcttaactcagtaatattttcttagtcaagatgaaaacaaatttttaacttaagtggtattcataaaaccactaagacaaatcttagttaagaaaacgtataagaaaataataattcttagatcaaatatttcatcttaaaaaaaaccttaactcggtaactaaggaaatctgggatttccaaatcttaaaatagtatcggaagtgatagttttgaaaataccttctatactataatctactttaactgagtaatgaaatgtcaatgtggtatgtgagcttgtgtgtagtgtgtttgtgtatatatacctatgtgtgtgtagggtatctggctgtgtttgtgtgtatgtgtatgtaaactatgtacatgttagtcactcaactcgttttgtgtttatgtatttagatatatatatgttactacaacagtgtacttcgatgagaaactgtgtatagtcttcttccccttcttctcttttttacttcttattcttctccttcttttttcagtattatactacaactggaaatgtaaaatcaaacacaggggaacgcgatactcgtgaactttatatagaaaaacaatgaatagatatatataaatatattagtgtatctaaatgtattcaaaagttttcgcagTGAATTACTTTAAAAATGTCCCTATCAAAATAGTGTTATGATTATAAATGATATTGCCGCTGTTTTCTACCATAATATAAACCGCTGCG
gi|7 : actaaactggaaatgtaaaatcaaatacaggggaacgcaatactcgtgaactttatttagaaaaacaatgaatatatatatatatatatataaataattagtctatcttaatgtattcaaaagttttcgcagTGAATTACTTTAAAAATGTCCCTATCAAAATAGTGTTATGATTATAAATGATATTGCCGCTGTTTTCTACCATAATATAAACCGCTGCG
gi|10 : tactaaactggaaatgtaaaatcaaatacaggggaacgcaatactcgtgaactttatttagaaaaacaatgannnnnnnnnnnnnnnnnnnnnnnnnaataattagtctatcttaatgtattcaaaagttttcgcagTGAATTACTTTAAAAATGTCACTATCAAAATAGTGTTATGATTATAAATGATATTGCCGCAGTTTTCTACCATAATATAAACC
gi|12 : gtactttatttagaaaaacaatgatagatatatataaataattaatgtatctaaatgtattcaaaagtattcgcagTGAATTACCTTAAAAATGTCCTTATTAATATAGTGTAATGGTTATAAATAATATTTCTGCTGTTTTCTACCATAATATAAAACGGTGCGtc
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): ATAGTCCGCAGTTATTTCATGGAGTTGTCGCTATTTTGTCATGGCAACGTGTCGTTAAGAAATAAGTTATAAAGTTGTTTGTTTTAAAGGATCAA
Alignments
lowQualScore : 2222222222222222222222222222222222222222222222222222
lowQualScore : 11 1 222 1 66666666666666666666666 22222 222 33333333333333333333333333333333333 2222222222222222222222222222222222222222222222222222 1 2 1 2 2 222222 22 1111 1 4444 1 11 222 11 1 22222 333 2 222222 222 44444444 111 555555555555 1 222 1 44 11 11 1 1 11111111 11
lowQualScore : 88 4 2 2 5 111 5 2 2 2 2 3 44444444444444444444444 2 2 2 2 2 55555 2 2 111 55555555555555555555555555555555555 4 7777777777777777777777777777777777777777777777777777 5 1 1 0 3 1 4 1 1 1 7 77 1 88 7 1 1 3 3 0 1 999999 22 7777 5 2222 5 4 88 111 88 4 4 2 4 3 5 77777 000 4 4 0 888888 4 111 0 0 0 33 5 1 99999999 5 5 6 6 000 77 99 3 6 3 666666666666 0 3 1 1 2 88888 444 0 3 0 3 33 88 0 88 7 0 0 88888888 8 11 0 0 0
lowQualScore : .. . . . . ... . . . . . . ....................... . . . . . ..... . . ... ................................... . .................................................... . . . . . . . . . . . .. . .. . . . . . . . ...... .. .... . .... . . .. ... .. . . . . . . ..... ... . . . ...... . ... . . . .. . . ........ . . . . ... .. .. . . . ............ . . . . . ..... ... . . . . .. .. . .. . . . ........ . .. . . .
lowQualScore : 00 0 5 5 0 000 0 5 5 5 5 0 55555555555555555555555 5 5 5 5 5 55555 5 5 000 00000000000000000000000000000000000 0 5555555555555555555555555555555555555555555555555555 5 0 0 7 7 0 0 0 0 0 3 33 0 00 3 0 0 7 3 7 0 333333 33 2222 5 5555 5 0 55 000 00 0 0 5 0 0 5 00000 555 0 0 0 555555 0 000 2 7 3 00 7 0 33333333 7 7 7 7 000 99 22 5 7 2 222222222222 0 2 0 0 0 22222 222 2 2 0 5 00 55 7 33 3 3 7 77777777 0 00 8 8 8
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATCCAGTGTNTCATCGGAACACAACNTCCCGAGGTCATTAGGACTNTNAGAGTCAAANACNCGATAACAGCCACCCAGTTCNATAATTGCTACAGTGCAGCAGTCAACAGTAAGAAAGCAAATCATTNTCANGGAATNCANTGCATCATCCATGCACTGGAATGGANTGGACCATNAAATATACTTCCCANGCCATAATTTGATATATCTGAAAGTTTAGTTGACCAAAAACTTTAGTTTGAATATTACTTCCAAACAGTTTATGNGTATCATTTAAAACAGTCATCTTATTGTGAANATNNATTTCTTTGTTNCTGTTTAAACTAAATAAAAAATCTGGTTCTTNACNGTT-TTCANAGCGTACCTTAATTATTTACCATTTGGAACTTGTCGAACTATTTTAGNTTG-GCA-GTCTTGACAG-CG--TAGAGT-GATAATTTGAAATAATGTTTCAGAATCAAACATNATTAACTTCATTCAGAAGCCAAAATTGANGTNTTTGGAATTGATTAGCTCTNTAACCAGTAGTNACANTGTGTTTAGTATTATATCAGTCAGTCACTTATAANGGTCNTTAGAAGGGATAGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATNATGATGTCAATCGGGTCAATNCACTTAATGGGAATAGTCCTGGGGCCGTATTCATAAAGCTTCTTAGATTTTCGCTAAGAAAATATCTTAACTCAGTAATATTTTCTTAGCTAAG-ATGAAAACAANTTCTTAACTTA------AGTGGTATTCATAAAACCACTAAGA-CAAATCTTAGCTAAGA-AAACGTATAAGAAAATAATAATTCTT-AGA-TCAAATATTT---CATCTTAAA--AAAA--ATCTTAACTCGGTAACTAAGGAAGTCTGGGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGTTTGGAAAATACCTTCTATACTATAATCTACTTTAAATGAGTATTGAAATGTCAATGTGGTATGTGAGCTTGTGTGTAGTGT----------G-TTTGTGTATATATACCTATGTGTGTGTA-GGTATNTAGCTGCGNTTGTGTG-T-TGTGTAT-ANAAACTATGTACATGTTAGTCACTCAACTCGTTTTGTGTTTATGTG-TTTAGATATATATATGTTACTACAACAGTGTACTTCGATGAGAAAC--TGTGTATAGTCTTCTTCCCCTTCTCCTCTTCTTTACTTCTTATTCTTCTCCTTCTTTTTCC-GTATTATACTA-AAC--TGGAAATGTAAAATCAAATACAGGGGAACGCGATACTCGTGAACTTTATTTAGAAAAACAATGAATAGATGAATTACTTTAAAAATGTCCCTATCAAAATAGTGTTATGATTATAAATGATATTGCCGCTGTTTTCTACCATAATATAAACCGCTGCG
Reference ( family-589 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATCCAGTGTTTCATCGGAACACAACCTCCCGAGGTCATTAGGACTGTGAGAGTCAAACACCCAATAACAGCCACCCAGTTCAATAATTGCTACAGTGCAGCAGTCAACAGTAAGAAAGCAAATCATTGTCACGGAATGCACTGCATCATCCATGCACTGGAATGGACTGGACCATCAAATATACTTCCCAGGCCATAATTTGATATATTTGAAAGTTTAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTTATGAGTATCATTTAAAAAA--CATCTTATTGCAAAAATCTGATTCTTTACTGCTATTCAGANNNNNNNAAAAATCTGGTTCTTNACNGCTATTCANAGCGTACNTTAANTATNTNCCATTTGGAGCTNGTCGAACTATTTTAGNTNGTGCACGCCNTGACAA-CG--TAGAGTCGATAATATNAAATAATGTT----AATCAAACATTATTAATTTTATTCAGAAGTCAAAATTGATATTTTTGGAATTGATTAGCTCTGTAATCAGTAGTTACATTATGTTTAGTATTATATCAGTCAGTCACTTAT--TGGTCATTAGAAGGGATAGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATAATGA-GTCAATCGGGTCAATACACTTAATGGAAATAGTCCTGGGACCGTATTCATAAAGCTTCTTAGATTTTCGCTAAGAAAATATCTTAGCTCAGTAATATTTTCTTAGCTAAG-ATGAAAACAANTTTTTAACTTAC----GAGTGGTATTCATAAAACCACTAAGA-CAAATCTTAGCTAAGA-AAACGTATAAGAAAATAATAATTCTT-AGA-TCAAATATTT---CATCTTAAA--AAAA--ATCTTAACTCGGTAACTAAGGAAGTCTGGGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGTTTGGAAAATACCTTCTATACTATAATCTACTTTAAATGAGTATTGAAATGTCAATGTGGTATGTGAGCTTGTGTGTAGTGT----------G-TTTGTGTATATATACCTATGTGTGTGTA-GGTATNTNGCTGCGATTGTGTG-C-TGTGTAT-ATAAACTATGTATATGTTAGTCACTCAACTCGTTTTGTGTTTATGTGTTTTAGATATATATATGTTACTACAACAGTGTACTTCGATGAGAAAC--TGTGTATAGTCTTCTTCCCCTTCTTCTCTTTTTTACTTCTTATTCTTCTCCTTCTTTTTTCAGTATTATACTA-AAC--TGGAAATGTAAAATCAAATACAGGGGAACGCGATACTCGTGAACTTTATTTAGAAAAACAATGAATAGATGAATTACTTTAAAAATGTCCCTATCAAAATAGTGTTATGATTATAAATGATATTGCCGCTGTTTTCTACCATAATATAAACCGCTGCG
gi|1 : ATAATCC--TATATCATCAGAACACAACATCCAAAGGT-AT---GA-TCTCAAAGTCAAAGACGTGATAACAACTATCTAGTTTCATAATTGCTACA------------AC---------GCAAATCATTTTCAGGGAATTTAATGCATCATCCATGCACTGGAATGGAAT-----ATAAAATATATTTCCTATACCATAATTTAATATATCTGAAA---TAGTTGACCAAAAACTTTAGTTTGAATATTACTTCCAAACAGTTTATGTGTATCATTTAAAACAGTCATCTTATTGTGAAAATAAATTTCTTTGTTTTTGTTTAAACTAAATAAAAAA---GGTTCTTCACGGTT-TTCACAATGTACCTTTATTATTTACCATTTGGAACTTGTCAAACTATTTTAGATTG-GCA-GTCTTAACAG-GGACCAGAAT-GATAATTGGAAATAA-GTTTCAGAATCAA-TATAA--AACTTCAT---GA--CCAAAATTGAAGTATTTGGAATTGATTAGCTCTTTAACCAATAGTAACAGTGTGTTTAATATTA-ATCAGTC--T--CTTATAAGAGTCTTTAAAAGGGATAGCCC
gi|1 : cattgttccactttcaagcataacttttaaacatgtgacagtgtgctagtcaAAATTATGATGTCA------TCAATTCA---AATAAGAATAGTTCTGGGACCGTATTCATAAAGCTTCTTAGATTTTCGCTAAGAAAATATCTTAACTCAGTAATATTTTCTTAGTTAAC-ATGAAAACAAATTTTTAACTTATTAATAAGTGATATTCATAAAACCACTAAGA-CAAATCTTAGTTAAGA-AAACGTATAAGAAAATAATAATTCTT-AGA-TCAAATATTT---TATCTTAAA--AAAA--ATCTTAACTCGGTAACTAAGGAAGTCTGGGATT-TCCAAATCTTAAAATAGTATCGGAAGAGATAGTTTGGAAAATACCTTCTATGCTATAAGCTGCTTTAAATGAGTATTGAAATGTCAATGTGGTGTGTGAGCTTGTGTGTAGTGT----------G-TTTGTGTATATATACCTATATGTGTGTA-GGTATCTAGCTGTGTTTGGGTGTT-TGTGTAT-AAAAACTATGTACATGTTAGTCACTCAACTCGTTTTGTGTTTATGTG--TTAG--ATATATATGTTACTACAGCAGTGTACTTTGATGAGAAAC--TGTGTATAG-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTC--------GTATTATACTA-AAC--TGGAAATGTAAAATCAAATACAGTGAAACGCGATACTCGTGAACTTTATTTAGAAAAACAATGAATAGATGAATTACTTTAAAAATGTCCCTATCAAAATAGTGTTATGATTATAAATGATATTGCCGCTGTTTTCTACCATAATATAAACCGCTGCGagtctgtgatacatttatttagactattactctgaattgataattcagatacatcgagatacaaattacatttttgctattaaaaaacctacctgtgaaaaaaatatcagtgtgtaaggatttatgaaaaagacaactgaataacagctgcaatatgacatacaaaagtcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataagagaaataattcaattgatattcaatgaagacataatgccttgttgaaagagggtctaaacgaggctatgaaaatttcacaaaattattcaaagtggttacaaatttgtgacagacatgaaattataaacattgtcttttgccaatttcagtacatttaagtgatttgttttttcatcattgaagtaagtatttggaacttgcgcaaaacatatcattgaatgataaatgtagctaaaatatttgcaatggtttgcatggtaatgtgagatggtttatacaggctggacactgtattgtcatagcattaacaaatgggtgagcagacatgcagaaaaatggcaatttcatagtaaaaaattatttagatggagattaaatgaaggggaaacatggaaattgagtatataaattggtgtcattttttcccttttccagaatttagactgattaaacaaaggtttgatagacaatatttcatattctggccagattcttatcaagttattcatcacctttaaggttccagtattctcttgcagagaaattctatgtaaaactatactgttatttgtttccaagtcaatgaaccaacagttatatttataaaataagatcaggctaaaacttactataattagcccctaaaacccatgtatctgctctggtaaacagtgtgaaaccaatacagatctctttcatttggtgcaattgggattgagacaaattttaccaaatgattataactttatattttcacaaaggctccagtttgggaaacagtgagtttcaattgaaaaatataaacaaaagctataaatttcacataatcaatgacagttatatctaaactatctaaactgtctctaacaactcccaaattatgtacaaatatttaaaaaaatgacaatgacatcacaaaatgaaattatgatgtcatcaattcaaataagaatagttctgggaccgtattcataaagcttcttagattttcgctaagaaaatatcttaactcagtaatattttcttagttaacatgaaaacaaatttttaacttattaataagtgatattcataaaaccactaagacaaatcttagttaagaaaacgtataagaaaataataattcttagatcaaatattttatcttaaaaaaaatcttaactcggtaactaaggaagtctgggatttccaaatcttaaaatagtatcggaagagatagtttggaaaataccttctatgctataagctgctttaaatgagtattgaaatgtcaatgtggtgtgtgagcttgtgtgtagtgtgtttgtgtatatatacctatatgtgtgtaggtatctagctgtgtttgggtgtttgtgtataaaaactatgtacatgttagtcactcaactcgttttgtgtttatgtgttagatatatatgttactacagcagtgtactttgatgagaaactgtgtatagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattcgtattatactaaactggaaatgtaaaatcaaatacagtgaaacgcgatactcgtgaactttatttagaaaaacaatgaatagatgaattactttaaaaatgtccctatcaaaatagtgttatgattataaatgatattgccgctgttttctaccataatataaaccgctgcgg
gi|10 : cattgttccactttcaagcataacttttaaacatgtgacagtgtgctagtcaataatcctatatcatcagaacacaacatccaaaggtatgatctcaaagtcaaagacgtgataacaactatctagtttcataattgctacaacgcaaatcattttcagggaatttaatgcatcatccatgcactggaatggaatataaaatatatttcctataccataatttaatatatctgaaatagttgaccaaaaactttagtttgaatattacttccaaacagtttatgtgtatcatttaaaacagtcatcttattgtgaaaataaatttctttgtttttgtttaaactaaataaaaaaggttcttcacggttttcacaatgtacctttattatttaccatttggaacttgtcaaactattttagattggcagtcttaacagggaccagaatgataattggaaataagtttcagaatcaatataaaacttcatgaccaaaattgaagtatttggaattgattagctctttaaccaatagtaacagtgtgtttaatattaatcagtctcttataagagtctttaaaagggatagcccagtctgtgatacatttatttagactattactctgaattgataattcagatacatcgagatacaaattacatttttgctattaaaaaacctacctgtgaaaaaaatatcagtgtgtaaggatttatgaaaaagacaactgaataacagctgcaatatgacatacaaaagtcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataagagaaataattcaattgatattcaatgaagacataatgccttgttgaaagagggtctaaacgaggctatgaaaatttcacaaaattattcaaagtggttacaaatttgtgacagacatgaaattataaacattgtcttttgccaatttcagtacatttaagtgatttgttttttcatcattgaagtaagtatttggaacttgcgcaaaacatatcattgaatgataaatgtagctaaaatatttgcaatggtttgcatggtaatgtgagatggtttatacaggctggacactgtattgtcatagcattaacaaatgggtgagcagacatgcagaaaaatggcaatttcatagtaaaaaattatttagatggagattaaatgaaggggaaacatggaaattgagtatataaattggtgtcattttttcccttttccagaatttagactgattaaacaaaggtttgatagacaatatttcatattctggccagattcttatcaagttattcatcacctttaaggttccagtattctcttgcagagaaattctatgtaaaactatactgttatttgtttccaagtcaatgaaccaacagttatatttataaaataagatcaggctaaaacttactataattagcccctaaaacccatgtatctgctctggtaaacagtgtgaaaccaatacagatctctttcatttggtgcaattgggattgagacaaattttaccaaatgattataactttatattttcacaaaggctccagtttgggaaacagtgagtttcaattgaaaaatataaacaaaagctataaatttcacataatcaatgacagttatatctaaactatctaaactgtctctaacaactcccaaattatgtacaaatatttaaaaaaatgacaatgacatcacaaaatgACTTTATTTAGAAAAACAATG-ATAGATg
gi|10 : gtTGAATTACTTTAAAAATGTCACTATCAAAATAGTGTTATGATTATAAATGATATTGCCGCAGTTTTCTACCATAATATAAACCatatataaataattaatgtatctaaatgtattcaaaagtattcgcagtgaattactttaaaaatgtcactatcaaaatagtgttatgattataaatgatattgccgcagttttctaccataatataaacctc
gi|11 : gtactttatttagaaaaacaatgatagatatatataaataattaatgtatctaaatgtattcaaaagtattcgcagCTAGGATTATATTCATAAAGCCTCTTAGATTGTTTCCAA--------TTTAGCT---------------AACTAAACGTAAAAACAAGCACTCAATT-------GAGTTGTATTCATAAAACAACTGAGAACAAATCTGAGCT----------TATAAGAAAATTAAAATTGTTAAGAGTCAGG-ATTTAAGTATCTTCAA--tc
gi|12 : TGAATTACCTTAAAAATGTCCTTATTAATATAGTGTAATGGTTATAAATAATATTTCTGCTGTTTTCTACCATAATATAAAACGGTGCG
gi|13 : ttgatatatatataaattatatatatattaataattattgtaaatgtattcaaaagtttttgcagATTTGTTACTACAACATTATATTTTGGTGAGAAGCTATATGTAAAGTTTTCTTCTTCTT-TCTTCTTCTTT-CTTTTTATTCTTCTCCTACTTTTTCTTGAATAACAATA-AACATTGAACA---AAAATTGAAC-CGGGGG
gi|14 : TCAATGATATTTTCTTAGCTAAG-ATGAAAACAAGTTCTTAACT--C----GAGTGGCATTTATAAAACCACTGAGA-AATATTTT-GCTAAGA-TTGAGTTTAAGAAAATAATCA---TT-AAG-TAAAATA------CATATTAA
gi|15 : TATTT---CATAATAAA--AAAATCATCT--ACTCTGTATCTA--GAAGTGAGTGATT-TCGAAATCTTCAAATAGTATTTGAGGTGATAATTTGGAAACTGCCTTCTGTAtgtt
gi|2 : CCATATTCATAAAGCTCCTTAGATTTTCGCTAAGAAAATATCTTAACTCAGTAATATTTTCTTAGTCAAG-ATGAAAACAAATTTTTAACTTA------AGTGGTATTCATAAAACCACTAAGA-CAAATCTTAGTTAAGA-AAACGTATAAGAAAATAATAATTCTT-AGA-TCAAATATTT---CATCTTAAA--AAAA--ACCTTAACTCGGTAACTAAGGAAATCTGGGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGTTTTGAAAATACCTTCTATACTATAATCTACTTTAACTGAGTAATGAAATGTCAATGTGGTATGTGAGCTTGTGTGTAGTGT----------G-TTTGTGTATATATACCTATGTGTGTGTAGGGTATCTGGCTGTGTTTGTGTG-TATGTGTAT-GTAAACTATGTACATGTTAGTCACTCAACTCGTTTTGTGTTTATGTA-TTTAGATATATATATGTTACTACAACAGTGTACTTCGATGAGAAAC--TGTGTATAGTCTTCTTCCCCTTCTTCTCTTTTTTACTTCTTATTCTTCTCCTTCTTTTTTCAGTATTATACTACAAC--TGGAAATGTAAAATCAAACACAGGGGAACGCGATACTCGTGAACTTTATATAGAAAAACAATGAATAGATaa
gi|2 : TGAATTACTTTAAAAATGTCCCTATTAAAATAGTGAAATGATTATAAATGATATTGCCACTGTTTTCTGCCATAATATAAACCGCTGTGatatataaatatattagtgtatctaaatgtattcaaaagttttcgcagtgaattactttaaaaatgtccctattaaaatagtgaaatgattataaatgatattgccactgttttctgccataatataaaccgctgtg
gi|3 : ccatattcataaagctccttagattttcgctaagaaaatatcttaactcagtaatattttcttagtcaagatgaaaacaaatttttaacttaagtggtattcataaaaccactaagacaaatcttagttaagaaaacgtataagaaaataataattcttagatcaaatatttcatcttaaaaaaaaccttaactcggtaactaaggaaatctgggatttccaaatcttaaaatagtatcggaagtgatagttttgaaaataccttctatactataatctactttaactgagtaatgaaatgtcaatgtggtatgtgagcttgtgtgtagtgtgtttgtgtatatatacctatgtgtgtgtagggtatctggctgtgtttgtgtgtatgtgtatgtaaactatgtacatgttagtcactcaactcgttttgtgtttatgtatttagatatatatatgttactacaacagtgtacttcgatgagaaactgtgtatagtcttcttccccttcttctcttttttacttcttattcttctccttcttttttcagtattatactacaactggaaatgtaaaatcaaacacaggggaacgcgatactcgtgaactttatatagaaaaacaatgaatagatatatataaatatattagtgtatctaaatgtattcaaaagttttcgcagATAATCCAGTGTTTCATCGGAACACAACCTCCCGAGGTCATTAGGACTGTGAGAGTCAAACACCCAATAACAGCCACCCAGTTCAATAATTGCTACAGTGCAGCAGTCAACAGTAAGAAAGCAAATCATTGTCACGGAATGCACTGCATCATCCATGCACTGGAATGGACTGGACCATCAAATATACTTCCCAGGCCATAATTTGATATATTTGAAAGTTTAGTT
gi|3 : AGTTTATGAGTATCATTTAAA----------------AAACATCT-------TATTGC---------------AAAAATCTGATTCTTTACTGCTATTCAGAGCGTATCTTAAATATTTACCATTTGGAACTAGTCAAACTATTTTAGGTAG-GCA-GTCTAGAGAGTCT--TAGAG-GGTTAATTTAAAAtatgagtatcatttaaaaaacatcttattgcaaaaatctgattctttactgctattcagagcgtatcttaaatatttaccatttggaactagtcaaactattttaggtaggcagtctagagagtcttagagggttaatttaaaactttatgactgtggtcctaaaacacatgagtggaattctatttattccacgaaagacatccaaccaattgtaaccaattgtaataatatcaaataatgttaatcaaacattattaattttattcagaagtcaaaattgatatttttggaattgattagctctgtaatcagtagttacattatgtttagtattatatcagtcagtcacttattggtcattagaagggatagccct
gi|3 : ataatccagtgtttcatcggaacacaacctcccgaggtcattaggactgtgagagtcaaacacccaataacagccacccagttcaataattgctacagtgcagcagtcaacagtaagaaagcaaatcattgtcacggaatgcactgcatcatccatgcactggaatggactggaccatcaaatatacttcccaggccataatttgatatatttgaaagtttATAATATCAAATAATGTT----AATCAAACATTATTAATTTTATTCAGAAGTCAAAATTGATATTTTTGGAATTGATTAGCTCTGTAATCAGTAGTTACATTATGTTTAGTATTATATCAGTCAGTCACTTAT--TGGTCATTAGAAGGGATAGCCCctttatgactgtggtcctaaaacacatgagtggaattctatttattccacgaaagacatccaaccaattgtaaccaattgtaataatatcaaataatgttaatcaaacattattaattttattcagaagtcaaaattgatatttttggaattgattagctctgtaatcagtagttacattatgtttagtattatatcagtcagtcacttattggtcattagaagggatagccct
gi|4 : ataatccagtgtttcatcggaacacaacctcccgaggtcattaggactgtgagagtcaaacacccaataacagccacccagttcaataattgctacagtgcagcagtcaacagtaagaaagcaaatcattgtcacggaatgcactgcatcatccatgcactggaatggactggaccatcaaatatacttcccaggccataatttgatatatttgaaagtttagtttatgagtatcatttaaaaaacatcttattgcaaaaatctgattctttactgctattcagagcgtatcttaaatatttaccatttggaactagtcaaactattttaggtaggcagtctagagagtcttagagggttaatttaaaactttatgactgtggtcctaaaacacatgagtggaattctatttattccacgaaagacatccaaccaattgtaaccaattgtaTAATCTTGGTGCCGTATTCATAAAGCTTCTTAGATTTTCGCTAAGAAAATATCTTAACTCAGTAATATTTTCTAAGCTAAG-ATGAAAACATTTTTTTAACTTA------AGTGGTATTCATAAAACCACTAAGA-CAAATCTTAGTTAAGA-AAACGTATAAGAAAATAATAATTCAT-AGA-TCAAATATTT---GATCTTAAA--A-AA--ATCTTAACTCGGTAACTAAGGAAGTCTGGGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGTTTGGAAAATACCTTCTATACTATAATCTACTTTAAATGAGTATTACAATGTCAATGTGGTA--TGAGCTTGTGTGTAGTGTCACTCAACTCGTTTTGTGTTTATGTGTTTAGATATATATA-TATATGTTACTGCAACAGTGTA-C-TTTG-ATGAGAAACTGTGTATAt
gi|5 : aaatgttaatttgtttaacaaaaattgttttacatgAAATAATGA-GTCAATCGGGTCAATACACTTAATGGAAAAAGACCAGGAGCCGTATTCCTATAGCTTCTTAGAGTTTCGCTTAGAAAATATCTTAGCTCAGTAATATTTTCTTAGCTAAG-ATAAAAACAATTTTTTAACTTA------AGTGGTATTCATAAAACCAATAAGA-CAAATCTGAGTTAAGA-AAACGTTTAAGAAAATAATAATTCTG-AGA-CCAAATATCT---CATCTTTAA--AAAA--ATCTTAACTCGGTAAATAAGGAAGTCTGGTATT-TCCAAATCTCAAAACAGTATCAGAAGTGATAGTTTGGAAAATACATTCTATACTATAATCTACTTTAAATGAGTATTGAAATGTCAATGTGGTATGTGAGCGTGTGTGTAGTGT-------------TTGTGTATATATACCTATGTGTGTGTA-GG-GTATAGATATGAAT---TG-A-TATATAT-ATAAATTATATATATATTA
gi|6 : CTTAGACAATACCTTAACTCAATTATATTTTA--AGCTAAG-ATGAAAATAATTTCCTAAT---------AATCACATTCAGTGAACCACAAAAA-C--ATCGTAGCTAAAATAAA
gi|6 : aatagccagtaattgttcggaccatgtagtttagtttaaacTAAATTAAAA--AGTTTAACTAGTTAATTATGGATGTCGGGGATTGTCCAT-TCTTAAA-TGGTATCGGAAAAGACAGTTTGTAAAATATTGTTTATttaaaaagtttaactagttaattatggatgtcggggattgtccattcttaaatggtatcggaaaagacagtttgtaaaatattgtttat
gi|7 : aatagccagtaattgttcggaccatgtagtttagtttaaaccttagacaataccttaactcaattatattttaagctaagatgaaaataatttcctaataatcacattcagtgaaccacaaaaacatcgtagctaaaaTACTA-AAC--TGGAAATGTAAAATCAAATACAGGGGAACGCAATACTCGTGAACTTTATTTAGAAAAACAATGA
gi|7 : TGAATTACTTTAAAAATGTCCCTATCAAAATAGTGTTATGATTATAAATGATATTGCCGCTGTTTTCTACCATAATATAAACCGCTGCGnnnnnnnnnnnnnnnnnnnnnnnnnaataattagtctatcttaatgtattcaaaagttttcgcagtgaattactttaaaaatgtccctatcaaaatagtgttatgattataaatgatattgccgctgttttctaccataatataaaccgctgcg
gi|8 : tactaaactggaaatgtaaaatcaaatacaggggaacgcaatactcgtgaactttatttagaaaaacaatgannnnnnnnnnnnnnnnnnnnnnnnnaataattagtctatcttaatgtattcaaaagttttcgcagACTA-AAC--TGGAAATGTAAAATCAAATACAGGGGAACGCAATACTCGTGAACTTTATTTAGAAAAACAATGAATATAT
gi|8 : TGAATTACTTTAAAAATGTCCCTATCAAAATAGTGTTATGATTATAAATGATATTGCCGCTGTTTTCTACCATAATATAAACCGCTGCGatatatatatatataaataattagtctatcttaatgtattcaaaagttttcgcagtgaattactttaaaaatgtccctatcaaaatagtgttatgattataaatgatattgccgctgttttctaccataatataaaccgctgcg
gi|9 : actaaactggaaatgtaaaatcaaatacaggggaacgcaatactcgtgaactttatttagaaaaacaatgaatatatatatatatatatataaataattagtctatcttaatgtattcaaaagttttcgcagCTAGTTTTTAATAGTT-TTTATAGCGTAC---AATTATGTCCCAT--GGAG-TTGTCG--CTATTTT-GTTTGTACACGCCATGACAA-CG--TAGAGTCGATAA---GAAATAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ATAGTCCGCAGTTATTTCATGGAGTTGTCGCTATTTTGTCATGGCAACGTGTCGTTAAGAAATAAGTTATAAAGTTGTTTGTTTTAAAGGATCAA
Alignments
lowQualScore : 11 1 222 1 66666666666666666666666 22222 222 2 222222 333 11 1 1 1 1 22222 1 1111 1 2222 1 11 222 11 1 22222 111 1 222222 222 111111 111 4444444444 1 1 222 1 1 11 11 1 1 111 2222 11
lowQualScore : 88 1 1 2 5 111 5 1 1 1 1 1 44444444444444444444444 1 1 1 1 1 55555 1 1 111 0 444444 555 1 2 88 1 4444 1 5 1 1 3 1 6 7 6 88 7 1 3 3 88888 0 0000 5 3333 5 1 88 111 88 1 1 1 1 1 5 77777 999 1 1 5 888888 1 111 0 0 33 5 1 4 666666 5 5 6 6 000 3 77 99 3 6 3 2 3333333333 0 0 3 1 1 2 22 55 111 0 3 0 1 5 88 0 88 0 0 333 2222 8 11 0 0 0
lowQualScore : .. . . . . ... . . . . . . ....................... . . . . . ..... . . ... . ...... ... . . .. . .... . . . . . . . . . .. . . . . ..... . .... . .... . . .. ... .. . . . . . . ..... ... . . . ...... . ... . . .. . . . ...... . . . . ... . .. .. . . . . .......... . . . . . . .. .. ... . . . . . .. . .. . . ... .... . .. . . .
lowQualScore : 00 0 0 5 0 000 0 0 0 0 0 0 55555555555555555555555 0 0 0 0 0 55555 0 0 000 0 555555 000 0 5 00 0 5555 0 5 0 0 3 0 7 3 7 00 3 0 3 3 33333 0 0000 5 5555 5 0 55 000 00 0 0 0 0 0 5 00000 555 0 0 5 555555 0 000 2 3 00 7 0 3 444444 7 7 7 7 000 4 99 22 5 7 2 5 8888888888 0 0 2 0 2 0 22 55 222 2 2 0 0 5 55 7 33 3 7 333 7777 0 00 8 8 8
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATCCAGTGTNTCATCGGAACACAACNTCCCGAGGTCATTAGGACTNTNAGAGTCAAANACNCGATAACAGCCACCCAGTTCNATAATTGCTACAGTGCAGCAGTCAACAGTAAGAAAGCAAATCATTNTCANGGAATNCANTGCATCATCCATGCACTGGAATGGANTGGACCATNAAATATACTTCCCANGCCATAATTTGATATATCTGAAAGTTTAGTTGACCAAAAACTTTAGTTTGATATATTACTTCGAAAGTTCAGTTTATGNGTATCATTTAAAANAGTCATCTTATTGCGAAAATNNGNTTCTTTGCTNCTGTTCAGACTAAATAAAAAATCTGGTTCTTNACNGTT-TTCANAGCGTACCTTAATTATTTACCATTTGGAACTTGTCGAACTATTTTAGNTTG-GCA-GTCTTGACAG-CG--TAGAGT-GATAATTTGAAATAATGTTTCAGAATCAAACATNATTAACTTCATTCAGAAGCCAAAATTGANGTNTTTGGAATTGATTAGCTCTNTAACCAGTAGTNACANTGTGTTTAGTATTATATCAGTCAGTCACTTATAANGGTCNTTAGAAGGGATAGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATNATGATGTCAATCGGGTCAATNCACTTAATGGGAATAGTCCTGGGGCCGTATTCATAAAGCTTCTTAGATTTTCGCTAAGAAAATATCTTAACTCAGTAATATTTTCTTAGCTAAG-ATGAAAACAANTTCTTAACTTA------AGTGGTATTCATAAAACCACTAAGA-CAAATCTTAGCTAAGA-AAACGTATAAGAAAATAATAATTCTT-AGA-TCAAATATTT---CATCTTAAA--AAAA--ATCTTAACTCGGTAACTAAGGAAGTCTGGGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGTTTGGAAAATACCTTCTATACTATAATCTACTTTAAATGAGTATTGAAATGTCAATGTGGTATGTGAGCTTGTGTGTAGTGT----------G-TTTGTGTATATATACCTATGTGTGTGTA-GGTATNTAGCTGCGNTTGTGTG-T-TGTGTAT-ANAAACTATGTACATGTTAGTCACTCAACTCGTTTTGTGTTTATGTGTTTAGATATATATATGTTACTACAACAGTGTACTTCGATGAGAAAC--TGTGTATAGTCTTCTTCCCCTTCTCCTCTTCTTTACTTCTTATTCTTCTCCT-CTTTTTT-C-GTATTATACTA-AAC--TGGAAATGTAAAATCAAATACAGGGGAACGCGATACTCGTGAACTTTATTTAGAAAAACAATGAATAGATGAATTACTTTAAAAATGTCCCTATCAAAATAGTGTTATGATTATAAATGATATTGCCGCTGTTTTCTACCATAATATAAACCGCTGCG
Reference ( family-589 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATCCAGTGTNTCATCGGAACACAACNTCCCGAGGTCATTAGGACTNTNAGAGTCAAANACNCGATAACAGCCACCCAGTTCNATAATTGCTACAGTGCAGCAGTCAACAGTAAGAAAGCAAATCATTNTCANGGAATNCANTGCATCATCCATGCACTGGAATGGANTGGACCATNAAATATACTTCCCANGCCATAATTTGATATATCTGAAAGTTTAGTTGACCAAAAACTTTAGTTTGA-ATATTACTTCCAAA---CAGTTTATGNGTATCATTTAAAACAGTCATCTTATTGTGAANATNNATTTCTTTGTTNCTGTTTAAACTAAATAAAAAATCTGGTTCTTNACNGTT-TTCANAGCGTACCTTAATTATTTACCATTTGGAACTTGTCGAACTATTTTAGNTTG-GCA-GTCTTGACAG-CG--TAGAGT-GATAATTTGAAATAATGTTTCAGAATCAAACATNATTAACTTCATTCAGAAGCCAAAATTGANGTNTTTGGAATTGATTAGCTCTNTAACCAGTAGTNACANTGTGTTTAGTATTATATCAGTCAGTCACTTATAANGGTCNTTAGAAGGGATAGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATNATGATGTCAATCGGGTCAATNCACTTAATGGGAATAGTCCTGGGGCCGTATTCATAAAGCTTCTTAGATTTTCGCTAAGAAAATATCTTAACTCAGTAATATTTTCTTAGCTAAG-ATGAAAACAANTTCTTAACTTA------AGTGGTATTCATAAAACCACTAAGA-CAAATCTTAGCTAAGA-AAACGTATAAGAAAATAATAATTCTT-AGA-TCAAATATTT---CATCTTAAA--AAAA--ATCTTAACTCGGTAACTAAGGAAGTCTGGGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGTTTGGAAAATACCTTCTATACTATAATCTACTTTAAATGAGTATTGAAATGTCAATGTGGTATGTGAGCTTGTGTGTAGTGT----------G-TTTGTGTATATATACCTATGTGTGTGTA-GGTATNTAGCTGCGNTTGTGTG-T-TGTGTAT-ANAAACTATGTACATGTTAGTCACTCAACTCGTTTTGTGTTTATGTGTTTAGATATATATATGTTACTACAACAGTGTACTTCGATGAGAAAC--TGTGTATAGTCTTCTTCCCCTTCTCCTCTTCTTTACTTCTTATTCTTCTCCTTCTTTTTC-C-GTATTATACTA-AAC--TGGAAATGTAAAATCAAATACAGGGGAACGCGATACTCGTGAACTTTATTTAGAAAAACAATGAATAGATGAATTACTTTAAAAATGTCCCTATCAAAATAGTGTTATGATTATAAATGATATTGCCGCTGTTTTCTACCATAATATAAACCGCTGCG
gi|1 : ATAATCC--TATATCATCAGAACACAACATCCAAAGGT-AT---GA-TCTCAAAGTCAAAGACGTGATAACAACTATCTAGTTTCATAATTGCTACA------------AC---------GCAAATCATTTTCAGGGAATTTAATGCATCATCCATGCACTGGAATGGAAT-----ATAAAATATATTTCCTATACCATAATTTAATATATCTGAAA---TAGTTGACCAAAAACTTTAGTTTGA-ATATTACTTCCAAA---CAGTTTATGTGTATCATTTAAAACAGTCATCTTATTGTGAAAATAAATTTCTTTGTTTTTGTTTAAACTAAATAAAAAA---GGTTCTTCACGGTT-TTCACAATGTACCTTTATTATTTACCATTTGGAACTTGTCAAACTATTTTAGATTG-GCA-GTCTTAACAG-GGACCAGAAT-GATAATTGGAAATAA-GTTTCAGAATC-AATATAA--AACTTCAT---GA--CCAAAATTGAAGTATTTGGAATTGATTAGCTCTTTAACCAATAGTAACAGTGTGTTTAATATTA-ATCAGTC--T--CTTATAAGAGTCTTTAAAAGGGATAGCCC
gi|1 : cattgttccactttcaagcataacttttaaacatgtgacagtgtgctagtcaAAATTATGATGTCA------TCAATTCA---AATAAGAATAGTTCTGGGACCGTATTCATAAAGCTTCTTAGATTTTCGCTAAGAAAATATCTTAACTCAGTAATATTTTCTTAGTTAAC-ATGAAAACAAATTTTTAACTTATTAATAAGTGATATTCATAAAACCACTAAGA-CAAATCTTAGTTAAGA-AAACGTATAAGAAAATAATAATTCTT-AGA-TCAAATATTT---TATCTTAAA--AAAA--ATCTTAACTCGGTAACTAAGGAAGTCTGGGATT-TCCAAATCTTAAAATAGTATCGGAAGAGATAGTTTGGAAAATACCTTCTATGCTATAAGCTGCTTTAAATGAGTATTGAAATGTCAATGTGGTGTGTGAGCTTGTGTGTAGTGT----------G-TTTGTGTATATATACCTATATGTGTGTA-GGTATCTAGCTGTGTTTGGGTGTT-TGTGTAT-AAAAACTATGTACATGTTAGTCACTCAACTCGTTTTGTGTTTATGTG-TTAG--ATATATATGTTACTACAGCAGTGTACTTTGATGAGAAAC--TGTGTATAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA--------TT-C-GTATTATACTA-AAC--TGGAAATGTAAAATCAAATACAGTGAAACGCGATACTCGTGAACTTTATTTAGAAAAACAATGAATAGATGAATTACTTTAAAAATGTCCCTATCAAAATAGTGTTATGATTATAAATGATATTGCCGCTGTTTTCTACCATAATATAAACCGCTGCGagtctgtgatacatttatttagactattactctgaattgataattcagatacatcgagatacaaattacatttttgctattaaaaaacctacctgtgaaaaaaatatcagtgtgtaaggatttatgaaaaagacaactgaataacagctgcaatatgacatacaaaagtcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataagagaaataattcaattgatattcaatgaagacataatgccttgttgaaagagggtctaaacgaggctatgaaaatttcacaaaattattcaaagtggttacaaatttgtgacagacatgaaattataaacattgtcttttgccaatttcagtacatttaagtgatttgttttttcatcattgaagtaagtatttggaacttgcgcaaaacatatcattgaatgataaatgtagctaaaatatttgcaatggtttgcatggtaatgtgagatggtttatacaggctggacactgtattgtcatagcattaacaaatgggtgagcagacatgcagaaaaatggcaatttcatagtaaaaaattatttagatggagattaaatgaaggggaaacatggaaattgagtatataaattggtgtcattttttcccttttccagaatttagactgattaaacaaaggtttgatagacaatatttcatattctggccagattcttatcaagttattcatcacctttaaggttccagtattctcttgcagagaaattctatgtaaaactatactgttatttgtttccaagtcaatgaaccaacagttatatttataaaataagatcaggctaaaacttactataattagcccctaaaacccatgtatctgctctggtaaacagtgtgaaaccaatacagatctctttcatttggtgcaattgggattgagacaaattttaccaaatgattataactttatattttcacaaaggctccagtttgggaaacagtgagtttcaattgaaaaatataaacaaaagctataaatttcacataatcaatgacagttatatctaaactatctaaactgtctctaacaactcccaaattatgtacaaatatttaaaaaaatgacaatgacatcacaaaatgaaattatgatgtcatcaattcaaataagaatagttctgggaccgtattcataaagcttcttagattttcgctaagaaaatatcttaactcagtaatattttcttagttaacatgaaaacaaatttttaacttattaataagtgatattcataaaaccactaagacaaatcttagttaagaaaacgtataagaaaataataattcttagatcaaatattttatcttaaaaaaaatcttaactcggtaactaaggaagtctgggatttccaaatcttaaaatagtatcggaagagatagtttggaaaataccttctatgctataagctgctttaaatgagtattgaaatgtcaatgtggtgtgtgagcttgtgtgtagtgtgtttgtgtatatatacctatatgtgtgtaggtatctagctgtgtttgggtgtttgtgtataaaaactatgtacatgttagtcactcaactcgttttgtgtttatgtgttagatatatatgttactacagcagtgtactttgatgagaaactgtgtatagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattcgtattatactaaactggaaatgtaaaatcaaatacagtgaaacgcgatactcgtgaactttatttagaaaaacaatgaatagatgaattactttaaaaatgtccctatcaaaatagtgttatgattataaatgatattgccgctgttttctaccataatataaaccgctgcgg
gi|10 : cattgttccactttcaagcataacttttaaacatgtgacagtgtgctagtcaataatcctatatcatcagaacacaacatccaaaggtatgatctcaaagtcaaagacgtgataacaactatctagtttcataattgctacaacgcaaatcattttcagggaatttaatgcatcatccatgcactggaatggaatataaaatatatttcctataccataatttaatatatctgaaatagttgaccaaaaactttagtttgaatattacttccaaacagtttatgtgtatcatttaaaacagtcatcttattgtgaaaataaatttctttgtttttgtttaaactaaataaaaaaggttcttcacggttttcacaatgtacctttattatttaccatttggaacttgtcaaactattttagattggcagtcttaacagggaccagaatgataattggaaataagtttcagaatcaatataaaacttcatgaccaaaattgaagtatttggaattgattagctctttaaccaatagtaacagtgtgtttaatattaatcagtctcttataagagtctttaaaagggatagcccagtctgtgatacatttatttagactattactctgaattgataattcagatacatcgagatacaaattacatttttgctattaaaaaacctacctgtgaaaaaaatatcagtgtgtaaggatttatgaaaaagacaactgaataacagctgcaatatgacatacaaaagtcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataagagaaataattcaattgatattcaatgaagacataatgccttgttgaaagagggtctaaacgaggctatgaaaatttcacaaaattattcaaagtggttacaaatttgtgacagacatgaaattataaacattgtcttttgccaatttcagtacatttaagtgatttgttttttcatcattgaagtaagtatttggaacttgcgcaaaacatatcattgaatgataaatgtagctaaaatatttgcaatggtttgcatggtaatgtgagatggtttatacaggctggacactgtattgtcatagcattaacaaatgggtgagcagacatgcagaaaaatggcaatttcatagtaaaaaattatttagatggagattaaatgaaggggaaacatggaaattgagtatataaattggtgtcattttttcccttttccagaatttagactgattaaacaaaggtttgatagacaatatttcatattctggccagattcttatcaagttattcatcacctttaaggttccagtattctcttgcagagaaattctatgtaaaactatactgttatttgtttccaagtcaatgaaccaacagttatatttataaaataagatcaggctaaaacttactataattagcccctaaaacccatgtatctgctctggtaaacagtgtgaaaccaatacagatctctttcatttggtgcaattgggattgagacaaattttaccaaatgattataactttatattttcacaaaggctccagtttgggaaacagtgagtttcaattgaaaaatataaacaaaagctataaatttcacataatcaatgacagttatatctaaactatctaaactgtctctaacaactcccaaattatgtacaaatatttaaaaaaatgacaatgacatcacaaaatgACTTTATTTAGAAAAACAATG-ATAGATg
gi|10 : gtTGAATTACTTTAAAAATGTCACTATCAAAATAGTGTTATGATTATAAATGATATTGCCGCAGTTTTCTACCATAATATAAACCatatataaataattaatgtatctaaatgtattcaaaagtattcgcagtgaattactttaaaaatgtcactatcaaaatagtgttatgattataaatgatattgccgcagttttctaccataatataaacctc
gi|11 : gtactttatttagaaaaacaatgatagatatatataaataattaatgtatctaaatgtattcaaaagtattcgcagCTAGGATTATATTCATAAAGCCTCTTAGATTGTTTCCAA--------TTTAGCT---------------AACTAAACGTAAAAACAAGCACTCAA-TTG------AGTTGTATTCATAAAACAACTGAGAACAAATCTGAGCT----------TATAAGAAAATTAAAATTGTTAAGAGTCAGG-ATTTAAGTATCTTCAA--tc
gi|12 : TGAATTACCTTAAAAATGTCCTTATTAATATAGTGTAATGGTTATAAATAATATTTCTGCTGTTTTCTACCATAATATAAAACGGTGCG
gi|13 : ttgatatatatataaattatatatatattaataattattgtaaatgtattcaaaagtttttgcagATTTGTTACTACAACATTATATTTTGGTGAGAAGCTATATGTAAAGTTTTCTTCTTCTT-TCTTCTTCTTT-CTTTTTATTCTTCTCCTACTTTTTCTT-GAATAACAATA-AACATTGAACA---AAAATTGAAC-CGGGGG
gi|14 : TCAATGATATTTTCTTAGCTAAG-ATGAAAACAAGTTCTTAACTCG------AGTGGCATTTATAAAACCACTGAGA-AATATTTT-GCTAAGA-TTGAGTTTAAGAAAATAATCA---TT-AAG-TAAAATA------CATATTAA
gi|15 : TATTT---CATAATAAA--AAAATCATCT--ACTCTGTATCTA--GAAGTGAGTGATT-TCGAAATCTTCAAATAGTATTTGAGGTGATAATTTGGAAACTGCCTTCTGTAtgtt
gi|2 : CCATATTCATAAAGCTCCTTAGATTTTCGCTAAGAAAATATCTTAACTCAGTAATATTTTCTTAGTCAAG-ATGAAAACAAATTTTTAACTTA------AGTGGTATTCATAAAACCACTAAGA-CAAATCTTAGTTAAGA-AAACGTATAAGAAAATAATAATTCTT-AGA-TCAAATATTT---CATCTTAAA--AAAA--ACCTTAACTCGGTAACTAAGGAAATCTGGGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGTTTTGAAAATACCTTCTATACTATAATCTACTTTAACTGAGTAATGAAATGTCAATGTGGTATGTGAGCTTGTGTGTAGTGT----------G-TTTGTGTATATATACCTATGTGTGTGTAGGGTATCTGGCTGTGTTTGTGTG-TATGTGTAT-GTAAACTATGTACATGTTAGTCACTCAACTCGTTTTGTGTTTATGTATTTAGATATATATATGTTACTACAACAGTGTACTTCGATGAGAAAC--TGTGTATAGTCTTCTTCCCCTTCTTCTCTTTTTTACTTCTTATTCTTCTCCTTCTTTTTT-CAGTATTATACTACAAC--TGGAAATGTAAAATCAAACACAGGGGAACGCGATACTCGTGAACTTTATATAGAAAAACAATGAATAGATaa
gi|2 : TGAATTACTTTAAAAATGTCCCTATTAAAATAGTGAAATGATTATAAATGATATTGCCACTGTTTTCTGCCATAATATAAACCGCTGTGatatataaatatattagtgtatctaaatgtattcaaaagttttcgcagtgaattactttaaaaatgtccctattaaaatagtgaaatgattataaatgatattgccactgttttctgccataatataaaccgctgtg
gi|3 : ccatattcataaagctccttagattttcgctaagaaaatatcttaactcagtaatattttcttagtcaagatgaaaacaaatttttaacttaagtggtattcataaaaccactaagacaaatcttagttaagaaaacgtataagaaaataataattcttagatcaaatatttcatcttaaaaaaaaccttaactcggtaactaaggaaatctgggatttccaaatcttaaaatagtatcggaagtgatagttttgaaaataccttctatactataatctactttaactgagtaatgaaatgtcaatgtggtatgtgagcttgtgtgtagtgtgtttgtgtatatatacctatgtgtgtgtagggtatctggctgtgtttgtgtgtatgtgtatgtaaactatgtacatgttagtcactcaactcgttttgtgtttatgtatttagatatatatatgttactacaacagtgtacttcgatgagaaactgtgtatagtcttcttccccttcttctcttttttacttcttattcttctccttcttttttcagtattatactacaactggaaatgtaaaatcaaacacaggggaacgcgatactcgtgaactttatatagaaaaacaatgaatagatatatataaatatattagtgtatctaaatgtattcaaaagttttcgcagATAATCCAGTGTTTCATCGGAACACAACCTCCCGAGGTCATTAGGACTGTGAGAGTCAAACACCCAATAACAGCCACCCAGTTCAATAATTGCTACAGTGCAGCAGTCAACAGTAAGAAAGCAAATCATTGTCACGGAATGCACTGCATCATCCATGCACTGGAATGGACTGGACCATCAAATATACTTCCCAGGCCATAATTTGATATATTTGAAAGTTTAGTT
gi|3 : TAATTTGATATATT----TGAAAGTTTAGTTTATGAGTATCATTTAAAAAA--CATCTTATTGCAAAAATCTGATTCTTTACTGCTATTCAGAtatgagtatcatttaaaaaacatcttattgcaaaaatctgattctttactgctattcagagcgtatcttaaatatttaccatttggaactagtcaaactattttaggtaggcagtctagagagtcttagagggttaatttaaaactttatgactgtggtcctaaaacacatgagtggaattctatttattccacgaaagacatccaaccaattgtaaccaattgtaataatatcaaataatgttaatcaaacattattaattttattcagaagtcaaaattgatatttttggaattgattagctctgtaatcagtagttacattatgtttagtattatatcagtcagtcacttattggtcattagaagggatagccct
gi|3 : ataatccagtgtttcatcggaacacaacctcccgaggtcattaggactgtgagagtcaaacacccaataacagccacccagttcaataattgctacagtgcagcagtcaacagtaagaaagcaaatcattgtcacggaatgcactgcatcatccatgcactggaatggactggaccatcaaatatacttcccaggccaAAAAATCTGATTCTTTACTGCTATTCAGAGCGTATCTTAAATATTTACCATTTGGAACTAGTCAAACTATTTTAGGTAG-GCA-GTCTAGAGAGTCT--TAGAGG-GTTAATTTAAAAgcgtatcttaaatatttaccatttggaactagtcaaactattttaggtaggcagtctagagagtcttagagggttaatttaaaactttatgactgtggtcctaaaacacatgagtggaattctatttattccacgaaagacatccaaccaattgtaaccaattgtaataatatcaaataatgttaatcaaacattattaattttattcagaagtcaaaattgatatttttggaattgattagctctgtaatcagtagttacattatgtttagtattatatcagtcagtcacttattggtcattagaagggatagccct
gi|3 : ataatccagtgtttcatcggaacacaacctcccgaggtcattaggactgtgagagtcaaacacccaataacagccacccagttcaataattgctacagtgcagcagtcaacagtaagaaagcaaatcattgtcacggaatgcactgcatcatccatgcactggaatggactggaccatcaaatatacttcccaggccataatttgatatatttgaaagtttagtttatgagtatcatttaaaaaacatcttattgcGT-AATAATATCAAATAATGTT----AATCAAACATTATTAATTTTATTCAGAAGTCAAAATTGATATTTTTGGAATTGATTAGCTCTGTAATCAGTAGTTACATTATGTTTAGTATTATATCAGTCAGTCACTTAT--TGGTCATTAGAAGGGATAGCCCctttatgactgtggtcctaaaacacatgagtggaattctatttattccacgaaagacatccaaccaattgtaaccaattgtaataatatcaaataatgttaatcaaacattattaattttattcagaagtcaaaattgatatttttggaattgattagctctgtaatcagtagttacattatgtttagtattatatcagtcagtcacttattggtcattagaagggatagccct
gi|4 : ataatccagtgtttcatcggaacacaacctcccgaggtcattaggactgtgagagtcaaacacccaataacagccacccagttcaataattgctacagtgcagcagtcaacagtaagaaagcaaatcattgtcacggaatgcactgcatcatccatgcactggaatggactggaccatcaaatatacttcccaggccataatttgatatatttgaaagtttagtttatgagtatcatttaaaaaacatcttattgcaaaaatctgattctttactgctattcagagcgtatcttaaatatttaccatttggaactagtcaaactattttaggtaggcagtctagagagtcttagagggttaatttaaaactttatgactgtggtcctaaaacacatgagtggaattctatttattccacgaaagacatccaaccaattgtaaccaattTAATCTTGGTGCCGTATTCATAAAGCTTCTTAGATTTTCGCTAAGAAAATATCTTAACTCAGTAATATTTTCTAAGCTAAG-ATGAAAACATTTTTTTAACTTA------AGTGGTATTCATAAAACCACTAAGA-CAAATCTTAGTTAAGA-AAACGTATAAGAAAATAATAATTCAT-AGA-TCAAATATTT---GATCTT-AA--AAAA--ATCTTAACTCGGTAACTAAGGAAGTCTGGGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGTTTGGAAAATACCTTCTATACTATAATCTACTTTAAATGAGTATTACAATGTCAATGTGGTA--TGAGCTTGTGTGTAGTGTCACTCAACTCGTTTTGTGTTTATGTGTTTAGATATATATA-TATATGTTACTGCAACAGTGTA-C-TTTG-ATGAGAAACTGTGTATAt
gi|5 : aaatgttaatttgtttaacaaaaattgttttacatgAAATAATGA-GTCAATCGGGTCAATACACTTAATGGAAAAAGACCAGGAGCCGTATTCCTATAGCTTCTTAGAGTTTCGCTTAGAAAATATCTTAGCTCAGTAATATTTTCTTAGCTAAG-ATAAAAACAATTTTTTAACTTA------AGTGGTATTCATAAAACCAATAAGA-CAAATCTGAGTTAAGA-AAACGTTTAAGAAAATAATAATTCTG-AGA-CCAAATATCT---CATCTTTAA--AAAA--ATCTTAACTCGGTAAATAAGGAAGTCTGGTATT-TCCAAATCTCAAAACAGTATCAGAAGTGATAGTTTGGAAAATACATTCTATACTATAATCTACTTTAAATGAGTATTGAAATGTCAATGTGGTATGTGAGCGTGTGTGTA--GT----------G-TTTGTGTATATATACCTATGTGTGTGTA-GG-GTATAGATATGAAT---TG-A-TATATAT-ATAAATTATATATATATTA
gi|6 : CTTAGACAATACCTTAACTCAATTATATTTTA--AGCTAAG-ATGAAAATAATTTCCTAA--TA------A-TCACATTCAGTGAACCACAAAAA-C--ATCGTAGCTAAAATAAA
gi|6 : aatagccagtaattgttcggaccatgtagtttagtttaaacTAAATTAAAA--AGTTTAACTAGTTAATTATGGATGTCGGGGATTGTCCAT-TCTTAAA-TGGTATCGGAAAAGACAGTTTGTAAAATATTGTTTATttaaaaagtttaactagttaattatggatgtcggggattgtccattcttaaatggtatcggaaaagacagtttgtaaaatattgtttat
gi|7 : aatagccagtaattgttcggaccatgtagtttagtttaaaccttagacaataccttaactcaattatattttaagctaagatgaaaataatttcctaataatcacattcagtgaaccacaaaaacatcgtagctaaaaTACTA-AAC--TGGAAATGTAAAATCAAATACAGGGGAACGCAATACTCGTGAACTTTATTTAGAAAAACAATGA
gi|7 : TGAATTACTTTAAAAATGTCCCTATCAAAATAGTGTTATGATTATAAATGATATTGCCGCTGTTTTCTACCATAATATAAACCGCTGCGnnnnnnnnnnnnnnnnnnnnnnnnnaataattagtctatcttaatgtattcaaaagttttcgcagtgaattactttaaaaatgtccctatcaaaatagtgttatgattataaatgatattgccgctgttttctaccataatataaaccgctgcg
gi|8 : tactaaactggaaatgtaaaatcaaatacaggggaacgcaatactcgtgaactttatttagaaaaacaatgannnnnnnnnnnnnnnnnnnnnnnnnaataattagtctatcttaatgtattcaaaagttttcgcagACTA-AAC--TGGAAATGTAAAATCAAATACAGGGGAACGCAATACTCGTGAACTTTATTTAGAAAAACAATGAATATAT
gi|8 : TGAATTACTTTAAAAATGTCCCTATCAAAATAGTGTTATGATTATAAATGATATTGCCGCTGTTTTCTACCATAATATAAACCGCTGCGatatatatatatataaataattagtctatcttaatgtattcaaaagttttcgcagtgaattactttaaaaatgtccctatcaaaatagtgttatgattataaatgatattgccgctgttttctaccataatataaaccgctgcg
gi|9 : actaaactggaaatgtaaaatcaaatacaggggaacgcaatactcgtgaactttatttagaaaaacaatgaatatatatatatatatatataaataattagtctatcttaatgtattcaaaagttttcgcagCTAGTTTTTAATAGTT-TTTATAGCGTAC---AATTATGTCCCA--TGGAG-TTGTCG--CTATTTT-GTTTGTACACGCCATGACAA-CG--TAGAGTCGATAA---GAAATAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ATAGTCCGCAGTTATTTCATGGAGTTGTCGCTATTTTGTCATGGCAACGTGTCGTTAAGAAATAAGTTATAAAGTTGTTTGTTTTAAAGGATCAA
Alignments
lowQualScore : 11 1 222 1 66666666666666666666666 22222 222 1 222222 222 11 1 1 1 1 22222 1 1111 1 2222 1 11 222 11 1 22222 111 1 222222 222 111111 111 4444444444 1 1 222 1 1 11 11 1 1 3333 1 1 11
lowQualScore : 88 1 1 2 5 111 5 1 1 1 1 1 44444444444444444444444 1 1 1 1 1 55555 1 1 111 5 444444 111 1 1 88 22 1 1 5 1 1 3 1 6 7 6 88 7 1 3 3 88888 0 0000 5 3333 5 1 88 111 88 1 1 1 1 1 5 77777 999 1 1 5 888888 1 111 0 0 33 5 1 4 666666 5 5 6 6 000 3 77 99 3 6 3 2 3333333333 0 0 3 1 1 2 22 55 111 0 3 0 1 5 88 0 88 0 0 2222 3 3 8 11 0 0 0
lowQualScore : .. . . . . ... . . . . . . ....................... . . . . . ..... . . ... . ...... ... . . .. .. . . . . . . . . . . .. . . . . ..... . .... . .... . . .. ... .. . . . . . . ..... ... . . . ...... . ... . . .. . . . ...... . . . . ... . .. .. . . . . .......... . . . . . . .. .. ... . . . . . .. . .. . . .... . . . .. . . .
lowQualScore : 00 0 0 5 0 000 0 0 0 0 0 0 55555555555555555555555 0 0 0 0 0 55555 0 0 000 5 555555 000 0 0 00 00 0 0 5 0 0 3 0 7 3 7 00 3 0 3 3 33333 0 0000 5 5555 5 0 55 000 00 0 0 0 0 0 5 00000 555 0 0 5 555555 0 000 2 3 00 7 0 3 444444 7 7 7 7 000 4 99 22 5 7 2 5 8888888888 0 0 2 0 2 0 22 55 222 2 2 0 0 5 55 7 33 3 7 3333 3 3 0 00 8 8 8
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATCCAGTGTNTCATCGGAACACAACNTCCCGAGGTCATTAGGACTNTNAGAGTCAAANACNCGATAACAGCCACCCAGTTCNATAATTGCTACAGTGCAGCAGTCAACAGTAAGAAAGCAAATCATTNTCANGGAATNCANTGCATCATCCATGCACTGGAATGGANTGGACCATNAAATATACTTCCCANGCCATAATTTGATATATCTGAAAGTTTAGTTGACCAAAAACTTTAGTTTGATATATTACTTCGAAAGTTCAGTTTATGNGTATCATTTAAAANAGTCATCTTATTGCGAAAATNNGNTTCTTTGCTNCTGTTCAGACTAAATAAAAAATCTGGTTCTTNACNGTT-TTCANAGCGTACCTTAATTATTTACCATTTGGAACTTGTCGAACTATTTTAGNTTG-GCA-GTCTTGACAG-CG--TAGAGT-GATAATTTGAAATAATGTTTCAGAATCAAACATNATTAACTTCATTCAGAAGCCAAAATTGANGTNTTTGGAATTGATTAGCTCTNTAACCAGTAGTNACANTGTGTTTAGTATTATATCAGTCAGTCACTTATAANGGTCNTTAGAAGGGATAGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATNATGATGTCAATCGGGTCAATNCACTTAATGGGAATAGTCCTGGGGCCGTATTCATAAAGCTTCTTAGATTTTCGCTAAGAAAATATCTTAACTCAGTAATATTTTCTTAGCTAAG-ATGAAAACAANTTCTTAACTTA------AGTGGTATTCATAAAACCACTAAGA-CAAATCTTAGCTAAGA-AAACGTATAAGAAAATAATAATTCTT-AGA-TCAAATATTT---CATCTTAAA--AAAA--ATCTTAACTCGGTAACTAAGGAAGTCTGGGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGTTTGGAAAATACCTTCTATACTATAATCTACTTTAAATGAGTATTGAAATGTCAATGTGGTATGTGAGCTTGTGTGTAGTGT----------G-TTTGTGTATATATACCTATGTGTGTGTA-GGTATNTAGCTGCGNTTGTGTG-T-TGTGTAT-ANAAACTATGTACATGTTAGTCACTCAACTCGTTTTGTGTTTATGTGTTTAGATATATATATGTTACTACAACAGTGTACTTCGATGAGAAAC--TGTGTATAGTCTTCTTCCCCTTCTCCTCTTCTTTACTTCTTATTCTTCTCC-T-CTTTTT-TC-GTATTATACTA-AAC--TGGAAATGTAAAATCAAATACAGGGGAACGCGATACTCGTGAACTTTATTTAGAAAAACAATGAATAGATGAATTACTTTAAAAATGTCCCTATCAAAATAGTGTTATGATTATAAATGATATTGCCGCTGTTTTCTACCATAATATAAACCGCTGCG
Reference ( family-589 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATCCAGTGTNTCATCGGAACACAACNTCCCGAGGTCATTAGGACTNTNAGAGTCAAANACNCGATAACAGCCACCCAGTTCNATAATTGCTACAGTGCAGCAGTCAACAGTAAGAAAGCAAATCATTNTCANGGAATNCANTGCATCATCCATGCACTGGAATGGANTGGACCATNAAATATACTTCCCANGCCATAATTTGATATATCTGAAAGTTTAGTTGACCAAAAACTTTAGTTTGATATATTACTTCGAAAGTTCAGTTTATGNGTATCATTTAAAANAGTCATCTTATTGCGAAAATNNGNTTCTTTGCTNCTGTTCAGACTAAATAAAAAATCTGGTTCTTNACNGTT-TTCANAGCGTACCTTAATTATTTACCATTTGGAACTTGTCGAACTATTTTAGNTTG-GCA-GTCTTGACAG-CG--TAGAGT-GATAATTTGAAATAATGTTTCAGAATCAAACATNATTAACTTCATTCAGAAGCCAAAATTGANGTNTTTGGAATTGATTAGCTCTNTAACCAGTAGTNACANTGTGTTTAGTATTATATCAGTCAGTCACTTATAANGGTCNTTAGAAGGGATAGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATNATGATGTCAATCGGGTCAATNCACTTAATGGGAATAGTCCTGGGGCCGTATTCATAAAGCTTCTTAGATTTTCGCTAAGAAAATATCTTAACTCAGTAATATTTTCTTAGCTAAG-ATGAAAACAANTTCTTAACTTA------AGTGGTATTCATAAAACCACTAAGA-CAAATCTTAGCTAAGA-AAACGTATAAGAAAATAATAATTCTT-AGA-TCAAATATTT---CATCTTAAA--AAAA--ATCTTAACTCGGTAACTAAGGAAGTCTGGGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGTTTGGAAAATACCTTCTATACTATAATCTACTTTAAATGAGTATTGAAATGTCAATGTGGTATGTGAGCTTGTGTGTAGTGT----------G-TTTGTGTATATATACCTATGTGTGTGTA-GGTATNTAGCTGCGNTTGTGTG-T-TGTGTAT-ANAAACTATGTACATGTTAGTCACTCAACTCGTTTTGTGTTTATGTGTTTAGATATATATATGTTACTACAACAGTGTACTTCGATGAGAAAC--TGTGTATAGTCTTCTTCCCCTTCTCCTCTTCTTTACTTCTTATTCTTCTCC-T-CTTTTT-TC-GTATTATACTA-AAC--TGGAAATGTAAAATCAAATACAGGGGAACGCGATACTCGTGAACTTTATTTAGAAAAACAATGAATAGATGAATTACTTTAAAAATGTCCCTATCAAAATAGTGTTATGATTATAAATGATATTGCCGCTGTTTTCTACCATAATATAAACCGCTGCG
gi|1 : ATAATCC--TATATCATCAGAACACAACATCCAAAGGT-AT---GA-TCTCAAAGTCAAAGACGTGATAACAACTATCTAGTTTCATAATTGCTACA------------AC---------GCAAATCATTTTCAGGGAATTTAATGCATCATCCATGCACTGGAATGGAAT-----ATAAAATATATTTCCTATACCATAATTTAATATATCTGAAA---TAGTTGACCAAAAACTTTAGTTTGA-ATATTACTTCCAAA---CAGTTTATGTGTATCATTTAAAACAGTCATCTTATTGTGAAAATAAATTTCTTTGTTTTTGTTTAAACTAAATAAAAAA---GGTTCTTCACGGTT-TTCACAATGTACCTTTATTATTTACCATTTGGAACTTGTCAAACTATTTTAGATTG-GCA-GTCTTAACAG-GGACCAGAAT-GATAATTGGAAATAA-GTTTCAGAATC-AATATAA--AACTTCAT---GA--CCAAAATTGAAGTATTTGGAATTGATTAGCTCTTTAACCAATAGTAACAGTGTGTTTAATATTA-ATCAGTC--T--CTTATAAGAGTCTTTAAAAGGGATAGCCC
gi|1 : cattgttccactttcaagcataacttttaaacatgtgacagtgtgctagtcaAAATTATGATGTCA------TCAATTCA---AATAAGAATAGTTCTGGGACCGTATTCATAAAGCTTCTTAGATTTTCGCTAAGAAAATATCTTAACTCAGTAATATTTTCTTAGTTAAC-ATGAAAACAAATTTTTAACTTATTAATAAGTGATATTCATAAAACCACTAAGA-CAAATCTTAGTTAAGA-AAACGTATAAGAAAATAATAATTCTT-AGA-TCAAATATTT---TATCTTAAA--AAAA--ATCTTAACTCGGTAACTAAGGAAGTCTGGGATT-TCCAAATCTTAAAATAGTATCGGAAGAGATAGTTTGGAAAATACCTTCTATGCTATAAGCTGCTTTAAATGAGTATTGAAATGTCAATGTGGTGTGTGAGCTTGTGTGTAGTGT----------G-TTTGTGTATATATACCTATATGTGTGTA-GGTATCTAGCTGTGTTTGGGTGTT-TGTGTAT-AAAAACTATGTACATGTTAGTCACTCAACTCGTTTTGTGTTTATGTG-TTAG--ATATATATGTTACTACAGCAGTGTACTTTGATGAGAAAC--TGTGTATAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA---------T-TC-GTATTATACTA-AAC--TGGAAATGTAAAATCAAATACAGTGAAACGCGATACTCGTGAACTTTATTTAGAAAAACAATGAATAGATGAATTACTTTAAAAATGTCCCTATCAAAATAGTGTTATGATTATAAATGATATTGCCGCTGTTTTCTACCATAATATAAACCGCTGCGagtctgtgatacatttatttagactattactctgaattgataattcagatacatcgagatacaaattacatttttgctattaaaaaacctacctgtgaaaaaaatatcagtgtgtaaggatttatgaaaaagacaactgaataacagctgcaatatgacatacaaaagtcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataagagaaataattcaattgatattcaatgaagacataatgccttgttgaaagagggtctaaacgaggctatgaaaatttcacaaaattattcaaagtggttacaaatttgtgacagacatgaaattataaacattgtcttttgccaatttcagtacatttaagtgatttgttttttcatcattgaagtaagtatttggaacttgcgcaaaacatatcattgaatgataaatgtagctaaaatatttgcaatggtttgcatggtaatgtgagatggtttatacaggctggacactgtattgtcatagcattaacaaatgggtgagcagacatgcagaaaaatggcaatttcatagtaaaaaattatttagatggagattaaatgaaggggaaacatggaaattgagtatataaattggtgtcattttttcccttttccagaatttagactgattaaacaaaggtttgatagacaatatttcatattctggccagattcttatcaagttattcatcacctttaaggttccagtattctcttgcagagaaattctatgtaaaactatactgttatttgtttccaagtcaatgaaccaacagttatatttataaaataagatcaggctaaaacttactataattagcccctaaaacccatgtatctgctctggtaaacagtgtgaaaccaatacagatctctttcatttggtgcaattgggattgagacaaattttaccaaatgattataactttatattttcacaaaggctccagtttgggaaacagtgagtttcaattgaaaaatataaacaaaagctataaatttcacataatcaatgacagttatatctaaactatctaaactgtctctaacaactcccaaattatgtacaaatatttaaaaaaatgacaatgacatcacaaaatgaaattatgatgtcatcaattcaaataagaatagttctgggaccgtattcataaagcttcttagattttcgctaagaaaatatcttaactcagtaatattttcttagttaacatgaaaacaaatttttaacttattaataagtgatattcataaaaccactaagacaaatcttagttaagaaaacgtataagaaaataataattcttagatcaaatattttatcttaaaaaaaatcttaactcggtaactaaggaagtctgggatttccaaatcttaaaatagtatcggaagagatagtttggaaaataccttctatgctataagctgctttaaatgagtattgaaatgtcaatgtggtgtgtgagcttgtgtgtagtgtgtttgtgtatatatacctatatgtgtgtaggtatctagctgtgtttgggtgtttgtgtataaaaactatgtacatgttagtcactcaactcgttttgtgtttatgtgttagatatatatgttactacagcagtgtactttgatgagaaactgtgtatagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattcgtattatactaaactggaaatgtaaaatcaaatacagtgaaacgcgatactcgtgaactttatttagaaaaacaatgaatagatgaattactttaaaaatgtccctatcaaaatagtgttatgattataaatgatattgccgctgttttctaccataatataaaccgctgcgg
gi|10 : cattgttccactttcaagcataacttttaaacatgtgacagtgtgctagtcaataatcctatatcatcagaacacaacatccaaaggtatgatctcaaagtcaaagacgtgataacaactatctagtttcataattgctacaacgcaaatcattttcagggaatttaatgcatcatccatgcactggaatggaatataaaatatatttcctataccataatttaatatatctgaaatagttgaccaaaaactttagtttgaatattacttccaaacagtttatgtgtatcatttaaaacagtcatcttattgtgaaaataaatttctttgtttttgtttaaactaaataaaaaaggttcttcacggttttcacaatgtacctttattatttaccatttggaacttgtcaaactattttagattggcagtcttaacagggaccagaatgataattggaaataagtttcagaatcaatataaaacttcatgaccaaaattgaagtatttggaattgattagctctttaaccaatagtaacagtgtgtttaatattaatcagtctcttataagagtctttaaaagggatagcccagtctgtgatacatttatttagactattactctgaattgataattcagatacatcgagatacaaattacatttttgctattaaaaaacctacctgtgaaaaaaatatcagtgtgtaaggatttatgaaaaagacaactgaataacagctgcaatatgacatacaaaagtcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataagagaaataattcaattgatattcaatgaagacataatgccttgttgaaagagggtctaaacgaggctatgaaaatttcacaaaattattcaaagtggttacaaatttgtgacagacatgaaattataaacattgtcttttgccaatttcagtacatttaagtgatttgttttttcatcattgaagtaagtatttggaacttgcgcaaaacatatcattgaatgataaatgtagctaaaatatttgcaatggtttgcatggtaatgtgagatggtttatacaggctggacactgtattgtcatagcattaacaaatgggtgagcagacatgcagaaaaatggcaatttcatagtaaaaaattatttagatggagattaaatgaaggggaaacatggaaattgagtatataaattggtgtcattttttcccttttccagaatttagactgattaaacaaaggtttgatagacaatatttcatattctggccagattcttatcaagttattcatcacctttaaggttccagtattctcttgcagagaaattctatgtaaaactatactgttatttgtttccaagtcaatgaaccaacagttatatttataaaataagatcaggctaaaacttactataattagcccctaaaacccatgtatctgctctggtaaacagtgtgaaaccaatacagatctctttcatttggtgcaattgggattgagacaaattttaccaaatgattataactttatattttcacaaaggctccagtttgggaaacagtgagtttcaattgaaaaatataaacaaaagctataaatttcacataatcaatgacagttatatctaaactatctaaactgtctctaacaactcccaaattatgtacaaatatttaaaaaaatgacaatgacatcacaaaatgACTTTATTTAGAAAAACAATG-ATAGATg
gi|10 : gtTGAATTACTTTAAAAATGTCACTATCAAAATAGTGTTATGATTATAAATGATATTGCCGCAGTTTTCTACCATAATATAAACCatatataaataattaatgtatctaaatgtattcaaaagtattcgcagtgaattactttaaaaatgtcactatcaaaatagtgttatgattataaatgatattgccgcagttttctaccataatataaacctc
gi|11 : gtactttatttagaaaaacaatgatagatatatataaataattaatgtatctaaatgtattcaaaagtattcgcagCTAGGATTATATTCATAAAGCCTCTTAGATTGTTTCCAA--------TTTAGCT---------------AACTAAACGTAAAAACAAGCACTCAA-TTG------AGTTGTATTCATAAAACAACTGAGAACAAATCTGAGCT----------TATAAGAAAATTAAAATTGTTAAGAGTCAGG-ATTTAAGTATCTTCAA--tc
gi|12 : TGAATTACCTTAAAAATGTCCTTATTAATATAGTGTAATGGTTATAAATAATATTTCTGCTGTTTTCTACCATAATATAAAACGGTGCG
gi|13 : ttgatatatatataaattatatatatattaataattattgtaaatgtattcaaaagtttttgcagATTTGTTACTACAACATTATATTTTGGTGAGAAGCTATATGTAAAGTTTTCTTCTTCTT-TCTTCTTCTTT-CTTTTTATTCTTCTCC-TACTTTTTCTT-GAATAACAATA-AACATTGAACA---AAAATTGAAC-CGGGGG
gi|14 : TCAATGATATTTTCTTAGCTAAG-ATGAAAACAAGTTCTTAACTCG------AGTGGCATTTATAAAACCACTGAGA-AATATTTT-GCTAAGA-TTGAGTTTAAGAAAATAATCA---TT-AAG-TAAAATA------CATATTAA
gi|15 : TATTT---CATAATAAA--AAAATCATCT--ACTCTGTATCTA--GAAGTGAGTGATT-TCGAAATCTTCAAATAGTATTTGAGGTGATAATTTGGAAACTGCCTTCTGTAtgtt
gi|2 : CCATATTCATAAAGCTCCTTAGATTTTCGCTAAGAAAATATCTTAACTCAGTAATATTTTCTTAGTCAAG-ATGAAAACAAATTTTTAACTTA------AGTGGTATTCATAAAACCACTAAGA-CAAATCTTAGTTAAGA-AAACGTATAAGAAAATAATAATTCTT-AGA-TCAAATATTT---CATCTTAAA--AAAA--ACCTTAACTCGGTAACTAAGGAAATCTGGGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGTTTTGAAAATACCTTCTATACTATAATCTACTTTAACTGAGTAATGAAATGTCAATGTGGTATGTGAGCTTGTGTGTAGTGT----------G-TTTGTGTATATATACCTATGTGTGTGTAGGGTATCTGGCTGTGTTTGTGTG-TATGTGTAT-GTAAACTATGTACATGTTAGTCACTCAACTCGTTTTGTGTTTATGTATTTAGATATATATATGTTACTACAACAGTGTACTTCGATGAGAAAC--TGTGTATAGTCTTCTTCCCCTTCTTCTCTTTTTTACTTCTTATTCTTCTCCTT-CTTTTT-TCAGTATTATACTACAAC--TGGAAATGTAAAATCAAACACAGGGGAACGCGATACTCGTGAACTTTATATAGAAAAACAATGAATAGATaa
gi|2 : TGAATTACTTTAAAAATGTCCCTATTAAAATAGTGAAATGATTATAAATGATATTGCCACTGTTTTCTGCCATAATATAAACCGCTGTGatatataaatatattagtgtatctaaatgtattcaaaagttttcgcagtgaattactttaaaaatgtccctattaaaatagtgaaatgattataaatgatattgccactgttttctgccataatataaaccgctgtg
gi|3 : ccatattcataaagctccttagattttcgctaagaaaatatcttaactcagtaatattttcttagtcaagatgaaaacaaatttttaacttaagtggtattcataaaaccactaagacaaatcttagttaagaaaacgtataagaaaataataattcttagatcaaatatttcatcttaaaaaaaaccttaactcggtaactaaggaaatctgggatttccaaatcttaaaatagtatcggaagtgatagttttgaaaataccttctatactataatctactttaactgagtaatgaaatgtcaatgtggtatgtgagcttgtgtgtagtgtgtttgtgtatatatacctatgtgtgtgtagggtatctggctgtgtttgtgtgtatgtgtatgtaaactatgtacatgttagtcactcaactcgttttgtgtttatgtatttagatatatatatgttactacaacagtgtacttcgatgagaaactgtgtatagtcttcttccccttcttctcttttttacttcttattcttctccttcttttttcagtattatactacaactggaaatgtaaaatcaaacacaggggaacgcgatactcgtgaactttatatagaaaaacaatgaatagatatatataaatatattagtgtatctaaatgtattcaaaagttttcgcagATAATCCAGTGTTTCATCGGAACACAACCTCCCGAGGTCATTAGGACTGTGAGAGTCAAACACCCAATAACAGCCACCCAGTTCAATAATTGCTACAGTGCAGCAGTCAACAGTAAGAAAGCAAATCATTGTCACGGAATGCACTGCATCATCCATGCACTGGAATGGACTGGACCATCAAATATACTTCCCAGGCCATAATTTGATATATTTGAAAGTTTAGTT
gi|3 : TAATTTGATATATT----TGAAAGTTTAGTTTATGAGTATCATTTAAAAAA--CATCTTATTGCAAAAATCTGATTCTTTACTGCTATTCAGAtatgagtatcatttaaaaaacatcttattgcaaaaatctgattctttactgctattcagagcgtatcttaaatatttaccatttggaactagtcaaactattttaggtaggcagtctagagagtcttagagggttaatttaaaactttatgactgtggtcctaaaacacatgagtggaattctatttattccacgaaagacatccaaccaattgtaaccaattgtaataatatcaaataatgttaatcaaacattattaattttattcagaagtcaaaattgatatttttggaattgattagctctgtaatcagtagttacattatgtttagtattatatcagtcagtcacttattggtcattagaagggatagccct
gi|3 : ataatccagtgtttcatcggaacacaacctcccgaggtcattaggactgtgagagtcaaacacccaataacagccacccagttcaataattgctacagtgcagcagtcaacagtaagaaagcaaatcattgtcacggaatgcactgcatcatccatgcactggaatggactggaccatcaaatatacttcccaggccaAAAAATCTGATTCTTTACTGCTATTCAGAGCGTATCTTAAATATTTACCATTTGGAACTAGTCAAACTATTTTAGGTAG-GCA-GTCTAGAGAGTCT--TAGAGG-GTTAATTTAAAAgcgtatcttaaatatttaccatttggaactagtcaaactattttaggtaggcagtctagagagtcttagagggttaatttaaaactttatgactgtggtcctaaaacacatgagtggaattctatttattccacgaaagacatccaaccaattgtaaccaattgtaataatatcaaataatgttaatcaaacattattaattttattcagaagtcaaaattgatatttttggaattgattagctctgtaatcagtagttacattatgtttagtattatatcagtcagtcacttattggtcattagaagggatagccct
gi|3 : ataatccagtgtttcatcggaacacaacctcccgaggtcattaggactgtgagagtcaaacacccaataacagccacccagttcaataattgctacagtgcagcagtcaacagtaagaaagcaaatcattgtcacggaatgcactgcatcatccatgcactggaatggactggaccatcaaatatacttcccaggccataatttgatatatttgaaagtttagtttatgagtatcatttaaaaaacatcttattgcGT-AATAATATCAAATAATGTT----AATCAAACATTATTAATTTTATTCAGAAGTCAAAATTGATATTTTTGGAATTGATTAGCTCTGTAATCAGTAGTTACATTATGTTTAGTATTATATCAGTCAGTCACTTAT--TGGTCATTAGAAGGGATAGCCCctttatgactgtggtcctaaaacacatgagtggaattctatttattccacgaaagacatccaaccaattgtaaccaattgtaataatatcaaataatgttaatcaaacattattaattttattcagaagtcaaaattgatatttttggaattgattagctctgtaatcagtagttacattatgtttagtattatatcagtcagtcacttattggtcattagaagggatagccct
gi|4 : ataatccagtgtttcatcggaacacaacctcccgaggtcattaggactgtgagagtcaaacacccaataacagccacccagttcaataattgctacagtgcagcagtcaacagtaagaaagcaaatcattgtcacggaatgcactgcatcatccatgcactggaatggactggaccatcaaatatacttcccaggccataatttgatatatttgaaagtttagtttatgagtatcatttaaaaaacatcttattgcaaaaatctgattctttactgctattcagagcgtatcttaaatatttaccatttggaactagtcaaactattttaggtaggcagtctagagagtcttagagggttaatttaaaactttatgactgtggtcctaaaacacatgagtggaattctatttattccacgaaagacatccaaccaattgtaaccaattTAATCTTGGTGCCGTATTCATAAAGCTTCTTAGATTTTCGCTAAGAAAATATCTTAACTCAGTAATATTTTCTAAGCTAAG-ATGAAAACATTTTTTTAACTTA------AGTGGTATTCATAAAACCACTAAGA-CAAATCTTAGTTAAGA-AAACGTATAAGAAAATAATAATTCAT-AGA-TCAAATATTT---GATCTT-AA--AAAA--ATCTTAACTCGGTAACTAAGGAAGTCTGGGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGTTTGGAAAATACCTTCTATACTATAATCTACTTTAAATGAGTATTACAATGTCAATGTGGTA--TGAGCTTGTGTGTAGTGTCACTCAACTCGTTTTGTGTTTATGTGTTTAGATATATATA-TATATGTTACTGCAACAGTGTA-C-TTTG-ATGAGAAACTGTGTATAt
gi|5 : aaatgttaatttgtttaacaaaaattgttttacatgAAATAATGA-GTCAATCGGGTCAATACACTTAATGGAAAAAGACCAGGAGCCGTATTCCTATAGCTTCTTAGAGTTTCGCTTAGAAAATATCTTAGCTCAGTAATATTTTCTTAGCTAAG-ATAAAAACAATTTTTTAACTTA------AGTGGTATTCATAAAACCAATAAGA-CAAATCTGAGTTAAGA-AAACGTTTAAGAAAATAATAATTCTG-AGA-CCAAATATCT---CATCTTTAA--AAAA--ATCTTAACTCGGTAAATAAGGAAGTCTGGTATT-TCCAAATCTCAAAACAGTATCAGAAGTGATAGTTTGGAAAATACATTCTATACTATAATCTACTTTAAATGAGTATTGAAATGTCAATGTGGTATGTGAGCGTGTGTGTA--GT----------G-TTTGTGTATATATACCTATGTGTGTGTA-GG-GTATAGATATGAAT---TG-A-TATATAT-ATAAATTATATATATATTA
gi|6 : CTTAGACAATACCTTAACTCAATTATATTTTA--AGCTAAG-ATGAAAATAATTTCCTAA--TA------A-TCACATTCAGTGAACCACAAAAA-C--ATCGTAGCTAAAATAAA
gi|6 : aatagccagtaattgttcggaccatgtagtttagtttaaacTAAATTAAAA--AGTTTAACTAGTTAATTATGGATGTCGGGGATTGTCCAT-TCTTAAA-TGGTATCGGAAAAGACAGTTTGTAAAATATTGTTTATttaaaaagtttaactagttaattatggatgtcggggattgtccattcttaaatggtatcggaaaagacagtttgtaaaatattgtttat
gi|7 : aatagccagtaattgttcggaccatgtagtttagtttaaaccttagacaataccttaactcaattatattttaagctaagatgaaaataatttcctaataatcacattcagtgaaccacaaaaacatcgtagctaaaaTACTA-AAC--TGGAAATGTAAAATCAAATACAGGGGAACGCAATACTCGTGAACTTTATTTAGAAAAACAATGA
gi|7 : TGAATTACTTTAAAAATGTCCCTATCAAAATAGTGTTATGATTATAAATGATATTGCCGCTGTTTTCTACCATAATATAAACCGCTGCGnnnnnnnnnnnnnnnnnnnnnnnnnaataattagtctatcttaatgtattcaaaagttttcgcagtgaattactttaaaaatgtccctatcaaaatagtgttatgattataaatgatattgccgctgttttctaccataatataaaccgctgcg
gi|8 : tactaaactggaaatgtaaaatcaaatacaggggaacgcaatactcgtgaactttatttagaaaaacaatgannnnnnnnnnnnnnnnnnnnnnnnnaataattagtctatcttaatgtattcaaaagttttcgcagACTA-AAC--TGGAAATGTAAAATCAAATACAGGGGAACGCAATACTCGTGAACTTTATTTAGAAAAACAATGAATATAT
gi|8 : TGAATTACTTTAAAAATGTCCCTATCAAAATAGTGTTATGATTATAAATGATATTGCCGCTGTTTTCTACCATAATATAAACCGCTGCGatatatatatatataaataattagtctatcttaatgtattcaaaagttttcgcagtgaattactttaaaaatgtccctatcaaaatagtgttatgattataaatgatattgccgctgttttctaccataatataaaccgctgcg
gi|9 : actaaactggaaatgtaaaatcaaatacaggggaacgcaatactcgtgaactttatttagaaaaacaatgaatatatatatatatatatataaataattagtctatcttaatgtattcaaaagttttcgcagCTAGTTTTTAATAGTT-TTTATAGCGTAC---AATTATGTCCCA--TGGAG-TTGTCG--CTATTTT-GTTTGTACACGCCATGACAA-CG--TAGAGTCGATAA---GAAATAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ATAGTCCGCAGTTATTTCATGGAGTTGTCGCTATTTTGTCATGGCAACGTGTCGTTAAGAAATAAGTTATAAAGTTGTTTGTTTTAAAGGATCAA
Alignments
lowQualScore : 11 1 222 1 66666666666666666666666 22222 222 1 222222 222 11 1 1 1 1 22222 1 1111 1 2222 1 11 222 11 1 22222 111 1 222222 222 111111 111 4444444444 1 1 222 1 1 11 11 1 1 3333 1 1 11
lowQualScore : 88 1 1 2 5 111 5 1 1 1 1 1 44444444444444444444444 1 1 1 1 1 55555 1 1 111 5 444444 111 1 1 88 22 1 1 5 1 1 3 1 6 7 6 88 7 1 3 3 88888 0 0000 5 3333 5 1 88 111 88 1 1 1 1 1 5 77777 999 1 1 5 888888 1 111 0 0 33 5 1 4 666666 5 5 6 6 000 3 77 99 3 6 3 2 3333333333 0 0 3 1 1 2 22 55 111 0 3 0 1 5 88 0 88 0 0 2222 3 3 8 11 0 0 0
lowQualScore : .. . . . . ... . . . . . . ....................... . . . . . ..... . . ... . ...... ... . . .. .. . . . . . . . . . . .. . . . . ..... . .... . .... . . .. ... .. . . . . . . ..... ... . . . ...... . ... . . .. . . . ...... . . . . ... . .. .. . . . . .......... . . . . . . .. .. ... . . . . . .. . .. . . .... . . . .. . . .
lowQualScore : 00 0 0 5 0 000 0 0 0 0 0 0 55555555555555555555555 0 0 0 0 0 55555 0 0 000 5 555555 000 0 0 00 00 0 0 5 0 0 3 0 7 3 7 00 3 0 3 3 33333 0 0000 5 5555 5 0 55 000 00 0 0 0 0 0 5 00000 555 0 0 5 555555 0 000 2 3 00 7 0 3 444444 7 7 7 7 000 4 99 22 5 7 2 5 8888888888 0 0 2 0 2 0 22 55 222 2 2 0 0 5 55 7 33 3 7 3333 3 3 0 00 8 8 8
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATCCAGTGTNTCATCGGAACACAACNTCCCGAGGTCATTAGGACTNTNAGAGTCAAANACNCGATAACAGCCACCCAGTTCNATAATTGCTACAGTGCAGCAGTCAACAGTAAGAAAGCAAATCATTNTCANGGAATNCANTGCATCATCCATGCACTGGAATGGANTGGACCATNAAATATACTTCCCANGCCATAATTTGATATATCTGAAAGTTTAGTTGACCAAAAACTTTAGTTTGATATATTACTTCGAAAGTTCAGTTTATGNGTATCATTTAAAANAGTCATCTTATTGCGAAAATNNGNTTCTTTGCTNCTGTTCAGACTAAATAAAAAATCTGGTTCTTNACNGTT-TTCANAGCGTACCTTAATTATTTACCATTTGGAACTTGTCGAACTATTTTAGNTTG-GCA-GTCTTGACAG-CG--TAGAGT-GATAATTTGAAATAATGTTTCAGAATCAAACATNATTAACTTCATTCAGAAGCCAAAATTGANGTNTTTGGAATTGATTAGCTCTNTAACCAGTAGTNACANTGTGTTTAGTATTATATCAGTCAGTCACTTATAANGGTCNTTAGAAGGGATAGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATNATGATGTCAATCGGGTCAATNCACTTAATGGGAATAGTCCTGGGGCCGTATTCATAAAGCTTCTTAGATTTTCGCTAAGAAAATATCTTAACTCAGTAATATTTTCTTAGCTAAG-ATGAAAACAANTTCTTAACTTA------AGTGGTATTCATAAAACCACTAAGA-CAAATCTTAGCTAAGA-AAACGTATAAGAAAATAATAATTCTT-AGA-TCAAATATTT---CATCTTAAA--AAAA--ATCTTAACTCGGTAACTAAGGAAGTCTGGGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGTTTGGAAAATACCTTCTATACTATAATCTACTTTAAATGAGTATTGAAATGTCAATGTGGTATGTGAGCTTGTGTGTAGTGT----------G-TTTGTGTATATATACCTATGTGTGTGTA-GGTATNTAGCTGCGNTTGTGTG-T-TGTGTAT-ANAAACTATGTACATGTTAGTCACTCAACTCGTTTTGTGTTTATGTGTTTAGATATATATATGTTACTACAACAGTGTACTTCGATGAGAAAC--TGTGTATAGTCTTCTTCCCCTTCTCCTCTTCTTTACTTCTTATTCTTCTCC-T-CTTTTT-TC-GTATTATACTA-AAC--TGGAAATGTAAAATCAAATACAGGGGAACGCGATACTCGTGAACTTTATTTAGAAAAACAATGAATAGATGAATTACTTTAAAAATGTCCCTATCAAAATAGTGTTATGATTATAAATGATATTGCCGCTGTTTTCTACCATAATATAAACCGCTGCG
Reference ( family-589 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATCCAGTGTNTCATCGGAACACAACNTCCCGAGGTCATTAGGACTNTNAGAGTCAAANACNCGATAACAGCCACCCAGTTCNATAATTGCTACAGTGCAGCAGTCAACAGTAAGAAAGCAAATCATTNTCANGGAATNCANTGCATCATCCATGCACTGGAATGGANTGGACCATNAAATATACTTCCCANGCCATAATTTGATATATCTGAAAGTTTAGTTGACCAAAAACTTTAGTTTGATATATTACTTCGAAAGTTCAGTTTATGNGTATCATTTAAAANAGTCATCTTATTGCGAAAATNNGNTTCTTTGCTNCTGTTCAGACTAAATAAAAAATCTGGTTCTTNACNGTT-TTCANAGCGTACCTTAATTATTTACCATTTGGAACTTGTCGAACTATTTTAGNTTG-GCA-GTCTTGACAG-CG--TAGAGT-GATAATTTGAAATAATGTTTCAGAATCAAACATNATTAACTTCATTCAGAAGCCAAAATTGANGTNTTTGGAATTGATTAGCTCTNTAACCAGTAGTNACANTGTGTTTAGTATTATATCAGTCAGTCACTTATAANGGTCNTTAGAAGGGATAGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATNATGATGTCAATCGGGTCAATNCACTTAATGGGAATAGTCCTGGGGCCGTATTCATAAAGCTTCTTAGATTTTCGCTAAGAAAATATCTTAACTCAGTAATATTTTCTTAGCTAAG-ATGAAAACAANTTCTTAACTTA------AGTGGTATTCATAAAACCACTAAGA-CAAATCTTAGCTAAGA-AAACGTATAAGAAAATAATAATTCTT-AGA-TCAAATATTT---CATCTTAAA--AAAA--ATCTTAACTCGGTAACTAAGGAAGTCTGGGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGTTTGGAAAATACCTTCTATACTATAATCTACTTTAAATGAGTATTGAAATGTCAATGTGGTATGTGAGCTTGTGTGTAGTGT----------G-TTTGTGTATATATACCTATGTGTGTGTA-GGTATNTAGCTGCGNTTGTGTG-T-TGTGTAT-ANAAACTATGTACATGTTAGTCACTCAACTCGTTTTGTGTTTATGTGTTTAGATATATATATGTTACTACAACAGTGTACTTCGATGAGAAAC--TGTGTATAGTCTTCTTCCCCTTCTCCTCTTCTTTACTTCTTATTCTTCTCC-T-CTTTTT-TC-GTATTATACTA-AAC--TGGAAATGTAAAATCAAATACAGGGGAACGCGATACTCGTGAACTTTATTTAGAAAAACAATGAATAGATGAATTACTTTAAAAATGTCCCTATCAAAATAGTGTTATGATTATAAATGATATTGCCGCTGTTTTCTACCATAATATAAACCGCTGCG
gi|1 : ATAATCC--TATATCATCAGAACACAACATCCAAAGGT-AT---GA-TCTCAAAGTCAAAGACGTGATAACAACTATCTAGTTTCATAATTGCTACA------------AC---------GCAAATCATTTTCAGGGAATTTAATGCATCATCCATGCACTGGAATGGAAT-----ATAAAATATATTTCCTATACCATAATTTAATATATCTGAAA---TAGTTGACCAAAAACTTTAGTTTGA-ATATTACTTCCAAA---CAGTTTATGTGTATCATTTAAAACAGTCATCTTATTGTGAAAATAAATTTCTTTGTTTTTGTTTAAACTAAATAAAAAA---GGTTCTTCACGGTT-TTCACAATGTACCTTTATTATTTACCATTTGGAACTTGTCAAACTATTTTAGATTG-GCA-GTCTTAACAG-GGACCAGAAT-GATAATTGGAAATAA-GTTTCAGAATC-AATATAA--AACTTCAT---GA--CCAAAATTGAAGTATTTGGAATTGATTAGCTCTTTAACCAATAGTAACAGTGTGTTTAATATTA-ATCAGTC--T--CTTATAAGAGTCTTTAAAAGGGATAGCCC
gi|1 : cattgttccactttcaagcataacttttaaacatgtgacagtgtgctagtcaAAATTATGATGTCA------TCAATTCA---AATAAGAATAGTTCTGGGACCGTATTCATAAAGCTTCTTAGATTTTCGCTAAGAAAATATCTTAACTCAGTAATATTTTCTTAGTTAAC-ATGAAAACAAATTTTTAACTTATTAATAAGTGATATTCATAAAACCACTAAGA-CAAATCTTAGTTAAGA-AAACGTATAAGAAAATAATAATTCTT-AGA-TCAAATATTT---TATCTTAAA--AAAA--ATCTTAACTCGGTAACTAAGGAAGTCTGGGATT-TCCAAATCTTAAAATAGTATCGGAAGAGATAGTTTGGAAAATACCTTCTATGCTATAAGCTGCTTTAAATGAGTATTGAAATGTCAATGTGGTGTGTGAGCTTGTGTGTAGTGT----------G-TTTGTGTATATATACCTATATGTGTGTA-GGTATCTAGCTGTGTTTGGGTGTT-TGTGTAT-AAAAACTATGTACATGTTAGTCACTCAACTCGTTTTGTGTTTATGTG-TTAG--ATATATATGTTACTACAGCAGTGTACTTTGATGAGAAAC--TGTGTATAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA---------T-TC-GTATTATACTA-AAC--TGGAAATGTAAAATCAAATACAGTGAAACGCGATACTCGTGAACTTTATTTAGAAAAACAATGAATAGATGAATTACTTTAAAAATGTCCCTATCAAAATAGTGTTATGATTATAAATGATATTGCCGCTGTTTTCTACCATAATATAAACCGCTGCGagtctgtgatacatttatttagactattactctgaattgataattcagatacatcgagatacaaattacatttttgctattaaaaaacctacctgtgaaaaaaatatcagtgtgtaaggatttatgaaaaagacaactgaataacagctgcaatatgacatacaaaagtcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataagagaaataattcaattgatattcaatgaagacataatgccttgttgaaagagggtctaaacgaggctatgaaaatttcacaaaattattcaaagtggttacaaatttgtgacagacatgaaattataaacattgtcttttgccaatttcagtacatttaagtgatttgttttttcatcattgaagtaagtatttggaacttgcgcaaaacatatcattgaatgataaatgtagctaaaatatttgcaatggtttgcatggtaatgtgagatggtttatacaggctggacactgtattgtcatagcattaacaaatgggtgagcagacatgcagaaaaatggcaatttcatagtaaaaaattatttagatggagattaaatgaaggggaaacatggaaattgagtatataaattggtgtcattttttcccttttccagaatttagactgattaaacaaaggtttgatagacaatatttcatattctggccagattcttatcaagttattcatcacctttaaggttccagtattctcttgcagagaaattctatgtaaaactatactgttatttgtttccaagtcaatgaaccaacagttatatttataaaataagatcaggctaaaacttactataattagcccctaaaacccatgtatctgctctggtaaacagtgtgaaaccaatacagatctctttcatttggtgcaattgggattgagacaaattttaccaaatgattataactttatattttcacaaaggctccagtttgggaaacagtgagtttcaattgaaaaatataaacaaaagctataaatttcacataatcaatgacagttatatctaaactatctaaactgtctctaacaactcccaaattatgtacaaatatttaaaaaaatgacaatgacatcacaaaatgaaattatgatgtcatcaattcaaataagaatagttctgggaccgtattcataaagcttcttagattttcgctaagaaaatatcttaactcagtaatattttcttagttaacatgaaaacaaatttttaacttattaataagtgatattcataaaaccactaagacaaatcttagttaagaaaacgtataagaaaataataattcttagatcaaatattttatcttaaaaaaaatcttaactcggtaactaaggaagtctgggatttccaaatcttaaaatagtatcggaagagatagtttggaaaataccttctatgctataagctgctttaaatgagtattgaaatgtcaatgtggtgtgtgagcttgtgtgtagtgtgtttgtgtatatatacctatatgtgtgtaggtatctagctgtgtttgggtgtttgtgtataaaaactatgtacatgttagtcactcaactcgttttgtgtttatgtgttagatatatatgttactacagcagtgtactttgatgagaaactgtgtatagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattcgtattatactaaactggaaatgtaaaatcaaatacagtgaaacgcgatactcgtgaactttatttagaaaaacaatgaatagatgaattactttaaaaatgtccctatcaaaatagtgttatgattataaatgatattgccgctgttttctaccataatataaaccgctgcgg
gi|10 : cattgttccactttcaagcataacttttaaacatgtgacagtgtgctagtcaataatcctatatcatcagaacacaacatccaaaggtatgatctcaaagtcaaagacgtgataacaactatctagtttcataattgctacaacgcaaatcattttcagggaatttaatgcatcatccatgcactggaatggaatataaaatatatttcctataccataatttaatatatctgaaatagttgaccaaaaactttagtttgaatattacttccaaacagtttatgtgtatcatttaaaacagtcatcttattgtgaaaataaatttctttgtttttgtttaaactaaataaaaaaggttcttcacggttttcacaatgtacctttattatttaccatttggaacttgtcaaactattttagattggcagtcttaacagggaccagaatgataattggaaataagtttcagaatcaatataaaacttcatgaccaaaattgaagtatttggaattgattagctctttaaccaatagtaacagtgtgtttaatattaatcagtctcttataagagtctttaaaagggatagcccagtctgtgatacatttatttagactattactctgaattgataattcagatacatcgagatacaaattacatttttgctattaaaaaacctacctgtgaaaaaaatatcagtgtgtaaggatttatgaaaaagacaactgaataacagctgcaatatgacatacaaaagtcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataagagaaataattcaattgatattcaatgaagacataatgccttgttgaaagagggtctaaacgaggctatgaaaatttcacaaaattattcaaagtggttacaaatttgtgacagacatgaaattataaacattgtcttttgccaatttcagtacatttaagtgatttgttttttcatcattgaagtaagtatttggaacttgcgcaaaacatatcattgaatgataaatgtagctaaaatatttgcaatggtttgcatggtaatgtgagatggtttatacaggctggacactgtattgtcatagcattaacaaatgggtgagcagacatgcagaaaaatggcaatttcatagtaaaaaattatttagatggagattaaatgaaggggaaacatggaaattgagtatataaattggtgtcattttttcccttttccagaatttagactgattaaacaaaggtttgatagacaatatttcatattctggccagattcttatcaagttattcatcacctttaaggttccagtattctcttgcagagaaattctatgtaaaactatactgttatttgtttccaagtcaatgaaccaacagttatatttataaaataagatcaggctaaaacttactataattagcccctaaaacccatgtatctgctctggtaaacagtgtgaaaccaatacagatctctttcatttggtgcaattgggattgagacaaattttaccaaatgattataactttatattttcacaaaggctccagtttgggaaacagtgagtttcaattgaaaaatataaacaaaagctataaatttcacataatcaatgacagttatatctaaactatctaaactgtctctaacaactcccaaattatgtacaaatatttaaaaaaatgacaatgacatcacaaaatgACTTTATTTAGAAAAACAATG-ATAGATg
gi|10 : gtTGAATTACTTTAAAAATGTCACTATCAAAATAGTGTTATGATTATAAATGATATTGCCGCAGTTTTCTACCATAATATAAACCatatataaataattaatgtatctaaatgtattcaaaagtattcgcagtgaattactttaaaaatgtcactatcaaaatagtgttatgattataaatgatattgccgcagttttctaccataatataaacctc
gi|11 : gtactttatttagaaaaacaatgatagatatatataaataattaatgtatctaaatgtattcaaaagtattcgcagCTAGGATTATATTCATAAAGCCTCTTAGATTGTTTCCAA--------TTTAGCT---------------AACTAAACGTAAAAACAAGCACTCAA-TTG------AGTTGTATTCATAAAACAACTGAGAACAAATCTGAGCT----------TATAAGAAAATTAAAATTGTTAAGAGTCAGG-ATTTAAGTATCTTCAA--tc
gi|12 : TGAATTACCTTAAAAATGTCCTTATTAATATAGTGTAATGGTTATAAATAATATTTCTGCTGTTTTCTACCATAATATAAAACGGTGCG
gi|13 : ttgatatatatataaattatatatatattaataattattgtaaatgtattcaaaagtttttgcagATTTGTTACTACAACATTATATTTTGGTGAGAAGCTATATGTAAAGTTTTCTTCTTCTT-TCTTCTTCTTT-CTTTTTATTCTTCTCC-TACTTTTTCTT-GAATAACAATA-AACATTGAACA---AAAATTGAAC-CGGGGG
gi|14 : TCAATGATATTTTCTTAGCTAAG-ATGAAAACAAGTTCTTAACTCG------AGTGGCATTTATAAAACCACTGAGA-AATATTTT-GCTAAGA-TTGAGTTTAAGAAAATAATCA---TT-AAG-TAAAATA------CATATTAA
gi|15 : TATTT---CATAATAAA--AAAATCATCT--ACTCTGTATCTA--GAAGTGAGTGATT-TCGAAATCTTCAAATAGTATTTGAGGTGATAATTTGGAAACTGCCTTCTGTAtgtt
gi|2 : CCATATTCATAAAGCTCCTTAGATTTTCGCTAAGAAAATATCTTAACTCAGTAATATTTTCTTAGTCAAG-ATGAAAACAAATTTTTAACTTA------AGTGGTATTCATAAAACCACTAAGA-CAAATCTTAGTTAAGA-AAACGTATAAGAAAATAATAATTCTT-AGA-TCAAATATTT---CATCTTAAA--AAAA--ACCTTAACTCGGTAACTAAGGAAATCTGGGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGTTTTGAAAATACCTTCTATACTATAATCTACTTTAACTGAGTAATGAAATGTCAATGTGGTATGTGAGCTTGTGTGTAGTGT----------G-TTTGTGTATATATACCTATGTGTGTGTAGGGTATCTGGCTGTGTTTGTGTG-TATGTGTAT-GTAAACTATGTACATGTTAGTCACTCAACTCGTTTTGTGTTTATGTATTTAGATATATATATGTTACTACAACAGTGTACTTCGATGAGAAAC--TGTGTATAGTCTTCTTCCCCTTCTTCTCTTTTTTACTTCTTATTCTTCTCCTT-CTTTTT-TCAGTATTATACTACAAC--TGGAAATGTAAAATCAAACACAGGGGAACGCGATACTCGTGAACTTTATATAGAAAAACAATGAATAGATaa
gi|2 : TGAATTACTTTAAAAATGTCCCTATTAAAATAGTGAAATGATTATAAATGATATTGCCACTGTTTTCTGCCATAATATAAACCGCTGTGatatataaatatattagtgtatctaaatgtattcaaaagttttcgcagtgaattactttaaaaatgtccctattaaaatagtgaaatgattataaatgatattgccactgttttctgccataatataaaccgctgtg
gi|3 : ccatattcataaagctccttagattttcgctaagaaaatatcttaactcagtaatattttcttagtcaagatgaaaacaaatttttaacttaagtggtattcataaaaccactaagacaaatcttagttaagaaaacgtataagaaaataataattcttagatcaaatatttcatcttaaaaaaaaccttaactcggtaactaaggaaatctgggatttccaaatcttaaaatagtatcggaagtgatagttttgaaaataccttctatactataatctactttaactgagtaatgaaatgtcaatgtggtatgtgagcttgtgtgtagtgtgtttgtgtatatatacctatgtgtgtgtagggtatctggctgtgtttgtgtgtatgtgtatgtaaactatgtacatgttagtcactcaactcgttttgtgtttatgtatttagatatatatatgttactacaacagtgtacttcgatgagaaactgtgtatagtcttcttccccttcttctcttttttacttcttattcttctccttcttttttcagtattatactacaactggaaatgtaaaatcaaacacaggggaacgcgatactcgtgaactttatatagaaaaacaatgaatagatatatataaatatattagtgtatctaaatgtattcaaaagttttcgcagATAATCCAGTGTTTCATCGGAACACAACCTCCCGAGGTCATTAGGACTGTGAGAGTCAAACACCCAATAACAGCCACCCAGTTCAATAATTGCTACAGTGCAGCAGTCAACAGTAAGAAAGCAAATCATTGTCACGGAATGCACTGCATCATCCATGCACTGGAATGGACTGGACCATCAAATATACTTCCCAGGCCATAATTTGATATATTTGAAAGTTTAGTT
gi|3 : TAATTTGATATATT----TGAAAGTTTAGTTTATGAGTATCATTTAAAAAA--CATCTTATTGCAAAAATCTGATTCTTTACTGCTATTCAGAtatgagtatcatttaaaaaacatcttattgcaaaaatctgattctttactgctattcagagcgtatcttaaatatttaccatttggaactagtcaaactattttaggtaggcagtctagagagtcttagagggttaatttaaaactttatgactgtggtcctaaaacacatgagtggaattctatttattccacgaaagacatccaaccaattgtaaccaattgtaataatatcaaataatgttaatcaaacattattaattttattcagaagtcaaaattgatatttttggaattgattagctctgtaatcagtagttacattatgtttagtattatatcagtcagtcacttattggtcattagaagggatagccct
gi|3 : ataatccagtgtttcatcggaacacaacctcccgaggtcattaggactgtgagagtcaaacacccaataacagccacccagttcaataattgctacagtgcagcagtcaacagtaagaaagcaaatcattgtcacggaatgcactgcatcatccatgcactggaatggactggaccatcaaatatacttcccaggccaAAAAATCTGATTCTTTACTGCTATTCAGAGCGTATCTTAAATATTTACCATTTGGAACTAGTCAAACTATTTTAGGTAG-GCA-GTCTAGAGAGTCT--TAGAGG-GTTAATTTAAAAgcgtatcttaaatatttaccatttggaactagtcaaactattttaggtaggcagtctagagagtcttagagggttaatttaaaactttatgactgtggtcctaaaacacatgagtggaattctatttattccacgaaagacatccaaccaattgtaaccaattgtaataatatcaaataatgttaatcaaacattattaattttattcagaagtcaaaattgatatttttggaattgattagctctgtaatcagtagttacattatgtttagtattatatcagtcagtcacttattggtcattagaagggatagccct
gi|3 : ataatccagtgtttcatcggaacacaacctcccgaggtcattaggactgtgagagtcaaacacccaataacagccacccagttcaataattgctacagtgcagcagtcaacagtaagaaagcaaatcattgtcacggaatgcactgcatcatccatgcactggaatggactggaccatcaaatatacttcccaggccataatttgatatatttgaaagtttagtttatgagtatcatttaaaaaacatcttattgcGT-AATAATATCAAATAATGTT----AATCAAACATTATTAATTTTATTCAGAAGTCAAAATTGATATTTTTGGAATTGATTAGCTCTGTAATCAGTAGTTACATTATGTTTAGTATTATATCAGTCAGTCACTTAT--TGGTCATTAGAAGGGATAGCCCctttatgactgtggtcctaaaacacatgagtggaattctatttattccacgaaagacatccaaccaattgtaaccaattgtaataatatcaaataatgttaatcaaacattattaattttattcagaagtcaaaattgatatttttggaattgattagctctgtaatcagtagttacattatgtttagtattatatcagtcagtcacttattggtcattagaagggatagccct
gi|4 : ataatccagtgtttcatcggaacacaacctcccgaggtcattaggactgtgagagtcaaacacccaataacagccacccagttcaataattgctacagtgcagcagtcaacagtaagaaagcaaatcattgtcacggaatgcactgcatcatccatgcactggaatggactggaccatcaaatatacttcccaggccataatttgatatatttgaaagtttagtttatgagtatcatttaaaaaacatcttattgcaaaaatctgattctttactgctattcagagcgtatcttaaatatttaccatttggaactagtcaaactattttaggtaggcagtctagagagtcttagagggttaatttaaaactttatgactgtggtcctaaaacacatgagtggaattctatttattccacgaaagacatccaaccaattgtaaccaattTAATCTTGGTGCCGTATTCATAAAGCTTCTTAGATTTTCGCTAAGAAAATATCTTAACTCAGTAATATTTTCTAAGCTAAG-ATGAAAACATTTTTTTAACTTA------AGTGGTATTCATAAAACCACTAAGA-CAAATCTTAGTTAAGA-AAACGTATAAGAAAATAATAATTCAT-AGA-TCAAATATTT---GATCTT-AA--AAAA--ATCTTAACTCGGTAACTAAGGAAGTCTGGGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGTTTGGAAAATACCTTCTATACTATAATCTACTTTAAATGAGTATTACAATGTCAATGTGGTA--TGAGCTTGTGTGTAGTGTCACTCAACTCGTTTTGTGTTTATGTGTTTAGATATATATA-TATATGTTACTGCAACAGTGTA-C-TTTG-ATGAGAAACTGTGTATAt
gi|5 : aaatgttaatttgtttaacaaaaattgttttacatgAAATAATGA-GTCAATCGGGTCAATACACTTAATGGAAAAAGACCAGGAGCCGTATTCCTATAGCTTCTTAGAGTTTCGCTTAGAAAATATCTTAGCTCAGTAATATTTTCTTAGCTAAG-ATAAAAACAATTTTTTAACTTA------AGTGGTATTCATAAAACCAATAAGA-CAAATCTGAGTTAAGA-AAACGTTTAAGAAAATAATAATTCTG-AGA-CCAAATATCT---CATCTTTAA--AAAA--ATCTTAACTCGGTAAATAAGGAAGTCTGGTATT-TCCAAATCTCAAAACAGTATCAGAAGTGATAGTTTGGAAAATACATTCTATACTATAATCTACTTTAAATGAGTATTGAAATGTCAATGTGGTATGTGAGCGTGTGTGTA--GT----------G-TTTGTGTATATATACCTATGTGTGTGTA-GG-GTATAGATATGAAT---TG-A-TATATAT-ATAAATTATATATATATTA
gi|6 : CTTAGACAATACCTTAACTCAATTATATTTTA--AGCTAAG-ATGAAAATAATTTCCTAA--TA------A-TCACATTCAGTGAACCACAAAAA-C--ATCGTAGCTAAAATAAA
gi|6 : aatagccagtaattgttcggaccatgtagtttagtttaaacTAAATTAAAA--AGTTTAACTAGTTAATTATGGATGTCGGGGATTGTCCAT-TCTTAAA-TGGTATCGGAAAAGACAGTTTGTAAAATATTGTTTATttaaaaagtttaactagttaattatggatgtcggggattgtccattcttaaatggtatcggaaaagacagtttgtaaaatattgtttat
gi|7 : aatagccagtaattgttcggaccatgtagtttagtttaaaccttagacaataccttaactcaattatattttaagctaagatgaaaataatttcctaataatcacattcagtgaaccacaaaaacatcgtagctaaaaTACTA-AAC--TGGAAATGTAAAATCAAATACAGGGGAACGCAATACTCGTGAACTTTATTTAGAAAAACAATGA
gi|7 : TGAATTACTTTAAAAATGTCCCTATCAAAATAGTGTTATGATTATAAATGATATTGCCGCTGTTTTCTACCATAATATAAACCGCTGCGnnnnnnnnnnnnnnnnnnnnnnnnnaataattagtctatcttaatgtattcaaaagttttcgcagtgaattactttaaaaatgtccctatcaaaatagtgttatgattataaatgatattgccgctgttttctaccataatataaaccgctgcg
gi|8 : tactaaactggaaatgtaaaatcaaatacaggggaacgcaatactcgtgaactttatttagaaaaacaatgannnnnnnnnnnnnnnnnnnnnnnnnaataattagtctatcttaatgtattcaaaagttttcgcagACTA-AAC--TGGAAATGTAAAATCAAATACAGGGGAACGCAATACTCGTGAACTTTATTTAGAAAAACAATGAATATAT
gi|8 : TGAATTACTTTAAAAATGTCCCTATCAAAATAGTGTTATGATTATAAATGATATTGCCGCTGTTTTCTACCATAATATAAACCGCTGCGatatatatatatataaataattagtctatcttaatgtattcaaaagttttcgcagtgaattactttaaaaatgtccctatcaaaatagtgttatgattataaatgatattgccgctgttttctaccataatataaaccgctgcg
gi|9 : actaaactggaaatgtaaaatcaaatacaggggaacgcaatactcgtgaactttatttagaaaaacaatgaatatatatatatatatatataaataattagtctatcttaatgtattcaaaagttttcgcagCTAGTTTTTAATAGTT-TTTATAGCGTAC---AATTATGTCCCA--TGGAG-TTGTCG--CTATTTT-GTTTGTACACGCCATGACAA-CG--TAGAGTCGATAA---GAAATAA
blockSeqs : AG T C C C TAG C G G C C A GTGCAGCAGTCAACAGTAAGAAA G C G C C GGACC C G GTT T TG GTT A A . CT A G T T T A G C T C AA A G T C TCT C TTTA T . A T TT TCA AG T T G T T T AGTCA T A A . ATCGGG A CTT TT C G C . A T A G AAG C TT TC A G T G CACTCAACTC T G T C G T TT GT TA T G T T AT TA C A CTA C A C AT
blockSeqs : A A . T . . . G . T . . CG . TATC TT . G C . . . . . . A . . A . T G . . . T G T C AC GT C T . G . . . CTT . . . .
blockSeqs : . G TA . A C . . . . . . A . . A . . . . . . . A A T AA . A . . T . .
blockSeqs : TT . T C . . . . . . A . . T . . .
blockSeqs : . . T . . . . . . . T . . . .
blockSeqs : . . T . . . . . A .
blockSeqs : .
blockSeqCons : ******
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATCCAGTGTNTCATCGGAACACAACNTCCCGAGGTCATTAGGACTNTNAGAGTCAAANACNCGATAACAGCCACCCAGTTCNATAATTGCTACAGTGCAGCAGTCAACAGTAAGAAAGCAAATCATTNTCANGGAATNCANTGCATCATCCATGCACTGGAATGGANTGGACCATNAAATATACTTCCCANGCCATAATTTGATATATCTGAAAGTTTAGTTGACCAAAAACTTTAGTTTGATATATTACTTCGAAAGTTCAGTTTATGNGTATCATTTAAAANAGTCATCTTATTGCGAAAATNNGNTTCTTTGCTNCTGTTCAGACTAAATAAAAAATCTGGTTCTTNACNGTT-TTCANAGCGTACCTTAATTATTTACCATTTGGAACTTGTCGAACTATTTTAGNTTG-GCA-GTCTTGACAG-CG--TAGAGT-GATAATTTGAAATAATGTTTCAGAATCAAACATNATTAACTTCATTCAGAAGCCAAAATTGANGTNTTTGGAATTGATTAGCTCTNTAACCAGTAGTNACANTGTGTTTAGTATTATATCAGTCAGTCACTTATAANGGTCNTTAGAAGGGATAGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATNATGATGTCAATCGGGTCAATNCACTTAATGGGAATAGTCCTGGGGCCGTATTCATAAAGCTTCTTAGATTTTCGCTAAGAAAATATCTTAACTCAGTAATATTTTCTTAGCTAAG-ATGAAAACAANTTCTTAACTTA------AGTGGTATTCATAAAACCACTAAGA-CAAATCTTAGCTAAGA-AAACGTATAAGAAAATAATAATTCTT-AGA-TCAAATATTT---CATCTTAAA--AAAA--ATCTTAACTCGGTAACTAAGGAAGTCTGGGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGTTTGGAAAATACCTTCTATACTATAATCTACTTTAAATGAGTATTGAAATGTCAATGTGGTATGTGAGCTTGTGTGTAGTGT----------G-TTTGTGTATATATACCTATGTGTGTGTA-GGTATNTAGCTGCGNTTGTGTG-T-TGTGTAT-ANAAACTATGTACATGTTAGTCACTCAACTCGTTTTGTGTTTATGTGTTTAGATATATATATGTTACTACAACAGTGTACTTCGATGAGAAAC--TGTGTATAGTCTTCTTCCCCTTCTCCTCTTCTTTACTTCTTATTCTTCTCC-T-CTTTTT-TC-GTATTATACTA-AAC--TGGAAATGTAAAATCAAATACAGGGGAACGCGATACTCGTGAACTTTATTTAGAAAAACAATGAATAGATGAATTACTTTAAAAATGTCCCTATCAAAATAGTGTTATGATTATAAATGATATTGCCGCTGTTTTCTACCATAATATAAACCGCTGCG
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATCCAGTGTNTCATCGGAACACAACNTCCCGAGGTCATTAGGACTNTNAGAGTCAAANACNCGATAACAGCCACCCAGTTCNATAATTGCTACAGTGCAGCAGTCAACAGTAAGAAAGCAAATCATTNTCANGGAATNCANTGCATCATCCATGCACTGGAATGGANTGGACCATNAAATATACTTCCCANGCCATAATTTGATATATCTGAAAGTTTAGTTGACCAAAAACTTTAGTTTGATATATTACTTCGAAAGTTCAGTTTATGNGTATCATTTAAAANAGTCATCTTATTGCGAAAATNNGNTTCTTTGCTNCTGTTCAGACTAAATAAAAAATCTGGTTCTTNACNGTT-TTCANAGCGTACCTTAATTATTTACCATTTGGAACTTGTCGAACTATTTTAGNTTG-GCA-GTCTTGACAG-CG--TAGAGT-GATAATTTGAAATAATGTTTCAGAATCAAACATNATTAACTTCATTCAGAAGCCAAAATTGANGTNTTTGGAATTGATTAGCTCTNTAACCAGTAGTNACANTGTGTTTAGTATTATATCAGTCAGTCACTTATAANGGTCNTTAGAAGGGATAGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATNATGATGTCAATCGGGTCAATNCACTTAATGGGAATAGTCCTGGGGCCGTATTCATAAAGCTTCTTAGATTTTCGCTAAGAAAATATCTTAACTCAGTAATATTTTCTTAGCTAAG-ATGAAAACAANTTCTTAACTTA------AGTGGTATTCATAAAACCACTAAGA-CAAATCTTAGCTAAGA-AAACGTATAAGAAAATAATAATTCTT-AGA-TCAAATATTT---CATCTTAAA--AAAA--ATCTTAACTCGGTAACTAAGGAAGTCTGGGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGTTTGGAAAATACCTTCTATACTATAATCTACTTTAAATGAGTATTGAAATGTCAATGTGGTATGTGAGCTTGTGTGTAGTGT----------G-TTTGTGTATATATACCTATGTGTGTGTA-GGTATNTAGCTGCGNTTGTGTG-T-TGTGTAT-ANAAACTATGTACATGTTAGTCACTCAACTCGTTTTGTGTTTATGTGTTTAGATATATATATGTTACTACAACAGTGTACTTCGATGAGAAAC--TGTGTATAGTCTTCTTCCCCTTCTCCTCTTCTTTACTTCTTATTCTTCTCC-T-CTTTTT-TC-GTATTATACTA-AAC--TGGAAATGTAAAATCAAATACAGGGGAACGCGATACTCGTGAACTTTATTTAGAAAAACAATGAATAGATGAATTACTTTAAAAATGTCCCTATCAAAATAGTGTTATGATTATAAATGATATTGCCGCTGTTTTCTACCATAATATAAACCGCTGCG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ATAGTCCGCAGTTATTTCATGGAGTTGTCGCTATTTTGTCATGGCAACGTGTCGTTAAGAAATAAGTTATAAAGTTGTTTGTTTTAAAGGATCAA
Alignments
lowQualScore : 11 1 222 1 66666666666666666666666 22222 222 1 222222 222 11 1 1 1 1 22222 1 1111 1 2222 1 11 222 11 1 22222 111 1 222222 222 111111 111 4444444444 1 1 222 1 1 11 11 1 1 3333 1 1 11
lowQualScore : 88 1 1 2 5 111 5 1 1 1 1 1 44444444444444444444444 1 1 1 1 1 55555 1 1 111 5 444444 111 1 1 88 22 1 1 5 1 1 3 1 6 7 6 88 7 1 3 3 88888 0 0000 5 3333 5 1 88 111 88 1 1 1 1 1 5 77777 999 1 1 5 888888 1 111 0 0 33 5 1 4 666666 5 5 6 6 000 3 77 99 3 6 3 2 3333333333 0 0 3 1 1 2 22 55 111 0 3 0 1 5 88 0 88 0 0 2222 3 3 8 11 0 0 0
lowQualScore : .. . . . . ... . . . . . . ....................... . . . . . ..... . . ... . ...... ... . . .. .. . . . . . . . . . . .. . . . . ..... . .... . .... . . .. ... .. . . . . . . ..... ... . . . ...... . ... . . .. . . . ...... . . . . ... . .. .. . . . . .......... . . . . . . .. .. ... . . . . . .. . .. . . .... . . . .. . . .
lowQualScore : 00 0 0 5 0 000 0 0 0 0 0 0 55555555555555555555555 0 0 0 0 0 55555 0 0 000 5 555555 000 0 0 00 00 0 0 5 0 0 3 0 7 3 7 00 3 0 3 3 33333 0 0000 5 5555 5 0 55 000 00 0 0 0 0 0 5 00000 555 0 0 5 555555 0 000 2 3 00 7 0 3 444444 7 7 7 7 000 4 99 22 5 7 2 5 8888888888 0 0 2 0 2 0 22 55 222 2 2 0 0 5 55 7 33 3 7 3333 3 3 0 00 8 8 8
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATCCAGTGTNTCATCGGAACACAACNTCCCGAGGTCATTAGGACTNTNAGAGTCAAANACNCGATAACAGCCACCCAGTTCNATAATTGCTACAGTGCAGCAGTCAACAGTAAGAAAGCAAATCATTNTCANGGAATNCANTGCATCATCCATGCACTGGAATGGANTGGACCATNAAATATACTTCCCANGCCATAATTTGATATATCTGAAAGTTTAGTTGACCAAAAACTTTAGTTTGATATATTACTTCGAAAGTTCAGTTTATGNGTATCATTTAAAANAGTCATCTTATTGCGAAAATNNGNTTCTTTGCTNCTGTTCAGACTAAATAAAAAATCTGGTTCTTNACNGTT-TTCANAGCGTACCTTAATTATTTACCATTTGGAACTTGTCGAACTATTTTAGNTTG-GCA-GTCTTGACAG-CG--TAGAGT-GATAATTTGAAATAATGTTTCAGAATCAAACATNATTAACTTCATTCAGAAGCCAAAATTGANGTNTTTGGAATTGATTAGCTCTNTAACCAGTAGTNACANTGTGTTTAGTATTATATCAGTCAGTCACTTATAANGGTCNTTAGAAGGGATAGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATNATGATGTCAATCGGGTCAATNCACTTAATGGGAATAGTCCTGGGGCCGTATTCATAAAGCTTCTTAGATTTTCGCTAAGAAAATATCTTAACTCAGTAATATTTTCTTAGCTAAG-ATGAAAACAANTTCTTAACTTA------AGTGGTATTCATAAAACCACTAAGA-CAAATCTTAGCTAAGA-AAACGTATAAGAAAATAATAATTCTT-AGA-TCAAATATTT---CATCTTAAA--AAAA--ATCTTAACTCGGTAACTAAGGAAGTCTGGGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGTTTGGAAAATACCTTCTATACTATAATCTACTTTAAATGAGTATTGAAATGTCAATGTGGTATGTGAGCTTGTGTGTAGTGT----------G-TTTGTGTATATATACCTATGTGTGTGTA-GGTATNTAGCTGCGNTTGTGTG-T-TGTGTAT-ANAAACTATGTACATGTTAGTCACTCAACTCGTTTTGTGTTTATGTGTTTAGATATATATATGTTACTACAACAGTGTACTTCGATGAGAAAC--TGTGTATAGTCTTCTTCCCCTTCTCCTCTTCTTTACTTCTTATTCTTCTCC-T-CTTTTT-TC-GTATTATACTA-AAC--TGGAAATGTAAAATCAAATACAGGGGAACGCGATACTCGTGAACTTTATTTAGAAAAACAATGAATAGATGAATTACTTTAAAAATGTCCCTATCAAAATAGTGTTATGATTATAAATGATATTGCCGCTGTTTTCTACCATAATATAAACCGCTGCG
Reference ( family-589 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATCCAGTGTNTCATCGGAACACAACNTCCCGAGGTCATTAGGACTNTNAGAGTCAAANACNCGATAACAGCCACCCAGTTCNATAATTGCTACAGTGCAGCAGTCAACAGTAAGAAAGCAAATCATTNTCANGGAATNCANTGCATCATCCATGCACTGGAATGGANTGGACCATNAAATATACTTCCCANGCCATAATTTGATATATCTGAAAGTTTAGTTGACCAAAAACTTTAGTTTGATATATTACTTCGAAAGTTCAGTTTATGNGTATCATTTAAAANAGTCATCTTATTGCGAAAATNNGNTTCTTTGCTNCTGTTCAGACTAAATAAAAAATCTGGTTCTTNACNGTT-TTCANAGCGTACCTTAATTATTTACCATTTGGAACTTGTCGAACTATTTTAGNTTG-GCA-GTCTTGACAG-CG--TAGAGT-GATAATTTGAAATAATGTTTCAGAATCAAACATNATTAACTTCATTCAGAAGCCAAAATTGANGTNTTTGGAATTGATTAGCTCTNTAACCAGTAGTNACANTGTGTTTAGTATTATATCAGTCAGTCACTTATAANGGTCNTTAGAAGGGATAGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATNATGATGTCAATCGGGTCAATNCACTTAATGGGAATAGTCCTGGGGCCGTATTCATAAAGCTTCTTAGATTTTCGCTAAGAAAATATCTTAACTCAGTAATATTTTCTTAGCTAAG-ATGAAAACAANTTCTTAACTTA------AGTGGTATTCATAAAACCACTAAGA-CAAATCTTAGCTAAGA-AAACGTATAAGAAAATAATAATTCTT-AGA-TCAAATATTT---CATCTTAAA--AAAA--ATCTTAACTCGGTAACTAAGGAAGTCTGGGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGTTTGGAAAATACCTTCTATACTATAATCTACTTTAAATGAGTATTGAAATGTCAATGTGGTATGTGAGCTTGTGTGTAGTGT----------G-TTTGTGTATATATACCTATGTGTGTGTA-GGTATNTAGCTGCGNTTGTGTG-T-TGTGTAT-ANAAACTATGTACATGTTAGTCACTCAACTCGTTTTGTGTTTATGTGTTTAGATATATATATGTTACTACAACAGTGTACTTCGATGAGAAAC--TGTGTATAGTCTTCTTCCCCTTCTCCTCTTCTTTACTTCTTATTCTTCTCC-T-CTTTTT-TC-GTATTATACTA-AAC--TGGAAATGTAAAATCAAATACAGGGGAACGCGATACTCGTGAACTTTATTTAGAAAAACAATGAATAGATGAATTACTTTAAAAATGTCCCTATCAAAATAGTGTTATGATTATAAATGATATTGCCGCTGTTTTCTACCATAATATAAACCGCTGCG
gi|1 : ATAATCC--TATATCATCAGAACACAACATCCAAAGGT-AT---GA-TCTCAAAGTCAAAGACGTGATAACAACTATCTAGTTTCATAATTGCTACA------------AC---------GCAAATCATTTTCAGGGAATTTAATGCATCATCCATGCACTGGAATGGAAT-----ATAAAATATATTTCCTATACCATAATTTAATATATCTGAAA---TAGTTGACCAAAAACTTTAGTTTGA-ATATTACTTCCAAA---CAGTTTATGTGTATCATTTAAAACAGTCATCTTATTGTGAAAATAAATTTCTTTGTTTTTGTTTAAACTAAATAAAAAA---GGTTCTTCACGGTT-TTCACAATGTACCTTTATTATTTACCATTTGGAACTTGTCAAACTATTTTAGATTG-GCA-GTCTTAACAG-GGACCAGAAT-GATAATTGGAAATAA-GTTTCAGAATC-AATATAA--AACTTCAT---GA--CCAAAATTGAAGTATTTGGAATTGATTAGCTCTTTAACCAATAGTAACAGTGTGTTTAATATTA-ATCAGTC--T--CTTATAAGAGTCTTTAAAAGGGATAGCCC
gi|1 : cattgttccactttcaagcataacttttaaacatgtgacagtgtgctagtcaAAATTATGATGTCA------TCAATTCA---AATAAGAATAGTTCTGGGACCGTATTCATAAAGCTTCTTAGATTTTCGCTAAGAAAATATCTTAACTCAGTAATATTTTCTTAGTTAAC-ATGAAAACAAATTTTTAACTTATTAATAAGTGATATTCATAAAACCACTAAGA-CAAATCTTAGTTAAGA-AAACGTATAAGAAAATAATAATTCTT-AGA-TCAAATATTT---TATCTTAAA--AAAA--ATCTTAACTCGGTAACTAAGGAAGTCTGGGATT-TCCAAATCTTAAAATAGTATCGGAAGAGATAGTTTGGAAAATACCTTCTATGCTATAAGCTGCTTTAAATGAGTATTGAAATGTCAATGTGGTGTGTGAGCTTGTGTGTAGTGT----------G-TTTGTGTATATATACCTATATGTGTGTA-GGTATCTAGCTGTGTTTGGGTGTT-TGTGTAT-AAAAACTATGTACATGTTAGTCACTCAACTCGTTTTGTGTTTATGTG-TTAG--ATATATATGTTACTACAGCAGTGTACTTTGATGAGAAAC--TGTGTATAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA---------T-TC-GTATTATACTA-AAC--TGGAAATGTAAAATCAAATACAGTGAAACGCGATACTCGTGAACTTTATTTAGAAAAACAATGAATAGATGAATTACTTTAAAAATGTCCCTATCAAAATAGTGTTATGATTATAAATGATATTGCCGCTGTTTTCTACCATAATATAAACCGCTGCGagtctgtgatacatttatttagactattactctgaattgataattcagatacatcgagatacaaattacatttttgctattaaaaaacctacctgtgaaaaaaatatcagtgtgtaaggatttatgaaaaagacaactgaataacagctgcaatatgacatacaaaagtcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataagagaaataattcaattgatattcaatgaagacataatgccttgttgaaagagggtctaaacgaggctatgaaaatttcacaaaattattcaaagtggttacaaatttgtgacagacatgaaattataaacattgtcttttgccaatttcagtacatttaagtgatttgttttttcatcattgaagtaagtatttggaacttgcgcaaaacatatcattgaatgataaatgtagctaaaatatttgcaatggtttgcatggtaatgtgagatggtttatacaggctggacactgtattgtcatagcattaacaaatgggtgagcagacatgcagaaaaatggcaatttcatagtaaaaaattatttagatggagattaaatgaaggggaaacatggaaattgagtatataaattggtgtcattttttcccttttccagaatttagactgattaaacaaaggtttgatagacaatatttcatattctggccagattcttatcaagttattcatcacctttaaggttccagtattctcttgcagagaaattctatgtaaaactatactgttatttgtttccaagtcaatgaaccaacagttatatttataaaataagatcaggctaaaacttactataattagcccctaaaacccatgtatctgctctggtaaacagtgtgaaaccaatacagatctctttcatttggtgcaattgggattgagacaaattttaccaaatgattataactttatattttcacaaaggctccagtttgggaaacagtgagtttcaattgaaaaatataaacaaaagctataaatttcacataatcaatgacagttatatctaaactatctaaactgtctctaacaactcccaaattatgtacaaatatttaaaaaaatgacaatgacatcacaaaatgaaattatgatgtcatcaattcaaataagaatagttctgggaccgtattcataaagcttcttagattttcgctaagaaaatatcttaactcagtaatattttcttagttaacatgaaaacaaatttttaacttattaataagtgatattcataaaaccactaagacaaatcttagttaagaaaacgtataagaaaataataattcttagatcaaatattttatcttaaaaaaaatcttaactcggtaactaaggaagtctgggatttccaaatcttaaaatagtatcggaagagatagtttggaaaataccttctatgctataagctgctttaaatgagtattgaaatgtcaatgtggtgtgtgagcttgtgtgtagtgtgtttgtgtatatatacctatatgtgtgtaggtatctagctgtgtttgggtgtttgtgtataaaaactatgtacatgttagtcactcaactcgttttgtgtttatgtgttagatatatatgttactacagcagtgtactttgatgagaaactgtgtatagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattcgtattatactaaactggaaatgtaaaatcaaatacagtgaaacgcgatactcgtgaactttatttagaaaaacaatgaatagatgaattactttaaaaatgtccctatcaaaatagtgttatgattataaatgatattgccgctgttttctaccataatataaaccgctgcgg
gi|10 : cattgttccactttcaagcataacttttaaacatgtgacagtgtgctagtcaataatcctatatcatcagaacacaacatccaaaggtatgatctcaaagtcaaagacgtgataacaactatctagtttcataattgctacaacgcaaatcattttcagggaatttaatgcatcatccatgcactggaatggaatataaaatatatttcctataccataatttaatatatctgaaatagttgaccaaaaactttagtttgaatattacttccaaacagtttatgtgtatcatttaaaacagtcatcttattgtgaaaataaatttctttgtttttgtttaaactaaataaaaaaggttcttcacggttttcacaatgtacctttattatttaccatttggaacttgtcaaactattttagattggcagtcttaacagggaccagaatgataattggaaataagtttcagaatcaatataaaacttcatgaccaaaattgaagtatttggaattgattagctctttaaccaatagtaacagtgtgtttaatattaatcagtctcttataagagtctttaaaagggatagcccagtctgtgatacatttatttagactattactctgaattgataattcagatacatcgagatacaaattacatttttgctattaaaaaacctacctgtgaaaaaaatatcagtgtgtaaggatttatgaaaaagacaactgaataacagctgcaatatgacatacaaaagtcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataagagaaataattcaattgatattcaatgaagacataatgccttgttgaaagagggtctaaacgaggctatgaaaatttcacaaaattattcaaagtggttacaaatttgtgacagacatgaaattataaacattgtcttttgccaatttcagtacatttaagtgatttgttttttcatcattgaagtaagtatttggaacttgcgcaaaacatatcattgaatgataaatgtagctaaaatatttgcaatggtttgcatggtaatgtgagatggtttatacaggctggacactgtattgtcatagcattaacaaatgggtgagcagacatgcagaaaaatggcaatttcatagtaaaaaattatttagatggagattaaatgaaggggaaacatggaaattgagtatataaattggtgtcattttttcccttttccagaatttagactgattaaacaaaggtttgatagacaatatttcatattctggccagattcttatcaagttattcatcacctttaaggttccagtattctcttgcagagaaattctatgtaaaactatactgttatttgtttccaagtcaatgaaccaacagttatatttataaaataagatcaggctaaaacttactataattagcccctaaaacccatgtatctgctctggtaaacagtgtgaaaccaatacagatctctttcatttggtgcaattgggattgagacaaattttaccaaatgattataactttatattttcacaaaggctccagtttgggaaacagtgagtttcaattgaaaaatataaacaaaagctataaatttcacataatcaatgacagttatatctaaactatctaaactgtctctaacaactcccaaattatgtacaaatatttaaaaaaatgacaatgacatcacaaaatgACTTTATTTAGAAAAACAATG-ATAGATg
gi|10 : gtTGAATTACTTTAAAAATGTCACTATCAAAATAGTGTTATGATTATAAATGATATTGCCGCAGTTTTCTACCATAATATAAACCatatataaataattaatgtatctaaatgtattcaaaagtattcgcagtgaattactttaaaaatgtcactatcaaaatagtgttatgattataaatgatattgccgcagttttctaccataatataaacctc
gi|11 : gtactttatttagaaaaacaatgatagatatatataaataattaatgtatctaaatgtattcaaaagtattcgcagCTAGGATTATATTCATAAAGCCTCTTAGATTGTTTCCAA--------TTTAGCT---------------AACTAAACGTAAAAACAAGCACTCAA-TTG------AGTTGTATTCATAAAACAACTGAGAACAAATCTGAGCT----------TATAAGAAAATTAAAATTGTTAAGAGTCAGG-ATTTAAGTATCTTCAA--tc
gi|12 : TGAATTACCTTAAAAATGTCCTTATTAATATAGTGTAATGGTTATAAATAATATTTCTGCTGTTTTCTACCATAATATAAAACGGTGCG
gi|13 : ttgatatatatataaattatatatatattaataattattgtaaatgtattcaaaagtttttgcagATTTGTTACTACAACATTATATTTTGGTGAGAAGCTATATGTAAAGTTTTCTTCTTCTT-TCTTCTTCTTT-CTTTTTATTCTTCTCC-TACTTTTTCTT-GAATAACAATA-AACATTGAACA---AAAATTGAAC-CGGGGG
gi|14 : TCAATGATATTTTCTTAGCTAAG-ATGAAAACAAGTTCTTAACTCG------AGTGGCATTTATAAAACCACTGAGA-AATATTTT-GCTAAGA-TTGAGTTTAAGAAAATAATCA---TT-AAG-TAAAATA------CATATTAA
gi|15 : TATTT---CATAATAAA--AAAATCATCT--ACTCTGTATCTA--GAAGTGAGTGATT-TCGAAATCTTCAAATAGTATTTGAGGTGATAATTTGGAAACTGCCTTCTGTAtgtt
gi|2 : CCATATTCATAAAGCTCCTTAGATTTTCGCTAAGAAAATATCTTAACTCAGTAATATTTTCTTAGTCAAG-ATGAAAACAAATTTTTAACTTA------AGTGGTATTCATAAAACCACTAAGA-CAAATCTTAGTTAAGA-AAACGTATAAGAAAATAATAATTCTT-AGA-TCAAATATTT---CATCTTAAA--AAAA--ACCTTAACTCGGTAACTAAGGAAATCTGGGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGTTTTGAAAATACCTTCTATACTATAATCTACTTTAACTGAGTAATGAAATGTCAATGTGGTATGTGAGCTTGTGTGTAGTGT----------G-TTTGTGTATATATACCTATGTGTGTGTAGGGTATCTGGCTGTGTTTGTGTG-TATGTGTAT-GTAAACTATGTACATGTTAGTCACTCAACTCGTTTTGTGTTTATGTATTTAGATATATATATGTTACTACAACAGTGTACTTCGATGAGAAAC--TGTGTATAGTCTTCTTCCCCTTCTTCTCTTTTTTACTTCTTATTCTTCTCCTT-CTTTTT-TCAGTATTATACTACAAC--TGGAAATGTAAAATCAAACACAGGGGAACGCGATACTCGTGAACTTTATATAGAAAAACAATGAATAGATaa
gi|2 : TGAATTACTTTAAAAATGTCCCTATTAAAATAGTGAAATGATTATAAATGATATTGCCACTGTTTTCTGCCATAATATAAACCGCTGTGatatataaatatattagtgtatctaaatgtattcaaaagttttcgcagtgaattactttaaaaatgtccctattaaaatagtgaaatgattataaatgatattgccactgttttctgccataatataaaccgctgtg
gi|3 : ccatattcataaagctccttagattttcgctaagaaaatatcttaactcagtaatattttcttagtcaagatgaaaacaaatttttaacttaagtggtattcataaaaccactaagacaaatcttagttaagaaaacgtataagaaaataataattcttagatcaaatatttcatcttaaaaaaaaccttaactcggtaactaaggaaatctgggatttccaaatcttaaaatagtatcggaagtgatagttttgaaaataccttctatactataatctactttaactgagtaatgaaatgtcaatgtggtatgtgagcttgtgtgtagtgtgtttgtgtatatatacctatgtgtgtgtagggtatctggctgtgtttgtgtgtatgtgtatgtaaactatgtacatgttagtcactcaactcgttttgtgtttatgtatttagatatatatatgttactacaacagtgtacttcgatgagaaactgtgtatagtcttcttccccttcttctcttttttacttcttattcttctccttcttttttcagtattatactacaactggaaatgtaaaatcaaacacaggggaacgcgatactcgtgaactttatatagaaaaacaatgaatagatatatataaatatattagtgtatctaaatgtattcaaaagttttcgcagATAATCCAGTGTTTCATCGGAACACAACCTCCCGAGGTCATTAGGACTGTGAGAGTCAAACACCCAATAACAGCCACCCAGTTCAATAATTGCTACAGTGCAGCAGTCAACAGTAAGAAAGCAAATCATTGTCACGGAATGCACTGCATCATCCATGCACTGGAATGGACTGGACCATCAAATATACTTCCCAGGCCATAATTTGATATATTTGAAAGTTTAGTT
gi|3 : TAATTTGATATATT----TGAAAGTTTAGTTTATGAGTATCATTTAAAAAA--CATCTTATTGCAAAAATCTGATTCTTTACTGCTATTCAGAtatgagtatcatttaaaaaacatcttattgcaaaaatctgattctttactgctattcagagcgtatcttaaatatttaccatttggaactagtcaaactattttaggtaggcagtctagagagtcttagagggttaatttaaaactttatgactgtggtcctaaaacacatgagtggaattctatttattccacgaaagacatccaaccaattgtaaccaattgtaataatatcaaataatgttaatcaaacattattaattttattcagaagtcaaaattgatatttttggaattgattagctctgtaatcagtagttacattatgtttagtattatatcagtcagtcacttattggtcattagaagggatagccct
gi|3 : ataatccagtgtttcatcggaacacaacctcccgaggtcattaggactgtgagagtcaaacacccaataacagccacccagttcaataattgctacagtgcagcagtcaacagtaagaaagcaaatcattgtcacggaatgcactgcatcatccatgcactggaatggactggaccatcaaatatacttcccaggccaAAAAATCTGATTCTTTACTGCTATTCAGAGCGTATCTTAAATATTTACCATTTGGAACTAGTCAAACTATTTTAGGTAG-GCA-GTCTAGAGAGTCT--TAGAGG-GTTAATTTAAAAgcgtatcttaaatatttaccatttggaactagtcaaactattttaggtaggcagtctagagagtcttagagggttaatttaaaactttatgactgtggtcctaaaacacatgagtggaattctatttattccacgaaagacatccaaccaattgtaaccaattgtaataatatcaaataatgttaatcaaacattattaattttattcagaagtcaaaattgatatttttggaattgattagctctgtaatcagtagttacattatgtttagtattatatcagtcagtcacttattggtcattagaagggatagccct
gi|3 : ataatccagtgtttcatcggaacacaacctcccgaggtcattaggactgtgagagtcaaacacccaataacagccacccagttcaataattgctacagtgcagcagtcaacagtaagaaagcaaatcattgtcacggaatgcactgcatcatccatgcactggaatggactggaccatcaaatatacttcccaggccataatttgatatatttgaaagtttagtttatgagtatcatttaaaaaacatcttattgcGT-AATAATATCAAATAATGTT----AATCAAACATTATTAATTTTATTCAGAAGTCAAAATTGATATTTTTGGAATTGATTAGCTCTGTAATCAGTAGTTACATTATGTTTAGTATTATATCAGTCAGTCACTTAT--TGGTCATTAGAAGGGATAGCCCctttatgactgtggtcctaaaacacatgagtggaattctatttattccacgaaagacatccaaccaattgtaaccaattgtaataatatcaaataatgttaatcaaacattattaattttattcagaagtcaaaattgatatttttggaattgattagctctgtaatcagtagttacattatgtttagtattatatcagtcagtcacttattggtcattagaagggatagccct
gi|4 : ataatccagtgtttcatcggaacacaacctcccgaggtcattaggactgtgagagtcaaacacccaataacagccacccagttcaataattgctacagtgcagcagtcaacagtaagaaagcaaatcattgtcacggaatgcactgcatcatccatgcactggaatggactggaccatcaaatatacttcccaggccataatttgatatatttgaaagtttagtttatgagtatcatttaaaaaacatcttattgcaaaaatctgattctttactgctattcagagcgtatcttaaatatttaccatttggaactagtcaaactattttaggtaggcagtctagagagtcttagagggttaatttaaaactttatgactgtggtcctaaaacacatgagtggaattctatttattccacgaaagacatccaaccaattgtaaccaattTAATCTTGGTGCCGTATTCATAAAGCTTCTTAGATTTTCGCTAAGAAAATATCTTAACTCAGTAATATTTTCTAAGCTAAG-ATGAAAACATTTTTTTAACTTA------AGTGGTATTCATAAAACCACTAAGA-CAAATCTTAGTTAAGA-AAACGTATAAGAAAATAATAATTCAT-AGA-TCAAATATTT---GATCTT-AA--AAAA--ATCTTAACTCGGTAACTAAGGAAGTCTGGGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGTTTGGAAAATACCTTCTATACTATAATCTACTTTAAATGAGTATTACAATGTCAATGTGGTA--TGAGCTTGTGTGTAGTGTCACTCAACTCGTTTTGTGTTTATGTGTTTAGATATATATA-TATATGTTACTGCAACAGTGTA-C-TTTG-ATGAGAAACTGTGTATAt
gi|5 : aaatgttaatttgtttaacaaaaattgttttacatgAAATAATGA-GTCAATCGGGTCAATACACTTAATGGAAAAAGACCAGGAGCCGTATTCCTATAGCTTCTTAGAGTTTCGCTTAGAAAATATCTTAGCTCAGTAATATTTTCTTAGCTAAG-ATAAAAACAATTTTTTAACTTA------AGTGGTATTCATAAAACCAATAAGA-CAAATCTGAGTTAAGA-AAACGTTTAAGAAAATAATAATTCTG-AGA-CCAAATATCT---CATCTTTAA--AAAA--ATCTTAACTCGGTAAATAAGGAAGTCTGGTATT-TCCAAATCTCAAAACAGTATCAGAAGTGATAGTTTGGAAAATACATTCTATACTATAATCTACTTTAAATGAGTATTGAAATGTCAATGTGGTATGTGAGCGTGTGTGTA--GT----------G-TTTGTGTATATATACCTATGTGTGTGTA-GG-GTATAGATATGAAT---TG-A-TATATAT-ATAAATTATATATATATTA
gi|6 : CTTAGACAATACCTTAACTCAATTATATTTTA--AGCTAAG-ATGAAAATAATTTCCTAA--TA------A-TCACATTCAGTGAACCACAAAAA-C--ATCGTAGCTAAAATAAA
gi|6 : aatagccagtaattgttcggaccatgtagtttagtttaaacTAAATTAAAA--AGTTTAACTAGTTAATTATGGATGTCGGGGATTGTCCAT-TCTTAAA-TGGTATCGGAAAAGACAGTTTGTAAAATATTGTTTATttaaaaagtttaactagttaattatggatgtcggggattgtccattcttaaatggtatcggaaaagacagtttgtaaaatattgtttat
gi|7 : aatagccagtaattgttcggaccatgtagtttagtttaaaccttagacaataccttaactcaattatattttaagctaagatgaaaataatttcctaataatcacattcagtgaaccacaaaaacatcgtagctaaaaTACTA-AAC--TGGAAATGTAAAATCAAATACAGGGGAACGCAATACTCGTGAACTTTATTTAGAAAAACAATGA
gi|7 : TGAATTACTTTAAAAATGTCCCTATCAAAATAGTGTTATGATTATAAATGATATTGCCGCTGTTTTCTACCATAATATAAACCGCTGCGnnnnnnnnnnnnnnnnnnnnnnnnnaataattagtctatcttaatgtattcaaaagttttcgcagtgaattactttaaaaatgtccctatcaaaatagtgttatgattataaatgatattgccgctgttttctaccataatataaaccgctgcg
gi|8 : tactaaactggaaatgtaaaatcaaatacaggggaacgcaatactcgtgaactttatttagaaaaacaatgannnnnnnnnnnnnnnnnnnnnnnnnaataattagtctatcttaatgtattcaaaagttttcgcagACTA-AAC--TGGAAATGTAAAATCAAATACAGGGGAACGCAATACTCGTGAACTTTATTTAGAAAAACAATGAATATAT
gi|8 : TGAATTACTTTAAAAATGTCCCTATCAAAATAGTGTTATGATTATAAATGATATTGCCGCTGTTTTCTACCATAATATAAACCGCTGCGatatatatatatataaataattagtctatcttaatgtattcaaaagttttcgcagtgaattactttaaaaatgtccctatcaaaatagtgttatgattataaatgatattgccgctgttttctaccataatataaaccgctgcg
gi|9 : actaaactggaaatgtaaaatcaaatacaggggaacgcaatactcgtgaactttatttagaaaaacaatgaatatatatatatatatatataaataattagtctatcttaatgtattcaaaagttttcgcagCTAGTTTTTAATAGTT-TTTATAGCGTAC---AATTATGTCCCA--TGGAG-TTGTCG--CTATTTT-GTTTGTACACGCCATGACAA-CG--TAGAGTCGATAA---GAAATAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ATAGTCCGCAGTTATTTCATGGAGTTGTCGCTATTTTGTCATGGCAACGTGTCGTTAAGAAATAAGTTATAAAGTTGTTTGTTTTAAAGGATCAA