lowQualScore : 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : 1 11 111111 3333333333333333333 1111111111 1 11 2222222 1 333333 999999999999999999999999999999999999999999999 77777777777777777777 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1111111111111 11111111111111 1 111111 333333333333333333 1111 222222 111 1 111 22222 1
lowQualScore : 5 3 3 77 888888 2222222222222222222 3 555 77777777 44 66666 3333333333 4 4 55 5 2222222 3 44 77777 5 4 4 444444 222222222222222222222222222222222222222222222 8 3 2 66666666666666666666 55 3 6666 55 4 777 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 3 7777777777777 44 66 1 99999999999999 3 3 44 1 88 3 5 3 2 555555 3 333333333333333333 777 6 6666 9 0 2222 3 4 444444 3 7 1 222 4 3 111 11111 5
lowQualScore : . . . .. ...... ................... . ... ........ .. ..... .......... . . .. . ....... . .. ..... . . . ...... ............................................. . . . .................... .. . .... .. . ... ............................................................................................................................................................................................................................................................................................................................................................................................................................................ . ............. .. .. . .............. . . .. . .. . . . . ...... . .................. ... . .... . . .... . . ...... . . . ... . . ... ..... .
lowQualScore : 7 1 1 66 000000 7777777777777777777 1 444 22222222 66 11111 5555555555 5 7 22 1 5555555 6 99 88888 2 4 0 777777 555555555555555555555555555555555555555555555 0 6 2 11111111111111111111 99 5 9999 55 4 000 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 3 3333333333333 66 33 4 33333333333333 3 1 22 2 22 3 6 1 5 000000 1 777777777777777777 222 2 5555 2 4 0000 1 4 999999 5 0 3 999 2 3 777 99999 0
consensus : NAAAAGTCTTGTCCGGTGAACTTAAACA-TGAA-TATCTGAA-CT-AATTGAAAA---CG--G---------AT-AT---A----T---A--TA-A---ATT----------TGGTATTGTTGGAAAGAACAATTCAAAGCC---AAT-AAATGTG-TGA----ATTTTTNAAGAAATTG-AT-T-GT-TAGTTTTAT--------------ACAAAAGTGT-----------GTGTTTA---AAAA-ACTGACTGTGTTTTTGAAAGT---TACA-CGA--GCAT-G-TTCTAATAAGTAGCAC---CAGCA-GTTTGTA---TGTA----AA--AT-T-T--GTT-----------A-------N----TG----T-GT--C-C------CC-T------TG-----T--G--C----------CT-G-TGCAAAA-----A--TTGAGCCG--GA--AT-T-CT----T--GCA--CA-G--GCTTGCAA----GG-TCTAT-GCGCAGACGATGT--AC----TGCACT-GAGCAA--------N-----N------AT---CA---C---G-G---A--C---AC-ACCCGATA------C-------TNA--A-A----TT-------C-------A--A-----ACTGC-------TGGTGCT---N------------CTN---AT-TAGAACATG--C---TT-GTGTAACTT-TCAAAAAC-ACAGT--GTG-T-TTT-------AA-ACAC------------CACTTT--TGATAAAACTAACCAATCAATTTCTT--CAAAAAT-----TCA-CACA-TTTAT--TGGCTTTGAATTGTTCTT-TCCA-ACAATACCAAAT----TTAT-AT-------T--ATA----TC--CG-T----TT-CAAN-T-A-GTTCAGATAT-T--CGTGTTTAAGTTCACCGGACAA-G-ACTTTTGGCC--TTGA--GTATATTTCGTAT
Reference ( gi|1 ) : AAAAAGTCTTGTCTGGTGAACTTACACA-TGAT-TATCTGAA-AT-ATTTGAATA---CA--G---------AT-AT---A----T---A--TA-A---ATT----------TGGTATTGATGGAAAGGACCATTCAATGTC---AAT-AAATGTG-TGA----ATTTTTTAAGTAATTG-AT-T-GTATAGTTTTAT--------------ATAGAAATAT-----------GTGTTTAC--AAAA-ACTGACTGTGTTTTTGAAAGT---AACA-TGA--GTAT-A-TTCTAATAGGTAGCAC---TAGCA-ATTTGCA---TGTA----AA--AT-T-T--GTT-----------A-------C----TG----T-GT--C-C------CC-C------TG-----T--G--C----------CT-G-TGCAAAA-----A--TTGAGCCG--GG--AT-T-CT----T--GCA--CA-G--GCTTGCAA----GG-TTTAT-GTGCAGACGATGT--AC----TGCACT-GAGCAA--------A-----C------AT---CA---T---G-G---A--C---AC-ACCAGATA------C-------TTA--A-A----TT-------T-------A--A-----ACTTC-------TGGTGCT---T------------TTA---AT-TAGAACATG-ACAG-TT-GTGTAACTT-TAAAAAAC-AGAGTATGTG-TATTT-------AA-ACAC------------CACTTT--TGATAAAACTAACCAATCAATTTCTT--CGAAGAT-----TCA-CACA-TTTAT--TGGCTTTGGATTGTTCTT-TCGA-ATAATACCAAAT----TTAT-AT-------T--ATA----TC--TG-T----TT-CAAA-T-A-GTTCAAATAT-T--GGTGTTAAAGTTCACCGGACAA-A-ATTTATGGCT--TTAA--ATATATTTCATAT
gi|2 : AAAAGTCGTGTCCGGTGAATCTAAACA-TA--------GAACGT-ATT-AAAGA---CG--G---------AT-GT---A----T---A--TA-ATATATT----------TGGTGTTGTTGGAAAGAACAATTCATTGCT---AAT-AAATGTG-TGA----AATATAGAAAAAATTG-AT-G-GC-TAGTTTTAT---------------CAAAAGTGTTGTTTTTTTGTGTGTTTTTTTAAAA-AATGGCAATATTCTCGAAAGT---TATA-C------AT-G-TTCTAATAAGTAGCAC---CAGCA-GTTTGTA---TTTT----AA--CT-T-TTAGTA-----------T-------C----TGG---T-GT--C-T------C-------------------A--T----------CC-G-TATAAA----------TCAGTCG--GA--ATCT-TT----T--GT---------TTTTGCAA----TG-TCTAT-ACGCAGACCATGT--AC----TGCATT-AAGCAA--------TTTTTTC------AT---CA-------------ATTC---AC-AACCGAAA------C-------TAA--C-A----TT-------T-------ACAA-----ACTACAAATTGTTAGTGCT---G------------CTT---AT-CAGAACATG----------TGCAACCT-TCAAAATC-ACAGTAAGTG-C-TTT-------AA-ACAC------------AAGTTC--TGGTAGCACTAACCAATACATTTATT-----AAA--------A-CACA-TTTAA--TGGCTTTGAATTGTTCTT-TCAA-ACAAAACTAAGT----TCAT-GTA------T--A-A----TCAATG-CAATATC-CCAT-T-A-GTTCAGTTAT-----GT-TTAAAG-TCACCTGAAAA-G-ACTTTTGGTA--TTGA--GT
gi|2 : AAAAGTCTTTTCAGGTGACTTTAAACA-TAA-----CTGAA-CT-AATGGGATATTGCATTG---------ATTAT---A----C---A--TG-A---ACT----------TAGTTTTGTTTGAAAGAACAATTCAAAGCC---ATT-AAATGTG-----------TTTTAA-TAAATGTAT-T-GGTTAGTGCTAC---------------CAGAACT-T-----------GTGTTTA---AAGC-ACTTACTGTGATTTTGAAGGT--------TGC--ACAT-G-TTCTGATAAGCAGCAC---TAACA-ATTTGTAGTTTGTA----AA-------T--GTT-----------A-------------G----T--T--T-C------GG-T------TG-----T--GA-A----------TT-GATGAAAAA-----A--TTG----------------CT----TA-ATG--CA-G-----TACAT----GG-TCTGC-GTATAGAC-------AT----TGCAA--AAACAA--------AAGATTCCGACTGATTTATA---C---G-G---A--TGAGAC-ACCAGATA------C-------TAA--A-A----GT-------TAAAATACA--A-----ACTGC-------TGGTGCT---A------------CTT---AT-TAGAACA---------T-GTATAACTT-T------CGAGAATAT-TGCCATTTTTTAAAAAA-ACACACAAAAAAACAACACTTT--TGATAAAACTAGCC-ATCAATTTTTT--CTATATT-----TCA-CACA-TTTAT--TAGCAATGAATTGTTCTT-TCCA-ACAACACCAAATATA-TTAT-A--------T--ACA----TC--CG-T----CT-TTAA-T-ACGTTC---TAT-----GT-TTAGA-TTCACCGGACAC-G-ACTTTTGGCC--TTGC--GTATATggccttgcgtatatat
gi|5 : actcaataccAAAAGTATTATCCGGAGAACTTAAACA-TGAC-TATCTGAA-CT-AAATGAAAA---CG--G---------AT-AT---A----T---AATTATA---ATTATATATAATATTGTATTGATGGGAAAAA--ATTAAA-GCT---AAT-TAATGTG-TGA----ATTCTTAAAGAAATat
gi|11 : ggccAAAAGTCTTGTCCGCTGAACTTAAACG-GGAA-CATCTGAC-TT-AATTGAAAA---CA--G---------AT-AT---A----T---A--TA-A---ATT----------TGGTATTGTTGGTAAGAA-CATTcaaaagtggcgtttagaatttgacagttacactaagccttgttctataagtaacactagcagtttgtatgttagattttaaaatggggtgtgtccctagtgagcgtcgctcaatctgtacagaatcgctgctcaatttttgcactggtttacaaggtgtactaacacaatgttatactg
gi|15 : ttaatattgatagatgtcagacgAAAAGTATTGTCCGATGAACTTAAACA-T-ATATATCTCAG-CT-AATTGAAAA---CA--GAAACGGATAAT-AT---A----T---A--TA-T---ATgactaatatagatataagtccttggtaagaacaatttaaatccgac
gi|18 : acaatatagatataagcaggaccAAAAGTCTTGTTCAGTGAATTTTAACA-TGAA-TAGCTTAA-at
gi|10 : AAAGTTGTGTACGGTGAATTTTAACA-TGAA-CATCTGAA-GT-AATTGAA----------------------------------------------ATT----------TGGCATTGTTAGAAAGAACAATTCAAAACC---AAT-CAATGTG-AGATTTTTTTTTTTGAGAAATTG-ATCT-GT-TAGTTTTAT--------------CCA-AAGTG------------GTGTTTA---AAAA---------TGTTTTTgtccttgagtata
gi|3 : taAATGTATTGTCCGGTGAACGCAAACA-CGAA-TACCTGAA-CT-GATTGAAAA---CG--G---------AC-AT---A----T---A--CA-A---AGT----------TGGTTTTcggccttgtgta
gi|13 : taatggaatgcacctgaccgcccacatttggtatcgttggaaagaacaatcgaaagctaatgcatttgtaaatatttgacgaaattgaaggtttattttcataataattggtgtttaaaagatacggactatgatttgaaagttacacatgttctatttaacagcatcagtagtttgaaatgtctatgcgctgacaatgtgctgcactgagcagcgctaacggggaacacacccgatattcaaattgagcatccaaattacagacgctacttattgatgcagattgtgtaattttcaaaaacaccacctttgataaaactaacaaatcaattttttaaataaaatAAAATCTTATCCAGTGAACTTAAACA-CAAA-TATCTGCA-CT-AATTGAAAA---CA--GATACATAA-AT-AT---A----T---A--TA-A---ATT----------TGATATTGTTGGTAAGAATAA-TAAAAATCA--AAT-AAATGcagagttaattaaatgtttcgta
gi|16 : cttAAAGTCTTGTCCAGTGAACTTACACA-TGAC-TTTTTGAA-CT-AATTGAAAA---CG--G---------AT-AT---attga
gi|9 : acataaatgtatagtgaaggccgAAGTATTGTCTGGTGATCTTAAAAAATGTA-TATCTGAA-CT-CGTTGAAAA---TG--A---------AT-TT---A----T---A--TA-T---GAT----------TAGTACTGCAGGAAAGAACAACT-GATAGCTATAAT-AAATGTG-TGA----ATTTTTGAAGAAATC--AT-T-TT---GTTTTAT---------------CAAGAGT-T-----------GTGTTTGA--AAA
gi|4 : TCTTGTCCTGTGATTTTAAATT-TGAG-TATCTGAA-CTCATTTGAA-A---CG--G---------AT-AA---G----T---A--TA-A---ATT----------TGATATTATTGGAAAGAACAATTTGAAGCT---AATAAAATGTG-TGA----ATTTTGGAAAAAAAAT-AT-T-GGTTAGTTTTAT---------------TAACAGTG------------GTGTTTGA--AATA-ACAGATTGTATTCTTGAAAAT---TACA-CAA--G-A-----TCTAATGAGTAGCAC---TAACA-GTTTGTG---TG-----------T-T-C--ATT-----------T-------C----TG------------------------------G-----T--A--T----------CG-GATACCAAA-----ATTTTGAA--G--AA--AT-TGCT----C--G------------TTGCAGTACCGG-TTCATAATAC--ACGA-GT--AT----TGAAC---AACGT--------A-----C------AC---TG---G---G-A---A--C---AC-GCCAGATA------C-------TAA--A-A----T---------------------------CGC-------TGGTA------------------TTA---AT-CATAAGAT---CA--TT--TGCAACTT-Tgtggcctgcagtatataa
gi|14 : aatattttttaaaaactgactgtgattcagTTAAACA-TGAA-TATTTGAA-GT-AATTGGAAA---CG--G---------AT-AT---ATATAT---A--TA-A---ATT----------AGGTATTGTTGGAA--GATAATTAAAAACC---AAT-TAATGTGATGA----TTTTTTTAAGAAATTG-gatttgaccttgggtat
gi|12 : -TATCTCAA-CT-GATTGAAAA---CG--G---------AC-ATGGAA----TGCAA--TT-A---GTT----------TGGT-----TGGAAAAAATAATTCAAAGTC---AAT-AAATGT----------TT------GTAATTG-AT-TAGT-TAGTTTAAT---------------CAAAAGTA--------------GTATAT--TAAA-AC
gi|3 : gt---ATT----------TGGTATCGTTGGAAAGAACAATCGAAAGCT---AAT-GCATTTG-TAA----ATATTTGACGAAATTG-AA-G-GTTTATTTTCAT--------------A-ATAATTG------------GTGTTTAA--AAGATACGGACTATG-ATTTGAAAGT---TACA-------CAT-G-TTCTATTTAACAGCAT---CAGTA-GTTTGt
gi|17 : taatggaatgcacctgaccgcccacT----------TAGTATTATTAGAAACAACAATTCAAAAAC---AAT-AAATGTG-TGA----AT-TTTTAAGGAAaaatgtctatgcgctgacaatgtgctgcactgagcagcgctaacggggaacacacccgatattcaaattgagcatccaaattacagacgctacttattgatgcagattgtgtaattttcaaaaacaccacctttgataaaactaacaaatcaattttttaaataaaataaaaccaactttgtatatgtccgttttcaatcagttcaggtattcgtgtttgcgttcaccggacaatacattcagagttaattaaatgtttcgta
gi|7 : t----ATTTTTGAAGAATTTG-AT-TTGT-TAGTTTTAT--------------A-----ATAT-----------A------------------ACTGTGTTTTTGAAAGT---TAC-------GCAT-G-TTCTTATAACCAGCAC---CATCA-GTTTACA---TGTT----AA--ACGT-T--GTT-----------A-------A----TGGGTGT-GT--C-T------CG-TGAGAGTTGATAAAT--A--T----------CT-G-GGCAAAA-----G----GAGC-A--GA--AT-T-CTGCTCTCGGCT--CATG--GTTTGCAA----GG-TCTAT-GCGCAGACGATTC--AC----TACATT-GAGCAA--------T-----G------AT---CAAAGG---G-G---A--C---ATGACC-GATA------C--------TA--A-A----CT-------T-------A--A-----ACT-----------GTGCG---C------------TGA---ACGTAAAAC-TG-Ataatactaaa
gi|6 : aattcaaagctaaaagttTTTTTAAA-AGTTG-AT-AAGTA-AGTTTTATCGAAAGTAAGTTTCATCGAAAGAA-----------GTTATTA---AAAA-ACTGACTGTGTTTTTGAAAGT---TGCA---A----AC-G-TTCTAATTAGTACTAC---TAGCATATTTA------GTACCGGAA--GT-G-T--GTTTTG--------A-------A----AG----C-GT--T-G------CT-A------AA-----T--G--C----------CT-A-TGCGAAACCGTGATTTTGTTCTA--GGTCATCT-TT----T--GCA--CA-G--ACATGT-A----GG-TCTAA-ATGCAGACAGTCTTCACTCAGTGCACT-GGGCAA--------C-----G------CT---CA---CGGGG-G---A--C---AC-ACCCAATA------CAAACAATTTA--C-A----TG-------C-------A--A-----ACTTC-------TGG---T---T------------TTACATAT-TGGAA
gi|8 : AGTTTTATC-------------ACAAAAGTA------------GTGTTT-T--AAAATACCGTCTG-GTTTTTGTAGGC---GACA-TAATCGTTC-AGTTTCAATAACCATCAC---CAACA-GTTTCCA---TGTA----AA--AT-T-T--GCTCAGGGCAGGACA-------T----CG----TCGT--CACATAAAACC-T------TG-----CAAG--C----------CT-G-TTCAAGA-----A--TTCCGCCT--TA--AT-T-TG----T--GCA--AA-G--GC
gi|4 : acatgacattttttaaagttacacatacaacagtttgtatgtataattttggttttgggtgatcgccgcAATAT--------------TTTTT--AAAA-ACTGACTGTGATTCAGAAAGTTGCAA-A-TGA----------TCTTATGATTAATAC---CAGCG-ATTT
gi|5 : TTTGACAGT---TACACTAA--GCCTTG-TTCTA-TAAGTAACAC---TAGCA-GTTTGTA---TGTT----AG--AT-T-----TT-----------AAAATGGGG----TG----T-GT--C-C------CTAG------TG-----A--G--CGTCGCTCAATCT-G-TAC-AGA-----A--TC--GCTGCTCA--AT-T-TT----T--GCA--CT-G--GTTTACAA----GG-TGTAtagtatctggcgtgttcccagtgtacgttgttcaatactcgtgtattatgaaccggtactgcaacgagcaatttcttcaaaattttggtatccgataccagaaatgaacacacaaactgttagtgctactcattagatcttgtgtaattttcaagaatacaatctgttatttcaaacaccactgttaataaaactaaccaatattttttttccaaaattcacacattttattagcttcaaattgttctttccaataatatcaaatttatacttatccgtttcaaatgagttcagatactcaaatttaaaatcacaggacaagagatttgaccttgggtat
gi|8 : ggccaaaagtattatccggagaacttaaacatgactatctgaactaaatgaaaacggatatataattataattatatataatattgtattgatgggaaaaaattaaagctaattaatgtgtgaattcttaaagaaatcaaaagtggcgtttagaaACA-TGA---CAT-T-TTTTAA-AGTTA-CACATACAACA-GTTTGTA---TGTA----TA--AT-T-TTGGTT-------------------T----TG----G-GTGAT-C------GC-C-------G-----C--G--C----------CT-T-TGCACAA-----A--TTAAGGCG--GA--AT-T-CT----T--GAA--CA-G--GCTTGCAA----GGTTTTAT-GTGACGACGATGT--CC----TGCCCT-GAGCAA--------A-----T------TTTA-CA---T---G-G----------------------------------------------------------------A--A-----ACTGT-------TGGTGAT---G------------GTT---AT-TGAAAC-TGAACGA-TT-ATGTCGCCTACAAAAACC-AG---ACG-G-TATTTTA-----AA-ACAC------------TACTTTTGTGATAAAACTctaacacaatgttatactg
gi|6 : -TTCCAATATGTAAAAC---CAGAA-GTTTGCA---TGTA----AATTGT-T-T--G-T-----------A-------TTGGGTG----T-GT--C-C------CC-CG-----TGAGCGTT--G--C----------CCAG-TGC---------A--CTGAGTGA--AG--AC-T-GTC---T--GCATTTA-G--ACCTACA--------TGTCT-GTGCAAAAGATG---AC--------CTAGAACAA--------A------------AT---CA---C---G-GTT-T--C---GC-A-TAGGCA------T-------TTAGCA-ACGCTTT-------C-------A--AAACACACTTC-------CGGTACTAAATATGCTAGTAGTACTA---AT-TAGAAC-------G-TT--TGCAACTT-TCAAAAAC-ACAGTCAGTT-T-TTT-------AA-TAAC------------TTCTTT--CGATGAAACTTAC
gi|5 : tttttaaaagttgataagtaagttttatcgaaa---TATA----AC--AT-TGT--GTT-----------A-------------G----T-A---C-A------CC-T------TG-----T--AAAC----------CA-G-TGCAAAA-----A--TTGAGCAG--CG--AT-T-C-----T--GTA--CA-G--A-TTG--A----G---------------CGACG----C----T-CACT--AG--------------------------------------G-G---A--C---AC-ACCCCATT------T-------TAA--A-A----TC-------TAACATACA--A-----ACTGC-------TAGTGTTA--C------------TTA------TAGAACAAG-GC---TTAGTGTAACTG-TCAAA--------T--------TCT-------AA-ACGC------------CACTTT--TG-----------------ATTTCTT--TAAGAAT-----TCA-CACA-TTAAT--TAGCTTTAATTTTTTCCCATCAATACAATATTATATATAATTATAATTA-----T--ATA----TC--CGTT----TT-CATT-T-A-GTTCAGATAG-T--CATGTTTAAGTTCTCCGGATAA-T-ACTTTTGGC
gi|3 : g--GCAT-CA-GTAGTTTGAAA----TG-TCTAT-GCGCTGACAATGT--GC----TGCACT-GAGCAG--------C-----G------CT---AA---C---G-GGGAA--C---AC-ACCCGATA------T-------TCA--A-A----TTGAGCATCC-------A--A-----ATTAC-------AGACGCT---A------------CTT---AT-TG----ATG--CAGATT-GTGTAATTT-TCAAAA-----------------------------ACAC------------CACCTT--TGATAAAACTAACAAATCAATTTTTT--ctg
gi|4 : taatggaatgcacctgaccgcccacatttggtatcgttggaaagaacaatcgaaagctaatgcatttgtaaatatttgacgaaattgaaggtttattttcataataattggtgtttaaaagatacggactatgatttgaaagttacacatgttctatttaacaGT--AC----TGCAAC-GAGCAATTTCTTCAA-----A------AT---TT---T---G-GT--A--TCCGAT-ACCAGA-A------A-------TGA--ACA----CA-------C-------A--A-----ACTGT-------TAGTGCT---A------------CTC---AT-TAGATC---------TT-GTGTAATTT-TCAAGAAT-ACAATCTGT--TATTTC------AA-ACAC------------CACTGT--TAATAAAACTAACCAATATTTTTTTT--CCAAAAT-----TCA-CACATTTTAT--TAGCTTCAAATTGTTCTT-TCCA-ATAATATCAAAT----TTAT-AC-------T---TA----TC--CG-T----TT-CAAA-TGA-GTTCAGATAC-TCAAAT-TTAAAA-TCACAGGACAA-G-AGATTTGACC--TTGG--GTATaaataaaataaaaccaactttgtatatgtccgttttcaatcagttcaggtattcgtgtttgcgttcaccggacaatacattcagagttaattaaatgtttcgta
gi|7 : aatattttttaaaaactgactgtgattcagaaagttgcaaatgatcttatgattaataccagcgattttagtatctggcgtgttcccagtgtacgttgttcaatactcgtgtattatgaaccgT---CA---C---GAG---A--C---AC-ACCCATTAACAACGT-------TTA--ACA----TG-------T-------A--A-----ACTGA-------TGGTGCT---G------------GTT---AT-AAGAACATG----------CGTAACTT-TCAAAAAC-ACAGT---TA-TATT-------------------------------------ATAAAACTAACAAATCAAATTCTT--CAAAAAT-------A--ACT-TTTA-----GCTTTGAATT
gi|3 : ----TT-------C-------A--A-----ACTAC-------TGATGCT---G------------TTA---AA-TAGAACATG----------TGTAACTT-TCAAAT-C-ATAGTCCGTA-TCTTTT------AA-ACAC------------CAATTA--TTATGAAAATAAACCTTCAATTTCGT--CAAATAT-----TTA-CAAA-TGCAT--TAGCTTTCGATTGTTCTT-TCCA-ACGATACCAAAT----gagttgataaatatctgggcaaaaggagcagaattctgctctcggctcatggtttgcaaggtctatgcgcagacgattcactacattgagcaatgatcaaaggggacatgaccgatactaaacttaaactgtgcgctgaacgtaaaactga
gi|10 : taatggaatgcacctgaccgcccac-TAAAAAAC-A----------TTTTT-------AA-ACAC------------CACTTT--GGATAAAACTAACAGATCAATTTCT---CAAAAAAAAAAATCT-CACA-TTGAT--TGGTTTTGAATTGTTCTT-TCTA-ACAATGCCAAA------------------------------------T----TT-CAAT-T-A-CTTCAGATGT-T--CATGTTAAAATTCACCGTACAC-A-ACTTTCGGCC--TTatgtctatgcgctgacaatgtgctgcactgagcagcgctaacggggaacacacccgatattcaaattgagcatccaaattacagacgctacttattgatgcagattgtgtaattttcaaaaacaccacctttgataaaactaacaaatcaattttttaaataaaataaaaccaactttgtatatgtccgttttcaatcagttcaggtattcgtgtttgcgttcaccggacaatacattcagagttaattaaatgtttcgta
gi|12 : GTG-T-TTT-------AATATAC------------TACTTT--TGATTAAACTAACTAATCAATT--------A----------CA-AACA-TTTAT--TGACTTTGAATTATTTTT-TCCA-ACCAAACTAA------TTGC-AT-------TCCATG----TC--CG-T----TT-TCAA-TCA-GTTGAGATAT-gtgta
gi|9 : TTC-------AA-ACAC------------AACTCT--TGATAAAAC-AA--AAT-GATTTCTT--CAAAAAT-----TCA-CACA-TTTATTATAGCTATCAGTTGTTCTT-TCCT-GCAGTACTAA------TCAT-A--------T--ATAAAT-TC--AT-T----TT-CAAC-G-A-GTTCAGATATAC--ATTTTTTAAGATCACCAGACAA-T-ACTTGTGGCC--TGCA--GTATAT
gi|14 : ttCAATTTCTT--AAAAAAA-----TCATCACA-TTAAT--TGGTTTTTAATTAT-CTT-CC-A-ACAATACCTAAT----TTAT-ATATA----T--ATA----TC--CG-T----TT-CCAATT-A-CTTCAAATAT-T--CATGTTTAAaa
gi|17 : TTTCCT--TAAAAAT-----TCA-CACA-TTTAT--TGTTTTTGAATTGTTGTT-TCTA-ATAATACTAA------TAAT-AC-------T--A
gi|11 : TTCTTACCAAGGAC-----TTA-TATC-TATAT--TAGTC----AATGTTCTT-ACCA-ACAATACCAAAT----TTAT-A--------T--ATA----TC--TGTT----TT-CAAT-T-A-AGTCAGATGT-T--CCCGTTTAAGTTCAGCGGACAA-G-ACTTaa
gi|13 : ttaatattgatagatgtcagacgaaCA-TTTAT--TTGATTTTTATTATTCTT-ACCA-ACAATATCAAAT----TTAT-ATATATTTAT--GTA----TC--TG-T----TTTCAAT-T-A-GTGCAGATAT-T--TGTGTTTAAGTTCACTGGATAA-G-ATTTcaatttaaatccgac
gi|3 : cttaA-ATAAAACCAACT----TTGT-AT----------ATG----TC--CG-T----TT-TCAA-TCA-GTTCAGGTAT-T--CGTGTTTGCGTTCACCGGACAATACATTCAGAGTTAATTAA----ATGTTTCGTAattga
gi|15 : taatggaatgcacctgaccgcccacatttggtatcgttggaaagaacaatcgaaagctaatgcatttgtaaatatttgacgaaattgaaggtttattttcataataattggtgtttaaaagatacggactatgatttgaaagttacacatgttctatttaacagcatcagtagtttgaaatgtctatgcgctgacaatgtgctgcactgagcagcgctaacggggaacacacccgatattcaaattgagcatccaaattacagacgctacttattgatgcagattgtgtaattttcaaaaacaccacctttgataaaactaacaaatcaattttttaaataaAT----ATAT-AT-------T--ATCCGTTTC--TG-T----TTTCAAT-T-A-GCTGAGATAT-A--TATGTTTAAGTTCATCGGACAA-T-ACTTTTGGTC--CTGC--TTATATCT-ATAT
gi|16 : aca--ATA----TC--CG-T----TTTCAAT-T-A-GTTCAAAAAG-T--CATGTGTAAGTTCACTGGACAA-G-ACTTTCGGCC--TTCACTATACATTTatatat
gi|18 : acatTAT-T--CATGTTAAAATTCACTGAACAA-G-ACTTTTGTCC--TTGA--GTATA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111
lowQualScore : 33333333 111 22 0000000000000000000000000000000000000000000000000 22222222 111 111111111111 777777777777777777777777777777777 111111 22222222 222222222222222222222222 1111 7777777777777777777777777777777777777777777777777777777777 444444444444444 44444444444444444444 111111 444444444444444444444444444444444444444 1111111 11111
lowQualScore : 1 1 88888888 111 0 1 111 5 5 5 777 0 55 8 8888888888888888888888888888888888888888888888888 8 5 99999999 1 111 6 6 222222222222 333333333333333333333333333333333 77 111111 33333333 99 77 111111111111111111111111 11 0000 5 5 0 999999999 6666666666666666666666666666666666666666666666666666666666 1 1 2 222222222222222 88888888888888888888 666 3 55 44 44 33 4 888888 55 66 2 4 4 1 0 333333333333333333333333333333333333333 4 3333333 1 4 11111 3 0 66
lowQualScore : . . ........ ... . . ... . . . ... . .. . ................................................. . . ........ . ... . . ............ ................................. .. ...... ........ .. .. ........................ .. .... . . . ......... .......................................................... . . . ............... .................... ... . .. .. .. .. . ...... .. .. . . . . . ....................................... . ....... . . ..... . . ..
lowQualScore : 8 0 33333333 777 1 4 111 4 0 7 999 2 00 0 4444444444444444444444444444444444444444444444444 0 0 88888888 8 777 7 7 444444444444 444444444444444444444444444444444 99 999999 11111111 66 99 666666666666666666666666 55 6666 0 4 2 888888888 5555555555555555555555555555555555555555555555555555555555 0 0 0 000000000000000 44444444444444444444 444 6 55 00 88 66 4 888888 33 11 9 4 4 0 9 000000000000000000000000000000000000000 0 0000000 0 0 22222 2 1 11
consensus : NAAAAGTCTTGTCCGGTGAACTTAAACATGAATATCTGAACTAATTGAAAACGG--------ATATATATAA---ATTTGGTATTGTTGGAAAGAACAATTCAAAGCCAAT-AAATGTG-TGAATTTTT--NAAGAAATTGATT-GT-TAGTTTTATACAAAAGTGT-----------GT-------------GTT--T----A-AAA-AACTGACTGTGTTTTTGAAAGTTACACGAGCATGTTCTAATAAGTAGCAC---CAGCA-GTTT-GTATGTNAAAT-T-T--GTT---ANTG----TG-TCGCCT------NG-----TG--CCT-G-T--GCAAAA-----A--TTGAGCCGGG--AT-T-CT----T--GCA-CA-G--GCTTGCAA----GG-TCTATGCGCAGACGATGT--AC----TGCACTGAGCAACG--------NTCA---C---GG---A--CACACCCGATACTAA-AATT-A--A----CAAACTGCTGGTGCTACTTATTAGAAC---ATG-C---TT-GTGTAACTTTCAAAAAC---ACAGT--GTGT---T---TTAA-ACACCACTTT--TGATAAAACTAACCAATCAATTTCTTCAA-AAAT-----TCACACATTT-AT--TGGCTTTGAAT-TGTTC-TTTCCAACAATACCAAATT-TATAT-----------T--AT-ATCCG-T------TT-C-------AATT-AGTTCAGATATTCA-TGTTTAAGTTCACCGGACAANACTTTCGGCCTTGAGT--ATATTTCGTAT
Reference ( family-5668 ) : NAAAAGTCTTGTCCGGTGAACTTAAACATGAATATCTGAACTAATTGAAAACGG--------ATATATATAA---ATTTGGTATTGTTGGAAAGAACAATTCAAAGCCAAT-AAATGTG-TGAATTTTT--NAAGAAATTGATT-GT-TAGTTTTATACAAAAGTGT-----------GT-------------GTT--T----A-AAA-AACTGACTGTGTTTTTGAAAGTTACACGAGCATGTTCTAATAAGTAGCAC---CAGCA-GTTT-GTATGTAAAAT-T-T--GTT---ANTG----TG-TCCCCT------TG-----TG--CCT-G-T--GCAAAA-----A--TTGAGCCGGA--AT-T-CT----T--GCA-CA-G--GCTTGCAA----GG-TCTATGCGCAGACGATGT--AC----TGCACTGAGCAANN--------ATCA---C---GG---A--CACACCCGATACTNA-AATT---------CAAACTGCTGGTGCTNCTNATTAGAAC---ATG-C---TT-GTGTAACTTTCAAAAAC---ACAGT--GTGT---T---TTAA-ACACCACTTT--TGATAAAACTAACCAATCAATTTCTTCAA-AAAT-----TCACACATTT-AT--TGGCTTTGAAT-TGTTC-TTTCCAACAATACCAAATT-TATAT-----------T--AT-ATCCG-T------TT-C-------AANT-AGTTCAGATATTCG-TGTTTAAGTTCACCGGACAAGACTTTTGGCCTTGAGT--ATATTTCGTAT
gi|1 : AAAAGTCTTGTCTGGTGAACTTACACATGATTATCTGAAATATTTGAATACAG--------ATATATATAA---ATTTGGTATTGATGGAAAGGACCATTCAATGTCAAT-AAATGTG-TGAATTTTT--TAAGTAATTGATT-GTATAGTTTTATATAGAAATAT-----------GT-------------GTT--T----ACAAA-AACTGACTGTGTTTTTGAAAGTAACATGAGTATATTCTAATAGGTAGCAC---TAGCA-ATTT-GCATGTAAAAT-T-T--GTT---ACTG----TG-TCCCCC------TG-----TG--CCT-G-T--GCAAAA-----A--TTGAGCCGGG--AT-T-CT----T--GCA-CA-G--GCTTGCAA----GG-TTTATGTGCAGACGATGT--AC----TGCACTGAGCAAAC--------ATCA---T---GG---A--CACACCAGATACTTA-AATT---------TAAACTTCTGGTGCTTTTAATTAGAAC---ATGACAG-TT-GTGTAACTTTAAAAAAC---AGAGT--ATGTGTAT---TTAA-ACACCACTTT--TGATAAAACTAACCAATCAATTTCTTCGA-AGAT-----TCACACATTT-AT--TGGCTTTGGAT-TGTTC-TTTCGAATAATACCAAATT-TATAT-----------T--AT-ATCTG-T------TT-C-------AAAT-AGTTCAAATATTGG-TGTTAAAGTTCACCGGACAAAATTTATGGCTTTAAAT--ATATTTCATAT
gi|10 : aAAAAAC---AT--------T---T---TTAA-ACACCACTTT--GGATAAAACTAACAGATCAATTTCT-CAA-AAAAAAAAATCTCACATTG-AT--TGGTTTTGAAT-TGTTC-TTTCTAACAATGCCAAA-------------------------------T------TT-C-------AATT-ACTTCAGATGTTCA-TGTTAAAATTCACCGTACACAACTTTCGGCCTTGTGT--
gi|11 : taAAAAGTCTTGTCCGCTGAACTTAAACGGGAACATCTGACTTAATTGAAAACAG--------ATATATATAA---ATTTGGTATTGTTGGTAAGAAC-ATTGA---CTAAT-ATAGATA-TAAGTCCTTGGTAAGAA
gi|12 : ttaatattgatagatgtcagacg--GTGT---T---TTAATATACTACTTT--TGATTAAACTAACTAATCAATT----------A-------CAAACATTT-AT--TGACTTTGAAT-TATTT-TTTCCAACCAAACTAA--T-TGCAT-----------TCCAT-GTCCGTT------TT-C-------AATC-AGTTGAGATATcaatttaaatccgac
gi|13 : AAAATCTTATCCAGTGAACTTAAACACAAATATCTGCACTAATTGAAAACAGATACATAAATATATATAA---ATTTGATATTGTTGGTAAGAATAATAAAAATCAAAT-AAATG
gi|14 : cttTTAAACATGAATATTTGAAGTAATTGGAAACGGATAT----ATATATATAA---ATTAGGTATTGTTGGAA--GATAATTAAAAACCAAT-TAATGTGATGATTTTTT--TAAGAAATTGattga
gi|15 : ATA-TATAT-----------T--AT---CCG-T------TT-CTGTTTTCAATT-AGCTGAGATATATA-TGTTTAAGTTCATCGGACAATACTTTTGGTCCTGCTT--ATATCT
gi|16 : acaatat--AT-ATCCG-T------TTTC-------AATT-AGTTCAAAAAGTCA-TGTGTAAGTTCACTGGACAAGACTTTCGGCCTTCACT--ATAatatat
gi|17 : acataaatgTTAGTATTATTAGAAACAACAATTCAAAAACAAT-AAATGTG-TGAATTTTT--AAGGAAA
gi|18 : TTAAGCTATTCA-TGTTAAAATTCACTGAACAAGACTTTTGTCCTTGAGT--ATAtaatactaaa
gi|2 : AAAAGTCGTGTCCGGTGAATCTAAACATA-------GAACGTATTAAAGACGG--------ATGTATATAATATATTTGGTGTTGTTGGAAAGAACAATTCATTGCTAAT-AAATGTG-TGAAATATA--GAAAAAATTGATG-GC-TAGTTTTAT-CAAAAGTGTTGTTTTTTTGTGT-------------GTT--TTTTTA-AAA-AA-TGGCAATATTCTCGAAAGTTATAC----ATGTTCTAATAAGTAGCAC---CAGCA-GTTT-GTATTTTAACT-T-T----T---AGTA----T------CT------GG-----TG--TCTCA-TCCGTATAA-----A--TC-AGTCGGA--ATCT-TT----T--GT--------TTTTGCAA----TG-TCTATACGCAGACCATGT--AC----TGCATTAAGCAATTTTTTC---ATCA------------ATTCACAACCGAAACTAA-CATTTACAAACTACAAATTGTTAGTGCTGCTTATCAGAAC---ATG---------TGCAACCTTCAAAATC---ACAGTAAGTGC---T---TTAA-ACACAAGTTC--TGGTAGCACTAACCAATACATTTATT----AAA--------ACACATTT-AA--TGGCTTTGAAT-TGTTC-TTTCAAACAAAACTAAGTT-CATG------------T--ATAATCAA-TGCAATATC-C-------CATT-AGTTCAGTTA-----TGTTTAAAGTCACCTGAAAAGACTTTTGGTATTGAGT--
gi|3 : TT---------CAAACTACTGATGCTGTTAAATAGAAC---ATG---------TGTAACTTTCAAAT-C---ATAGTCCGTATCT-T---TTAA-ACACCAATTA--TTATGAAAATAAACCTTCAATTTCGTCAA-ATAT-----TTACAAATGC-AT--TAGCTTTCGAT-TGTTC-TTTCCAACGATACCAAATggccttgcgtatatat
gi|3 : taatggaatgcacctgaccgcccac--GCATCA-GTAGTTTGAAA----TG-TCTATGCGCTGACAATGT--GC----TGCACTGAGCAGCG--------CTAA---C---GGGGAA--CACACCCGATATTCA-AATTGAGCATC--CAAATTACAGACGCTACTTATTG-------ATG-CAGATT-GTGTAATTTTCAA---------------------------AA-ACACCACCTT--TGATAAAACTAACAAATCAATTTTTTAAATAAAA-----TAAAAC---------CAACTTTGTATATGTCCGTTTTCA------------------------------------ATCAG--------TT-C-------AGGT-A-TTC--------G-TGTTTGCGTTCACCGGACAATACATTCAGAGTTAATTAAATGTTTCGTAatgtctatgcgctgacaatgtgctgcactgagcagcgctaacggggaacacacccgatattcaaattgagcatccaaattacagacgctacttattgatgcagattgtgtaattttcaaaaacaccacctttgataaaactaacaaatcaattttttaaataaaataaaaccaactttgtatatgtccgttttcaatcagttcaggtattcgtgtttgcgttcaccggacaatacattcagagttaattaaatgtttcgta
gi|4 : taatggaatgcacctgaccgcccacatttggtatcgttggaaagaacaatcgaaagctaatgcatttgtaaatatttgacgaaattgaaggtttattttcataataattggtgtttaaaagatacggactatgatttgaaagttacacatgttctatttaacaTCTTGTCCTGTGATTTTAAATTTGAGTATCTGAACTCATTTGAAACGG--------ATAAGTATAA---ATTTGATATTATTGGAAAGAACAATTTGAAGCTAATAAAATGTG-TGAATTTTG--GAAAAAAAATATTGGT-TAGTTTTAT-TAACAGTG------------GT-------------GTT--T----G-AAATAACAGATTGTATTCTTGAAAATTACACAAG-A---TCTAATGAGTAGCAC---TAACA-GTTT-GTGTGT------------TC---ATT-----------TCT------GG-----TA--TCG-GAT--ACCAAA-----ATTTTGAA--GAA--AT-TGCT----C--G-----------TTGCAGTACCGG-TTCATA-ATACACGA------------GTATTGAACAACG--------TACA---CTGGGA---A--CACGCCAGATACTAA-AAT---------------CGCTGGTATTAATCATAAGATC---AT------T---TGCAACTTTCTGAATC---ACAGTCAGT-T---T---TTAA-A
gi|4 : aatatttGT--AC----TGCAACGAGCAATTTCTTCAAAATTT---T---GG--------TATCCGATACCAG-AAATGAACACA--CAAACTGTTAGTGCTACTCATTAGA------T--C---TT-GTGTAATTTTCAAGAAT---ACAAT--CTGT---TATTTCAA-ACACCACTGT--TAATAAAACTAACCAATATTTTTTTTCCA-AAAT-----TCACACATTTTAT--TAGCTTCAAAT-TGTTC-TTTCCAATAATATCAAATT-TATAC-----------T---T-ATCCG-T------TT-C-------AAATGAGTTCAGATACTCA-AATTTAAAATCACAGGACAAGAGATTTGACCTTGGGT--ATgatttgaccttgggtat
gi|5 : aatattttttaaaaactgactgtgattcagaaagttgcaaatgatcttatgattaataccagcgattttagtatctggcgtgttcccagtgtacgttgttcaatactcgtgtattatgaaccgTATAACAT-TGT--GTT---AGTA--------CACCT------TG-----TAAACCA-G-T--GCAAAA-----A--TTGAGCAGCG--AT-T-C-----T--GTA-CA-G--A-TTG--A----G--------------CGACG----C----T-CACT-AG------------------------GG---A--CACACCCCATTTTAA-AATCTAACATA--CAAACTGCTAGTGTTACTTA-TAGAACA--AGG-C---TTAGTGTAACTGTCAAA----------------T---T---CTAA-ACGCCACTTT--TG-----------------ATTTCTTTAA-GAAT-----TCACACATTA-AT--TAGCTTT-AAT---TTT-TTCCCATCAATACAATATTATATATAATTATAATTAT--AT-ATCCGTT------TT-C-------ATTT-AGTTCAGATAGTCA-TGTTTAAGTTCTCCGGATAATACTTTTGGCC
gi|6 : TTTT--TAA-AAGTTGATAAGT-AAGTTTTAT-CGAAAGTAA-----------GTTTCATCGAAAGAAGTTATT----A-AAA-AACTGACTGTGTTTTTGAAAGTTGCA--AAC--GTTCTAATTAGTACTAC---TAGCATATTTAGTACCGGAAGT-G-T--GTTTTGAAAG----CG-TTGCTA------AA-----TG--CCT-A-T--GCGAAACCGTGATTTTGTTCTAGGTCATCT-TT----T--GCA-CA-G--ACATGT-A----GG-TCTAAATGCAGACAGTCTTCACTCAGTGCACTGGGCAACG--------CTCA---CGGGGG---A--CACACCCAATACAAACAATTTACATG---CAAACTTCTGGTTTTACATATTGGAActg
gi|7 : AATTCAAAGC---T-AAAAGT--T--ATTTTT--GAAGAATTTGATTTGT-TAGTTTTATA----A-----------------------------------T----A--------TAACTGTGTTTTTGAAAGTTAC----GCATGTTCTTATAACCAGCAC---CATCA-GTTT-ACATGTTAAACGT-T--GTT---AATGGGTGTG-TCTCGTGAGAGTTGATAAATA--TCT-G-G--GCAAAA-----G----GAGC-AGA--AT-T-CTGCTCTCGGCT-CATG--GTTTGCAA----GG-TCTATGCGCAGACGATTC--AC----TACATTGAGCAATG--------ATCAAAGG---GG---A--CATGACCGATACT-A-AACT---------TAAACTG
gi|8 : ACATGA-CATTTTTTAA--AGTTACACATACAACA-GTTT-GTATGTATAAT-T-TTGGTT----TTGGG--TGATCGCC--------G-----CG--CCT-T-T--GCACAA-----A--TTAAGGCGGA--AT-T-CT----T--GAA-CA-G--GCTTGCAA----GGTTTTATGTGACGACGATGT--CC----TGCCCTGAGCAAAT--------TTTA---C----------------------------ATG---------GAAACTGTTGGTGATGGTTATTGAAACTGAACG-A---TT-ATGTCGCCTACAAAAACCAGACGGT--AT-T---T---TAAA-ACACTACTTTTGTGATAAAACTtgcgctgaacgtaaaactga
gi|9 : T---T---TCAA-ACACAACTCT--TGATAAAAC-AA--AAT-GATTTCTTCAA-AAAT-----TCACACATTT-ATTATAGCTATCAGT-TGTTC-TTTCCTGCAGTACTAA--T-CATATA----------T--AA-ATTCATT------TT-C-------AACG-AGTTCAGATATACATTTTTTAAGATCACCAGACAATACTTGTGGCCTGCAGT--ATAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111
lowQualScore : 33333333 111 22 0000000000000000000000000000000000000000000000000 22222222 111 6666666666666666666666666666666666666666666666 111111 22222222 1111111111111111111111 1111 444444444444444444444 111111 555555555555555 1111111 444444444444444 33333333333333333 1111111 22222222 333333333333333 111111 111111111
lowQualScore : 1 1 88888888 111 0 1 111 5 5 5 777 0 55 8 8888888888888888888888888888888888888888888888888 8 5 99999999 1 111 6 6 1 0 4444444444444444444444444444444444444444444444 444444 33333333 99 77 6666666666666666666666 0 2222 5 5 777 66 9999 555555555555555555555 000000 0 4 4 333333333333333 3333333 0 1 2 333333333333333 4 88888888888888888 666 3 55 6666666 0 11 11111111 4 66 4 0 6666 000000000000000 55 8 111111 999999999 4 1 1 0 66
lowQualScore : . . ........ ... . . ... . . . ... . .. . ................................................. . . ........ . ... . . . . .............................................. ...... ........ .. .. ...................... . .... . . ... .. .... ..................... ...... . . . ............... ....... . . . ............... . ................. ... . .. ....... . .. ........ . .. . . .... ............... .. . ...... ......... . . . . ..
lowQualScore : 8 0 33333333 777 1 4 111 4 0 7 999 2 00 0 4444444444444444444444444444444444444444444444444 0 0 88888888 8 777 7 7 0 3 7777777777777777777777777777777777777777777777 999999 11111111 66 99 0000000000000000000000 4 1111 7 4 888 11 4444 444444444444444444444 333333 1 4 4 000000000000000 0000000 1 0 0 888888888888888 9 88888888888888888 444 6 55 0000000 1 99 22222222 4 11 7 1 4444 999999999999999 33 0 555555 000000000 0 0 2 1 11
consensus : NAAAAGTCTTGTCCGGTGAACTTAAACATGAATATCTGAACTAATTGAAAACGG--------ATATATATAA---ATTTGGTATTGTTGGAAAGAACAATTCAAAGCCAAT-AAATGTG-TGAATTTTT--NAAGAAATTGATT-GT-TAGTTTTATACAAAAGTGT-----------GT-------------GTT--T----A-AAA-AACTGACTGTGTTTTTGAAAGTTACACGAGCATGTTCTAATAAGTAGCAC---CAGCA-GTTT-GTATGTNAAAT-T-T--GTT---ANTG--TG-T-CGCCTNGTG--------------CCT-GT--GCAAAA-----A--TTGAGCCGGG--AT-T-CT----T--GCA-CA-G--GCTTGCAA----GG-TCTATGCGCAGACGAT---GT--AC----TGCACTGAGCAA---CGCT--CA------C---GG---A--CACACCCGATACTA-A-AAT-T-A-----CA----AAC-------TGCTGGTGCTACTTATTAGAAC---A-TG-C---TT-GTGTAACTTTCAAAAAC---ACAGT--GTGT---T---TTAA-ACACCACTTT--TGATAAAACTAACCAATCAATTTCTTCAAAAAT-----TCACACATTT-ATTG--GCTTTGAATTGTTCTTTCCAACAATACCAAATT-TATAT-----------T--AT-ATCCG-T------TT-C-------AATTAGTTCAGATATTCA-TGTTTAAGTTCACCGGACAANACTTTCGGCCTTGAGT--ATATTTCGTAT
Reference ( family-5668 ) : NAAAAGTCTTGTCCGGTGAACTTAAACATGAATATCTGAACTAATTGAAAACGG--------ATATATATAA---ATTTGGTATTGTTGGAAAGAACAATTCAAAGCCAAT-AAATGTG-TGAATTTTT--NAAGAAATTGATT-GT-TAGTTTTATACAAAAGTGT-----------GT-------------GTT--T----A-AAA-AACTGACTGTGTTTTTGAAAGTTACACGAGCATGTTCTAATAAGTAGCAC---CAGCA-GTTT-GTATGTNAAAT-T-T--GTT---ANTG--TG-T-CGCCTNGTG--------------CCT-GT--GCAAAA-----A--TTGAGCCGGG--AT-T-CT----T--GCA-CA-G--GCTTGCAA----GG-TCTATGCGCAGACGAT---GT--AC----TGCACTGAGCAA---CGNT--CA------C---GG---A--CACACCCGATACTA-A-AAT-TAA-----CA----AAC-------TGCTGGTGCTACTTATTAGAAC---A-TG-C---TT-GTGTAACTTTCAAAAAC---ACAGT--GTGT---T---TTAA-ACACCACTTT--TGATAAAACTAACCAATCAATTTCTTCAAAAAT-----TCACACATTT-ATTG--GCTTTGAATTGTTCTTTCCAACAATACCAAATT-TATAT-----------T--AT-ATCCG-T------TT-C-------AATTAGTTCAGATATTCA-TGTTTAAGTTCACCGGACAANACTTTCGGCCTTGAGT--ATATTTCGTAT
gi|1 : AAAAGTCTTGTCTGGTGAACTTACACATGATTATCTGAAATATTTGAATACAG--------ATATATATAA---ATTTGGTATTGATGGAAAGGACCATTCAATGTCAAT-AAATGTG-TGAATTTTT--TAAGTAATTGATT-GTATAGTTTTATATAGAAATAT-----------GT-------------GTT--T----ACAAA-AACTGACTGTGTTTTTGAAAGTAACATGAGTATATTCTAATAGGTAGCAC---TAGCA-ATTT-GCATGTAAAAT-T-T--GTT---ACTG--TG-T-CCCCCTGTG--------------CCT-GT--GCAAAA-----A--TTGAGCCGGG--AT-T-CT----T--GCA-CA-G--GCTTGCAA----GG-TTTATGTGCAGACGAT---GT--AC----TGCACTGAGCAA---ACAT--CA------T---GG---A--CACACCAGATACTT-A-AAT-T-------TA----AAC-------TTCTGGTGCTTTTAATTAGAAC---A-TGACAG-TT-GTGTAACTTTAAAAAAC---AGAGT--ATGTGTAT---TTAA-ACACCACTTT--TGATAAAACTAACCAATCAATTTCTTCGAAGAT-----TCACACATTT-ATTG--GCTTTGGATTGTTCTTTCGAATAATACCAAATT-TATAT-----------T--AT-ATCTG-T------TT-C-------AAATAGTTCAAATATTGG-TGTTAAAGTTCACCGGACAAAATTTATGGCTTTAAAT--ATATTTCATAT
gi|10 : aAAAAAC---AT--------T---T---TTAA-ACACCACTTT--GGATAAAACTAACAGATCAATTTCT-CAAAAAAAAAAATCTCACATTG-ATTG--GTTTTGAATTGTTCTTTCTAACAATGCCAAA-------------------------------T------TT-C-------AATTACTTCAGATGTTCA-TGTTAAAATTCACCGTACACAACTTTCGGCCTTGTGT--
gi|11 : taAAAAGTCTTGTCCGCTGAACTTAAACGGGAACATCTGACTTAATTGAAAACAG--------ATATATATAA---ATTTGGTATTGTTGGTAAGAAC-ATTGA---CTAAT-ATAGATA-TAAGTCCTTGGTAAGAA
gi|12 : ttaatattgatagatgtcagacg--GTGT---T---TTAATATACTACTTT--TGATTAAACTAACTAATCAATT---------A-------CAAACATTT-ATTG--ACTTTGAATTATTTTTTCCAACCAAACTAA--T-TGCAT-----------TCCAT-GTCCGTT------TT-C-------AATCAGTTGAGATATcaatttaaatccgac
gi|13 : AAAATCTTATCCAGTGAACTTAAACACAAATATCTGCACTAATTGAAAACAGATACATAAATATATATAA---ATTTGATATTGTTGGTAAGAATAATAAAAATCAAAT-AAATG
gi|14 : cttTTAAACATGAATATTTGAAGTAATTGGAAACGGATAT----ATATATATAA---ATTAGGTATTGTTGGAA--GATAATTAAAAACCAAT-TAATGTGATGATTTTTT--TAAGAAATTGattga
gi|15 : ATA-TATAT-----------T--AT---CCG-T------TT-CTGTTTTCAATTAGCTGAGATATATA-TGTTTAAGTTCATCGGACAATACTTTTGGTCCTGCTT--ATATCT
gi|16 : acaatat--AT-ATCCG-T------TTTC-------AATTAGTTCAAAAAGTCA-TGTGTAAGTTCACTGGACAAGACTTTCGGCCTTCACT--ATAatatat
gi|17 : acataaatgTTAGTATTATTAGAAACAACAATTCAAAAACAAT-AAATGTG-TGAATTTTT--AAGGAAA
gi|18 : TTAAGCTATTCA-TGTTAAAATTCACTGAACAAGACTTTTGTCCTTGAGT--ATAtaatactaaa
gi|2 : AAAAGTCGTGTCCGGTGAATCTAAACATA-------GAACGTATTAAAGACGG--------ATGTATATAATATATTTGGTGTTGTTGGAAAGAACAATTCATTGCTAAT-AAATGTG-TGAAATATA--GAAAAAATTGATG-GC-TAGTTTTAT-CAAAAGTGTTGTTTTTTTGTGT-------------GTT--TTTTTA-AAA-AA-TGGCAATATTCTCGAAAGTTATAC----ATGTTCTAATAAGTAGCAC---CAGCA-GTTT-GTATTTTAACT-T-----TT---AGTA--T-------CTGGTG--------------TCTCATCCGTATAA-----A--TC-AGTCGGA--ATCT-TT----T--GT--------TTTTGCAA----TG-TCTATACGCAGACCAT---GT--AC----TGCATTAAGCAATT-TTTT--CA------T---CA---ATTCACAACCGAAACTA-A-CAT-TTA-----CA----AACTACAAATTGTTAGTGCTGCTTATCAGAAC---A---------T-GTGCAACCTTCAAAATC---ACAGTAAGTGC---T---TTAA-ACACAAGTTC--TGGTAGCACTAACCAATACATTTATT-AAA----------ACACATTT-AATG--GCTTTGAATTGTTCTTTCAAACAAAACTAAGTT-CATG------------T--ATAATCAA-TGCAATATC-C-------CATTAGTTCAG----TTA-TGTTTAAAGTCACCTGAAAAGACTTTTGGTATTGAGT--
gi|3 : -----CA----AAC-------TACTGATGCTGTTAAATAGAAC---A-TG---------TGTAACTTTCAAAT-C---ATAGTCCGTATCT-T---TTAA-ACACCAATTA--TTATGAAAATAAACCTTCAATTTCGTCAAATAT-----TTACAAATGC-ATTA--GCTTTCGATTGTTCTTTCCAACGATACCAAATggccttgcgtatatat
gi|3 : taatggaatgcacctgaccgcccac--GCATCA-GTAGTTTGAAA----TG-TCTATGCGCTGACAAT---GT--GC----TGCACTGAGCAG---CGCT--AA------C---GGGGAA--CACACCCGATATTC-A-AAT-TGAGCATCCA----AAT-------TACAGACGCTACTTATTG-------A-TG-CAGATT-GTGTAATTTTCAAAAAC---AC-------------------------CACCTT--TGATAAAACTAA--------------CAAA--------TCA---ATTT---------TTTAAATAA--------AATAAAACCAACTT-TGTAT--------------AT-GTCCG-T------TTTC-------AATCAGTTCAGGTATTCG-TGTTTGCGTTCACCGGACAATACATTCAGAGTTAATTAAATGTTTCGTAaaatgtctatgcgctgacaatgtgctgcactgagcagcgctaacggggaacacacccgatattcaaattgagcatccaaattacagacgctacttattgatgcagattgtgtaattttcaaaaacaccacctttgataaaactaacaaatcaattttttaaataaaataaaaccaactttgtatatgtccgttttcaatcagttcaggtattcgtgtttgcgttcaccggacaatacattcagagttaattaaatgtttcgta
gi|4 : taatggaatgcacctgaccgcccacatttggtatcgttggaaagaacaatcgaaagctaatgcatttgtaaatatttgacgaaattgaaggtttattttcataataattggtgtttaaaagatacggactatgatttgaaagttacacatgttctatttaacaTCTTGTCCTGTGATTTTAAATTTGAGTATCTGAACTCATTTGAAACGG--------ATAAGTATAA---ATTTGATATTATTGGAAAGAACAATTTGAAGCTAATAAAATGTG-TGAATTTTG--GAAAAAAAATATTGGT-TAGTTTTAT-TAACAGTG------------GT-------------GTT--T----G-AAATAACAGATTGTATTCTTGAAAATTACACAAG-A---TCTAATGAGTAGCAC---TAACA-GTTT-GTGTGTTCATT-TCT--G--------G--TA-T-CG---GATA--------------CC---------AAA-----ATTTTGAA--GAA--AT-TGCT----C--G-----------TTGCAGTACCGG-TTCATA-ATACACGA---------------GTATTGAACAA---CGTA--CA------CTGGGA---A--CACGCCAGATACTA-A-AAT-------------------------CGCTGGTATTAATCATAAGATC---A-T------T---TGCAACTTTCTGAATC---ACAGTCAGT-T---T---TTAA-A
gi|4 : aatattt---GT--AC----TGCAACGAGCAATTTC-TT--CAAAATTTT---GG--------TATCCGATACCAGA-AAT-GAA-----CACACAAAC-------TGTTAGTGCTACTCATTAGA-------T--C---TT-GTGTAATTTTCAAGAAT---ACAAT--CTGT---TATTTCAA-ACACCACTGT--TAATAAAACTAACCAATATTTTTTTTCCAAAAT-----TCACACATTTTATTA--GCTTCAAATTGTTCTTTCCAATAATATCAAATT-TATAC-----------T---T-ATCCG-T------TT-CA------AATGAGTTCAGATACTCA-AATTTAAAATCACAGGACAAGAGATTTGACCTTGGGT--ATgatttgaccttgggtat
gi|5 : aatattttttaaaaactgactgtgattcagaaagttgcaaatgatcttatgattaataccagcgattttagtatctggcgtgttcccagtgtacgttgttcaatactcgtgtattatgaaccgTGAGCAG-CGATTCTGT--AC----AG-ATTGAGCGA---CGCT--CA------CTAGGG---A--CACACCCCATTTTA-A-AATCTAA-----CATACAAAC-------TGCTAGTGTTACTTAT-AGAAC---AAGG-C---TTAGTGTAACTGTCAAA----------------T---T---CTAA-ACGCCACTTT--TGAT-----------------TTCTTTAAGAAT-----TCACACATTA-ATTA--GCTTT-AATT--TTTTCCCATCAATACAATATTATATATAATTATAATTAT--AT-ATCCG-T------TTTC-------ATTTAGTTCAGATAGTCA-TGTTTAAGTTCTCCGGATAATACTTTTGGCC
gi|5 : TATAACAT-TGT--GTT---AGTA-------CACCTTGTAAA------------CCA-GT--GCAAAA-----A--TTGAGCAGCG--AT-T-C-----T--GTA-CA-G--atttttgcactggtttacaaggtgtactaacacaatgttatactg
gi|6 : ggccaaaagtattatccggagaacttaaacatgactatctgaactaaatgaaaacggatatataattataattatatataatattgtattgatgggaaaaaattaaagctaattaatgtgtgaattcttaaagaaatcaaaagtggcgtttagaatttgacagttacactaagccttgttctataagtaacactagcagtttgtatgttagattttaaaatggggtgtgtccctagtgagcgtcgctcaatTTTT--TAA-AAGTTGATAAGT-AAGTTTTAT-CGAAAGTAA-----------GTTTCATCGAAAGAAGTTATT----A-AAA-AACTGACTGTGTTTTTGAAAGTTGCA--AAC--GTTCTAATTAGTACTAC---TAGCATATTTAGTACCGGAAGT-G-T--GTTTTGAAAG--CG-T-TGCTAAATG--------------CCT-AT--GCGAAACCGTGATTTTGTTCTAGGTCATCT-TT----T--GCA-CA-G--ACATGT-A----GG-TCTAAATGCAGACAGT---CTTCACTCAGTGCACTGGGCAA---CGCT--CA------CGGGGG---A--CACACCCAATACAA-ACAAT-TTACATG-CA----AAC-------TTCTGGTTTTACATATTGGAActg
gi|7 : AATTCAAAGC---T-AAAAGT--T--ATTTTT--GAAGAATTTGATTTGT-TAGTTTTATA----A-----------------------------------T----A--------TAACTGTGTTTTTGAAAGTTAC----GCATGTTCTTATAACCAGCAC---CATCA-GTTT-ACATGTTAAACGT-T--GTT---AATG--GG-TGTGTCTCGTGAGAGTTGATAAATATCT-GG--GCAAAA-----G----GAGC-AGA--AT-T-CTGCTCTCGGCT-CATG--GTTTGCAA----GG-TCTATGCGCAGACGAT---TC--AC----TACATTGAGCAA---TGAT--CAAAG---G---GG---A--CATGACCGATACTA-A-ACT-T--------A----AAC-------TG
gi|8 : ACATGA-CATTTTTTAA--AGTTACACATACAACA-GTTT-GTATGTATAAT-T-TTGGTT----TTGGGTGAT-CGCC--GCG--------------CCT-TT--GCACAA-----A--TTAAGGCGGA--AT-T-CT----T--GAA-CA-G--GCTTGCAA----GGTTTTATGTGACGACGAT---GT--CC----TGCCCTGAGCAA---ATTTTACA------T---GG---A-------------------------------------AAC-------TGTTGGTGATGGTTATTGAAACTGAA-CG-A---TT-ATGTCGCCTACAAAAACCAGACGGT--AT-T---T---TAAA-ACACTACTTTTGTGATAAAACTtgcgctgaacgtaaaactga
gi|9 : T---T---TCAA-ACACAACTCT--TGATAAAAC-AA--AAT-GATTTCTTCAAAAAT-----TCACACATTT-ATTATAGCTATCAGTTGTTCTTTCCTGCAGTACTAA--T-CATATA----------T--AA-ATTCATT------TT-C-------AACGAGTTCAGATATACATTTTTTAAGATCACCAGACAATACTTGTGGCCTGCAGT--ATAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111
lowQualScore : 33333333 111 22 0000000000000000000000000000000000000000000000000 22222222 111 6666666666666666666666666666666666666666666666 111111 22222222 1111111111111111111111 1111 555555555555555555555555555 555555555555555555555555555 444444444444444 33333333333333333 1111111 22222222 333333333333333 111111 111111111
lowQualScore : 1 1 88888888 111 0 1 111 5 5 5 777 0 55 8 8888888888888888888888888888888888888888888888888 8 5 99999999 1 111 6 6 1 0 4444444444444444444444444444444444444444444444 444444 33333333 99 77 6666666666666666666666 0 2222 5 5 777 66 9999 888888888888888888888888888 0 333333333333333333333333333 0 1 2 333333333333333 4 88888888888888888 666 3 55 6666666 0 11 11111111 4 66 4 0 6666 000000000000000 55 8 111111 999999999 4 1 1 0 66
lowQualScore : . . ........ ... . . ... . . . ... . .. . ................................................. . . ........ . ... . . . . .............................................. ...... ........ .. .. ...................... . .... . . ... .. .... ........................... . ........................... . . . ............... . ................. ... . .. ....... . .. ........ . .. . . .... ............... .. . ...... ......... . . . . ..
lowQualScore : 8 0 33333333 777 1 4 111 4 0 7 999 2 00 0 4444444444444444444444444444444444444444444444444 0 0 88888888 8 777 7 7 0 3 7777777777777777777777777777777777777777777777 999999 11111111 66 99 0000000000000000000000 4 1111 7 4 888 11 4444 888888888888888888888888888 1 666666666666666666666666666 1 0 0 888888888888888 9 88888888888888888 444 6 55 0000000 1 99 22222222 4 11 7 1 4444 999999999999999 33 0 555555 000000000 0 0 2 1 11
consensus : NAAAAGTCTTGTCCGGTGAACTTAAACATGAATATCTGAACTAATTGAAAACGG--------ATATATATAA---ATTTGGTATTGTTGGAAAGAACAATTCAAAGCCAAT-AAATGTG-TGAATTTTT--NAAGAAATTGATT-GT-TAGTTTTATACAAAAGTGT-----------GT-------------GTT--T----A-AAA-AACTGACTGTGTTTTTGAAAGTTACACGAGCATGTTCTAATAAGTAGCAC---CAGCA-GTTT-GTATGTNAAAT-T-T--GTT---ANTG--TG-T-CGCCTNGTG--------------CCT-GT--GCAAAA-----A--TTGAGCCGGG--AT-T-CT----T--GCA-CA-G--GCTTGCAA----GG-TCTATGCGCAGACGAT---GT--AC----TGCACTGAGCAA---CGCTCA------C---GG---A--CACACCCGATACTA--------A-AAT------TG------CAAACTGCTGGTGCTACTTATTAGAAC---A-TG-C---TT-GTGTAACTTTCAAAAAC---ACAGT--GTGT---T---TTAA-ACACCACTTT--TGATAAAACTAACCAATCAATTTCTTCAAAAAT-----TCACACATTT-ATTG--GCTTTGAATTGTTCTTTCCAACAATACCAAATT-TATAT-----------T--AT-ATCCG-T------TT-C-------AATTAGTTCAGATATTCA-TGTTTAAGTTCACCGGACAANACTTTCGGCCTTGAGT--ATATTTCGTAT
Reference ( family-5668 ) : NAAAAGTCTTGTCCGGTGAACTTAAACATGAATATCTGAACTAATTGAAAACGG--------ATATATATAA---ATTTGGTATTGTTGGAAAGAACAATTCAAAGCCAAT-AAATGTG-TGAATTTTT--NAAGAAATTGATT-GT-TAGTTTTATACAAAAGTGT-----------GT-------------GTT--T----A-AAA-AACTGACTGTGTTTTTGAAAGTTACACGAGCATGTTCTAATAAGTAGCAC---CAGCA-GTTT-GTATGTNAAAT-T-T--GTT---ANTG--TG-T-CGCCTNGTG--------------CCT-GT--GCAAAA-----A--TTGAGCCGGG--AT-T-CT----T--GCA-CA-G--GCTTGCAA----GG-TCTATGCGCAGACGAT---GT--AC----TGCACTGAGCAA---CGCTCA------C---GG---A--CACACCCGATACTA--------A-AAT------TA------CAAACTGCTGGTGCTACTTATTAGAAC---A-TG-C---TT-GTGTAACTTTCAAAAAC---ACAGT--GTGT---T---TTAA-ACACCACTTT--TGATAAAACTAACCAATCAATTTCTTCAAAAAT-----TCACACATTT-ATTG--GCTTTGAATTGTTCTTTCCAACAATACCAAATT-TATAT-----------T--AT-ATCCG-T------TT-C-------AATTAGTTCAGATATTCA-TGTTTAAGTTCACCGGACAANACTTTCGGCCTTGAGT--ATATTTCGTAT
gi|1 : AAAAGTCTTGTCTGGTGAACTTACACATGATTATCTGAAATATTTGAATACAG--------ATATATATAA---ATTTGGTATTGATGGAAAGGACCATTCAATGTCAAT-AAATGTG-TGAATTTTT--TAAGTAATTGATT-GTATAGTTTTATATAGAAATAT-----------GT-------------GTT--T----ACAAA-AACTGACTGTGTTTTTGAAAGTAACATGAGTATATTCTAATAGGTAGCAC---TAGCA-ATTT-GCATGTAAAAT-T-T--GTT---ACTG--TG-T-CCCCCTGTG--------------CCT-GT--GCAAAA-----A--TTGAGCCGGG--AT-T-CT----T--GCA-CA-G--GCTTGCAA----GG-TTTATGTGCAGACGAT---GT--AC----TGCACTGAGCAA---ACATCA------T---GG---A--CACACCAGATACTT--------A-AAT------T-------TAAACTTCTGGTGCTTTTAATTAGAAC---A-TGACAG-TT-GTGTAACTTTAAAAAAC---AGAGT--ATGTGTAT---TTAA-ACACCACTTT--TGATAAAACTAACCAATCAATTTCTTCGAAGAT-----TCACACATTT-ATTG--GCTTTGGATTGTTCTTTCGAATAATACCAAATT-TATAT-----------T--AT-ATCTG-T------TT-C-------AAATAGTTCAAATATTGG-TGTTAAAGTTCACCGGACAAAATTTATGGCTTTAAAT--ATATTTCATAT
gi|10 : aAAAAAC---AT--------T---T---TTAA-ACACCACTTT--GGATAAAACTAACAGATCAATTTCT-CAAAAAAAAAAATCTCACATTG-ATTG--GTTTTGAATTGTTCTTTCTAACAATGCCAAA-------------------------------T------TT-C-------AATTACTTCAGATGTTCA-TGTTAAAATTCACCGTACACAACTTTCGGCCTTGTGT--
gi|11 : taAAAAGTCTTGTCCGCTGAACTTAAACGGGAACATCTGACTTAATTGAAAACAG--------ATATATATAA---ATTTGGTATTGTTGGTAAGAAC-ATTGA---CTAAT-ATAGATA-TAAGTCCTTGGTAAGAA
gi|12 : ttaatattgatagatgtcagacg--GTGT---T---TTAATATACTACTTT--TGATTAAACTAACTAATCAATT---------A-------CAAACATTT-ATTG--ACTTTGAATTATTTTTTCCAACCAAACTAA--T-TGCAT-----------TCCAT-GTCCGTT------TT-C-------AATCAGTTGAGATATcaatttaaatccgac
gi|13 : AAAATCTTATCCAGTGAACTTAAACACAAATATCTGCACTAATTGAAAACAGATACATAAATATATATAA---ATTTGATATTGTTGGTAAGAATAATAAAAATCAAAT-AAATG
gi|14 : cttTTAAACATGAATATTTGAAGTAATTGGAAACGGATAT----ATATATATAA---ATTAGGTATTGTTGGAA--GATAATTAAAAACCAAT-TAATGTGATGATTTTTT--TAAGAAATTGattga
gi|15 : ATA-TATAT-----------T--AT---CCG-T------TT-CTGTTTTCAATTAGCTGAGATATATA-TGTTTAAGTTCATCGGACAATACTTTTGGTCCTGCTT--ATATCT
gi|16 : acaatat--AT-ATCCG-T------TTTC-------AATTAGTTCAAAAAGTCA-TGTGTAAGTTCACTGGACAAGACTTTCGGCCTTCACT--ATAatatat
gi|17 : acataaatgTTAGTATTATTAGAAACAACAATTCAAAAACAAT-AAATGTG-TGAATTTTT--AAGGAAA
gi|18 : TTAAGCTATTCA-TGTTAAAATTCACTGAACAAGACTTTTGTCCTTGAGT--ATAtaatactaaa
gi|2 : AAAAGTCGTGTCCGGTGAATCTAAACATA-------GAACGTATTAAAGACGG--------ATGTATATAATATATTTGGTGTTGTTGGAAAGAACAATTCATTGCTAAT-AAATGTG-TGAAATATA--GAAAAAATTGATG-GC-TAGTTTTAT-CAAAAGTGTTGTTTTTTTGTGT-------------GTT--TTTTTA-AAA-AA-TGGCAATATTCTCGAAAGTTATAC----ATGTTCTAATAAGTAGCAC---CAGCA-GTTT-GTATTTTAACT-T-----TT---AGTA--T-------CTGGTG--------------TCTCATCCGTATAA-----A--TC-AGTCGGA--ATCT-TT----T--GT--------TTTTGCAA----TG-TCTATACGCAGACCAT---GT--AC----TGCATTAAGCAATT-TTTTCA------T---CA---ATTCACAACCGAAACTAACATTTACA-AAC------TA------CAAATTGTTAGTGCTGCTTATCAGAAC---A---------T-GTGCAACCTTCAAAATC---ACAGTAAGTGC---T---TTAA-ACACAAGTTC--TGGTAGCACTAACCAATACATTTATT-AAA----------ACACATTT-AATG--GCTTTGAATTGTTCTTTCAAACAAAACTAAGTT-CATG------------T--ATAATCAA-TGCAATATC-C-------CATTAGTTCAG----TTA-TGTTTAAAGTCACCTGAAAAGACTTTTGGTATTGAGT--
gi|3 : AT------TT------CAAACTACTGATGCTGTTAAATAGAAC---A-TG---------TGTAACTTTCAAAT-C---ATAGTCCGTATCT-T---TTAA-ACACCAATTA--TTATGAAAATAAACCTTCAATTTCGTCAAATAT-----TTACAAATGC-ATTA--GCTTTCGATTGTTCTTTCCAACGATACCAAATggccttgcgtatatat
gi|3 : taatggaatgcacctgaccgcccac--GCATCA-GTAGTTTGAAA----TG-TCTATGCGCTGACAAT---GT--GC----TGCACTGAGCAG---CGCTAA------C---GGGGAA--CACACCCGATATTC--------A-AAT------TGAGCATCCAAATTACAGACGCTACTTATTG-------A-TG-CAGATT-GTGTAATTTTCAAAAAC---AC-------------------------CACCTT--TGATAAAACTAA--------------CAAA--------TCA---ATTT---------TTTAAATAA--------AATAAAACCAACTT-TGTAT--------------AT-GTCCG-T------TTTC-------AATCAGTTCAGGTATTCG-TGTTTGCGTTCACCGGACAATACATTCAGAGTTAATTAAATGTTTCGTAgtctatgcgctgacaatgtgctgcactgagcagcgctaacggggaacacacccgatattcaaattgagcatccaaattacagacgctacttattgatgcagattgtgtaattttcaaaaacaccacctttgataaaactaacaaatcaattttttaaataaaataaaaccaactttgtatatgtccgttttcaatcagttcaggtattcgtgtttgcgttcaccggacaatacattcagagttaattaaatgtttcgta
gi|4 : taatggaatgcacctgaccgcccacatttggtatcgttggaaagaacaatcgaaagctaatgcatttgtaaatatttgacgaaattgaaggtttattttcataataattggtgtttaaaagatacggactatgatttgaaagttacacatgttctatttaacaTCTTGTCCTGTGATTTTAAATTTGAGTATCTGAACTCATTTGAAACGG--------ATAAGTATAA---ATTTGATATTATTGGAAAGAACAATTTGAAGCTAATAAAATGTG-TGAATTTTG--GAAAAAAAATATTGGT-TAGTTTTAT-TAACAGTG------------GT-------------GTT--T----G-AAATAACAGATTGTATTCTTGAAAATTACACAAG-A---TCTAATGAGTAGCAC---TAACA-GTTT-GTGTGTTCATT-TCT--G--------G--TA-T-CG---GATA--------------CC---------AAA-----ATTTTGAA--GAA--AT-TGCT----C--G-----------TTGCAGTACCGG-TTCATA-ATACACGA---------------GTATTGAACAA---CGTACA------CTGGGA---A--CACGCCAGATACTA--------A-AAT-------------------CGCTGGTATTAATCATAAGATC---A-T------T---TGCAACTTTCTGAATC---ACAGTCAGT-T---T---TTAA-A
gi|4 : aatattt---GT--AC----TGCAACGAGCAATTTC-TTCAAAATTTT---GG--------TATCCGATACCAG-------A-AATGAACA-CA------CAAACTGTTAGTGCTACTCATTAGA-------T--C---TT-GTGTAATTTTCAAGAAT---ACAAT--CTGT---TATTTCAA-ACACCACTGT--TAATAAAACTAACCAATATTTTTTTTCCAAAAT-----TCACACATTTTATTA--GCTTCAAATTGTTCTTTCCAATAATATCAAATT-TATAC-----------T---T-ATCCG-T------TT-CA------AATGAGTTCAGATACTCA-AATTTAAAATCACAGGACAAGAGATTTGACCTTGGGT--ATgatttgaccttgggtat
gi|5 : aatattttttaaaaactgactgtgattcagaaagttgcaaatgatcttatgattaataccagcgattttagtatctggcgtgttcccagtgtacgttgttcaatactcgtgtattatgaaccgTGAGCAG-CGATTCTGT--AC----AG-ATTGAGCGA---CGCTCA------CTAGGG---A--CACACCCCATTTTA--------A-AATCTAACATA------CAAACTGCTAGTGTTACTTAT-AGAAC---AAGG-C---TTAGTGTAACTGTCAAA----------------T---T---CTAA-ACGCCACTTT--TGAT-----------------TTCTTTAAGAAT-----TCACACATTA-ATTA--GCTTT-AATT--TTTTCCCATCAATACAATATTATATATAATTATAATTAT--AT-ATCCG-T------TTTC-------ATTTAGTTCAGATAGTCA-TGTTTAAGTTCTCCGGATAATACTTTTGGCC
gi|5 : TATAACAT-TGT--GTT---AGTA-------CACCTTGTAAA------------CCA-GT--GCAAAA-----A--TTGAGCAGCG--AT-T-C-----T--GTA-CA-G--atttttgcactggtttacaaggtgtactaacacaatgttatactg
gi|6 : ggccaaaagtattatccggagaacttaaacatgactatctgaactaaatgaaaacggatatataattataattatatataatattgtattgatgggaaaaaattaaagctaattaatgtgtgaattcttaaagaaatcaaaagtggcgtttagaatttgacagttacactaagccttgttctataagtaacactagcagtttgtatgttagattttaaaatggggtgtgtccctagtgagcgtcgctcaatTTTT--TAA-AAGTTGATAAGT-AAGTTTTAT-CGAAAGTAA-----------GTTTCATCGAAAGAAGTTATT----A-AAA-AACTGACTGTGTTTTTGAAAGTTGCA--AAC--GTTCTAATTAGTACTAC---TAGCATATTTAGTACCGGAAGT-G-T--GTTTTGAAAG--CG-T-TGCTAAATG--------------CCT-AT--GCGAAACCGTGATTTTGTTCTAGGTCATCT-TT----T--GCA-CA-G--ACATGT-A----GG-TCTAAATGCAGACAGT---CTTCACTCAGTGCACTGGGCAA---CGCTCA------CGGGGG---A--CACACCCAATACAA--------ACAATTTACA-TG------CAAACTTCTGGTTTTACATATTGGAActg
gi|7 : AATTCAAAGC---T-AAAAGT--T--ATTTTT--GAAGAATTTGATTTGT-TAGTTTTATA----A-----------------------------------T----A--------TAACTGTGTTTTTGAAAGTTAC----GCATGTTCTTATAACCAGCAC---CATCA-GTTT-ACATGTTAAACGT-T--GTT---AATG--GG-TGTGTCTCGTGAGAGTTGATAAATATCT-GG--GCAAAA-----G----GAGC-AGA--AT-T-CTGCTCTCGGCT-CATG--GTTTGCAA----GG-TCTATGCGCAGACGAT---TC--AC----TACATTGAGCAA---TGATCAAAG---G---GG---A--CATGACCGATACTA--------A-ACT------T--------AAACTG
gi|8 : ACATGA-CATTTTTTAA--AGTTACACATACAACA-GTTT-GTATGTATAAT-T-TTGGTT----TTGGGTGAT-CGCC--GCG--------------CCT-TT--GCACAA-----A--TTAAGGCGGA--AT-T-CT----T--GAA-CA-G--GCTTGCAA----GGTTTTATGTGACGACGAT---GT--CC----TGCCCTGAGCAA-----------------------------------ATTTTA--------C-A--------TG------GAAACTGTTGGTGATGGTTATTGAAACTGAA-CG-A---TT-ATGTCGCCTACAAAAACCAGACGGT--AT-T---T---TAAA-ACACTACTTTTGTGATAAAACTtgcgctgaacgtaaaactga
gi|9 : T---T---TCAA-ACACAACTCT--TGATAAAAC-AA--AAT-GATTTCTTCAAAAAT-----TCACACATTT-ATTATAGCTATCAGTTGTTCTTTCCTGCAGTACTAA--T-CATATA----------T--AA-ATTCATT------TT-C-------AACGAGTTCAGATATACATTTTTTAAGATCACCAGACAATACTTGTGGCCTGCAGT--ATAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111
lowQualScore : 33333333 111 22 0000000000000000000000000000000000000000000000000 22222222 111 6666666666666666666666666666666666666666666666 111111 11111111 1111 1111111111111111111111 11111 555555555555555555555555555 555555555555555555555555555 444444444444444 33333333333333333 1111111 22222222 333333333333333 111111 111111111
lowQualScore : 1 1 88888888 111 0 1 111 5 5 5 777 0 55 8 8888888888888888888888888888888888888888888888888 8 5 99999999 1 111 6 6 1 0 4444444444444444444444444444444444444444444444 444444 55555555 3 7777 77 6666666666666666666666 0 22222 5 5 777 66 9999 888888888888888888888888888 0 111111111111111111111111111 0 1 2 333333333333333 4 88888888888888888 666 3 55 6666666 0 11 11111111 4 66 4 0 6666 000000000000000 55 8 111111 999999999 4 1 1 0 66
lowQualScore : . . ........ ... . . ... . . . ... . .. . ................................................. . . ........ . ... . . . . .............................................. ...... ........ . .... .. ...................... . ..... . . ... .. .... ........................... . ........................... . . . ............... . ................. ... . .. ....... . .. ........ . .. . . .... ............... .. . ...... ......... . . . . ..
lowQualScore : 8 0 33333333 777 1 4 111 4 0 7 999 2 00 0 4444444444444444444444444444444444444444444444444 0 0 88888888 8 777 7 7 0 3 7777777777777777777777777777777777777777777777 999999 33333333 0 4444 99 0000000000000000000000 4 33333 7 4 888 11 4444 888888888888888888888888888 1 333333333333333333333333333 1 0 0 888888888888888 9 88888888888888888 444 6 55 0000000 1 99 22222222 4 11 7 1 4444 999999999999999 33 0 555555 000000000 0 0 2 1 11
consensus : NAAAAGTCTTGTCCGGTGAACTTAAACATGAATATCTGAACTAATTGAAAACGG--------ATATATATAA---ATTTGGTATTGTTGGAAAGAACAATTCAAAGCCAAT-AAATGTG-TGAATTTTT--NAAGAAATTGATT-GT-TAGTTTTATACAAAAGTGT-----------GT-------------GTT--T----A-AAA-AACTGACTGTGTTTTTGAAAGTTACACGAGCATGTTCTAATAAGTAGCAC---CAGCA-GTTT-GTATGTNAAAT-T-T--GTT---ANTG--TG-T-CGCCTNGTG--------------CCT-GT--GCAAAA-----A--TTGAG--CCGGG--AT-T-CT----T--GCA-CA-G--GCTTGCAA----GG-TCTATGCGCAGACGAT---GT--ACT----GCACTGAGCAA---CGCTCA------C---GG---A--CACACCCGATACTA--------A-AAT------TG------CAAACTGCTGGTGCTACTTATTAGAAC---A-TG-C---TT-GTGTAACTTTCAAAAAC---ACAGT--GTGT---T---TTAA-ACACCACTTT--TGATAAAACTAACCAATCAATTTCTTCAAAAAT-----TCACACATTT-ATTG--GCTTTGAATTGTTCTTTCCAACAATACCAAATT-TATAT-----------T--AT-ATCCG-T------TT-C-------AATTAGTTCAGATATTCA-TGTTTAAGTTCACCGGACAANACTTTCGGCCTTGAGT--ATATTTCGTAT
Reference ( family-5668 ) : NAAAAGTCTTGTCCGGTGAACTTAAACATGAATATCTGAACTAATTGAAAACGG--------ATATATATAA---ATTTGGTATTGTTGGAAAGAACAATTCAAAGCCAAT-AAATGTG-TGAATTTTT--NAAGAAATTGATT-GT-TAGTTTTATACAAAAGTGT-----------GT-------------GTT--T----A-AAA-AACTGACTGTGTTTTTGAAAGTTACACGAGCATGTTCTAATAAGTAGCAC---CAGCA-GTTT-GTATGTNAAAT-T-T--GTT---ANTG--TG-T-CGCCTNGTG--------------CCT-GT--GCAAAA-----A--TTGAG--CCGGG--AT-T-CT----T--GCA-CA-G--GCTTGCAA----GG-TCTATGCGCAGACGAT---GT--ACT----GCACTGAGCAA---CGCTCA------C---GG---A--CACACCCGATACTA--------A-AAT------TG------CAAACTGCTGGTGCTACTTATTAGAAC---A-TG-C---TT-GTGTAACTTTCAAAAAC---ACAGT--GTGT---T---TTAA-ACACCACTTT--TGATAAAACTAACCAATCAATTTCTTCAAAAAT-----TCACACATTT-ATTG--GCTTTGAATTGTTCTTTCCAACAATACCAAATT-TATAT-----------T--AT-ATCCG-T------TT-C-------AATTAGTTCAGATATTCA-TGTTTAAGTTCACCGGACAANACTTTCGGCCTTGAGT--ATATTTCGTAT
gi|1 : AAAAGTCTTGTCTGGTGAACTTACACATGATTATCTGAAATATTTGAATACAG--------ATATATATAA---ATTTGGTATTGATGGAAAGGACCATTCAATGTCAAT-AAATGTG-TGAATTTTT--TAAGTAATTGATT-GTATAGTTTTATATAGAAATAT-----------GT-------------GTT--T----ACAAA-AACTGACTGTGTTTTTGAAAGTAACATGAGTATATTCTAATAGGTAGCAC---TAGCA-ATTT-GCATGTAAAAT-T-T--GTT---ACTG--TG-T-CCCCCTGTG--------------CCT-GT--GCAAAA-----A--TTGAG--CCGGG--AT-T-CT----T--GCA-CA-G--GCTTGCAA----GG-TTTATGTGCAGACGAT---GT--ACT----GCACTGAGCAA---ACATCA------T---GG---A--CACACCAGATACTT--------A-AAT------T-------TAAACTTCTGGTGCTTTTAATTAGAAC---A-TGACAG-TT-GTGTAACTTTAAAAAAC---AGAGT--ATGTGTAT---TTAA-ACACCACTTT--TGATAAAACTAACCAATCAATTTCTTCGAAGAT-----TCACACATTT-ATTG--GCTTTGGATTGTTCTTTCGAATAATACCAAATT-TATAT-----------T--AT-ATCTG-T------TT-C-------AAATAGTTCAAATATTGG-TGTTAAAGTTCACCGGACAAAATTTATGGCTTTAAAT--ATATTTCATAT
gi|10 : aAAAAAC---AT--------T---T---TTAA-ACACCACTTT--GGATAAAACTAACAGATCAATTTCT-CAAAAAAAAAAATCTCACATTG-ATTG--GTTTTGAATTGTTCTTTCTAACAATGCCAAA-------------------------------T------TT-C-------AATTACTTCAGATGTTCA-TGTTAAAATTCACCGTACACAACTTTCGGCCTTGTGT--
gi|11 : taAAAAGTCTTGTCCGCTGAACTTAAACGGGAACATCTGACTTAATTGAAAACAG--------ATATATATAA---ATTTGGTATTGTTGGTAAGAAC-ATTGA---CTAAT-ATAGATA-TAAGTCCTTGGTAAGAA
gi|12 : ttaatattgatagatgtcagacg--GTGT---T---TTAATATACTACTTT--TGATTAAACTAACTAATCAATT---------A-------CAAACATTT-ATTG--ACTTTGAATTATTTTTTCCAACCAAACTAA--T-TGCAT-----------TCCAT-GTCCGTT------TT-C-------AATCAGTTGAGATATcaatttaaatccgac
gi|13 : AAAATCTTATCCAGTGAACTTAAACACAAATATCTGCACTAATTGAAAACAGATACATAAATATATATAA---ATTTGATATTGTTGGTAAGAATAATAAAAATCAAAT-AAATG
gi|14 : cttTTAAACATGAATATTTGAAGTAATTGGAAACGGATAT----ATATATATAA---ATTAGGTATTGTTGGAA--GATAATTAAAAACCAAT-TAATGTGATGATTTTTT--TAAGAAATTGattga
gi|15 : ATA-TATAT-----------T--AT---CCG-T------TT-CTGTTTTCAATTAGCTGAGATATATA-TGTTTAAGTTCATCGGACAATACTTTTGGTCCTGCTT--ATATCT
gi|16 : acaatat--AT-ATCCG-T------TTTC-------AATTAGTTCAAAAAGTCA-TGTGTAAGTTCACTGGACAAGACTTTCGGCCTTCACT--ATAatatat
gi|17 : acataaatgTTAGTATTATTAGAAACAACAATTCAAAAACAAT-AAATGTG-TGAATTTTT--AAGGAAA
gi|18 : TTAAGCTATTCA-TGTTAAAATTCACTGAACAAGACTTTTGTCCTTGAGT--ATAtaatactaaa
gi|2 : AAAAGTCGTGTCCGGTGAATCTAAACATA-------GAACGTATTAAAGACGG--------ATGTATATAATATATTTGGTGTTGTTGGAAAGAACAATTCATTGCTAAT-AAATGTG-TGAAATATA--GAAAAAATTGATG-GC-TAGTTTTAT-CAAAAGTGTTGTTTTTTTGTGT-------------GTT--TTTTTA-AAA-AA-TGGCAATATTCTCGAAAGTTATAC----ATGTTCTAATAAGTAGCAC---CAGCA-GTTT-GTATTTTAACT-T-----TT---AGTA--T-------CTGGTG--------------TCTCATCCGTATAA-----A--TC-AG--TCGGA--ATCT-TT----T--GT--------TTTTGCAA----TG-TCTATACGCAGACCAT---GT--ACT----GCATTAAGCAATT-TTTTCA------T---CA---ATTCACAACCGAAACTAACATTTACA-AAC------TA------CAAATTGTTAGTGCTGCTTATCAGAAC---A---------T-GTGCAACCTTCAAAATC---ACAGTAAGTGC---T---TTAA-ACACAAGTTC--TGGTAGCACTAACCAATACATTTATT-AAA----------ACACATTT-AATG--GCTTTGAATTGTTCTTTCAAACAAAACTAAGTT-CATG------------T--ATAATCAA-TGCAATATC-C-------CATTAGTTCAG----TTA-TGTTTAAAGTCACCTGAAAAGACTTTTGGTATTGAGT--
gi|3 : AT------TT------CAAACTACTGATGCTGTTAAATAGAAC---A-TG---------TGTAACTTTCAAAT-C---ATAGTCCGTATCT-T---TTAA-ACACCAATTA--TTATGAAAATAAACCTTCAATTTCGTCAAATAT-----TTACAAATGC-ATTA--GCTTTCGATTGTTCTTTCCAACGATACCAAATggccttgcgtatatat
gi|3 : taatggaatgcacctgaccgcccac--GCATCA-GTAGTTTGAAA----TG-TCTATGCGCTGACAAT---GT--GCT----GCACTGAGCAG---CGCTAA------C---GGGGAA--CACACCCGATATTC--------A-AAT------TGAGCATCCAAATTACAGACGCTACTTATTG-------A-TG-CAGATT-GTGTAATTTTCAAAAAC---AC-------------------------CACCTT--TGATAAAACTAA--------------CAAA--------TCA---ATTT---------TTTAAATAA--------AATAAAACCAACTT-TGTAT--------------AT-GTCCG-T------TTTC-------AATCAGTTCAGGTATTCG-TGTTTGCGTTCACCGGACAATACATTCAGAGTTAATTAAATGTTTCGTAgtctatgcgctgacaatgtgctgcactgagcagcgctaacggggaacacacccgatattcaaattgagcatccaaattacagacgctacttattgatgcagattgtgtaattttcaaaaacaccacctttgataaaactaacaaatcaattttttaaataaaataaaaccaactttgtatatgtccgttttcaatcagttcaggtattcgtgtttgcgttcaccggacaatacattcagagttaattaaatgtttcgta
gi|4 : taatggaatgcacctgaccgcccacatttggtatcgttggaaagaacaatcgaaagctaatgcatttgtaaatatttgacgaaattgaaggtttattttcataataattggtgtttaaaagatacggactatgatttgaaagttacacatgttctatttaacaTCTTGTCCTGTGATTTTAAATTTGAGTATCTGAACTCATTTGAAACGG--------ATAAGTATAA---ATTTGATATTATTGGAAAGAACAATTTGAAGCTAATAAAATGTG-TGAATTTTG--GAAAAAAAATATTGGT-TAGTTTTAT-TAACAGTG------------GT-------------GTT--T----G-AAATAACAGATTGTATTCTTGAAAATTACACAAG-A---TCTAATGAGTAGCAC---TAACA-GTTT-GTGTGTTCATT-TCT--G--------G--TA-T-CG---GATA--------------CC---------AAA-----ATTTTGAA----GAA--AT-TGCT----C--G-----------TTGCAGTACCGG-TTCATA-ATACACGA---------------GTATTGAACAA---CGTACA------CTGGGA---A--CACGCCAGATACTA--------A-AAT-------------------CGCTGGTATTAATCATAAGATC---A-T------T---TGCAACTTTCTGAATC---ACAGTCAGT-T---T---TTAA-A
gi|4 : aatattt---GT--ACT----GCAACGAGCAATTTC-TTCAAAATTTT---GG--------TATCCGATACCA--------G-AAA------TGAACACACAAACTGTTAGTGCTACTCATTAGA-------T--C---TT-GTGTAATTTTCAAGAAT---ACAAT--CTGT---TATTTCAA-ACACCACTGT--TAATAAAACTAACCAATATTTTTTTTCCAAAAT-----TCACACATTTTATTA--GCTTCAAATTGTTCTTTCCAATAATATCAAATT-TATAC-----------T---T-ATCCG-T------TT-CA------AATGAGTTCAGATACTCA-AATTTAAAATCACAGGACAAGAGATTTGACCTTGGGT--ATgatttgaccttgggtat
gi|5 : aatattttttaaaaactgactgtgattcagaaagttgcaaatgatcttatgattaataccagcgattttagtatctggcgtgttcccagtgtacgttgttcaatactcgtgtattatgaaccgTGAGCAG-CGATTCTGT--ACA----G-ATTGAGCGA---CGCTCA------CTAGGG---A--CACACCCCATTTTA--------A-AATCTAACATA------CAAACTGCTAGTGTTACTTAT-AGAAC---AAGG-C---TTAGTGTAACTGTCAAA----------------T---T---CTAA-ACGCCACTTT--TGAT-----------------TTCTTTAAGAAT-----TCACACATTA-ATTA--GCTTT-AATT--TTTTCCCATCAATACAATATTATATATAATTATAATTAT--AT-ATCCG-T------TTTC-------ATTTAGTTCAGATAGTCA-TGTTTAAGTTCTCCGGATAATACTTTTGGCC
gi|5 : TATAACAT-TGT--GTT---AGTA-------CACCTTGTAAA------------CCA-GT--GCAAAA-----A--TTGAG--CAGCG--AT-T-C-----T--GTA-CA-G--atttttgcactggtttacaaggtgtactaacacaatgttatactg
gi|6 : ggccaaaagtattatccggagaacttaaacatgactatctgaactaaatgaaaacggatatataattataattatatataatattgtattgatgggaaaaaattaaagctaattaatgtgtgaattcttaaagaaatcaaaagtggcgtttagaatttgacagttacactaagccttgttctataagtaacactagcagtttgtatgttagattttaaaatggggtgtgtccctagtgagcgtcgctcaatTTTT--TAA-AAGTTGATAAGT-AAGTTTTAT-CGAAAGTAA-----------GTTTCATCGAAAGAAGTTATT----A-AAA-AACTGACTGTGTTTTTGAAAGTTGCA--AAC--GTTCTAATTAGTACTAC---TAGCATATTTAGTACCGGAAGT-G-T--GTTTTGAAAG--CG-T-TGCTAAATG--------------CCT-AT--GCGAAACCGTGA--TTTTGTTCTAGGTCATCT-TT----T--GCA-CA-G--ACATGTA-----GG-TCTAAATGCAGACAGT---CTTCACTCAGTGCACTGGGCAA---CGCTCA------CGGGGG---A--CACACCCAATACAA--------ACAATTTACA-TG------CAAACTTCTGGTTTTACATATTGGAActg
gi|7 : AATTCAAAGC---T-AAAAGT--T--ATTTTT--GAAGAATTTGATTTGT-TAGTTTTATA----A-----------------------------------T----A--------TAACTGTGTTTTTGAAAGTTAC----GCATGTTCTTATAACCAGCAC---CATCA-GTTT-ACATGTTAAACGT-T--GTT---AATG--GG-TGTGTCTCGTGAGAGTTGATAAATATCT-GG--GCAAAA-----G----GAG--C-AGA--AT-T-CTGCTCTCGGCT-CATG--GTTTGCAA----GG-TCTATGCGCAGACGAT---TC--ACT----ACATTGAGCAA---TGATCAAAG---G---GG---A--CATGACCGATACTA--------A-ACT------T--------AAACTG
gi|8 : ACATGA-CATTTTTTAA--AGTTACACATACAACA-GTTT-GTATGTATAAT-T-TTGGTT----TTGGGTGAT-CGCC--GCG--------------CCT-TT--GCACAA-----A--TTAAG--GCGGA--AT-T-CT----T--GAA-CA-G--GCTTGCAA----GGTTTTATGTGACGACGAT---GT--CCT----GCCCTGAGCAA-----------------------------------ATTTTA--------C-A--------TG------GAAACTGTTGGTGATGGTTATTGAAACTGAA-CG-A---TT-ATGTCGCCTACAAAAACCAGACGGT--AT-T---T---TAAA-ACACTACTTTTGTGATAAAACTtgcgctgaacgtaaaactga
gi|9 : T---T---TCAA-ACACAACTCT--TGATAAAAC-AA--AAT-GATTTCTTCAAAAAT-----TCACACATTT-ATTATAGCTATCAGTTGTTCTTTCCTGCAGTACTAA--T-CATATA----------T--AA-ATTCATT------TT-C-------AACGAGTTCAGATATACATTTTTTAAGATCACCAGACAATACTTGTGGCCTGCAGT--ATAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111
lowQualScore : 33333333 111 22 0000000000000000000000000000000000000000000000000 22222222 111 6666666666666666666666666666666666666666666666 111111 11111111 1111 1111111111111111111111 11111 555555555555555555555555555 555555555555555555555555555 444444444444444 33333333333333333 1111111 22222222 333333333333333 111111 111111111
lowQualScore : 1 1 88888888 111 0 1 111 5 5 5 777 0 55 8 8888888888888888888888888888888888888888888888888 8 5 99999999 1 111 6 6 1 0 4444444444444444444444444444444444444444444444 444444 55555555 3 7777 77 6666666666666666666666 0 22222 5 5 777 66 9999 888888888888888888888888888 0 111111111111111111111111111 0 1 2 333333333333333 4 88888888888888888 666 3 55 6666666 0 11 11111111 4 66 4 0 6666 000000000000000 55 8 111111 999999999 4 1 1 0 66
lowQualScore : . . ........ ... . . ... . . . ... . .. . ................................................. . . ........ . ... . . . . .............................................. ...... ........ . .... .. ...................... . ..... . . ... .. .... ........................... . ........................... . . . ............... . ................. ... . .. ....... . .. ........ . .. . . .... ............... .. . ...... ......... . . . . ..
lowQualScore : 8 0 33333333 777 1 4 111 4 0 7 999 2 00 0 4444444444444444444444444444444444444444444444444 0 0 88888888 8 777 7 7 0 3 7777777777777777777777777777777777777777777777 999999 33333333 0 4444 99 0000000000000000000000 4 33333 7 4 888 11 4444 888888888888888888888888888 1 333333333333333333333333333 1 0 0 888888888888888 9 88888888888888888 444 6 55 0000000 1 99 22222222 4 11 7 1 4444 999999999999999 33 0 555555 000000000 0 0 2 1 11
consensus : NAAAAGTCTTGTCCGGTGAACTTAAACATGAATATCTGAACTAATTGAAAACGG--------ATATATATAA---ATTTGGTATTGTTGGAAAGAACAATTCAAAGCCAAT-AAATGTG-TGAATTTTT--NAAGAAATTGATT-GT-TAGTTTTATACAAAAGTGT-----------GT-------------GTT--T----A-AAA-AACTGACTGTGTTTTTGAAAGTTACACGAGCATGTTCTAATAAGTAGCAC---CAGCA-GTTT-GTATGTNAAAT-T-T--GTT---ANTG--TG-T-CGCCTNGTG--------------CCT-GT--GCAAAA-----A--TTGAG--CCGGG--AT-T-CT----T--GCA-CA-G--GCTTGCAA----GG-TCTATGCGCAGACGAT---GT--ACT----GCACTGAGCAA---CGCTCA------C---GG---A--CACACCCGATACTA--------A-AAT------TG------CAAACTGCTGGTGCTACTTATTAGAAC---A-TG-C---TT-GTGTAACTTTCAAAAAC---ACAGT--GTGT---T---TTAA-ACACCACTTT--TGATAAAACTAACCAATCAATTTCTTCAAAAAT-----TCACACATTT-ATTG--GCTTTGAATTGTTCTTTCCAACAATACCAAATT-TATAT-----------T--AT-ATCCG-T------TT-C-------AATTAGTTCAGATATTCA-TGTTTAAGTTCACCGGACAANACTTTCGGCCTTGAGT--ATATTTCGTAT
Reference ( family-5668 ) : NAAAAGTCTTGTCCGGTGAACTTAAACATGAATATCTGAACTAATTGAAAACGG--------ATATATATAA---ATTTGGTATTGTTGGAAAGAACAATTCAAAGCCAAT-AAATGTG-TGAATTTTT--NAAGAAATTGATT-GT-TAGTTTTATACAAAAGTGT-----------GT-------------GTT--T----A-AAA-AACTGACTGTGTTTTTGAAAGTTACACGAGCATGTTCTAATAAGTAGCAC---CAGCA-GTTT-GTATGTNAAAT-T-T--GTT---ANTG--TG-T-CGCCTNGTG--------------CCT-GT--GCAAAA-----A--TTGAG--CCGGG--AT-T-CT----T--GCA-CA-G--GCTTGCAA----GG-TCTATGCGCAGACGAT---GT--ACT----GCACTGAGCAA---CGCTCA------C---GG---A--CACACCCGATACTA--------A-AAT------TG------CAAACTGCTGGTGCTACTTATTAGAAC---A-TG-C---TT-GTGTAACTTTCAAAAAC---ACAGT--GTGT---T---TTAA-ACACCACTTT--TGATAAAACTAACCAATCAATTTCTTCAAAAAT-----TCACACATTT-ATTG--GCTTTGAATTGTTCTTTCCAACAATACCAAATT-TATAT-----------T--AT-ATCCG-T------TT-C-------AATTAGTTCAGATATTCA-TGTTTAAGTTCACCGGACAANACTTTCGGCCTTGAGT--ATATTTCGTAT
gi|1 : AAAAGTCTTGTCTGGTGAACTTACACATGATTATCTGAAATATTTGAATACAG--------ATATATATAA---ATTTGGTATTGATGGAAAGGACCATTCAATGTCAAT-AAATGTG-TGAATTTTT--TAAGTAATTGATT-GTATAGTTTTATATAGAAATAT-----------GT-------------GTT--T----ACAAA-AACTGACTGTGTTTTTGAAAGTAACATGAGTATATTCTAATAGGTAGCAC---TAGCA-ATTT-GCATGTAAAAT-T-T--GTT---ACTG--TG-T-CCCCCTGTG--------------CCT-GT--GCAAAA-----A--TTGAG--CCGGG--AT-T-CT----T--GCA-CA-G--GCTTGCAA----GG-TTTATGTGCAGACGAT---GT--ACT----GCACTGAGCAA---ACATCA------T---GG---A--CACACCAGATACTT--------A-AAT------T-------TAAACTTCTGGTGCTTTTAATTAGAAC---A-TGACAG-TT-GTGTAACTTTAAAAAAC---AGAGT--ATGTGTAT---TTAA-ACACCACTTT--TGATAAAACTAACCAATCAATTTCTTCGAAGAT-----TCACACATTT-ATTG--GCTTTGGATTGTTCTTTCGAATAATACCAAATT-TATAT-----------T--AT-ATCTG-T------TT-C-------AAATAGTTCAAATATTGG-TGTTAAAGTTCACCGGACAAAATTTATGGCTTTAAAT--ATATTTCATAT
gi|10 : aAAAAAC---AT--------T---T---TTAA-ACACCACTTT--GGATAAAACTAACAGATCAATTTCT-CAAAAAAAAAAATCTCACATTG-ATTG--GTTTTGAATTGTTCTTTCTAACAATGCCAAA-------------------------------T------TT-C-------AATTACTTCAGATGTTCA-TGTTAAAATTCACCGTACACAACTTTCGGCCTTGTGT--
gi|11 : taAAAAGTCTTGTCCGCTGAACTTAAACGGGAACATCTGACTTAATTGAAAACAG--------ATATATATAA---ATTTGGTATTGTTGGTAAGAAC-ATTGA---CTAAT-ATAGATA-TAAGTCCTTGGTAAGAA
gi|12 : ttaatattgatagatgtcagacg--GTGT---T---TTAATATACTACTTT--TGATTAAACTAACTAATCAATT---------A-------CAAACATTT-ATTG--ACTTTGAATTATTTTTTCCAACCAAACTAA--T-TGCAT-----------TCCAT-GTCCGTT------TT-C-------AATCAGTTGAGATATcaatttaaatccgac
gi|13 : AAAATCTTATCCAGTGAACTTAAACACAAATATCTGCACTAATTGAAAACAGATACATAAATATATATAA---ATTTGATATTGTTGGTAAGAATAATAAAAATCAAAT-AAATG
gi|14 : cttTTAAACATGAATATTTGAAGTAATTGGAAACGGATAT----ATATATATAA---ATTAGGTATTGTTGGAA--GATAATTAAAAACCAAT-TAATGTGATGATTTTTT--TAAGAAATTGattga
gi|15 : ATA-TATAT-----------T--AT---CCG-T------TT-CTGTTTTCAATTAGCTGAGATATATA-TGTTTAAGTTCATCGGACAATACTTTTGGTCCTGCTT--ATATCT
gi|16 : acaatat--AT-ATCCG-T------TTTC-------AATTAGTTCAAAAAGTCA-TGTGTAAGTTCACTGGACAAGACTTTCGGCCTTCACT--ATAatatat
gi|17 : acataaatgTTAGTATTATTAGAAACAACAATTCAAAAACAAT-AAATGTG-TGAATTTTT--AAGGAAA
gi|18 : TTAAGCTATTCA-TGTTAAAATTCACTGAACAAGACTTTTGTCCTTGAGT--ATAtaatactaaa
gi|2 : AAAAGTCGTGTCCGGTGAATCTAAACATA-------GAACGTATTAAAGACGG--------ATGTATATAATATATTTGGTGTTGTTGGAAAGAACAATTCATTGCTAAT-AAATGTG-TGAAATATA--GAAAAAATTGATG-GC-TAGTTTTAT-CAAAAGTGTTGTTTTTTTGTGT-------------GTT--TTTTTA-AAA-AA-TGGCAATATTCTCGAAAGTTATAC----ATGTTCTAATAAGTAGCAC---CAGCA-GTTT-GTATTTTAACT-T-----TT---AGTA--T-------CTGGTG--------------TCTCATCCGTATAA-----A--TC-AG--TCGGA--ATCT-TT----T--GT--------TTTTGCAA----TG-TCTATACGCAGACCAT---GT--ACT----GCATTAAGCAATT-TTTTCA------T---CA---ATTCACAACCGAAACTAACATTTACA-AAC------TA------CAAATTGTTAGTGCTGCTTATCAGAAC---A---------T-GTGCAACCTTCAAAATC---ACAGTAAGTGC---T---TTAA-ACACAAGTTC--TGGTAGCACTAACCAATACATTTATT-AAA----------ACACATTT-AATG--GCTTTGAATTGTTCTTTCAAACAAAACTAAGTT-CATG------------T--ATAATCAA-TGCAATATC-C-------CATTAGTTCAG----TTA-TGTTTAAAGTCACCTGAAAAGACTTTTGGTATTGAGT--
gi|3 : AT------TT------CAAACTACTGATGCTGTTAAATAGAAC---A-TG---------TGTAACTTTCAAAT-C---ATAGTCCGTATCT-T---TTAA-ACACCAATTA--TTATGAAAATAAACCTTCAATTTCGTCAAATAT-----TTACAAATGC-ATTA--GCTTTCGATTGTTCTTTCCAACGATACCAAATggccttgcgtatatat
gi|3 : taatggaatgcacctgaccgcccac--GCATCA-GTAGTTTGAAA----TG-TCTATGCGCTGACAAT---GT--GCT----GCACTGAGCAG---CGCTAA------C---GGGGAA--CACACCCGATATTC--------A-AAT------TGAGCATCCAAATTACAGACGCTACTTATTG-------A-TG-CAGATT-GTGTAATTTTCAAAAAC---AC-------------------------CACCTT--TGATAAAACTAA--------------CAAA--------TCA---ATTT---------TTTAAATAA--------AATAAAACCAACTT-TGTAT--------------AT-GTCCG-T------TTTC-------AATCAGTTCAGGTATTCG-TGTTTGCGTTCACCGGACAATACATTCAGAGTTAATTAAATGTTTCGTAgtctatgcgctgacaatgtgctgcactgagcagcgctaacggggaacacacccgatattcaaattgagcatccaaattacagacgctacttattgatgcagattgtgtaattttcaaaaacaccacctttgataaaactaacaaatcaattttttaaataaaataaaaccaactttgtatatgtccgttttcaatcagttcaggtattcgtgtttgcgttcaccggacaatacattcagagttaattaaatgtttcgta
gi|4 : taatggaatgcacctgaccgcccacatttggtatcgttggaaagaacaatcgaaagctaatgcatttgtaaatatttgacgaaattgaaggtttattttcataataattggtgtttaaaagatacggactatgatttgaaagttacacatgttctatttaacaTCTTGTCCTGTGATTTTAAATTTGAGTATCTGAACTCATTTGAAACGG--------ATAAGTATAA---ATTTGATATTATTGGAAAGAACAATTTGAAGCTAATAAAATGTG-TGAATTTTG--GAAAAAAAATATTGGT-TAGTTTTAT-TAACAGTG------------GT-------------GTT--T----G-AAATAACAGATTGTATTCTTGAAAATTACACAAG-A---TCTAATGAGTAGCAC---TAACA-GTTT-GTGTGTTCATT-TCT--G--------G--TA-T-CG---GATA--------------CC---------AAA-----ATTTTGAA----GAA--AT-TGCT----C--G-----------TTGCAGTACCGG-TTCATA-ATACACGA---------------GTATTGAACAA---CGTACA------CTGGGA---A--CACGCCAGATACTA--------A-AAT-------------------CGCTGGTATTAATCATAAGATC---A-T------T---TGCAACTTTCTGAATC---ACAGTCAGT-T---T---TTAA-A
gi|4 : aatattt---GT--ACT----GCAACGAGCAATTTC-TTCAAAATTTT---GG--------TATCCGATACCA--------G-AAA------TGAACACACAAACTGTTAGTGCTACTCATTAGA-------T--C---TT-GTGTAATTTTCAAGAAT---ACAAT--CTGT---TATTTCAA-ACACCACTGT--TAATAAAACTAACCAATATTTTTTTTCCAAAAT-----TCACACATTTTATTA--GCTTCAAATTGTTCTTTCCAATAATATCAAATT-TATAC-----------T---T-ATCCG-T------TT-CA------AATGAGTTCAGATACTCA-AATTTAAAATCACAGGACAAGAGATTTGACCTTGGGT--ATgatttgaccttgggtat
gi|5 : aatattttttaaaaactgactgtgattcagaaagttgcaaatgatcttatgattaataccagcgattttagtatctggcgtgttcccagtgtacgttgttcaatactcgtgtattatgaaccgTGAGCAG-CGATTCTGT--ACA----G-ATTGAGCGA---CGCTCA------CTAGGG---A--CACACCCCATTTTA--------A-AATCTAACATA------CAAACTGCTAGTGTTACTTAT-AGAAC---AAGG-C---TTAGTGTAACTGTCAAA----------------T---T---CTAA-ACGCCACTTT--TGAT-----------------TTCTTTAAGAAT-----TCACACATTA-ATTA--GCTTT-AATT--TTTTCCCATCAATACAATATTATATATAATTATAATTAT--AT-ATCCG-T------TTTC-------ATTTAGTTCAGATAGTCA-TGTTTAAGTTCTCCGGATAATACTTTTGGCC
gi|5 : TATAACAT-TGT--GTT---AGTA-------CACCTTGTAAA------------CCA-GT--GCAAAA-----A--TTGAG--CAGCG--AT-T-C-----T--GTA-CA-G--atttttgcactggtttacaaggtgtactaacacaatgttatactg
gi|6 : ggccaaaagtattatccggagaacttaaacatgactatctgaactaaatgaaaacggatatataattataattatatataatattgtattgatgggaaaaaattaaagctaattaatgtgtgaattcttaaagaaatcaaaagtggcgtttagaatttgacagttacactaagccttgttctataagtaacactagcagtttgtatgttagattttaaaatggggtgtgtccctagtgagcgtcgctcaatTTTT--TAA-AAGTTGATAAGT-AAGTTTTAT-CGAAAGTAA-----------GTTTCATCGAAAGAAGTTATT----A-AAA-AACTGACTGTGTTTTTGAAAGTTGCA--AAC--GTTCTAATTAGTACTAC---TAGCATATTTAGTACCGGAAGT-G-T--GTTTTGAAAG--CG-T-TGCTAAATG--------------CCT-AT--GCGAAACCGTGA--TTTTGTTCTAGGTCATCT-TT----T--GCA-CA-G--ACATGTA-----GG-TCTAAATGCAGACAGT---CTTCACTCAGTGCACTGGGCAA---CGCTCA------CGGGGG---A--CACACCCAATACAA--------ACAATTTACA-TG------CAAACTTCTGGTTTTACATATTGGAActg
gi|7 : AATTCAAAGC---T-AAAAGT--T--ATTTTT--GAAGAATTTGATTTGT-TAGTTTTATA----A-----------------------------------T----A--------TAACTGTGTTTTTGAAAGTTAC----GCATGTTCTTATAACCAGCAC---CATCA-GTTT-ACATGTTAAACGT-T--GTT---AATG--GG-TGTGTCTCGTGAGAGTTGATAAATATCT-GG--GCAAAA-----G----GAG--C-AGA--AT-T-CTGCTCTCGGCT-CATG--GTTTGCAA----GG-TCTATGCGCAGACGAT---TC--ACT----ACATTGAGCAA---TGATCAAAG---G---GG---A--CATGACCGATACTA--------A-ACT------T--------AAACTG
gi|8 : ACATGA-CATTTTTTAA--AGTTACACATACAACA-GTTT-GTATGTATAAT-T-TTGGTT----TTGGGTGAT-CGCC--GCG--------------CCT-TT--GCACAA-----A--TTAAG--GCGGA--AT-T-CT----T--GAA-CA-G--GCTTGCAA----GGTTTTATGTGACGACGAT---GT--CCT----GCCCTGAGCAA-----------------------------------ATTTTA--------C-A--------TG------GAAACTGTTGGTGATGGTTATTGAAACTGAA-CG-A---TT-ATGTCGCCTACAAAAACCAGACGGT--AT-T---T---TAAA-ACACTACTTTTGTGATAAAACTtgcgctgaacgtaaaactga
gi|9 : T---T---TCAA-ACACAACTCT--TGATAAAAC-AA--AAT-GATTTCTTCAAAAAT-----TCACACATTT-ATTATAGCTATCAGTTGTTCTTTCCTGCAGTACTAA--T-CATATA----------T--AA-ATTCATT------TT-C-------AACGAGTTCAGATATACATTTTTTAAGATCACCAGACAATACTTGTGGCCTGCAGT--ATAT
blockSeqs : A T ATACATAA TAT G AAT T A A GGT TG . CAAAAGTGTTGTTTTTTTGTGTGTTTTTTTAA T C TGACATT A ATA T A T GTTGTTAATGGGTGTGTCTCGTGAGAGTTGATAAATA TCATCC CCGTGA G TTCT TC TCTGCTCTCGGCTCATG GTACC T C TCT TC CAGT TTTCTTCAAAATTTTGG ACATTTACAAACTA C A ATGCAGATT A ATAGTCCGTATCT ATT T TG CAGATCA TC AAAAAAAA T TA G ATTA TAATTATAATTAT AA T GCAATA CTGTTTTC T A C AA
blockSeqs : A C ATAT . A AAA A . . T AA . CGAAAGTAAGTTTCATCGAAAGAAGTTATTAA . C CAAGA G . . . T GTGTTTTGAAAGCGTTGCTAAATG AGT ATT G TC . CTTTTGCACAG A . C . . . TTTTTTCATCAATT AAATTGAGCATC T A TGAACGATT T ACAGTAAGTGC . . . CTAATCA TC TAT . . G ATA TTCC G T . TC . T T .
blockSeqs : A G . . A AAA C . . A TT . TAACAGTGGTGTTTGA . . GCATG T . . . A TTTGGTTTTGGGTGATCGCCGCG TAT A T CA . TCTTGAACAG A . A . . . CGCTAACGGGGAA GAAATGAACACA T T AAGGCTTA A CAGACGGTATT . . . CCAATAC TT AAT . . G GTT TAT A . . TC . G C .
blockSeqs : G C . . C TTG C . . G G . AATA . . CATG A . . . G TGTGTTAGTACACCTTGTAAA TGG A G GC . TCTGTACAG A . T . . . CGTACACTGGGAA AAATCTAACATA A A TCTT T ACAGTCAGTT . . . ACCTTCA TC AAT . . C CTT TT G . . CA . G T .
blockSeqs : . C . . C AAG T . . G AACG . . . . T TTTAGTATCTGGTG TTT G A C . CTTTTGT A . C . . . CGCTCACTAGGGA ACAATTTACATG T A ATG A ACAATCTGT . . . CCAATAT C AAT . . A ATT CT A . . TC . G T .
blockSeqs : T AAG T . . T A TCTGGTATCGGATA . A . . . TGCTCG . . T . . . CGCTCACGGGGGA AACTT T A ATT A ATT . . . AATG T A . . A A T A . . C . T C .
blockSeqs : C . . . G . . . . TGATCAAAGGGGA AAAT T . AT . AC . . . . C . . . C T T A . . C . G T .
blockSeqs : . . . . CATG . . . T . . . . . . . . . T . . . . C . T T .
blockSeqs : . . . . . . C . T T
blockSeqs : . .
blockSeqCons : TN CGAAAGTGGTGTTTAA********************************* CACG**** TTTGGTGTCTNGTAG******************************* CGCTCACGGGGGA************** AAATTTACATG**************** ATT************ ACAGTCGTT******** TT*************
originalCons : NAAAAGTCTTGTCCGGTGAACTTAAACATGAATATCTGAACTAATTGAAAACGG--------ATATATATAA---ATTTGGTATTGTTGGAAAGAACAATTCAAAGCCAAT-AAATGTG-TGAATTTTT--NAAGAAATTGATT-GT-TAGTTTTATACAAAAGTGT-----------GT-------------GTT--T----A-AAA-AACTGACTGTGTTTTTGAAAGTTACACGAGCATGTTCTAATAAGTAGCAC---CAGCA-GTTT-GTATGTNAAAT-T-T--GTT---ANTG--TG-T-CGCCTNGTG--------------CCT-GT--GCAAAA-----A--TTGAG--CCGGG--AT-T-CT----T--GCA-CA-G--GCTTGCAA----GG-TCTATGCGCAGACGAT---GT--ACT----GCACTGAGCAA---CGCTCA------C---GG---A--CACACCCGATACTA--------A-AAT------TG------CAAACTGCTGGTGCTACTTATTAGAAC---A-TG-C---TT-GTGTAACTTTCAAAAAC---ACAGT--GTGT---T---TTAA-ACACCACTTT--TGATAAAACTAACCAATCAATTTCTTCAAAAAT-----TCACACATTT-ATTG--GCTTTGAATTGTTCTTTCCAACAATACCAAATT-TATAT-----------T--AT-ATCCG-T------TT-C-------AATTAGTTCAGATATTCA-TGTTTAAGTTCACCGGACAANACTTTCGGCCTTGAGT--ATATTTCGTAT
finalCons : NAAAAGTCTTGTCCGGTGAACTTAAACATGAATATCTGAACTAATTGAAAACGG--------ATATATATAA---ATTTGGTATTGTTGGAAAGAACAATTCAAAGCCAAT-AAATGTG-TGAATTTTT--NAAGAAATTGATTNGT-TAGTTTTATCGAAAGTGGTGTTTAA---------------------------------AA-AACTGACTGTGTTTTTGAAAGTTACACACG----TTCTAATAAGTAGCAC---CAGCA-GTTT-GTATGTNAAATTTTGGTGTCTNGTAG-------------------------------CCT-GT--GCAAAA-----A--TTGAG--CCGGG--AT-T-CT----T--GCA-CA-G--GCTTGCAA----GG-TCTATGCGCAGACGAT---GT--ACT----GCACTGAGCAACGCTCACGGGGGA--------------CACACCCGATACTAAAATTTACATG----------------CAAACTGCTGGTGCTACTTATTAGAACATT------------GTGTAACTTTCAAAAACACAGTCGTT--------T---TTAA-ACACCACTTT--TGATAAAACTAACCAATCAATTTCTTCAAAAAT-----TCACACATTT-ATTG--GCTTTGAATTGTTCTTTCCAACAATACCAAATT-TATATT-------------AT-ATCCG-T------TT-C-------AATTAGTTCAGATATTCA-TGTTTAAGTTCACCGGACAANACTTTCGGCCTTGAGT--ATATTTCGTAT
Alignments
lowQualScore : 33333333 111 111 11 111 88888888888888888888888888888888888888888 111111 2222222 9999999999999999999999999999999999999999999999999999 22222222 1111111111111111111111 1111 1111111111111 22222222222 33333333333333333333 555555555555555555555 2222222 111111 3333333333333333333333333333333333333333
lowQualScore : 0 0 22222222 000 000 0 3 4 66 0 888 1 11 6 555 1 33333333333333333333333333333333333333333 6 2 555555 1 2 6 6 1111111 88 3 99 1111111111111111111111111111111111111111111111111111 33333333 99 77 6666666666666666666666 0 2222 5 5 3333333333333 1 77 5 111 1 77 5 99999999999 0 2 66 77777777777777777777 444444444444444444444 66 0 9999999 1 3 999999 0 888 6 1 3 6666 7777777777777777777777777777777777777777 0 4 1 0 0 1 66
lowQualScore : . . ........ ... ... . . . .. . ... . .. . ... . ......................................... . . ...... . . . . ....... .. . .. .................................................... ........ .. .. ...................... . .... . . ............. . .. . ... . .. . ........... . . .. .................... ..................... .. . ....... . . ...... . ... . . . .... ........................................ . . . . . . ..
lowQualScore : 3 3 99999999 000 000 1 7 4 44 1 777 9 00 7 222 0 55555555555555555555555555555555555555555 7 5 777777 8 5 7 7 7777777 55 3 22 4444444444444444444444444444444444444444444444444444 11111111 66 99 0000000000000000000000 4 1111 7 4 5555555555555 7 99 7 999 7 99 0 00000000000 2 2 99 77777777777777777777 555555555555555555555 99 1 9999999 4 9 444444 3 333 6 4 0 0000 0000000000000000000000000000000000000000 8 4 0 7 2 4 99
consensus : NAAAAGTCTTGTCCGGTGAACTTAAACATGAATATCTGAACTAATTGAAAACGG--------ATAT---ATATAA---ATTTGGTATTGTTGGAAAGAACAATTCAAAGCCAAT-AAATGTG-TGAATTTTT--NAAGAAATTGATTGGT-TAGTTTTAT-CAAAAGT-A------------GT-------------GT--TT----A-AAA-AACTGACTGTGTTTTTGAAAGTTACAC----ATGTTCTAATAAGTAGCACCAGCA-GTTT-GTA-------TGTNAAATTT--TG---------GTGTCTG---GT---A--------G-C----------CTGT--GCAAAA-----A--TTGAGCCGGG--AT-T-CT----T--GCA-CA-G--GCTTGCAA----GG-TCTATGCGCAGACGAT---GT--AC----TGCACTGAGCAACGCT--CA-CGGGGGA--CACGCCCGATACTAA-AATTTA-CA---TGCAAACTGCTGGTGCTGCTTATTA--GAAC------A----T------T-GTGTAACTTTCAAAAACACAGT---C-G---T---TTTTAAACACCACTTT--TGATAAAACTAACCAATCAATTTCTTCAAAAAT-----TCACACATTTATTG--GCTTTGAATTGTTCTTTCCAACAATACCAAATT-TATAT-----------TAT-ATCCG-T------TTTC-------AATTAGTTCAGATATTCA-TGTTTAAGTTCACCGGACAANACTTTCGGCCTTGAGT--ATATTTCGTAT
Reference ( family-5668 ) : NAAAAGTCTTGTCCGGTGAACTTAAACATGAATATCTGAACTAATTGAAAACGG--------ATAT---ATATAA---ATTTGGTATTGTTGGAAAGAACAATTCAAAGCCAAT-AAATGTG-TGAATTTTT--NAAGAAATTGATTNGT-TAGTTTTAT-CGAAAGT-G------------GT-------------GT--TT----A-AAA-AACTGACTGTGTTTTTGAAAGTTACAC----ACGTTCTAATAAGTAGCACCAGCA-GTTT-GTA-------TGTNAAATTT--TG---------GTGTCTN---GT---A--------G-C----------CTGT--GCAAAA-----A--TTGAGCCGGG--AT-T-CT----T--GCA-CA-G--GCTTGCAA----GG-TCTATGCGCAGACGAT---GT--AC----TGCACTGAGCAACGCT--CA-CGGGGGA--CACACCCGATACTAA-AATTTA-CA---TGCAAACTGCTGGTGCTACTTATTA--GAAC------A----T------T-GTGTAACTTTCAAAAACACAGT---C-G---T---TTTTAAACACCACTTT--TGATAAAACTAACCAATCAATTTCTTCAAAAAT-----TCACACATTTATTG--GCTTTGAATTGTTCTTTCCAACAATACCAAATT-TATAT-----------TAT-ATCCG-T------TT-C-------AATTAGTTCAGATATTCA-TGTTTAAGTTCACCGGACAANACTTTCGGCCTTGAGT--ATATTTCGTAT
gi|1 : AAAAGTCTTGTCTGGTGAACTTACACATGATTATCTGAAATATTTGAATACAG--------ATAT---ATATAA---ATTTGGTATTGATGGAAAGGACCATTCAATGTCAAT-AAATGTG-TGAATTTTT--TAAGTAATTGATT-GTATAGTTTTATATAGAAAT-AT-----------GT-------------GT--TT----ACAAA-AACTGACTGTGTTTTTGAAAGTAACATGAGTATATTCTAATAGGTAGCACTAGCA-ATTT-GCA-------TGTAAAATTTGTTACT-------GTGTCCCCCTGT------------G-C----------CTGT--GCAAAA-----A--TTGAGCCGGG--AT-T-CT----T--GCA-CA-G--GCTTGCAA----GG-TTTATGTGCAGACGAT---GT--AC----TGCACTGAGCAAACAT--CA-TGG---A--CACACCAGATACTTA-AATTTA----------AACTTCTGGTGCTTTTAATTA--GAAC------A----TGACAGTT-GTGTAACTTTAAAAAACAGAGTATGT-G---T---ATTTAAACACCACTTT--TGATAAAACTAACCAATCAATTTCTTCGAAGAT-----TCACACATTTATTG--GCTTTGGATTGTTCTTTCGAATAATACCAAATT-TATAT-----------TAT-ATCTG-T------TT-C-------AAATAGTTCAAATATTGG-TGTTAAAGTTCACCGGACAAAATTTATGGCTTTAAAT--ATATTTCATAT
gi|10 : aAAAAACA-------------T---TTTTAAACACCACTTT--GGATAAAACTAACAGATCAATTTCT-CAAAAAAAAAAATCTCACATTGATTG--GTTTTGAATTGTTCTTTCTAACAATGCCAAA-----------------------------T------TT-C-------AATTACTTCAGATGTTCA-TGTTAAAATTCACCGTACACAACTTTCGGCCTTGTGT--
gi|11 : taAAAAGTCTTGTCCGCTGAACTTAAACGGGAACATCTGACTTAATTGAAAACAG--------ATAT---ATATAA---ATTTGGTATTGTTGGTAAGAAC-ATTGA---CTAAT-ATAGATA-TAAGTCCTTGGTAAGAA
gi|12 : ttaatattgatagatgtcagacgATATCTCAACTGATTGAAAACGG--------ACATGGAATGCAA-----TTAGTTTGGTTGGAAAAAATAATTCAAAGTCAAT-AAATGTT-TG--T-----------AATTGATTAGT-TAGTTTAAT-CAAAAGT-A------------GT-------------ATA-TT----A-AAA-CACcaatttaaatccgac
gi|13 : AAAATCTTATCCAGTGAACTTAAACACAAATATCTGCACTAATTGAAAACAGATACATAAATAT---ATATAA---ATTTGATATTGTTGGTAAGAATAATAAAAATCAAAT-AAATG
gi|14 : cttTTAAACATGAATATTTGAAGTAATTGGAAACGGATAT----ATAT---ATATAA---ATTAGGTATTGTTGGAA--GATAATTAAAAACCAAT-TAATGTGATGATTTTTT--TAAGAAATTGattga
gi|15 : ATA-TATAT-----------TAT---CCG-T------TT-CTGTTTTCAATTAGCTGAGATATATA-TGTTTAAGTTCATCGGACAATACTTTTGGTCCTGCTT--ATATCT
gi|16 : acaatatAT-ATCCG-T------TTTC-------AATTAGTTCAAAAAGTCA-TGTGTAAGTTCACTGGACAAGACTTTCGGCCTTCACT--ATAatatat
gi|17 : acataaatgTTAGTATTATTAGAAACAACAATTCAAAAACAAT-AAATGTG-TGAATTTTT--AAGGAAA
gi|18 : TTAAGCTATTCA-TGTTAAAATTCACTGAACAAGACTTTTGTCCTTGAGT--ATAtaatactaaa
gi|2 : AAAAGTCGTGTCCGGTGAATCTAAACATA-------GAACGTATTAAAGACGG--------ATGT---ATATAATATATTTGGTGTTGTTGGAAAGAACAATTCATTGCTAAT-AAATGTG-TGAAATATA--GAAAAAATTGAT-GGC-TAGTTTTAT-CAAAAGT-GTTGTTTTTTTGTGT-------------GT--TTTTTTA-AAA-AA-TGGCAATATTCTCGAAAGTTATAC----ATGTTCTAATAAGTAGCACCAGCA-GTTT-GTA-------TTTTAACTTT--TA---------GTATCTG---GT---G--------T-C----------TCATCCGTATAA-----A--TC-AGTCGGA--ATCT-TT----T--GT--------TTTTGCAA----TG-TCTATACGCAGACCAT---GT--AC----TGCATTAAGCAATTTTTTCATCA----ATTCACAACCGAAACTAA-CATTTA-CAAACTACAAATTGTTAGTGCTGCTTATCA--GAAC------A----T--------GTGCAACCTTCAAAATCACAGT---AAG---TG--CTTTAAACACAAGTTC--TGGTAGCACTAACCAATACATTTATT---AAA--------ACACATTTAATG--GCTTTGAATTGTTCTTTCAAACAAAACTAAGTT-CATG------------TATAATCAA-TGCAATATC-C-------CATTAGTTCAG----TTA-TGTTTAAAGTCACCTGAAAAGACTTTTGGTATTGAGT--
gi|3 : CAAACTACTGATGCTGTTAAATA--GAAC------A----T--------GTGTAACTTTCAAAT-CATAGT---CCG---TATCTTTTAAACACCAATTA--TTATGAAAATAAACCTTCAATTTCGTCAAATAT-----TTACAAATGCATTA--GCTTTCGATTGTTCTTTCCAACGATACCAAATggccttgcgtatatat
gi|3 : taatggaatgcacctgaccgcccac--GCATCA-GTAGTTTGAAA----TG-TCTATGCGCTGACAAT---GT--GC----TGCACTGAGCAGCGCT--AA-CGGGGAA--CACACCCGATATTCA-AATTGAGCA---TCCAAATTACAGACGCTACTTATTGATGCAG------A----T------T-GTGTAATTTTCAAAAACAC--------------------------CACCTT--TGATAAAACTAA--------------CAAA--------TCA---ATTT--------TTTAAATAA--------AATAAAACCAACTT-TGTAT------------AT-GTCCG-T------TTTC-------AATCAGTTCAGGTATTCG-TGTTTGCGTTCACCGGACAATACATTCAGAGTTAATTAAATGTTTCGTAaaatgtctatgcgctgacaatgtgctgcactgagcagcgctaacggggaacacacccgatattcaaattgagcatccaaattacagacgctacttattgatgcagattgtgtaattttcaaaaacaccacctttgataaaactaacaaatcaattttttaaataaaataaaaccaactttgtatatgtccgttttcaatcagttcaggtattcgtgtttgcgttcaccggacaatacattcagagttaattaaatgtttcgta
gi|4 : taatggaatgcacctgaccgcccacatttggtatcgttggaaagaacaatcgaaagctaatgcatttgtaaatatttgacgaaattgaaggtttattttcataataattggtgtttaaaagatacggactatgatttgaaagttacacatgttctatttaacaTCTTGTCCTGTGATTTTAAATTTGAGTATCTGAACTCATTTGAAACGG--------ATAA---GTATAA---ATTTGATATTATTGGAAAGAACAATTTGAAGCTAATAAAATGTG-TGAATTTTG--GAAAAAAAATATTGGT-TAGTTTTAT-TAACAGT-G------------GT-------------GT--TT----G-AAATAACAGATTGTATTCTTGAAAATTACAC----AAGATCTAATGAGTAGCACTAACA-GTTT-GTG-------TGTTCATTTC--TG---------GTATCGG---AT---A----------C----------C--------AAA-----ATTTTGAA--GAA--AT-TGCT----C--G-----------TTGCAGTACCGG-TTCATA-ATACACGA---------------GTATTGAACAACGTA--CA-CTGGGAA--CACGCCAGATACTAA-AAT----------------CGCTGGTATTAATCATAA--GATC------A----T------T--TGCAACTTTCTGAATCACAGT---CAG---T---TTTTAAA
gi|5 : aatatttTGAGCAG-CGATTCTGT--AC----AG-ATTGAGCGACGCT--CA-CTAGGGA--CACACCCCATTTTAA-AATCTAACA---TACAAACTGCTAGTGTTACTTAT-A--GAAC------AAGGCT------TAGTGTAACTGTCAAA---------------------TTCTAAACGCCACTTT--TGAT-----------------TTCTTTAAGAAT-----TCACACATTAATTA--GCTTT-AATT--TTTTCCCATCAATACAATATTATATATAATTATAATTATAT-ATCCG-T------TTTC-------ATTTAGTTCAGATAGTCA-TGTTTAAGTTCTCCGGATAATACTTTTGGCCgatttgaccttgggtat
gi|5 : CTT---GT---A--------AAC----------CAGT--GCAAAA-----A--TTGAGCAGCG--AT-T-C-----T--GTA-CA-G--atttttgcactggtttacaaggtgtactaacacaatgttatactg
gi|6 : ggccaaaagtattatccggagaacttaaacatgactatctgaactaaatgaaaacggatatataattataattatatataatattgtattgatgggaaaaaattaaagctaattaatgtgtgaattcttaaagaaatcaaaagtggcgtttagaatttgacagttacactaagccttgttctataagtaacactagcagtttgtatgttagattttaaaatggggtgtgtccctagtgagcgtcgctcaatTTTT--TAA-AAGTTGATAAGT-AAGTTTTAT-CGAAAGTAA------------GTTTCATCGAAAGAAGTTATT----A-AAA-AACTGACTGTGTTTTTGAAAGTTGCAA----ACGTTCTAATTAGTACTACTAGCATATTTAGTACCGGAAGTGTG---TTT--TGAAA------GCGT-TG---CT---AAAT-----G-C----------CTAT--GCGAAACCGTGATTTTGTTCTAGGTCATCT-TT----T--GCA-CA-G--ACATGT-A----GG-TCTAAATGCAGACAGT---CTTCACTCAGTGCACTGGGCAACGCT--CA-CGGGGGA--CACACCCAATACAAACAATTTA-CA---TGCAAACTTCTGGTTTTACATATTG--GAAgtgtactaacacaatgttatactg
gi|7 : AATTCAAAGC---T-AAAAGT--T--ATTTTT--GAAGAATTTGATTTGT-TAGTTTTAT----AA------------------------------------T----A--------TAACTGTGTTTTTGAAAGTTACGC----ATGTTCTTATAACCAGCACCATCA-GTTT-ACA-------TGTTAAACGT--TGTTAATGGGTGTGTCTC---GTGAGA--------G-TTGATAAATATCTGG--GCAAAA-----G----GAGC-AGA--AT-T-CTGCTCTCGGCT-CATG--GTTTGCAA----GG-TCTATGCGCAGACGAT---TC--AC----TACATTGAGCAATGAT--CA-AAGGGGA--CATGACCGATACTAA-ACTT-----------AAACTG
gi|8 : TTTTTTAAAGTTACAC----A------------TA----CAACA-GTTT-GTA-------TGTATAATTT--TG---------GTTTTGG---GT---GATCGCCGCG-C----------CTTT--GCACAA-----A--TTAAGGCGGA--AT-T-CT----T--GAA-CA-G--GCTTGCAA----GGTTTTATGTGACGACGAT---GT--CC----TGCCCTGAGCAAtgcgctgaacgtaaaactga
gi|8 : acatgacaAA-ATTTTA-CA---TGGAAACTGTTGGTGATGGTTATTG--AAACTGAACGA----T------T-ATGTCGCCTACAAAAAC-CAGA---C-GGTAT---TTTAAAACACTACTTTTGTGATAAAACTattttacatggaaactgttggtgatggttattgaaactgaacgattatgtcgcctacaaaaaccagacggtattttaaaacactacttttgtgataaaact
gi|9 : acatgacattttttaaagttacacatacaacagtttgtatgtataattttggttttgggtgatcgccgcgcctttgcacaaattaaggcggaattcttgaacaggcttgcaaggttttatgtgacgacgatgtcctgccctgagc---T---TTTCAAACACAACTCT--TGATAAAAC-AA--AAT-GATTTCTTCAAAAAT-----TCACACATTTATTATAGCTATCAGTTGTTCTTTCCTGCAGTACTAA--T-CATATA----------TAA-ATTCATT------TT-C-------AACGAGTTCAGATATACATTTTTTAAGATCACCAGACAATACTTGTGGCCTGCAGT--ATAT