lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111 1 1 1 33 1 333 1 33 11 111 111 111111 222222222222222222222222222 1111 66666666666666666666666666666666 33333333333 333 11111 1111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11 1 333333333333333333333333333 1111 1111 22222222 33333333333333 1 33 1 777 22 444 1
lowQualScore : 6 7 8 3 777 6 0 5 6 7 0 7 1 00 7 6 444 3 6 9 6 6 8 00 88 777 9 9 1 99 0 000 666666 77 111111111111111111111111111 2222 33333333333333333333333333333333 55555555555 4 777 00000 6 5 0000 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 0 55 1 333333333333333333333333333 2222 1 0 2222 1 0 5 1 66666666 6666 33333333333333 8 7 3 5 22 6 7 000 6 11 6 6 6 777 5
lowQualScore : . . . . ... . . . . . . . . .. . . ... . . . . . . .. .. ... . . . .. . ... ...... .. ........................... .... ................................ ........... . ... ..... . . .... ...................................................................................................... . .. . ........................... .... . . .... . . . . ........ .... .............. . . . . .. . . ... . .. . . . ... .
lowQualScore : 0 0 3 3 777 0 7 0 0 0 7 0 0 33 0 0 777 3 0 7 0 0 3 77 77 555 2 9 6 11 7 000 000000 99 111111111111111111111111111 1111 11111111111111111111111111111111 00000000000 0 444 22222 1 0 6666 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1 22 6 777777777777777777777777777 1111 1 9 1111 4 6 0 4 88888888 4444 22222222222222 3 7 7 7 55 0 0 000 0 00 0 0 0 000 0
consensus : TAATTATCATGATTATGGTAAGAGCATAGCAATT-AGTGTTAATAT-T-TAAATTACAATAACATAAACTTTCTATATTTTTCAGGACTGGATATGTTAAAAGCGACATTAAAATGCCCCGACAAAGACTTTTTTTGGGAAAAAGTCTTTACAGATGAGGATTTGGAAACTGTCAAAGAAAGATACCAAACCAATTT-AGCAGAGAAGCGAAGGGACTTGGATGAATCAAGTATGTTGGTGTCTTCTATTTTTGTTATTTTTAATGGTTTTCTGCCGATTGTTAACAACTTATTGATTCGCTGC---AGCTGTTATGATTTCTTTTATTATGCTATCCGAAGG---GCGAGCATATAGC-----CGCCGC--TTTGTC-------CAC----CCATC--------TGTG----TGA--------------------G---TCC----GTCCAAA-TTA-ATT---TCCGGAACGTAACTCCAAAAA---TNCTGAAGNG-AATCC----AGTGGCACT-----T--G-AACATGGATAGAGGGCA---CAATGTGTGGAAGTGCAGA---GT-AAANAA--ATCGNAACAAA---TATCTTGAAT----------ATAACGACAGAATTATCTCNCCTTNTG----TTNTTTTTT----T------TTT----TGCTTGT----CCCGATTATATCTTCATAAAAAT----GGNAACGAAT-C--AAATGTNAC-TGGAACAAGGATANAGGNCAGTGTGTGGTACNAGAGCAAAAGGTTCTCTGCTTGATAAATCATCATC---TATAATCGATCTCCCATAAAGAAAGTATCCTTGAATTAACATCTGAACACATTGGTCTCCTAAACATGTCCGAATCAATTAAACTTGGACAA
Reference ( gi|2 ) : TAATTATTATGATTATGGTAAGAGCATATCAAAT-AGTGTTAATAT-T-TAAATTACAATGACATGAAATTTTTATATTTTTCTGGACTGGATATGTTAAGAGCGACATTTAAATGCTCTGACAAAGACTTTTTAAGGGAAAAAGTCATTACAGATGAAGATTTGGAAACTGTCAAAGAAAGATACCAAACCTA-TT-AGTAGAGAAGTGAAGGGATTTGGATGAATCAAGTATGTTGATGTCTTCTATTTATGTTATTCATAATGGTTTTCTGCCGATTGTTAACAACTTATTGATTCGCTGC---AGCTGTTATGATTTCTTTTATCATGCTATCTGAAGG---GCAAACATATAGC-----CACTGC--TTTGTC-------CAC----CCATC--------TGTG----TGA--------------------G---TCA----ATCCAAA--TA-ATT---TCCGGAACTTTACTCCAAAAA---TCCTGAAAAG-AATCC----AGTGGCACT----AT--G-AACTTGGATAGATGGTACATTAATATGTGGAAGTGCAGA---AC-AAACAA--ATCGTAACAAA---TATCTTGAAT----------ATAATGACATAATTATTTCGCCTTATG----TTGTTTTTT----T------TTT----TACTTAT----CCCGATTATATCTTCATAATAAT----GGAAACGAAT-C--ACGTGTGAC-TGGAACATGGATATAGGGCATTGTGTGGTATATGAATAAAAGGTTCTCTGCTTGGTATATCATCATCTATTATAATCGACCTCCCATAAAGAAAGTGGCCTTGAATTAACATCTGAACACATCGGTCTCCTAAACATGTCCGAATCGATCAATC-TGGAAAA
gi|3 : TAATTGTCATGATTATGGTTAGAGCATATCAAAT-AGTGTTAATAT-T-TAAATTACAATAACATAAACTTTCTATATTTTTCAGGACTGGTTATGTTAGGAGCGACATTAAAATGTTCCGACAAAGACTTTTTTGGGGAAAAAGTCTTTACAGATGAGGATTTGGAAACTGTCAACGAAAGATACCAAACCAATTT-AGCCGAGAAACGAAACGACTTAGATGAATCAAGTATGTTGGTGTCATCTATTTATGTTATTTTTAATGTTTTTTTGTCGATTGTTAACAACTTATTAATTCGCTGC---AGCTGTTCTGATTTCTTTTATTATGTTATCTGAAGG---GCAAACATATAGT-----CACTGC--TTTGTC-------CAC----CCTTC--------TTTG----TGA--------------------G---TCC----GTCCAAATTTA-ATT---TCCGGAACAT--CTTCAAAAA---TCCTGAAAGA-AATCC----AGTTG------------N-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NN-NNNNNN--NNNNNNNNAAA---TATCT----T----------ATAACG--ATAATTATTTCGCCTTATG----T--TTGTTA----T------TTT----TACTTAT----GCCGATTATATTTTCATGAAATT----AGCAACGAAT-C--CAGTGTTAC-T
gi|1 : AATTATCATGATTATGGTAAGAGCATAGCAATTTAGTGTTAATATATATAAATTTCAATAACATAAACTTTCTATATTTTTCAGGACTGGATATGTTAAAAGCGACATTAAAATGCCCTGACAAAGACTTTTTTTTGGAAAAAGTTTTTACAGATGAGGATTTGGAAACTGTCAAAGAAAGATACCAAACCAA-TTTAGCAGAGAAGCTAAGGGACTTGGATGAATCAAGTATGTTGGTGTCTTCTATTTTTGTTATTT-TAATGGTTTTCTGC-GATTGTTAACAACTTATTGATTCGCTGC---AGCTGTTATGATTTCTTTTATTATGCTATCTGAAGG---GCAAACATATAGC-----CACTGC--TTTCTC-------CAC----CCATC--------TGTG----TGA--------------------G---TCC----ATCCTAACTTA-ATT---TCCGGAAC--AACTTCAAAAA---GCCTGAAAGG-AATCC----AGTGG------------N-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NN-NNNNNN--NNNNNNNNAAA---TATCTT--AT----------ATAACGAC--AATTATTTCACCTTGTG----TTG--GTTA----T------TTT----TACTTAT----CCCAATTATATCTTCATAAAAAT----CGAAACGAAT-C--CAATGTTGC-TGGAACATGGATAAAGGGCAATGTGTGGTATTAGAATAAAAGGTTCTCTGCTTGATAAATCATCATC---TATAATCGATCTCCCATAAAGAAAGTATCCTTGAATTAACATCTGAACACATTGGTCTCCTAAACATGTCCGAATCAATTAAACTTGGACAA
gi|4 : AATTATCATGATTATGGTAAGAGCATAGCAATT-AGTGTTAATAT-T-TAAATTACAATAACATGAACTTTCTATGATTTTCAGGACTGGATATGTTAAAAGCGACATTAAAATGCCCTGACAAAGACTTTTTTTGGGAAAAAGTCTTTACAGATGAGGATTTGGCAACTGTCAAAGAAAGATACCAAACCAATTT-AGCAGAGAAGAGAAGGGACTTGGATGAATCAAGTATGTTGGTGTCTTCTATTTTTGTTATTTTTAATGGTTTTCTG-CAATTGTTAACAACTTATTGATTCGCTGC---AGCTGTTATGATTTCTTTTATTATGCTATCTGAAGG---GCAAACATATAGC-----CACTGC--TTTCTC-------CAC----CCATC--------TGTG----TGA--------------------G---TCC----ATCCAAACTTA-ATT---TCCGGAAC--AACTTCAAAAA---GCCTGAAATG-AATCC----AGTGG---------N--N-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NN-NNNNNN--NNNNNNNNAAA---TATCTTG--T----------ATAACGAC--AATTATTTCACCTTGTG----atcacctttagaaaatgaaaaataactccgtgtt
gi|8 : GATTTACTGCTTTAGCTTTT----CTTTTTTTGTTGTGCTGGGTGAAGG---CTGAGGATATAAC-----TGCCGG--TCTGTC-------CACTCTTCCATCCGTCCGTTTGTG----TGGGCGTATGTGTCCGTCCGTGTG---TCAATCTATCCAAA--TT-TTTG--TCC-GAGCGTAACCCTAAAAG---TACTAAAGTG-ACTCT----AATGACACT----TA--G-AAC----ATAGAGGG-----CAACATGTGGAAGT--AGATATAT-AAAGAACCATCATA
gi|5 : atttattttatacaCTTTTAT---GCTCCCCTAAAG---ACGAGTATACAGCTGACCCACCAC--TTTGTCAGTGTTACAT-------TC--------TGTG----TAT--------------------GCTATCC----ATACAAA--TACATG---TCCAGAATATAACTCCCAAAAGTGTTC----AAGCAATAC----AGTG-CACT-----T--GCAGCATGTATAAAGGGTA-----GTGTTTGCAAGTGCA---------AACA----TTCTAAC-----------TGGA-----------ATAAAGGCAGAGTTATCTTACCTT-------TTGTACTTTA---T------TTT----TGCTTGT----CTGGATAATATCTT--TGA-AATTCCCGGG---GAATCC--ACATG-GGT-TTGAACAAAGATAGAAATCAGTGTGTc
gi|6 : TTTTTTCAAGCT--CC-AAGGAATGCAAGCATATAGC--------TGTCATTTGTT-------TGT----GAGTT--------TGTGCACATGC--------------------T---TCC----TTCCAAA--TTTGTT---TCCAGAGCATTACTTCAGATA---TACTGAAGCG-AATTC----AGTAACATT-----T-----ACATGGATTGA-GGC----TAATGCTCGGAAGTACAGA---GC-AAAAAA--A--AAAACAAGAC-TGCCTTGAAT----------A--ATGACAGAATTGTGTCCACTCTTT----TTTTTTTTT----T------TTT----CTTTTAT----a
gi|7 : TCTTATAAGGCTCCCCGATGG---TCTAACATAAAGT-----TGTTGT--TTTGTC-------CTT----CCATT--------TGTT----CAACT------------------G---TCT----GTCCAAA--T---TCCCATCCAAAATGTAGCTCCAAAAG---TGCTGAAGGG-AATTCATTTAATGACACTTAAAATTCA-AACATGGATGGA-GGC-C----ATGTGTGGAAATGCGGA---GT-GAA-AA--A--GAAACA---------TT-AAT-----------TAATGATAGAAACATCTACCCTTTTGTACTTTATTTTTTATTAT------TTT----TGCTTGT----Catttgattgtcctgagtat
gi|14 : tCTCTAAAAG---TACTGAACAG-AATTC----AGCGACACT----TG--G-AACATGGGTAAAGGGTA-----ATATGTGGAAGtgg
gi|9 : AGTGCAGA---ATGAAAAAA--A----AACACACTCTGTCTTCAACTCCATCTTCAATAATGACAGAATTGTTTC-CCTCCT---------CTTTT----TAGGTAGTTT----TGC--------CCTGAGCATATCTTAAAAAATAT----GGCAATGAAT-CCAACCTG-AAT-TGGAACAAGAATATAGGACCGTGTTTGGTACA-GAGCAAAA
gi|12 : gcCTTGAAT----------AT--TGACAGAATTACCTCCCATTTTT----TTTTTTTTT----T------TTTATTATATTTGTTTGCCCTGAGTTTACCTTCAAAAGTAT----GAAAGAGAATGC--AAA-GTGACATGGAaa
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): TCTATCTTGAATAACGACATAATTGCCTCCCCTTTTTTCAATTTTTCCCCAAATTATATTTGCTTGTCGTGAGTATATCTTCAAAAGTTTGAAAGGCAATTGATCTACAAAATGTTTACAATGTACCAGTACCATAACT
Unaligned ( gi|11 ): CTCAAAATTACTGCATGGAATCCAATGACAATTGAAACATGCAGTGTGAAGAACAATAACACTTGTTACATAATGTTGAGGTATCATCTCCCCCAATAAATACTTTATTTGTGGTTATTTTTGCTTGCCTGGAG
Unaligned ( gi|13 ): TTTTATGCTCCCCGACAGGCATGTATCTGCCACTTTGCCAGTCCGTCCGTGCATTGTCTGTCTATGCATCTGTCAAAAACCTTGTTCGGAACACAGTTCCAAAAGT
Unaligned ( gi|15 ): AATTTAATGACACTTGAGGGCATTTTGTGAAAGTGCACAGAGAAAAAAATCAC
Unaligned ( gi|16 ): ATCTGTAACCCTTTTGTCTGAAGCATAACTACAAAACTATCCA
Alignments
lowQualScore : 1 111 1 111 11111 1111111 11111111 3333333333333333333 22222222222222222222222222222222222 111 222222222 333333 11111 11111 22222222222222 111 55555555555555555555555 11111111111 11111111111 11 333 1
lowQualScore : 2 4 0 111 2 3 3 0 4 3 9 444 5 77 7777 3 11111 0 4444444 9999 66666666 0000000000000000000 88888888888888888888888888888888888 4 777 111 4 0 1 22 8888 5 4 888888888 1 2 222222 1 1 99999 1 99999 55555 55555555555555 0 88 0 666 2 8888 000 88888888888888888888888 1 3 0 5 55555555555 1 1 55555555555 66 6 4 1 1 0 44 11 4 555 3 4 5 2
lowQualScore : . . . ... . . . . . . . ... . .. .... . ..... . ....... .... ........ ................... ................................... . ... ... . . . .. .... . . ......... . . ...... . . ..... . ..... ..... .............. . .. . ... . .... ... ....................... . . . . ........... . . ........... .. . . . . . .. .. . ... . . . .
lowQualScore : 5 0 0 000 0 5 2 2 0 2 0 000 6 44 9999 4 11111 1 4444444 4444 11111111 0000000000000000000 11111111111111111111111111111111111 4 888 222 0 2 0 44 5555 0 0 999999999 5 0 111111 0 4 99999 0 88888 99999 22222222222222 5 22 5 555 4 5555 000 77777777777777777777777 1 0 7 4 99999999999 0 7 99999999999 00 7 0 0 0 2 77 33 0 000 0 0 5 5
consensus : TAATTATCATGATTATGGTAAGAGCATANCAANT-AGTGTTAATAT-T-TAAATTACAATAACATGAACTTTCTATATTTTTCAGGACTGGATATGTTAAGAGCGACATTAAAATGCCCTGACAAAGACTTTTTTNGGGAAAAAGTCTTTACAGATGAGGATTTGGAAACTGTCAAAGAAAGATACCAAACCAATTTAGCAGAGAAGCGAAGGGACTTGGATGAATCAAGTATGTTGGTGTCTTCTATTTNTGTTATTTTTAATGGTTTTCTGCCGATTGTTAACAACTTATTGATTCGCTGC---AGCTGTTATGATTTCTTTTATTATGCTNCCCGAAGG---GCGAGCATATAGCCG-----CCGCTTTGTC-------CGC----CCGTC--------TGTG----TGA--------G---TCCGTC-----------C-A------AA-TT------AA--TT-TCCG---GAACGTAACT-CCAAAAGTNCTGAAGNGAATCC----AGTGGCACT-T-------G-AACATGGATAGAGGG--C---AATGTGTGGAAGTGCAGA---ACGAANAAATCGNAACAAA---TATCTTGAAT----------ATAACGACAGAATTATCTC--NCCTTNTG----TTNTTTTTT-------T------T--------TTTGCTTGTCCCGANTATATCTTCATAAA-----AAT---GGNAACGAAT-C----AAA--TGTGAC-TGGAACANGGATANAGGGCAGTGTGTGGTAT-AGAATAAAAGGTTCTCTGCTTGGTANATCATCATCTATTATAATCGACCTCCCATAAAGAAAGTGNCCTTGAATTAACATCTGAACACATCGGTCTCCTAAACATGTCCGAATCGATCAANCTTGGANAA
Reference ( family-5589 ) : TAATTATCATGATTATGGTAAGAGCATAGCAATT-AGTGTTAATAT-T-TAAATTACAATAACATAAACTTTCTATATTTTTCAGGACTGGATATGTTAAAAGCGACATTAAAATGCCCCGACAAAGACTTTTTTTGGGAAAAAGTCTTTACAGATGAGGATTTGGAAACTGTCAAAGAAAGATACCAAACCAATTTAGCAGAGAAGCGAAGGGACTTGGATGAATCAAGTATGTTGGTGTCTTCTATTTTTGTTATTTTTAATGGTTTTCTGCCGATTGTTAACAACTTATTGATTCGCTGC---AGCTGTTATGATTTCTTTTATTATGCTATCCGAAGG---GCGAGCATATAGCCG-----CCGCTTTGTC-------CAC----CCATC--------TGTG----TGA--------G---TCCGTC-----------C-A------AA-TT------AA--TT-TCCG---GAACGTAACT-CCAAAAATNCTGAAGNGAATCC----AGTGGCACT-T-------G-AACATGGATAGAGGGCAC---AATGTGTGGAAGTGCAGA---GTAAANAAATCGNAACAAA---TATCTTGAAT----------ATAACGACAGAATTATCTC--NCCTTNTG----TTNTTTTTT-------T------T--------TTTGCTTGTCCCGATTATATCTTCATAAA-----AAT---GGNAACGAAT-C----AAA--TGTNAC-TGGAACAAGGATANAGGNCAGTGTGTGGTACNAGAGCAAAAGGTTCTCTGCTTGATAAATCATCATC---TATAATCGATCTCCCATAAAGAAAGTATCCTTGAATTAACATCTGAACACATTGGTCTCCTAAACATGTCCGAATCAATTAAACTTGGACAA
gi|1 : AATTATCATGATTATGGTAAGAGCATAGCAATTTAGTGTTAATATATATAAATTTCAATAACATAAACTTTCTATATTTTTCAGGACTGGATATGTTAAAAGCGACATTAAAATGCCCTGACAAAGACTTTTTTTTGGAAAAAGTTTTTACAGATGAGGATTTGGAAACTGTCAAAGAAAGATACCAAACCAATTTAGCAGAGAAGCTAAGGGACTTGGATGAATCAAGTATGTTGGTGTCTTCTATTTTTGTTA-TTTTAATGGTTTTCTG-CGATTGTTAACAACTTATTGATTCGCTGC---AGCTGTTATGATTTCTTTTATTATGCTATCTGAAGG---GCAAACATATAGCCA-----CTGCTTTCTC-------CAC----CCATC--------TGTG----TGA--------G---TCCATC-----------CTA------AC-TT------AA--TT-TCCG---GAAC--AACT-TCAAAAAGCCTGAAAGGAATCC----AGTGG--NN-N-------N-NNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNAAA---TATCTT--AT----------ATAACGAC--AATTATTTC--ACCTTGTG----TTG--GTTA-------T------T--------TTTACTTATCCCAATTATATCTTCATAAA-----AAT---CGAAACGAAT-C----CAA--TGTTGC-TGGAACATGGATAAAGGGCAATGTGTGGTATTAGAATAAAAGGTTCTCTGCTTGATAAATCATCATC---TATAATCGATCTCCCATAAAGAAAGTATCCTTGAATTAACATCTGAACACATTGGTCTCCTAAACATGTCCGAATCAATTAAACTTGGACAA
gi|10 : ---TATCTTGAAT----------A--ACGACATAATTGCCTC--CCCTTTTT----TCAATTTTTCCCCAAAT------TATA-----TTTGCTTGTCGTGAGTATATCTTCA-AAAGTTTGAAA---GGCAATTGAT-CTACAAAA--TGTatcacctttagaaaatgaaaaataactccgtgtt
gi|11 : tcCAAAATTACTGCATGGAATCC----AATGACAAT-T-------GAAACATGttacaatgtaccagtaccataact
gi|12 : ctCTTGAAT----------AT--TGACAGAATTACCTC--CCATTTTT----TTTTTTTTT-------T------TTTATTATATTTGTTTGCCCTGAGTTTACCTTCAAAAG-----TAT---GAAAGAGAATGC----AAA---GTGACATGGAcagtgtgaagaacaataacacttgttacataatgttgaggtatcatctcccccaataaatactttatttgtggttatttttgcttgcctggag
gi|13 : TTATGCTCCCCGA-------CAGGCATGTATCTG-----CCACTTTGCC-------AGT----CCGTC--------CGTG----C-ATT------G---TCTGTCTATGCATCTGTC-A------AA---------AACCTTGTTCG---GAACACAGTT-CCAAAAGT
gi|14 : ttCT-CTAAAAGTACTGAACAGAATTC----AGCGACACT-T-------GGAACATGGGTAAAGGG--T---AATATGTGGAAG
gi|2 : TAATTATTATGATTATGGTAAGAGCATATCAAAT-AGTGTTAATAT-T-TAAATTACAATGACATGAAATTTTTATATTTTTCTGGACTGGATATGTTAAGAGCGACATTTAAATGCTCTGACAAAGACTTTTTAAGGGAAAAAGTCATTACAGATGAAGATTTGGAAACTGTCAAAGAAAGATACCAAACCTATT-AGTAGAGAAGTGAAGGGATTTGGATGAATCAAGTATGTTGATGTCTTCTATTTATGTTATTCATAATGGTTTTCTGCCGATTGTTAACAACTTATTGATTCGCTGC---AGCTGTTATGATTTCTTTTATCATGCTATCTGAAGG---GCAAACATATAGCCA-----CTGCTTTGTC-------CAC----CCATC--------TGTG----TGA--------G---TCAATC-----------C-A------AA--T------AA--TT-TCCG---GAACTTTACT-CCAAAAATCCTGAAAAGAATCC----AGTGGCACTAT-------G-AACTTGGATAGATGGTACATTAATATGTGGAAGTGCAGA---ACAAACAAATCGTAACAAA---TATCTTGAAT----------ATAATGACATAATTATTTC--GCCTTATG----TTGTTTTTT-------T------T--------TTTACTTATCCCGATTATATCTTCATAAT-----AAT---GGAAACGAAT-C----ACG--TGTGAC-TGGAACATGGATATAGGGCATTGTGTGGTATATGAATAAAAGGTTCTCTGCTTGGTATATCATCATCTATTATAATCGACCTCCCATAAAGAAAGTGGCCTTGAATTAACATCTGAACACATCGGTCTCCTAAACATGTCCGAATCGATCAATC-TGGAAAA
gi|3 : TAATTGTCATGATTATGGTTAGAGCATATCAAAT-AGTGTTAATAT-T-TAAATTACAATAACATAAACTTTCTATATTTTTCAGGACTGGTTATGTTAGGAGCGACATTAAAATGTTCCGACAAAGACTTTTTTGGGGAAAAAGTCTTTACAGATGAGGATTTGGAAACTGTCAACGAAAGATACCAAACCAATTTAGCCGAGAAACGAAACGACTTAGATGAATCAAGTATGTTGGTGTCATCTATTTATGTTATTTTTAATGTTTTTTTGTCGATTGTTAACAACTTATTAATTCGCTGC---AGCTGTTCTGATTTCTTTTATTATGTTATCTGAAGG---GCAAACATATAGTCA-----CTGCTTTGTC-------CAC----CCTTC--------TTTG----TGA--------G---TCCGTC-----------C-A------AATTT------AA--TT-TCCG---GAACAT--CT-TCAAAAATCCTGAAAGAAATCC----AGTTG--NN-N-------N-NNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNAAA---TATCT----T----------ATAACGAT--AATTATTTC--GCCTTATG----T--TTGTTA-------T------T--------TTTACTTATGCCGATTATATTTTCATGAA-----ATT---AGCAACGAAT-C----CAG--TGTTAC-T
gi|4 : AATTATCATGATTATGGTAAGAGCATAGCAATT-AGTGTTAATAT-T-TAAATTACAATAACATGAACTTTCTATGATTTTCAGGACTGGATATGTTAAAAGCGACATTAAAATGCCCTGACAAAGACTTTTTTTGGGAAAAAGTCTTTACAGATGAGGATTTGGCAACTGTCAAAGAAAGATACCAAACCAATTTAGCAGAGAAGAGAAGGGACTTGGATGAATCAAGTATGTTGGTGTCTTCTATTTTTGTTATTTTTAATGGTTTTCTG-CAATTGTTAACAACTTATTGATTCGCTGC---AGCTGTTATGATTTCTTTTATTATGCTATCTGAAGG---GCAAACATATAGCCA-----CTGCTTTCTC-------CAC----CCATC--------TGTG----TGA--------G---TCCATC-----------C-A------AACTT------AA--TT-TCCG---GAAC--AACT-TCAAAAAGCCTGAAATGAATCC----AGTGG-NNN-N-------N-NNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNAAA---TATCTTG--T----------ATAACGAC--AATTATTTC--ACCTTGTG----
gi|5 : TTATGCTCCCCTAAAG---ACGAGTATACAGCTGACCCACCACTTTGTCAGTGTTACAT-------TC--------TGTG----TAT--------GCTATCCATA-----------C-A------AA-TA------CA--TG-TCCA---GAATATAACTCCCAAAAGTGTTCAAGC-AATAC----AGT-GCACT-T-------GCAGCATGTATAAAGGG--T---AGTGTTTGCAAGTGC--------AAAC--ATTCTAAC-----------TGGA-----------ATAAAGGCAGAGTTATCTT--ACCTTTTG----TAC--TTTA-------T------T--------TTTGCTTGTCTGGATAATATCTT--TGAA-----ATTCCCGGG---GAATCC----ACA--TG-GGT-TTGAACAAAGATAGAAATCAGTGTGT
gi|6 : cttTTTTTTCAAGCT--CC-AAGGAATGCAAGCATATAGCTG-----TCA-TTTGTT-------TGT----GAGTT--------TGTGCACATGC--------T---TCCTTC-----------C-A------AA-TT------TG--TT-TCCA---GAGCATTACT-TCAGATATACTGAAGCGAATTC----AGTAACATT-T----------ACATGGATTGA-GGC-T---AATGCTCGGAAGTACAGA---GCAAAAAAA--AAAACAAGAC-TGCCTTGA------------ATAATGACAGAATTGTGTCCACTCTTTTT----TTTTTTTTT-------T------TCTTTTATATTTGATTGTCCTGAGTATa
gi|7 : TCTTATAAGGCTCCCCGATGG---TCTAACATAAAGTTG-----TTGTTTTGTC-------CTT----CCATT--------TGTT----CAACT------G---TCTGTC-----------C-A------AA-TT------CC--CA-TCCA---AAATGTAGCT-CCAAAAGTGCTGAAGGGAATTCATTTAATGACACT-TAAAATTCA-AACATGGATGGAGG---C---CATGTGTGGAAATGCGGA---GTGAAAAA---GAAACA---------TT-AAT-----------TAATGATAGAAACATCTA--CCCTTTTGTACTTTATTTTTTATTA---T------T--------TTTGCTTGTC
gi|8 : tGATTTACTGCTTTAGCTTTT----CTTTTTTTGTTGTGCTGGGTGAAGG---CTGAGGATATAACTG-----CCGGTCTGTC-------CACTCTTCCATCCGTCCGTTTGTG----TGGGCGTATGTG---TCCGTC-----------C-GTGTGTCAA-TCTATCCAAA--TT-TTTGTCCGAGCGTAACC-CTAAAAGTACTAAAGTGACTCT----AATGACACT-TA------G-AAC----ATAGAGGG--C---AACATGTGGAAGT--AGATATATAAAGAAtgg
gi|9 : atttattttatacaAGTGCAGA---ATGAAAAAA---AAACACACTCTGTCTTCAACTCCATCTTCAATAATGACAGAATTGTTTC--CC----------TCCTCTTTT-------TAGGTAGT--------TTTGC----CCTGAGCATATCTTAAAAAA-----TAT---GGCAATGAAT-C----CAACCTG-AAT-TGGAACAAGAATATAGGACCGTGTTTGGTAC-AGAGCAAAAccatcatac
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AATTTAATGACACTTGAGGGCATTTTGTGAAAGTGCACAGAGAAAAAAATCAC
Unaligned ( gi|16 ): ATCTGTAACCCTTTTGTCTGAAGCATAACTACAAAACTATCCA
Alignments
lowQualScore : 1 111 1 111 11111 333333333333 333333333333333333 22222222222222222222222222222222222 111 222222222 111111 11111 11111 22222222222222 111 55555555555555555555555 11111111111 1111111 1111 222 1
lowQualScore : 1 1 0 111 1 3 0 1 3 9 444 5 1 1 7777 3 11111 0 1 222222222222 2 000000000000000000 88888888888888888888888888888888888 4 777 111 4 1 22 8888 4 4 888888888 1 2 111111 0 4 2 99999 55555 55555555555555 0 88 0 666 2 8888 000 88888888888888888888888 1 1 0 5 55555555555 1 1 4444444 0 6 6 1 1 0 0 3333 1 111 1 1 5 1
lowQualScore : . . . ... . . . . . . ... . . . .... . ..... . . ............ . .................. ................................... . ... ... . . .. .... . . ......... . . ...... . . . ..... ..... .............. . .. . ... . .... ... ....................... . . . . ........... . . ....... . . . . . . . .... . ... . . . .
lowQualScore : 0 0 0 000 0 2 2 0 2 0 000 6 0 7 9999 4 11111 1 7 222222222222 7 000000000000000000 11111111111111111111111111111111111 4 888 222 0 0 44 5555 0 0 999999999 5 0 999999 4 4 8 88888 99999 22222222222222 5 22 5 555 4 5555 000 77777777777777777777777 1 0 7 4 99999999999 0 7 9999999 1 7 7 0 0 2 2 7777 0 555 0 0 5 0
consensus : TAATTATCATGATTATGGTAAGAGCATANCAANT-AGTGTTAATAT-T-TAAATTACAATAACATGAACTTTCTATATTTTTCAGGACTGGATATGTTAAGAGCGACATTAAAATGCCCTGACAAAGACTTTTTTNGGGAAAAAGTCTTTACAGATGAGGATTTGGAAACTGTCAAAGAAAGATACCAAACCAATTTAGCAGAGAAGCGAAGGGACTTGGATGAATCAAGTATGTTGGTGTCTTCTATTTNTGTTATTTTTAATGGTTTTCTGCCGATTGTTAACAACTTATTGATTCGCTGC---AGCTGTTATGATTTCTTTTATTATGCTNCCCGAAGG---GCGAGCATATAGCCG-----CCGCTTTGTCCGC------------CCGTCTGTG----TGA--G--------TCCGTC-----------C-A------AA-TT------AA--TT-TCCG---GAACGTAACT-CCAAAAGTNCTGAAGNGAATCC----AGTGG-CACT-T-------G-AACATGGATAGAGGG-----TAATGTGTGGAAGTGCAGAACGAAAAAATCGNAACAAA---TATCTTGAAT----------ATAACGACAGAATTATCTC--NCCTTNTG----TTNTTTTTT-------T------T--------TTTGCTTGTCCCGANTATATCTTCATAAA-----AAT---GGNAACGAAT-C----AAATGTG-AC-TGGAACANGGATANAGGGCAGTGTGTGGTA-TA-GAATAAAAGGTTCTCTGCTTGGTANATCATCATCTATTATAATCGACCTCCCATAAAGAAAGTGNCCTTGAATTAACATCTGAACACATCGGTCTCCTAAACATGTCCGAATCGATCAANCTTGGANAA
Reference ( family-5589 ) : TAATTATCATGATTATGGTAAGAGCATANCAANT-AGTGTTAATAT-T-TAAATTACAATAACATGAACTTTCTATATTTTTCAGGACTGGATATGTTAAGAGCGACATTAAAATGCCCTGACAAAGACTTTTTTNGGGAAAAAGTCTTTACAGATGAGGATTTGGAAACTGTCAAAGAAAGATACCAAACCAATTTAGCAGAGAAGCGAAGGGACTTGGATGAATCAAGTATGTTGGTGTCTTCTATTTNTGTTATTTTTAATGGTTTTCTGCCGATTGTTAACAACTTATTGATTCGCTGC---AGCTGTTATGATTTCTTTTATTATGCTNCCCGAAGG---GCGAGCATATAGCCG-----CCGCTTTGTCCGC------------CCGTCTGTG----TGA--G--------TCCGTC-----------C-A------AA-TT------AA--TT-TCCG---GAACGTAACT-CCAAAAGTNCTGAAGNGAATCC----AGTGG-CACT-T-------G-AACATGGATAGAGGG-----CAATGTGTGGAAGTGCAGAACGAANAAATCGNAACAAA---TATCTTGAAT----------ATAACGACAGAATTATCTC--NCCTTNTG----TTNTTTTTT-------T------T--------TTTGCTTGTCCCGANTATATCTTCATAAA-----AAT---GGNAACGAAT-C----AAATGTG-AC-TGGAACANGGATANAGGGCAGTGTGTGGTA-TA-GAATAAAAGGTTCTCTGCTTGGTANATCATCATCTATTATAATCGACCTCCCATAAAGAAAGTGNCCTTGAATTAACATCTGAACACATCGGTCTCCTAAACATGTCCGAATCGATCAANCTTGGANAA
gi|1 : AATTATCATGATTATGGTAAGAGCATAGCAATTTAGTGTTAATATATATAAATTTCAATAACATAAACTTTCTATATTTTTCAGGACTGGATATGTTAAAAGCGACATTAAAATGCCCTGACAAAGACTTTTTTTTGGAAAAAGTTTTTACAGATGAGGATTTGGAAACTGTCAAAGAAAGATACCAAACCAATTTAGCAGAGAAGCTAAGGGACTTGGATGAATCAAGTATGTTGGTGTCTTCTATTTTTGTTA-TTTTAATGGTTTTCTG-CGATTGTTAACAACTTATTGATTCGCTGC---AGCTGTTATGATTTCTTTTATTATGCTATCTGAAGG---GCAAACATATAGCCA-----CTGCTTTCTCCAC------------CCATCTGTG----TGA--G--------TCCATC-----------CTA------AC-TT------AA--TT-TCCG---GAAC--AACT-TCAAAAAGCCTGAAAGGAATCC----AGTGG-NNNN-N-------N-NNNNNNNNNNNNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAA---TATCTT--AT----------ATAACGAC--AATTATTTC--ACCTTGTG----TTG--GTTA-------T------T--------TTTACTTATCCCAATTATATCTTCATAAA-----AAT---CGAAACGAAT-C----CAATGTT-GC-TGGAACATGGATAAAGGGCAATGTGTGGTATTA-GAATAAAAGGTTCTCTGCTTGATAAATCATCATC---TATAATCGATCTCCCATAAAGAAAGTATCCTTGAATTAACATCTGAACACATTGGTCTCCTAAACATGTCCGAATCAATTAAACTTGGACAA
gi|10 : ---TATCTTGAAT----------A--ACGACATAATTGCCTC--CCCTTTTT----TCAATTTTTCCCCAAAT------TATA-----TTTGCTTGTCGTGAGTATATCTTCA-AAAGTTTGAAA---GGCAATTGAT-CTACAAAATGTatcacctttagaaaatgaaaaataactccgtgtt
gi|11 : tcCAAAATTACTGCATGGAATCC----AATGA-CAAT-T-------GAAACATGttacaatgtaccagtaccataact
gi|12 : ctCTTGAAT----------AT--TGACAGAATTACCTC--CCATTTTT----TTTTTTTTT-------T------TTTATTATATTTGTTTGCCCTGAGTTTACCTTCAAAAG-----TAT---GAAAGAGAATGC----AAA-GTG-ACATGGAcagtgtgaagaacaataacacttgttacataatgttgaggtatcatctcccccaataaatactttatttgtggttatttttgcttgcctggag
gi|13 : TTATGCTCCCCGA-------CAGGCATGTATCTG-----CCACTTTGCCAGT------------CCGTCCGTG----C-ATTG--------TCTGTCTATGCATCTGTC-A------AA---------AACCTTGTTCG---GAACACAGTT-CCAAAAGT
gi|14 : ttCT-CTAAAAGTACTGAACAGAATTC----AGCGA-CACT-TG------G-AACATGGGTAAAGGG-----TAATATGTGGAAG
gi|2 : TAATTATTATGATTATGGTAAGAGCATATCAAAT-AGTGTTAATAT-T-TAAATTACAATGACATGAAATTTTTATATTTTTCTGGACTGGATATGTTAAGAGCGACATTTAAATGCTCTGACAAAGACTTTTTAAGGGAAAAAGTCATTACAGATGAAGATTTGGAAACTGTCAAAGAAAGATACCAAACCTATT-AGTAGAGAAGTGAAGGGATTTGGATGAATCAAGTATGTTGATGTCTTCTATTTATGTTATTCATAATGGTTTTCTGCCGATTGTTAACAACTTATTGATTCGCTGC---AGCTGTTATGATTTCTTTTATCATGCTATCTGAAGG---GCAAACATATAGCCA-----CTGCTTTGTCCAC------------CCATCTGTG----TGA--G--------TCAATC-----------C-A------AA--T------AA--TT-TCCG---GAACTTTACT-CCAAAAATCCTGAAAAGAATCC----AGTGG-CACTAT-------G-AACTTGGATAGATGGTACATTAATATGTGGAAGTGCAGAACAAACAAATCGTAACAAA---TATCTTGAAT----------ATAATGACATAATTATTTC--GCCTTATG----TTGTTTTTT-------T------T--------TTTACTTATCCCGATTATATCTTCATAAT-----AAT---GGAAACGAAT-C----ACGTGTG-AC-TGGAACATGGATATAGGGCATTGTGTGGTA-TATGAATAAAAGGTTCTCTGCTTGGTATATCATCATCTATTATAATCGACCTCCCATAAAGAAAGTGGCCTTGAATTAACATCTGAACACATCGGTCTCCTAAACATGTCCGAATCGATCAATC-TGGAAAA
gi|3 : TAATTGTCATGATTATGGTTAGAGCATATCAAAT-AGTGTTAATAT-T-TAAATTACAATAACATAAACTTTCTATATTTTTCAGGACTGGTTATGTTAGGAGCGACATTAAAATGTTCCGACAAAGACTTTTTTGGGGAAAAAGTCTTTACAGATGAGGATTTGGAAACTGTCAACGAAAGATACCAAACCAATTTAGCCGAGAAACGAAACGACTTAGATGAATCAAGTATGTTGGTGTCATCTATTTATGTTATTTTTAATGTTTTTTTGTCGATTGTTAACAACTTATTAATTCGCTGC---AGCTGTTCTGATTTCTTTTATTATGTTATCTGAAGG---GCAAACATATAGTCA-----CTGCTTTGTCCAC------------CCTTCTTTG----TGA--G--------TCCGTC-----------C-A------AATTT------AA--TT-TCCG---GAACAT--CT-TCAAAAATCCTGAAAGAAATCC----AGTTG-NNNN-N-------N-NNNNNNNNNNNNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAA---TATCT----T----------ATAACGAT--AATTATTTC--GCCTTATG----T--TTGTTA-------T------T--------TTTACTTATGCCGATTATATTTTCATGAA-----ATT---AGCAACGAAT-C----CAGTGTT-AC-T
gi|4 : AATTATCATGATTATGGTAAGAGCATAGCAATT-AGTGTTAATAT-T-TAAATTACAATAACATGAACTTTCTATGATTTTCAGGACTGGATATGTTAAAAGCGACATTAAAATGCCCTGACAAAGACTTTTTTTGGGAAAAAGTCTTTACAGATGAGGATTTGGCAACTGTCAAAGAAAGATACCAAACCAATTTAGCAGAGAAGAGAAGGGACTTGGATGAATCAAGTATGTTGGTGTCTTCTATTTTTGTTATTTTTAATGGTTTTCTG-CAATTGTTAACAACTTATTGATTCGCTGC---AGCTGTTATGATTTCTTTTATTATGCTATCTGAAGG---GCAAACATATAGCCA-----CTGCTTTCTCCAC------------CCATCTGTG----TGA--G--------TCCATC-----------C-A------AACTT------AA--TT-TCCG---GAAC--AACT-TCAAAAAGCCTGAAATGAATCC----AGTGGNNNNN-N-------N-NNNNNNNNNNNNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAA---TATCTTG--T----------ATAACGAC--AATTATTTC--ACCTTGTG----
gi|5 : TTATGCTCCCCTAAAG---ACGAGTATACAGCTGACCCACCACTTTGTCAGTGTTA--------CATTCTGTG----TAT--GCTA-----TCCATA-----------C-A------AA-TA------CA--TG-TCCA---GAATATAACTCCCAAAAGTGTTCAAGC-AATAC----AGT-G-CACT-T-------GCAGCATGTATAAAGGG-----TAGTGTTTGCAAGTGCA-AAC------ATTCTAAC-----------TGGA-----------ATAAAGGCAGAGTTATCTT--ACCTTTTG----TAC--TTTA-------T------T--------TTTGCTTGTCTGGATAATATCTT--TGAA-----ATTCCCGGG---GAATCC----ACATG-G-GT-TTGAACAAAGATAGAAATCAGTGTGT
gi|6 : cttTTTTTTCAAGCTCC---AAGGAATGCAAGCATATAGCTG-----TCA-TTTGTTTGT------------GAGTTTGTGCACATGC--T--------TCCTTC-----------C-A------AA-TT------TG--TT-TCCA---GAGCATTACT-TCAGATATACTGAAGCGAATTC----AGTAA-CATT-T----------ACATGGATTGAGGC-----TAATGCTCGGAAGTACAGAGCAAAAAAA--AAAACAAGAC-TGCCTTGA------------ATAATGACAGAATTGTGTCCACTCTTTTT----TTTTTTTTT-------T------TCTTTTATATTTGATTGTCCTGAGTATa
gi|7 : TCTTATAAGGCTCCCCGATGG---TCTAACATAAAGTTG-----TTGTTTTGTCCTT------------CCATTTGTT----CAACTG--------TCTGTC-----------C-A------AA-TT------CC--CA-TCCA---AAATGTAGCT-CCAAAAGTGCTGAAGGGAATTCATTTAATGA-CACT-TAAAATTCA-AACATGGATGGA-GG-----CCATGTGTGGAAATGCGGAGTGAAAAA---GAAACA---------TT-AAT-----------TAATGATAGAAACATCTA--CCCTTTTGTACTTTATTTTTTATTA---T------T--------TTTGCTTGTC
gi|8 : tGATTTACTGCTTTAGCTTTT----CTTTTTTTGTTGTGCTGGGTGAAGG---CTGAGGATATAACTG-----CCGGTCTGTCCACTCTTCCATCCGTCCGTTTGTG----TGG--GCGTATGTGTCCGTC-----------C-GTGTGTCAA-TCTATCCAAA--TT-TTTGTCCGAGCGTAACC-CTAAAAGTACTAAAGTGACTCT----AATGA-CACT-TA------G-AAC----ATAGAGGG-----CAACATGTGGAAGTtgg
gi|9 : atttattttatacaAGTGCAGAATGAAAAAA---AAACACACTCTGTCTTCAACTCCATCTTCAATAATGACAGAATTGTTTC--CC----------TCCTCTTTT-------TAGGTAGT--------TTTGC----CCTGAGCATATCTTAAAAAA-----TAT---GGCAATGAAT-C----CAACCTGAAT-TGGAACAAGAATATAGGACCGTGTTTGGTA-CA-GAGCAAAAagatatataaagaaccatcatac
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AATTTAATGACACTTGAGGGCATTTTGTGAAAGTGCACAGAGAAAAAAATCAC
Unaligned ( gi|16 ): ATCTGTAACCCTTTTGTCTGAAGCATAACTACAAAACTATCCA
Alignments
lowQualScore : 1 111 1 111 11111 333333333333 333333333333333333 22222222222222222222222222222222222 111 222222222 11111 11111 11111 22222222222222 111 55555555555555555555555 11111111111 1111111 1111 222 1
lowQualScore : 1 1 0 111 1 3 0 1 3 9 444 5 1 1 7777 3 11111 0 1 222222222222 2 000000000000000000 88888888888888888888888888888888888 4 777 111 4 1 22 8888 4 4 888888888 1 2 11111 0 4 0 99999 55555 55555555555555 0 88 0 666 2 8888 000 88888888888888888888888 1 1 0 5 55555555555 1 1 4444444 0 888 1 1 0 0 3333 1 111 1 1 5 1
lowQualScore : . . . ... . . . . . . ... . . . .... . ..... . . ............ . .................. ................................... . ... ... . . .. .... . . ......... . . ..... . . . ..... ..... .............. . .. . ... . .... ... ....................... . . . . ........... . . ....... . ... . . . . .... . ... . . . .
lowQualScore : 0 0 0 000 0 2 2 0 2 0 000 6 0 7 9999 4 11111 1 7 222222222222 7 000000000000000000 11111111111111111111111111111111111 4 888 222 0 0 44 5555 0 0 999999999 5 0 11111 4 4 8 88888 99999 22222222222222 5 22 5 555 4 5555 000 77777777777777777777777 1 0 7 4 99999999999 0 7 9999999 1 777 0 0 2 2 7777 0 555 0 0 5 0
consensus : TAATTATCATGATTATGGTAAGAGCATANCAANT-AGTGTTAATAT-T-TAAATTACAATAACATGAACTTTCTATATTTTTCAGGACTGGATATGTTAAGAGCGACATTAAAATGCCCTGACAAAGACTTTTTTNGGGAAAAAGTCTTTACAGATGAGGATTTGGAAACTGTCAAAGAAAGATACCAAACCAATTTAGCAGAGAAGCGAAGGGACTTGGATGAATCAAGTATGTTGGTGTCTTCTATTTNTGTTATTTTTAATGGTTTTCTGCCGATTGTTAACAACTTATTGATTCGCTGC---AGCTGTTATGATTTCTTTTATTATGCTNCCCGAAGG---GCGAGCATATAGCCG-----CCGCTTTGTCCGC------------CCGTCTGTG----TGA--G--------TCCGTC-----------C-A------AA-TT------AA--TT-TCCG---GAACGTAACT-CCAAAAGTNCTGAAGNGAATCC----AGTGG-CACT-T-------G-AACATGGATAGAGGG-----TAATGTGTGGAAGTGCAGAACGAAAAAATCGNAACAAA---TATCTTGAAT----------ATAACGACAGAATTATCTC--NCCTTNTG----TTNTTTTTT-------T------T--------TTTGCTTGTCCCGANTATATCTTCATAAA-----AAT---GGNAACGAAT-C----AAATGTGA-C-TGGAACANGGATANAGGGCAGTGTGTGGTA-TA-GAATAAAAGGTTCTCTGCTTGGTANATCATCATCTATTATAATCGACCTCCCATAAAGAAAGTGNCCTTGAATTAACATCTGAACACATCGGTCTCCTAAACATGTCCGAATCGATCAANCTTGGANAA
Reference ( family-5589 ) : TAATTATCATGATTATGGTAAGAGCATANCAANT-AGTGTTAATAT-T-TAAATTACAATAACATGAACTTTCTATATTTTTCAGGACTGGATATGTTAAGAGCGACATTAAAATGCCCTGACAAAGACTTTTTTNGGGAAAAAGTCTTTACAGATGAGGATTTGGAAACTGTCAAAGAAAGATACCAAACCAATTTAGCAGAGAAGCGAAGGGACTTGGATGAATCAAGTATGTTGGTGTCTTCTATTTNTGTTATTTTTAATGGTTTTCTGCCGATTGTTAACAACTTATTGATTCGCTGC---AGCTGTTATGATTTCTTTTATTATGCTNCCCGAAGG---GCGAGCATATAGCCG-----CCGCTTTGTCCGC------------CCGTCTGTG----TGA--G--------TCCGTC-----------C-A------AA-TT------AA--TT-TCCG---GAACGTAACT-CCAAAAGTNCTGAAGNGAATCC----AGTGG-CACT-T-------G-AACATGGATAGAGGG-----TAATGTGTGGAAGTGCAGAACGAAAAAATCGNAACAAA---TATCTTGAAT----------ATAACGACAGAATTATCTC--NCCTTNTG----TTNTTTTTT-------T------T--------TTTGCTTGTCCCGANTATATCTTCATAAA-----AAT---GGNAACGAAT-C----AAATGTGA-C-TGGAACANGGATANAGGGCAGTGTGTGGTA-TA-GAATAAAAGGTTCTCTGCTTGGTANATCATCATCTATTATAATCGACCTCCCATAAAGAAAGTGNCCTTGAATTAACATCTGAACACATCGGTCTCCTAAACATGTCCGAATCGATCAANCTTGGANAA
gi|1 : AATTATCATGATTATGGTAAGAGCATAGCAATTTAGTGTTAATATATATAAATTTCAATAACATAAACTTTCTATATTTTTCAGGACTGGATATGTTAAAAGCGACATTAAAATGCCCTGACAAAGACTTTTTTTTGGAAAAAGTTTTTACAGATGAGGATTTGGAAACTGTCAAAGAAAGATACCAAACCAATTTAGCAGAGAAGCTAAGGGACTTGGATGAATCAAGTATGTTGGTGTCTTCTATTTTTGTTA-TTTTAATGGTTTTCTG-CGATTGTTAACAACTTATTGATTCGCTGC---AGCTGTTATGATTTCTTTTATTATGCTATCTGAAGG---GCAAACATATAGCCA-----CTGCTTTCTCCAC------------CCATCTGTG----TGA--G--------TCCATC-----------CTA------AC-TT------AA--TT-TCCG---GAAC--AACT-TCAAAAAGCCTGAAAGGAATCC----AGTGG-NNNN-N-------N-NNNNNNNNNNNNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAA---TATCTT--AT----------ATAACGAC--AATTATTTC--ACCTTGTG----TTG--GTTA-------T------T--------TTTACTTATCCCAATTATATCTTCATAAA-----AAT---CGAAACGAAT-C----CAATGTTG-C-TGGAACATGGATAAAGGGCAATGTGTGGTATTA-GAATAAAAGGTTCTCTGCTTGATAAATCATCATC---TATAATCGATCTCCCATAAAGAAAGTATCCTTGAATTAACATCTGAACACATTGGTCTCCTAAACATGTCCGAATCAATTAAACTTGGACAA
gi|10 : ---TATCTTGAAT----------A--ACGACATAATTGCCTC--CCCTTTTT----TCAATTTTTCCCCAAAT------TATA-----TTTGCTTGTCGTGAGTATATCTTCA-AAAGTTTGAAA---GGCAATTGAT-CTACAAAATGTatcacctttagaaaatgaaaaataactccgtgtt
gi|11 : tcCAAAATTACTGCATGGAATCC----AATGA-CAAT-T-------GAAACATGttacaatgtaccagtaccataact
gi|12 : ctCTTGAAT----------AT--TGACAGAATTACCTC--CCATTTTT----TTTTTTTTT-------T------TTTATTATATTTGTTTGCCCTGAGTTTACCTTCAAAAG-----TAT---GAAAGAGAATGC----AAA-GTGA-CATGGAcagtgtgaagaacaataacacttgttacataatgttgaggtatcatctcccccaataaatactttatttgtggttatttttgcttgcctggag
gi|13 : TTATGCTCCCCGA-------CAGGCATGTATCTG-----CCACTTTGCCAGT------------CCGTCCGTG----C-ATTG--------TCTGTCTATGCATCTGTC-A------AA---------AACCTTGTTCG---GAACACAGTT-CCAAAAGT
gi|14 : ttCT-CTAAAAGTACTGAACAGAATTC----AGCGA-CACT-TG------G-AACATGGGTAAAGGG-----TAATATGTGGAAG
gi|2 : TAATTATTATGATTATGGTAAGAGCATATCAAAT-AGTGTTAATAT-T-TAAATTACAATGACATGAAATTTTTATATTTTTCTGGACTGGATATGTTAAGAGCGACATTTAAATGCTCTGACAAAGACTTTTTAAGGGAAAAAGTCATTACAGATGAAGATTTGGAAACTGTCAAAGAAAGATACCAAACCTATT-AGTAGAGAAGTGAAGGGATTTGGATGAATCAAGTATGTTGATGTCTTCTATTTATGTTATTCATAATGGTTTTCTGCCGATTGTTAACAACTTATTGATTCGCTGC---AGCTGTTATGATTTCTTTTATCATGCTATCTGAAGG---GCAAACATATAGCCA-----CTGCTTTGTCCAC------------CCATCTGTG----TGA--G--------TCAATC-----------C-A------AA--T------AA--TT-TCCG---GAACTTTACT-CCAAAAATCCTGAAAAGAATCC----AGTGG-CACTAT-------G-AACTTGGATAGATGGTACATTAATATGTGGAAGTGCAGAACAAACAAATCGTAACAAA---TATCTTGAAT----------ATAATGACATAATTATTTC--GCCTTATG----TTGTTTTTT-------T------T--------TTTACTTATCCCGATTATATCTTCATAAT-----AAT---GGAAACGAAT-C----ACGTGTGA-C-TGGAACATGGATATAGGGCATTGTGTGGTA-TATGAATAAAAGGTTCTCTGCTTGGTATATCATCATCTATTATAATCGACCTCCCATAAAGAAAGTGGCCTTGAATTAACATCTGAACACATCGGTCTCCTAAACATGTCCGAATCGATCAATC-TGGAAAA
gi|3 : TAATTGTCATGATTATGGTTAGAGCATATCAAAT-AGTGTTAATAT-T-TAAATTACAATAACATAAACTTTCTATATTTTTCAGGACTGGTTATGTTAGGAGCGACATTAAAATGTTCCGACAAAGACTTTTTTGGGGAAAAAGTCTTTACAGATGAGGATTTGGAAACTGTCAACGAAAGATACCAAACCAATTTAGCCGAGAAACGAAACGACTTAGATGAATCAAGTATGTTGGTGTCATCTATTTATGTTATTTTTAATGTTTTTTTGTCGATTGTTAACAACTTATTAATTCGCTGC---AGCTGTTCTGATTTCTTTTATTATGTTATCTGAAGG---GCAAACATATAGTCA-----CTGCTTTGTCCAC------------CCTTCTTTG----TGA--G--------TCCGTC-----------C-A------AATTT------AA--TT-TCCG---GAACAT--CT-TCAAAAATCCTGAAAGAAATCC----AGTTG-NNNN-N-------N-NNNNNNNNNNNNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAA---TATCT----T----------ATAACGAT--AATTATTTC--GCCTTATG----T--TTGTTA-------T------T--------TTTACTTATGCCGATTATATTTTCATGAA-----ATT---AGCAACGAAT-C----CAGTGTTA-C-T
gi|4 : AATTATCATGATTATGGTAAGAGCATAGCAATT-AGTGTTAATAT-T-TAAATTACAATAACATGAACTTTCTATGATTTTCAGGACTGGATATGTTAAAAGCGACATTAAAATGCCCTGACAAAGACTTTTTTTGGGAAAAAGTCTTTACAGATGAGGATTTGGCAACTGTCAAAGAAAGATACCAAACCAATTTAGCAGAGAAGAGAAGGGACTTGGATGAATCAAGTATGTTGGTGTCTTCTATTTTTGTTATTTTTAATGGTTTTCTG-CAATTGTTAACAACTTATTGATTCGCTGC---AGCTGTTATGATTTCTTTTATTATGCTATCTGAAGG---GCAAACATATAGCCA-----CTGCTTTCTCCAC------------CCATCTGTG----TGA--G--------TCCATC-----------C-A------AACTT------AA--TT-TCCG---GAAC--AACT-TCAAAAAGCCTGAAATGAATCC----AGTGGNNNNN-N-------N-NNNNNNNNNNNNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAA---TATCTTG--T----------ATAACGAC--AATTATTTC--ACCTTGTG----
gi|5 : TTATGCTCCCCTAAAG---ACGAGTATACAGCTGACCCACCACTTTGTCAGTGTTA--------CATTCTGTG----TAT--GCTA-----TCCATA-----------C-A------AA-TA------CA--TG-TCCA---GAATATAACTCCCAAAAGTGTTCAAGC-AATAC----AGT-G-CACT-T-------GCAGCATGTATAAAGGG-----TAGTGTTTGCAAGTGCA-AAC------ATTCTAAC-----------TGGA-----------ATAAAGGCAGAGTTATCTT--ACCTTTTG----TAC--TTTA-------T------T--------TTTGCTTGTCTGGATAATATCTT--TGAA-----ATTCCCGGG---GAATCC----ACATG-GG-T-TTGAACAAAGATAGAAATCAGTGTGT
gi|6 : cttTTTTTTCAAGCTCC---AAGGAATGCAAGCATATAGCTG-----TCA-TTTGTTTGT------------GAGTTTGTGCACATGC--T--------TCCTTC-----------C-A------AA-TT------TG--TT-TCCA---GAGCATTACT-TCAGATATACTGAAGCGAATTC----AGTAA-CATT-T----------ACATGGATTGAGGC-----TAATGCTCGGAAGTACAGAGCAAAAAAA--AAAACAAGAC-TGCCTTGA------------ATAATGACAGAATTGTGTCCACTCTTTTT----TTTTTTTTT-------T------TCTTTTATATTTGATTGTCCTGAGTATa
gi|7 : TCTTATAAGGCTCCCCGATGG---TCTAACATAAAGTTG-----TTGTTTTGTCCTT------------CCATTTGTT----CAACTG--------TCTGTC-----------C-A------AA-TT------CC--CA-TCCA---AAATGTAGCT-CCAAAAGTGCTGAAGGGAATTCATTTAATGA-CACT-TAAAATTCA-AACATGGATGGA-GG-----CCATGTGTGGAAATGCGGAGTGAAAAA---GAAACA---------TT-AAT-----------TAATGATAGAAACATCTA--CCCTTTTGTACTTTATTTTTTATTA---T------T--------TTTGCTTGTC
gi|8 : tGATTTACTGCTTTAGCTTTT----CTTTTTTTGTTGTGCTGGGTGAAGG---CTGAGGATATAACTG-----CCGGTCTGTCCACTCTTCCATCCGTCCGTTTGTG----TGG--GCGTATGTGTCCGTC-----------C-GTGTGTCAA-TCTATCCAAA--TT-TTTGTCCGAGCGTAACC-CTAAAAGTACTAAAGTGACTCT----AATGA-CACT-TA------G-AAC----ATAGAGGG-----CAACATGTGGAAGTtgg
gi|9 : atttattttatacaAGTGCAGAATGAAAAAA---AAACACACTCTGTCTTCAACTCCATCTTCAATAATGACAGAATTGTTTC--CC----------TCCTCTTTT-------TAGGTAGT--------TTTGC----CCTGAGCATATCTTAAAAAA-----TAT---GGCAATGAAT-C----CAACCTGAAT-TGGAACAAGAATATAGGACCGTGTTTGGTA-CA-GAGCAAAAagatatataaagaaccatcatac
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AATTTAATGACACTTGAGGGCATTTTGTGAAAGTGCACAGAGAAAAAAATCAC
Unaligned ( gi|16 ): ATCTGTAACCCTTTTGTCTGAAGCATAACTACAAAACTATCCA
Alignments
lowQualScore : 1 111 1 111 11111 333333333333 333333333333333333 22222222222222222222222222222222222 111 222222222 11111 11111 11111 22222222222222 111 55555555555555555555555 11111111111 1111111 1111 222 1
lowQualScore : 1 1 0 111 1 3 0 1 3 9 444 5 1 1 7777 3 11111 0 1 222222222222 2 000000000000000000 88888888888888888888888888888888888 4 777 111 4 1 22 8888 4 4 888888888 1 2 11111 0 4 0 99999 55555 55555555555555 0 88 0 666 2 8888 000 88888888888888888888888 1 1 0 5 55555555555 1 1 4444444 0 888 1 1 0 0 3333 1 111 1 1 5 1
lowQualScore : . . . ... . . . . . . ... . . . .... . ..... . . ............ . .................. ................................... . ... ... . . .. .... . . ......... . . ..... . . . ..... ..... .............. . .. . ... . .... ... ....................... . . . . ........... . . ....... . ... . . . . .... . ... . . . .
lowQualScore : 0 0 0 000 0 2 2 0 2 0 000 6 0 7 9999 4 11111 1 7 222222222222 7 000000000000000000 11111111111111111111111111111111111 4 888 222 0 0 44 5555 0 0 999999999 5 0 11111 4 4 8 88888 99999 22222222222222 5 22 5 555 4 5555 000 77777777777777777777777 1 0 7 4 99999999999 0 7 9999999 1 777 0 0 2 2 7777 0 555 0 0 5 0
consensus : TAATTATCATGATTATGGTAAGAGCATANCAANT-AGTGTTAATAT-T-TAAATTACAATAACATGAACTTTCTATATTTTTCAGGACTGGATATGTTAAGAGCGACATTAAAATGCCCTGACAAAGACTTTTTTNGGGAAAAAGTCTTTACAGATGAGGATTTGGAAACTGTCAAAGAAAGATACCAAACCAATTTAGCAGAGAAGCGAAGGGACTTGGATGAATCAAGTATGTTGGTGTCTTCTATTTNTGTTATTTTTAATGGTTTTCTGCCGATTGTTAACAACTTATTGATTCGCTGC---AGCTGTTATGATTTCTTTTATTATGCTNCCCGAAGG---GCGAGCATATAGCCG-----CCGCTTTGTCCGC------------CCGTCTGTG----TGA--G--------TCCGTC-----------C-A------AA-TT------AA--TT-TCCG---GAACGTAACT-CCAAAAGTNCTGAAGNGAATCC----AGTGG-CACT-T-------G-AACATGGATAGAGGG-----TAATGTGTGGAAGTGCAGAACGAAAAAATCGNAACAAA---TATCTTGAAT----------ATAACGACAGAATTATCTC--NCCTTNTG----TTNTTTTTT-------T------T--------TTTGCTTGTCCCGANTATATCTTCATAAA-----AAT---GGNAACGAAT-C----AAATGTGA-C-TGGAACANGGATANAGGGCAGTGTGTGGTA-TA-GAATAAAAGGTTCTCTGCTTGGTANATCATCATCTATTATAATCGACCTCCCATAAAGAAAGTGNCCTTGAATTAACATCTGAACACATCGGTCTCCTAAACATGTCCGAATCGATCAANCTTGGANAA
Reference ( family-5589 ) : TAATTATCATGATTATGGTAAGAGCATANCAANT-AGTGTTAATAT-T-TAAATTACAATAACATGAACTTTCTATATTTTTCAGGACTGGATATGTTAAGAGCGACATTAAAATGCCCTGACAAAGACTTTTTTNGGGAAAAAGTCTTTACAGATGAGGATTTGGAAACTGTCAAAGAAAGATACCAAACCAATTTAGCAGAGAAGCGAAGGGACTTGGATGAATCAAGTATGTTGGTGTCTTCTATTTNTGTTATTTTTAATGGTTTTCTGCCGATTGTTAACAACTTATTGATTCGCTGC---AGCTGTTATGATTTCTTTTATTATGCTNCCCGAAGG---GCGAGCATATAGCCG-----CCGCTTTGTCCGC------------CCGTCTGTG----TGA--G--------TCCGTC-----------C-A------AA-TT------AA--TT-TCCG---GAACGTAACT-CCAAAAGTNCTGAAGNGAATCC----AGTGG-CACT-T-------G-AACATGGATAGAGGG-----TAATGTGTGGAAGTGCAGAACGAAAAAATCGNAACAAA---TATCTTGAAT----------ATAACGACAGAATTATCTC--NCCTTNTG----TTNTTTTTT-------T------T--------TTTGCTTGTCCCGANTATATCTTCATAAA-----AAT---GGNAACGAAT-C----AAATGTGA-C-TGGAACANGGATANAGGGCAGTGTGTGGTA-TA-GAATAAAAGGTTCTCTGCTTGGTANATCATCATCTATTATAATCGACCTCCCATAAAGAAAGTGNCCTTGAATTAACATCTGAACACATCGGTCTCCTAAACATGTCCGAATCGATCAANCTTGGANAA
gi|1 : AATTATCATGATTATGGTAAGAGCATAGCAATTTAGTGTTAATATATATAAATTTCAATAACATAAACTTTCTATATTTTTCAGGACTGGATATGTTAAAAGCGACATTAAAATGCCCTGACAAAGACTTTTTTTTGGAAAAAGTTTTTACAGATGAGGATTTGGAAACTGTCAAAGAAAGATACCAAACCAATTTAGCAGAGAAGCTAAGGGACTTGGATGAATCAAGTATGTTGGTGTCTTCTATTTTTGTTA-TTTTAATGGTTTTCTG-CGATTGTTAACAACTTATTGATTCGCTGC---AGCTGTTATGATTTCTTTTATTATGCTATCTGAAGG---GCAAACATATAGCCA-----CTGCTTTCTCCAC------------CCATCTGTG----TGA--G--------TCCATC-----------CTA------AC-TT------AA--TT-TCCG---GAAC--AACT-TCAAAAAGCCTGAAAGGAATCC----AGTGG-NNNN-N-------N-NNNNNNNNNNNNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAA---TATCTT--AT----------ATAACGAC--AATTATTTC--ACCTTGTG----TTG--GTTA-------T------T--------TTTACTTATCCCAATTATATCTTCATAAA-----AAT---CGAAACGAAT-C----CAATGTTG-C-TGGAACATGGATAAAGGGCAATGTGTGGTATTA-GAATAAAAGGTTCTCTGCTTGATAAATCATCATC---TATAATCGATCTCCCATAAAGAAAGTATCCTTGAATTAACATCTGAACACATTGGTCTCCTAAACATGTCCGAATCAATTAAACTTGGACAA
gi|10 : ---TATCTTGAAT----------A--ACGACATAATTGCCTC--CCCTTTTT----TCAATTTTTCCCCAAAT------TATA-----TTTGCTTGTCGTGAGTATATCTTCA-AAAGTTTGAAA---GGCAATTGAT-CTACAAAATGTatcacctttagaaaatgaaaaataactccgtgtt
gi|11 : tcCAAAATTACTGCATGGAATCC----AATGA-CAAT-T-------GAAACATGttacaatgtaccagtaccataact
gi|12 : ctCTTGAAT----------AT--TGACAGAATTACCTC--CCATTTTT----TTTTTTTTT-------T------TTTATTATATTTGTTTGCCCTGAGTTTACCTTCAAAAG-----TAT---GAAAGAGAATGC----AAA-GTGA-CATGGAcagtgtgaagaacaataacacttgttacataatgttgaggtatcatctcccccaataaatactttatttgtggttatttttgcttgcctggag
gi|13 : TTATGCTCCCCGA-------CAGGCATGTATCTG-----CCACTTTGCCAGT------------CCGTCCGTG----C-ATTG--------TCTGTCTATGCATCTGTC-A------AA---------AACCTTGTTCG---GAACACAGTT-CCAAAAGT
gi|14 : ttCT-CTAAAAGTACTGAACAGAATTC----AGCGA-CACT-TG------G-AACATGGGTAAAGGG-----TAATATGTGGAAG
gi|2 : TAATTATTATGATTATGGTAAGAGCATATCAAAT-AGTGTTAATAT-T-TAAATTACAATGACATGAAATTTTTATATTTTTCTGGACTGGATATGTTAAGAGCGACATTTAAATGCTCTGACAAAGACTTTTTAAGGGAAAAAGTCATTACAGATGAAGATTTGGAAACTGTCAAAGAAAGATACCAAACCTATT-AGTAGAGAAGTGAAGGGATTTGGATGAATCAAGTATGTTGATGTCTTCTATTTATGTTATTCATAATGGTTTTCTGCCGATTGTTAACAACTTATTGATTCGCTGC---AGCTGTTATGATTTCTTTTATCATGCTATCTGAAGG---GCAAACATATAGCCA-----CTGCTTTGTCCAC------------CCATCTGTG----TGA--G--------TCAATC-----------C-A------AA--T------AA--TT-TCCG---GAACTTTACT-CCAAAAATCCTGAAAAGAATCC----AGTGG-CACTAT-------G-AACTTGGATAGATGGTACATTAATATGTGGAAGTGCAGAACAAACAAATCGTAACAAA---TATCTTGAAT----------ATAATGACATAATTATTTC--GCCTTATG----TTGTTTTTT-------T------T--------TTTACTTATCCCGATTATATCTTCATAAT-----AAT---GGAAACGAAT-C----ACGTGTGA-C-TGGAACATGGATATAGGGCATTGTGTGGTA-TATGAATAAAAGGTTCTCTGCTTGGTATATCATCATCTATTATAATCGACCTCCCATAAAGAAAGTGGCCTTGAATTAACATCTGAACACATCGGTCTCCTAAACATGTCCGAATCGATCAATC-TGGAAAA
gi|3 : TAATTGTCATGATTATGGTTAGAGCATATCAAAT-AGTGTTAATAT-T-TAAATTACAATAACATAAACTTTCTATATTTTTCAGGACTGGTTATGTTAGGAGCGACATTAAAATGTTCCGACAAAGACTTTTTTGGGGAAAAAGTCTTTACAGATGAGGATTTGGAAACTGTCAACGAAAGATACCAAACCAATTTAGCCGAGAAACGAAACGACTTAGATGAATCAAGTATGTTGGTGTCATCTATTTATGTTATTTTTAATGTTTTTTTGTCGATTGTTAACAACTTATTAATTCGCTGC---AGCTGTTCTGATTTCTTTTATTATGTTATCTGAAGG---GCAAACATATAGTCA-----CTGCTTTGTCCAC------------CCTTCTTTG----TGA--G--------TCCGTC-----------C-A------AATTT------AA--TT-TCCG---GAACAT--CT-TCAAAAATCCTGAAAGAAATCC----AGTTG-NNNN-N-------N-NNNNNNNNNNNNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAA---TATCT----T----------ATAACGAT--AATTATTTC--GCCTTATG----T--TTGTTA-------T------T--------TTTACTTATGCCGATTATATTTTCATGAA-----ATT---AGCAACGAAT-C----CAGTGTTA-C-T
gi|4 : AATTATCATGATTATGGTAAGAGCATAGCAATT-AGTGTTAATAT-T-TAAATTACAATAACATGAACTTTCTATGATTTTCAGGACTGGATATGTTAAAAGCGACATTAAAATGCCCTGACAAAGACTTTTTTTGGGAAAAAGTCTTTACAGATGAGGATTTGGCAACTGTCAAAGAAAGATACCAAACCAATTTAGCAGAGAAGAGAAGGGACTTGGATGAATCAAGTATGTTGGTGTCTTCTATTTTTGTTATTTTTAATGGTTTTCTG-CAATTGTTAACAACTTATTGATTCGCTGC---AGCTGTTATGATTTCTTTTATTATGCTATCTGAAGG---GCAAACATATAGCCA-----CTGCTTTCTCCAC------------CCATCTGTG----TGA--G--------TCCATC-----------C-A------AACTT------AA--TT-TCCG---GAAC--AACT-TCAAAAAGCCTGAAATGAATCC----AGTGGNNNNN-N-------N-NNNNNNNNNNNNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAA---TATCTTG--T----------ATAACGAC--AATTATTTC--ACCTTGTG----
gi|5 : TTATGCTCCCCTAAAG---ACGAGTATACAGCTGACCCACCACTTTGTCAGTGTTA--------CATTCTGTG----TAT--GCTA-----TCCATA-----------C-A------AA-TA------CA--TG-TCCA---GAATATAACTCCCAAAAGTGTTCAAGC-AATAC----AGT-G-CACT-T-------GCAGCATGTATAAAGGG-----TAGTGTTTGCAAGTGCA-AAC------ATTCTAAC-----------TGGA-----------ATAAAGGCAGAGTTATCTT--ACCTTTTG----TAC--TTTA-------T------T--------TTTGCTTGTCTGGATAATATCTT--TGAA-----ATTCCCGGG---GAATCC----ACATG-GG-T-TTGAACAAAGATAGAAATCAGTGTGT
gi|6 : cttTTTTTTCAAGCTCC---AAGGAATGCAAGCATATAGCTG-----TCA-TTTGTTTGT------------GAGTTTGTGCACATGC--T--------TCCTTC-----------C-A------AA-TT------TG--TT-TCCA---GAGCATTACT-TCAGATATACTGAAGCGAATTC----AGTAA-CATT-T----------ACATGGATTGAGGC-----TAATGCTCGGAAGTACAGAGCAAAAAAA--AAAACAAGAC-TGCCTTGA------------ATAATGACAGAATTGTGTCCACTCTTTTT----TTTTTTTTT-------T------TCTTTTATATTTGATTGTCCTGAGTATa
gi|7 : TCTTATAAGGCTCCCCGATGG---TCTAACATAAAGTTG-----TTGTTTTGTCCTT------------CCATTTGTT----CAACTG--------TCTGTC-----------C-A------AA-TT------CC--CA-TCCA---AAATGTAGCT-CCAAAAGTGCTGAAGGGAATTCATTTAATGA-CACT-TAAAATTCA-AACATGGATGGA-GG-----CCATGTGTGGAAATGCGGAGTGAAAAA---GAAACA---------TT-AAT-----------TAATGATAGAAACATCTA--CCCTTTTGTACTTTATTTTTTATTA---T------T--------TTTGCTTGTC
gi|8 : tGATTTACTGCTTTAGCTTTT----CTTTTTTTGTTGTGCTGGGTGAAGG---CTGAGGATATAACTG-----CCGGTCTGTCCACTCTTCCATCCGTCCGTTTGTG----TGG--GCGTATGTGTCCGTC-----------C-GTGTGTCAA-TCTATCCAAA--TT-TTTGTCCGAGCGTAACC-CTAAAAGTACTAAAGTGACTCT----AATGA-CACT-TA------G-AAC----ATAGAGGG-----CAACATGTGGAAGTtgg
gi|9 : atttattttatacaAGTGCAGAATGAAAAAA---AAACACACTCTGTCTTCAACTCCATCTTCAATAATGACAGAATTGTTTC--CC----------TCCTCTTTT-------TAGGTAGT--------TTTGC----CCTGAGCATATCTTAAAAAA-----TAT---GGCAATGAAT-C----CAACCTGAAT-TGGAACAAGAATATAGGACCGTGTTTGGTA-CA-GAGCAAAAagatatataaagaaccatcatac
blockSeqs : T A . T A T A T C TTT A C C AATG A ACCCA G TCTTCCATCCGT G TGGGCGTATGTG CGTGTGTCAATCTATCCAAA G TCC ACA C A TG ATTT N A AAAATTCA A G TACAT A ATCGT CACTC CAACTCCATCTTCA AT CAC T TACT CAA CCCCAAATTATA T G A GTTTGAAA C T CTACAA CA T T TAT T TAT G T . A
blockSeqs : T A . T G T A T T . C A T G A . A GTTA A CACATGCT TATGCATCTGTCAAAAACC . . TTT . A CA . . . GA A T . N NNNNN AGAC GAAT AG C T . TTT TTTTATTATA T G T ATTCCC A A GCA AT A G CA
blockSeqs : G T . T T . T T . . A A T G A . A . T TATGCTA CAAATTTAA . . ATA . C AA . . . GG T N . N NNNNN AA GAAT AT C A . TGT TTCTTTTATA C T T TAT A C CCA C A T
blockSeqs : . . A T G A . A . A CAACTG CAAACTTAA . . ATT . C AG . . . GC N N . A ATTCT AA GAAT AG G A . TTT TAGGTAGT C T T AAT C C CA C
blockSeqs : C C A G . G . T CATTG CAAATACA . . GTA . C AT . . . AG N G . G AAA AA GGA AG G G . TAT ATTATT G T A ATT G T CC T
blockSeqs : C C T A . G . G TGAG CAAATTTG . . GTA . G GC . . . G A G . G GA . AAT AG A T . CCT TT T G . TAT C . CC
blockSeqs : C T C T . T . A TGAG CAAATTCC . . AT . A GC . . . N A G . . AA . GT AG A T . AC TT T G
blockSeqs : G . . G . A . G TGAG CAAATAA . . A . G GG . . . N A . . GA . C T . T TT
blockSeqs : . A GT . . . . . T . C . .
blockSeqCons : CAAATTTAA************************** ATA G******** GAAT********** AG TNT
originalCons : TAATTATCATGATTATGGTAAGAGCATANCAANT-AGTGTTAATAT-T-TAAATTACAATAACATGAACTTTCTATATTTTTCAGGACTGGATATGTTAAGAGCGACATTAAAATGCCCTGACAAAGACTTTTTTNGGGAAAAAGTCTTTACAGATGAGGATTTGGAAACTGTCAAAGAAAGATACCAAACCAATTTAGCAGAGAAGCGAAGGGACTTGGATGAATCAAGTATGTTGGTGTCTTCTATTTNTGTTATTTTTAATGGTTTTCTGCCGATTGTTAACAACTTATTGATTCGCTGC---AGCTGTTATGATTTCTTTTATTATGCTNCCCGAAGG---GCGAGCATATAGCCG-----CCGCTTTGTCCGC------------CCGTCTGTG----TGA--G--------TCCGTC-----------C-A------AA-TT------AA--TT-TCCG---GAACGTAACT-CCAAAAGTNCTGAAGNGAATCC----AGTGG-CACT-T-------G-AACATGGATAGAGGG-----TAATGTGTGGAAGTGCAGAACGAAAAAATCGNAACAAA---TATCTTGAAT----------ATAACGACAGAATTATCTC--NCCTTNTG----TTNTTTTTT-------T------T--------TTTGCTTGTCCCGANTATATCTTCATAAA-----AAT---GGNAACGAAT-C----AAATGTGA-C-TGGAACANGGATANAGGGCAGTGTGTGGTA-TA-GAATAAAAGGTTCTCTGCTTGGTANATCATCATCTATTATAATCGACCTCCCATAAAGAAAGTGNCCTTGAATTAACATCTGAACACATCGGTCTCCTAAACATGTCCGAATCGATCAANCTTGGANAA
finalCons : TAATTATCATGATTATGGTAAGAGCATANCAANT-AGTGTTAATAT-T-TAAATTACAATAACATGAACTTTCTATATTTTTCAGGACTGGATATGTTAAGAGCGACATTAAAATGCCCTGACAAAGACTTTTTTNGGGAAAAAGTCTTTACAGATGAGGATTTGGAAACTGTCAAAGAAAGATACCAAACCAATTTAGCAGAGAAGCGAAGGGACTTGGATGAATCAAGTATGTTGGTGTCTTCTATTTNTGTTATTTTTAATGGTTTTCTGCCGATTGTTAACAACTTATTGATTCGCTGC---AGCTGTTATGATTTCTTTTATTATGCTNCCCGAAGG---GCGAGCATATAGCCG-----CCGCTTTGTCCGC------------CCGTCTGTG----TGA--G--------TCCGTCCAAATTTAA--------------------------TT-TCCG---GAACATAACT-CCAAAAGTNCTGAAGNGAATCC----AGTGG-CACT-TG--------AACATGGATAGAGGG-----TAATGTGTGGAAGTGCAGAACGAAAAAATCGNAACAAA---TATCTTGAAT----------ATAACGACAGAATTATCTC--NCCTTNTG----TTNTTTTTT-------T------T--------TTTGCTTGTCCCGANTATATCTTCATAAA-----AAT---GGNAACGAAT-C----AAATGTGA-C-TGGAACANGGATANAGGGCAGTGTGTGGTA-TA-GAATAAAAGGTTCTCTGCTTGGTANATCATCATCTATTATAATCGACCTCCCATAAAGAAAGTGNCCTTGAATTAACATCTGAACACATCGGTCTCCTAAACATGTCCGAATCGATCAANCTTGGANAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AATTTAATGACACTTGAGGGCATTTTGTGAAAGTGCACAGAGAAAAAAATCAC
Unaligned ( gi|16 ): ATCTGTAACCCTTTTGTCTGAAGCATAACTACAAAACTATCCA
Alignments
lowQualScore : 1 111 1 111 11111 333333333333 333333333333333333 3333333333333333333333 222222222 11111 11111 11111 22222222222222 111 55555555555555555555555 11111111111 1111111 1111 222 1
lowQualScore : 1 1 0 111 1 3 0 1 3 9 444 5 1 1 7777 3 11111 0 1 222222222222 2 000000000000000000 6666666666666666666666 4 777 888 4 1 22 8888 4 4 888888888 1 2 11111 0 4 0 99999 55555 55555555555555 0 88 0 666 2 8888 000 88888888888888888888888 1 1 0 5 55555555555 1 1 4444444 0 888 1 1 0 0 3333 1 111 1 1 5 1
lowQualScore : . . . ... . . . . . . ... . . . .... . ..... . . ............ . .................. ...................... . ... ... . . .. .... . . ......... . . ..... . . . ..... ..... .............. . .. . ... . .... ... ....................... . . . . ........... . . ....... . ... . . . . .... . ... . . . .
lowQualScore : 0 0 0 000 0 2 2 0 2 0 000 6 0 7 9999 4 11111 1 7 222222222222 7 000000000000000000 2222222222222222222222 4 888 333 0 0 44 5555 0 0 999999999 5 0 11111 4 4 8 88888 99999 22222222222222 5 22 5 555 4 5555 000 77777777777777777777777 1 0 7 4 99999999999 0 7 9999999 1 777 0 0 2 2 7777 0 555 0 0 5 0
consensus : TAATTATCATGATTATGGTAAGAGCATANCAANT-AGTGTTAATAT-T-TAAATTACAATAACATGAACTTTCTATATTTTTCAGGACTGGATATGTTAAGAGCGACATTAAAATGCCCTGACAAAGACTTTTTTNGGGAAAAAGTCTTTACAGATGAGGATTTGGAAACTGTCAAAGAAAGATACCAAACCAATTTAGCAGAGAAGCGAAGGGACTTGGATGAATCAAGTATGTTGGTGTCTTCTATTTNTGTTATTTTTAATGGTTTTCTGCCGATTGTTAACAACTTATTGATTCGCTGC---AGCTGTTATGATTTCTTTTATTATGCTNCCCGAAGG---GCGAGCATATAGCCG-----CCGCTTTGTCCGC------------CCGTCTGTG----TGA--G--------TCCGTCCA------AATTT------A-A--TT-TCCG---GAACGTAACT-CCAAAAGTNCTGAAGNGAATCC----AGTGG-CACT-T-------G-AACATGGATAGAGGG-----TAATGTGTGGAAGTGCAGAACGAAAAAATCGNAACAAA---TATCTTGAAT----------ATAACGACAGAATTATCTC--NCCTTNTG----TTNTTTTTT-------T------T--------TTTGCTTGTCCCGANTATATCTTCATAAA-----AAT---GGNAACGAAT-C----AAATGTGA-C-TGGAACANGGATANAGGGCAGTGTGTGGTA-TA-GAATAAAAGGTTCTCTGCTTGGTANATCATCATCTATTATAATCGACCTCCCATAAAGAAAGTGNCCTTGAATTAACATCTGAACACATCGGTCTCCTAAACATGTCCGAATCGATCAANCTTGGANAA
Reference ( family-5589 ) : TAATTATCATGATTATGGTAAGAGCATANCAANT-AGTGTTAATAT-T-TAAATTACAATAACATGAACTTTCTATATTTTTCAGGACTGGATATGTTAAGAGCGACATTAAAATGCCCTGACAAAGACTTTTTTNGGGAAAAAGTCTTTACAGATGAGGATTTGGAAACTGTCAAAGAAAGATACCAAACCAATTTAGCAGAGAAGCGAAGGGACTTGGATGAATCAAGTATGTTGGTGTCTTCTATTTNTGTTATTTTTAATGGTTTTCTGCCGATTGTTAACAACTTATTGATTCGCTGC---AGCTGTTATGATTTCTTTTATTATGCTNCCCGAAGG---GCGAGCATATAGCCG-----CCGCTTTGTCCGC------------CCGTCTGTG----TGA--G--------TCCGTCCA------AATTT------A-A--TT-TCCG---GAACATAACT-CCAAAAGTNCTGAAGNGAATCC----AGTGG-CACT-T-------G-AACATGGATAGAGGG-----TAATGTGTGGAAGTGCAGAACGAAAAAATCGNAACAAA---TATCTTGAAT----------ATAACGACAGAATTATCTC--NCCTTNTG----TTNTTTTTT-------T------T--------TTTGCTTGTCCCGANTATATCTTCATAAA-----AAT---GGNAACGAAT-C----AAATGTGA-C-TGGAACANGGATANAGGGCAGTGTGTGGTA-TA-GAATAAAAGGTTCTCTGCTTGGTANATCATCATCTATTATAATCGACCTCCCATAAAGAAAGTGNCCTTGAATTAACATCTGAACACATCGGTCTCCTAAACATGTCCGAATCGATCAANCTTGGANAA
gi|1 : AATTATCATGATTATGGTAAGAGCATAGCAATTTAGTGTTAATATATATAAATTTCAATAACATAAACTTTCTATATTTTTCAGGACTGGATATGTTAAAAGCGACATTAAAATGCCCTGACAAAGACTTTTTTTTGGAAAAAGTTTTTACAGATGAGGATTTGGAAACTGTCAAAGAAAGATACCAAACCAATTTAGCAGAGAAGCTAAGGGACTTGGATGAATCAAGTATGTTGGTGTCTTCTATTTTTGTTA-TTTTAATGGTTTTCTG-CGATTGTTAACAACTTATTGATTCGCTGC---AGCTGTTATGATTTCTTTTATTATGCTATCTGAAGG---GCAAACATATAGCCA-----CTGCTTTCTCCAC------------CCATCTGTG----TGA--G--------TCCATCCT------AACTT------A-A--TT-TCCG---GAAC--AACT-TCAAAAAGCCTGAAAGGAATCC----AGTGG-NNNN-N-------N-NNNNNNNNNNNNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAA---TATCTT--AT----------ATAACGAC--AATTATTTC--ACCTTGTG----TTG--GTTA-------T------T--------TTTACTTATCCCAATTATATCTTCATAAA-----AAT---CGAAACGAAT-C----CAATGTTG-C-TGGAACATGGATAAAGGGCAATGTGTGGTATTA-GAATAAAAGGTTCTCTGCTTGATAAATCATCATC---TATAATCGATCTCCCATAAAGAAAGTATCCTTGAATTAACATCTGAACACATTGGTCTCCTAAACATGTCCGAATCAATTAAACTTGGACAA
gi|10 : ---TATCTTGAAT----------A--ACGACATAATTGCCTC--CCCTTTTT----TCAATTTTTCCCCAAAT------TATA-----TTTGCTTGTCGTGAGTATATCTTCA-AAAGTTTGAAA---GGCAATTGAT-CTACAAAATGTatcacctttagaaaatgaaaaataactccgtgtt
gi|11 : tcCAAAATTACTGCATGGAATCC----AATGA-CAAT-T-------GAAACATGttacaatgtaccagtaccataact
gi|12 : ctCTTGAAT----------AT--TGACAGAATTACCTC--CCATTTTT----TTTTTTTTT-------T------TTTATTATATTTGTTTGCCCTGAGTTTACCTTCAAAAG-----TAT---GAAAGAGAATGC----AAA-GTGA-CATGGAcagtgtgaagaacaataacacttgttacataatgttgaggtatcatctcccccaataaatactttatttgtggttatttttgcttgcctggag
gi|13 : TTATGCTCCCCGA-------CAGGCATGTATCTG-----CCACTTTGCCAGT------------CCGTCCGTG----C-ATTG--------TCTGTCTATG----CATCTGTCAAAA-ACCTTGTTCG---GAACACAGTT-CCAAAAGT
gi|14 : ttCT-CTAAAAGTACTGAACAGAATTC----AGCGA-CACT-T-------GGAACATGGGTAAAGGG-----TAATATGTGGAAG
gi|2 : TAATTATTATGATTATGGTAAGAGCATATCAAAT-AGTGTTAATAT-T-TAAATTACAATGACATGAAATTTTTATATTTTTCTGGACTGGATATGTTAAGAGCGACATTTAAATGCTCTGACAAAGACTTTTTAAGGGAAAAAGTCATTACAGATGAAGATTTGGAAACTGTCAAAGAAAGATACCAAACCTA-TTAGTAGAGAAGTGAAGGGATTTGGATGAATCAAGTATGTTGATGTCTTCTATTTATGTTATTCATAATGGTTTTCTGCCGATTGTTAACAACTTATTGATTCGCTGC---AGCTGTTATGATTTCTTTTATCATGCTATCTGAAGG---GCAAACATATAGCCA-----CTGCTTTGTCCAC------------CCATCTGTG----TGA--G--------TCAATCCA------AA--T------A-A--TT-TCCG---GAACTTTACT-CCAAAAATCCTGAAAAGAATCC----AGTGG-CACTAT-------G-AACTTGGATAGATGGTACATTAATATGTGGAAGTGCAGAACAAACAAATCGTAACAAA---TATCTTGAAT----------ATAATGACATAATTATTTC--GCCTTATG----TTGTTTTTT-------T------T--------TTTACTTATCCCGATTATATCTTCATAAT-----AAT---GGAAACGAAT-C----ACGTGTGA-C-TGGAACATGGATATAGGGCATTGTGTGGTA-TATGAATAAAAGGTTCTCTGCTTGGTATATCATCATCTATTATAATCGACCTCCCATAAAGAAAGTGGCCTTGAATTAACATCTGAACACATCGGTCTCCTAAACATGTCCGAATCGATCAATC-TGGAAAA
gi|3 : TAATTGTCATGATTATGGTTAGAGCATATCAAAT-AGTGTTAATAT-T-TAAATTACAATAACATAAACTTTCTATATTTTTCAGGACTGGTTATGTTAGGAGCGACATTAAAATGTTCCGACAAAGACTTTTTTGGGGAAAAAGTCTTTACAGATGAGGATTTGGAAACTGTCAACGAAAGATACCAAACCAATTTAGCCGAGAAACGAAACGACTTAGATGAATCAAGTATGTTGGTGTCATCTATTTATGTTATTTTTAATGTTTTTTTGTCGATTGTTAACAACTTATTAATTCGCTGC---AGCTGTTCTGATTTCTTTTATTATGTTATCTGAAGG---GCAAACATATAGTCA-----CTGCTTTGTCCAC------------CCTTCTTTG----TGA--G--------TCCGTCCA------AATTT------A-A--TT-TCCG---GAACAT--CT-TCAAAAATCCTGAAAGAAATCC----AGTTG-NNNN-N-------N-NNNNNNNNNNNNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAA---TATCT----T----------ATAACGAT--AATTATTTC--GCCTTATG----T--TTGTTA-------T------T--------TTTACTTATGCCGATTATATTTTCATGAA-----ATT---AGCAACGAAT-C----CAGTGTTA-C-T
gi|4 : AATTATCATGATTATGGTAAGAGCATAGCAATT-AGTGTTAATAT-T-TAAATTACAATAACATGAACTTTCTATGATTTTCAGGACTGGATATGTTAAAAGCGACATTAAAATGCCCTGACAAAGACTTTTTTTGGGAAAAAGTCTTTACAGATGAGGATTTGGCAACTGTCAAAGAAAGATACCAAACCAATTTAGCAGAGAAGAGAAGGGACTTGGATGAATCAAGTATGTTGGTGTCTTCTATTTTTGTTATTTTTAATGGTTTTCTG-CAATTGTTAACAACTTATTGATTCGCTGC---AGCTGTTATGATTTCTTTTATTATGCTATCTGAAGG---GCAAACATATAGCCA-----CTGCTTTCTCCAC------------CCATCTGTG----TGA--G--------TCCATCCA------AACTT------A-A--TT-TCCG---GAAC--AACT-TCAAAAAGCCTGAAATGAATCC----AGTGGNNNNN-N-------N-NNNNNNNNNNNNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAA---TATCTTG--T----------ATAACGAC--AATTATTTC--ACCTTGTG----
gi|5 : TTATGCTCCCCTAAAG---ACGAGTATACAGCTGACCCACCACTTTGTCAGTGTTA--------CATTCTGTG----TAT--GCTA-----TCCATACA------AAT--------ACA--TG-TCCA---GAATATAACTCCCAAAAGTGTTCAAGC-AATAC----AGT-G-CACT-T-------GCAGCATGTATAAAGGG-----TAGTGTTTGCAAGTGCA-AAC------ATTCTAAC-----------TGGA-----------ATAAAGGCAGAGTTATCTT--ACCTTTTG----TAC--TTTA-------T------T--------TTTGCTTGTCTGGATAATATCTT--TGAA-----ATTCCCGGG---GAATCC----ACATG-GG-T-TTGAACAAAGATAGAAATCAGTGTGT
gi|6 : cttTTTTTTCAAGCTCC---AAGGAATGCAAGCATATAGCTG-----TCA-TTTGTTTGT------------GAGTTTGTGCACATGC--T--------TCCTTCCA------AATTT--------G--TT-TCCA---GAGCATTACT-TCAGATATACTGAAGCGAATTC----AGTAA-CATT-T----------ACATGGATTGAGGC-----TAATGCTCGGAAGTACAGAGCAAAAAAA--AAAACAAGAC-TGCCTTGA------------ATAATGACAGAATTGTGTCCACTCTTTTT----TTTTTTTTT-------T------TCTTTTATATTTGATTGTCCTGAGTATa
gi|7 : TCTTATAAGGCTCCCCGATGG---TCTAACATAAAGTTG-----TTGTTTTGTCCTT------------CCATTTGTT----CAACTG--------TCTGTCCA------AATTCCC----A-------TCCA---AAATGTAGCT-CCAAAAGTGCTGAAGGGAATTCATTTAATGA-CACT-TAAAATTCA-AACATGGATGGA-GG-----CCATGTGTGGAAATGCGGAGTGAAAAA---GAAACA---------TT-AAT-----------TAATGATAGAAACATCTA--CCCTTTTGTACTTTATTTTTTATTA---T------T--------TTTGCTTGTC
gi|8 : tGATTTACTGCTTTAGCTTTT----CTTTTTTTGTTGTGCTGGGTGAAGG---CTGAGGATATAACTG-----CCGGTCTGTCCACTCTTCCATCCGTCCGTTTGTG----TGG--GCGTATGTGTCCGTCCGTGTGTCAATCTATCCA-A-A--TT-TTTGTCCGAGCGTAACC-CTAAAAGTACTAAAGTGACTCT----AATGA-CACT-TA------G-AAC----ATAGAGGG-----CAACATGTGGAAGTtgg
gi|9 : atttattttatacaAGTGCAGAATGAAAAAA---AAACACACTCTGTCTTCAACTCCATCTTCAATAATGACAGAATTGTTTC--CC----------TCCTCTTTT-------TAGGTAGT--------TTTGC----CCTGAGCATATCTTAAAAAA-----TAT---GGCAATGAAT-C----CAACCTGAAT-TGGAACAAGAATATAGGACCGTGTTTGGTA-CA-GAGCAAAAagatatataaagaaccatcatac
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AATTTAATGACACTTGAGGGCATTTTGTGAAAGTGCACAGAGAAAAAAATCAC
Unaligned ( gi|16 ): ATCTGTAACCCTTTTGTCTGAAGCATAACTACAAAACTATCCA