lowQualScore : 2222222222222222222222222222222222222222222222222222222222222
lowQualScore : 1 44444444444 1 4 44444 111 0000000000000000000000000000000000000000000000000000000000000 1 1111 1 1 1 1 1 1 11 1 111 333
lowQualScore : 7 6 5 55555555555 5 6 7 0 0 22222 8 1 6 6 444 8 1 6666666666666666666666666666666666666666666666666666666666666 0 99 6 2 3 7777 5 6 1 0 5 0 8 7 3 7 8 3 7 2 00 7 2 88 6 6 444 11 6 1 0 777 8 0
lowQualScore : . . . ........... . . . . . ..... . . . . ... . . ............................................................. . .. . . . .... . . . . . . . . . . . . . . .. . . .. . . ... .. . . . ... . .
lowQualScore : 0 0 7 55555555555 0 0 8 0 8 33333 0 4 0 0 000 0 4 8888888888888888888888888888888888888888888888888888888888888 0 22 0 5 5 0000 0 0 8 8 0 2 8 0 2 3 3 3 3 3 00 0 2 66 0 0 000 88 0 4 8 444 0 8
consensus : GGTACTGTAATCATCATAATACATACTCAATGCTGATTGACTGCAAGGCATTTAACGAAATACAGGC-ATTTCTTTCTTTACTCTGATACGTTTAAAAGGTTTCCAGATAAATGTTTTTGTCAATTTTTCCGTATGTATAAAAATACACTTAATATAGAAGATGCCCAC-ACAAA-GTCGGTATTTGTCATTCTATTGTTAATAGGCGGAAACTCTAATTGGTGACAGTGTTGTTGTCCCTGTAAATTTAGTC---TAGCAGTC-TAACTTTCCATTATTATAGAATGCAGGACGGGGTCTGACTAAT--------------------CCTCCC-----------------CC--------AC---N--C-AAACTCCCTTAAT--TGCAGCGGCGTCGTGTCGGTCTTCCTTTGTGATCTACACAATGCATATTTGACACGCGTTGTTTTAGCAATATAAGAAA----CATAAGCAATATTTTAATGACTGCAAAACGTACATCTACTGTTTAAAATAATCTACATTATTTTGTTTTATGATTTAAGTATGTTTGAAAACGTTTTCTC-CGAAAAGGAAATTTATAATANATATTTTAAAATATTGATTTCGTTAACGCTAAATTGCATAATATGTACATGC---GATAATAATATTTTTAGAACGACAACTAGAAAGTAAGTCGTTT-GAGTTTAAATATATGTTTATAATAAATGCATACATGCATCAATGAA
Reference ( gi|1 ) : GGTACTGTAATCATCATTATACATACTCAATGCTGATTGACTGCAAGGCATTTAACAAAATACAGGC-A----TTT----ACTCGGATACGTTCAAAAGGTTTCTAGATAAATGTTTT-GTCAATTTTTCCGTATGTATAAAAATACACTTAATATAGAAGATGCCCACTGC-AA-GTCGGTATTTGTCATTCTATTGTTAATAGGCGGAAACTCTAATTGATGACAATGTTGTTGTCCCTGTAAATTTAGTC---TAGCAGTC-TAACTTTCCATTATTATAGAATGCAGGACGGGGTCTGACTAAT--------------------CC---------------------CC--------AC---A--C-AAACTCCCTTAAT--TGCAGTGGCGTCGTGTCGGTCTTCCTTTGTGATCTACACAATGCATATTTGACACGCATTGTTTTAGCAATATAAGAAA----CATACGCAGTTTTTTAATGACTCCAAAACGTACATCTACTGTTTAAAAAAATCTACATTATTTTGTTTTATGATTTAAGTATGTTTGAAAACATTTACTC-CGAAAAAGAAATTTATAATATGTATTTTAAAATAATGATTTCGTTAATGCTAAATTGCACAATATATACGTGC---GATAATAATATTTTTAGAATGACAACTAGAAAATAAGTAG-TT-GAGTTTAAATATATGTTTATAATAAATGCATACATACATCAATGAA
gi|4 : GGTACTGTAATCATCATAATACATACTCAATGCTGATTGACTGCAAGGCATTTAACGAAATACAGGC-A----TTTCTTTACTCTGATACGTTTTAAATGTTTCCAGATAAATGTTTTTGTCAATTTTTCCGTATGTATAAAAATACACTTAATATAGAAAATGCCCA-TACAAA-GTCGGTATTTGTCATTCTATTGTTAATAGGCGGAAACACTAATTGGTGACAGTGTTGTTGTCCCTGTAAATTTAGTCAGTTAGCAGTC-GAACTTTCCATTATTATAGAATGCAAGACGTGGTCTGTCTAATCCTCTCTCCCCCCCCCCACCCC---------------------TC--------AC---ACCC-AAACTCCCTTAAT--TGCAGCGGCGTCATGTCGGTCTTCCTTTGTGATCTACACAATGCATATCTGACATGCATTGTTATAACAATATAAGAAA----CATAAGCAATATTTTAATGACTGCAAAACGGTGATATACTGTTTAAAATAATCTACATTATTTTGTTTTA
gi|8 : gacGGTACTGTAATCATCATAATACATACTCAATGCTGATTGACTGCAAGTCATTTAACGAAATACTGGT-A----TTTCTTTACTCTGATACGTTTAAAAGGTTTCGAGATAAATGTTTTTGTAATTTTTTCCGTATGTATAAAAATACGCTTTATATAGAAGATGCCCAC-AC-AAAGTCGGTATTTGTCATTCTATTGTTAAAAGGCGGAAACTCTAATTGGTGGCAGTTTTGTTGTAC-TGTAAATTTAGTC---TAGCAGTC-TAACTTTCCATTATTATAGAATGCAGGACGGGGTCTGACTAAT--------------------CCTCCC-----------------CC--------ACCCAA--CCAAACTCCCTTAAT--TGCAGCGGTATCGTGTCGGTCTTCCTTTGTGATCTACAAAATGCATATTTGACACGCGTTTTCTTAGCAATATAAGAAA----CATAAGCAATATTTTAATGAATGCAAAACGT
gi|10 : acGGTACTGTAATCATCATAATACATACTCAATGCTGATTGACTGCAAGGCATTTAACGAAATACAGCT-A----TTTCTTTACTCTGATACGTTTAAAAGGTTTCCAGATTAATGTTTTTGTCAATTTGTCCGTATGTATAAAAATACACTTAATATAGAAGATGCCCAC-ACAAA-GTCGGTATTTGTCATTCTATTGTTAAAAGGTGGAAACTCTAATTGGTGGCAGTGTTGTTGTCCCTGTAAATTTAGTC---TAGCAGTCTTAACTTGCCATTATTATAGAATGCAGGACGGGGTCTGACTg
gi|2 : acGGTACTGTAATCATCATAATACATACTCAATGCTGATTGACTGCAAGGCATTTAACGAAATACAGCT-ATTTCTTT----ACTCTGATACGTg
gi|6 : gctgcatcatcaatcatcatcagtcatcatcagtcatcatcaatcgttattttatgcagcaacaacagcataatcaatatcagtagcaacagatgtagcagcactataattatcacagtcaactgtattaacagtatcatcgcatagtcaaatcacttacaacacaactgtcattataaatatcatctcaatatcatcatattataaccaccactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacGGTACTGTAATCATCATAATACATACTCAATGCTGATTGACTGCAAGTCATTTAACGAAATACTGGT-ATTTCTTT----ACTCTGATACGTT
gi|5 : cgttattttatgcagcgactacagcataattttttaatcaatatcagtagcaacagatgtagcagcactataattattacagtcaacagtattaacagaatcatcgtaaagtcaaatcactaacaacacaactgtcattataaatatcatctcaatatcatcatattataaccaccacttcggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacGGTACTGTATTCATCATAATACATACTCAATGCTGATTGACAGCAAGGCATTTAACGAAATACAGGC-ATTTCTTT----ACTCTAATACATT
gi|13 : gttattttatgcagcaacaacagcataatttgtttaatcaatatcagtagcaacagatgtagcagcactataattatcaaagtcaactgtattaacagaataatcgcatagtcaaatcactaacaacacaactgtcattataaatatcatctcaatatcatcatattataaacaccactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagacTGATTGACTGCAAGGTATTTAACGAAATACAGGCCA----TTTTTT-ACTCTGCTACGTTTAAAAGGTGTCCAGATAAATGTTTTTGTCAGTTTTTCCTTATGTATAAAAATACACTTAATAg
gi|17 : ----TTT----ACCTTGATACTTCTAAAAGGTTTCCAGATAAATGTTTTCGTCAA-TTTTCCTTATGTATTAAAATACACTTA
gi|7 : attt-AA-GTCGGTATTTGTCATTCTATTGTTTATAGGCGGAAACTCTAATTGGTGACAGTGTTGTTGTCTCTGTAGATTTAGTC---TAGCAGTC-TAACTATCCATTATTATAGAATGCAGGACGGG-TCTGATTAAT--------------------CC---------------------CCTTCCCCCCAC---C--C-CAACTCTCTTAAT--TGCAGCGGCGTCGTGTTGGTCTTCCTTTGTGATCTACAAAATGCATATTTGACACGCGTTGCTTTAGCAATATAAAAAA----CATAAGCAATAGTTTAATGACTGCAAAACGTACAT---CTGTTTAGAATAATCTACATTCTTTTGTTTTATGATTTAAGTATGTTTGAAAACATTTTCTC-CG-AAAAGAAATTTATAATATATATTTTGAAATATTGATTTCGTTAACGCTAAATTGCATAATATGTACATGC---GATAATAACATTTTTAGAACTACAACTAG-AAATAAGTCGTTT-GAATTTAAATATATGTTctgt
gi|3 : a-AA-GTCGGTATTTGTCATTCTATT-TTAATAGGCGGAAACTCTAATCGGTTACAGTGTTGTTGTCCCTGTAAATTTGGTC---TAGCAGTC-TGACTATCCATTATTATAGAATGCAGGACGGGGTCTGACTAAT--------------------CCTTTCTCTCTCTCCCTCTCCCCCC--------GC---C--C-AAACTCCCTTTAA--TGCAGCGGCGTCGTGTCGGTCTTTCTTTGTGAT-------------ATTTGACACGCGTTGTTTTAGCAATAAAAGAAA----CATAAGCAATTTTT-AATGACTGTAAAACGTACATCTACTGTTTAAAATAATCTACATTATT--GTTTTATGATTTAAGTATGTTTGCAAACATTTTCTC-CGAACA-GAAATTGAAAATACATATTTTAAAATATTGATTTCCTTAACGCTAAATTGCATAATATGCACATGC---GATAATAATATTTTTAGAACGACAACTTTAAAGTAAGTCGTTT-GAGTTTAAATATATGTTTATAATAAATGCATACATGCATCAATGAA
gi|18 : caCTTAATATTGCAGCGGCGTCGTGTCGGTATTCCTTTGTGATCTACACAATGCATATTTGACACGTGTTG
gi|9 : aTTAAT--TGCAGCGGTGTCATGTCGGCCTTCCTTTGTGATCTATACAATGCATATTTGACATGCGTTTTTCTAGCAATGTAAAAAAAAAATATAAACTATATTTTAGTGACTACTTAACGTATATCTACTGTTTAAAATAATCTACATTATTTTGTTTTATGATTTAAGTTTGTTTGAAAACG-TTATTCTTGAAAAGGAGTTTTATATTAGATATTTTAAAATATTGATTTTGTTAATGCTAAATTGC---ATATGTACATGCCAAAATAATAATAATTTTAGAACGCCAACTAGAAAAATGGTTGTTT-GAGTTTAAACGTATGTTTATAATAAATTCATAAATGTATAAATGAA
gi|14 : aAACGCTAAACTGCATAATAAGTACATGC---GATAATAAT---TTAAGAACGACAACTTGAAAGTAACTCG-TTTGAGTTTAACTATATGTTTATAATAGATGCATACATACATCAATGAAa
gi|16 : TGCATAATATGTACATGC---GATAATAATATTTTTAGAACGACAACTAGAAAGTAAGTCGTTT-GAGTTTAAATATATG-TTATAATAAATGCATACATATATCAATGAAta
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): TTATTGTATGCAGCAACAACAGCATAATCTGTTTAATCAATATCAGTAGCAATAGATGTAGCAGCACTATAATTATCACAGTCAACTGTATTAACAGAATCGCATAGTCAAATCACTAACAACACAACTGTCATTATAAATATCATCTCAATATCATCATATTATAACCACAACTCCG
Unaligned ( gi|12 ): TATACAGCAACAACAGAATATTCGGTTTAATCAATATCAGTAGCAACAGATGTAACAGCACTATAATTATCACAGTCAACTGTATTAACAGAATCATCGCAAAGTCAAATCACTAACAACTCAACTGTCATTAT
Unaligned ( gi|15 ): TTGTAGTATCAGCAACAGTCGCAGCGGAAGCAGTATTAATAATATGCTAGTATAAGCAATAGATGTAGAAACATGAGAACTAGTAGCAGCAGATGTATTACAAAACCGTAT
Unaligned ( gi|19 ): ATTTTATGCAGCAACAACAGAATAATCGATTTAATCAATATCAGTAG
Alignments
lowQualScore : 11111111111111111111111111111111111111111
lowQualScore : 44444444 1 111 11111111111111111111111111111111111111111 11111 1111 1 111
lowQualScore : 5 33333333 1 0 111 6 55555555555555555555555555555555555555555 88888 77 0 4444 3 5 0 2 0 2 99 1 111 9 99
lowQualScore : . ........ . . ... . ......................................... ..... .. . .... . . . . . . .. . ... . ..
lowQualScore : 0 77777777 7 0 777 7 88888888888888888888888888888888888888888 00000 99 7 2222 5 0 8 0 0 5 00 0 777 3 22
consensus : GGTACTGTAATCATCATAATACATACTCAATGCTGATTGACTGCAAGGCATTTAACGAAATACAGGC-ATTTCTTTCTTTACTCTGATACGTTTAAAAGGTTTCCAGATAAATGTTTTTGTCAATTTTTCCGTATGTATAAAAATACACTTAATATAGAAGATGCCCAC-ACAAAGTCGGTATTTGTCATTCTATTGTTAATAGGCGGAAACTCTAATTGGTGACAGTGTTGTTGTCCCTGTAAATTTAGTC---TAGCAGTC-TAACTTTCCATTATTATAGAATGCAGGACGGGGTCTGACTAATCCT-----------------CT---CCC---------------CAC----CCAAACTCCCTTAAT--TGCAGCGGCGTCGTGTCGGTCTTCCTTTGTGATCTACACAATGCATATTTGACACGCGTTGTTTTAGCAATATAAGAAA----CATAAGCAATATTTTAATGACTGCAAAACGTACATCTACTGTTTAAAATAATCTACATTATTTTGTTTTATGATTTAAGTATGTTTGAAAACATT-TTCTCCGAAAAGGAAATTTATAATATATATTTTAAAATATTGATTTCGTTAACGCTAAATTGCATAATATGTACATGC---GATAATAATATTTTTAGAACGACAACTAGAAAGTAA--GTCGTTTGAGTTTAAATATATGTTTATAATAAATGCATACATACATCAATGAA
Reference ( family-5289 ) : GGTACTGTAATCATCATAATACATACTCAATGCTGATTGACTGCAAGGCATTTAACGAAATACAGGC-ATTTCTTTCTTTACTCTGATACGTTTAAAAGGTTTCCAGATAAATGTTTTTGTCAATTTTTCCGTATGTATAAAAATACACTTAATATAGAAGATGCCCAC-ACAAAGTCGGTATTTGTCATTCTATTGTTAATAGGCGGAAACTCTAATTGGTGACAGTGTTGTTGTCCCTGTAAATTTAGTC---TAGCAGTC-TAACTTTCCATTATTATAGAATGCAGGACGGGGTCTGACTAATCCT-----------------C----CCC---------------CAC----NCAAACTCCCTTAAT--TGCAGCGGCGTCGTGTCGGTCTTCCTTTGTGATCTACACAATGCATATTTGACACGCGTTGTTTTAGCAATATAAGAAA----CATAAGCAATATTTTAATGACTGCAAAACGTACATCTACTGTTTAAAATAATCTACATTATTTTGTTTTATGATTTAAGTATGTTTGAAAACGTT-TTCTCCGAAAAGGAAATTTATAATANATATTTTAAAATATTGATTTCGTTAACGCTAAATTGCATAATATGTACATGC---GATAATAATATTTTTAGAACGACAACTAGAAAGTAA--GTCGTTTGAGTTTAAATATATGTTTATAATAAATGCATACATGCATCAATGAA
gi|1 : GGTACTGTAATCATCATTATACATACTCAATGCTGATTGACTGCAAGGCATTTAACAAAATACAGGC-ATTT--------ACTCGGATACGTTCAAAAGGTTTCTAGATAAATGTTTT-GTCAATTTTTCCGTATGTATAAAAATACACTTAATATAGAAGATGCCCACTGCAA-GTCGGTATTTGTCATTCTATTGTTAATAGGCGGAAACTCTAATTGATGACAATGTTGTTGTCCCTGTAAATTTAGTC---TAGCAGTC-TAACTTTCCATTATTATAGAATGCAGGACGGGGTCTGACTAATCC-------------------------C---------------CAC----ACAAACTCCCTTAAT--TGCAGTGGCGTCGTGTCGGTCTTCCTTTGTGATCTACACAATGCATATTTGACACGCATTGTTTTAGCAATATAAGAAA----CATACGCAGTTTTTTAATGACTCCAAAACGTACATCTACTGTTTAAAAAAATCTACATTATTTTGTTTTATGATTTAAGTATGTTTGAAAACATT-TACTCCGAAAAAGAAATTTATAATATGTATTTTAAAATAATGATTTCGTTAATGCTAAATTGCACAATATATACGTGC---GATAATAATATTTTTAGAATGACAACTAGAAAATAA--GTAG-TTGAGTTTAAATATATGTTTATAATAAATGCATACATACATCAATGAA
gi|10 : GGTACTGTAATCATCATAATACATACTCAATGCTGATTGACTGCAAGGCATTTAACGAAATACAGCT-ATTTC----TTTACTCTGATACGTTTAAAAGGTTTCCAGATTAATGTTTTTGTCAATTTGTCCGTATGTATAAAAATACACTTAATATAGAAGATGCCCAC-ACAAAGTCGGTATTTGTCATTCTATTGTTAAAAGGTGGAAACTCTAATTGGTGGCAGTGTTGTTGTCCCTGTAAATTTAGTC---TAGCAGTCTTAACTTGCCATTATTATAGAATGCAGGACGGGGTCTGACT
gi|13 : acTGATTGACTGCAAGGTATTTAACGAAATACAGGCCATTT-----TTTACTCTGCTACGTTTAAAAGGTGTCCAGATAAATGTTTTTGTCAGTTTTTCCTTATGTATAAAAATACACTTAATAg
gi|14 : AACGCTAAACTGCATAATAAGTACATGC---GATAATAAT---TTAAGAACGACAACTTGAAAGTAA--CTCGTTTGAGTTTAACTATATGTTTATAATAGATGCATACATACATCAATGAA
gi|16 : TGCATAATATGTACATGC---GATAATAATATTTTTAGAACGACAACTAGAAAGTAA--GTCGTTTGAGTTTAAATATATG-TTATAATAAATGCATACATATATCAATGAAta
gi|17 : TTTTTTACCTTGATACTTCTAAAAGGTTTCCAGATAAATGTTTTCGTCAA-TTTTCCTTATGTATTAAAATACACTTAta
gi|18 : aCTTAATATTGCAGCGGCGTCGTGTCGGTATTCCTTTGTGATCTACACAATGCATATTTGACACGTGTTGctgt
gi|2 : aGGTACTGTAATCATCATAATACATACTCAATGCTGATTGACTGCAAGGCATTTAACGAAATACAG-----CTATTTCTTTACTCTGATACGT
gi|3 : gctgcatcatcaatcatcatcagtcatcatcagtcatcatcaatcgttattttatgcagcaacaacagcataatcaatatcagtagcaacagatgtagcagcactataattatcacagtcaactgtattaacagtatcatcgcatagtcaaatcacttacaacacaactgtcattataaatatcatctcaatatcatcatattataaccaccactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacCAAAGTCGGTATTTGTCATTCTATT-TTAATAGGCGGAAACTCTAATCGGTTACAGTGTTGTTGTCCCTGTAAATTTGGTC---TAGCAGTC-TGACTATCCATTATTATAGAATGCAGGACGGGGTCTGACTAATCCTTTCTCTCTCTCCCTCTCC----CCC---------------CGC----CCAAACTCCCTTTAA--TGCAGCGGCGTCGTGTCGGTCTTTCTTTGTGAT-------------ATTTGACACGCGTTGTTTTAGCAATAAAAGAAA----CATAAGCAAT-TTTTAATGACTGTAAAACGTACATCTACTGTTTAAAATAATCTACATTATT--GTTTTATGATTTAAGTATGTTTGCAAACATT-TTCTCCGAACAG-AAATTGAAAATACATATTTTAAAATATTGATTTCCTTAACGCTAAATTGCATAATATGCACATGC---GATAATAATATTTTTAGAACGACAACTTTAAAGTAA--GTCGTTTGAGTTTAAATATATGTTTATAATAAATGCATACATGCATCAATGAA
gi|4 : GGTACTGTAATCATCATAATACATACTCAATGCTGATTGACTGCAAGGCATTTAACGAAATACAGGC-ATTTC----TTTACTCTGATACGTTTTAAATGTTTCCAGATAAATGTTTTTGTCAATTTTTCCGTATGTATAAAAATACACTTAATATAGAAAATGCCCAT-ACAAAGTCGGTATTTGTCATTCTATTGTTAATAGGCGGAAACACTAATTGGTGACAGTGTTGTTGTCCCTGTAAATTTAGTCAGTTAGCAGTC-GAACTTTCCATTATTATAGAATGCAAGACGTGGTCTGTCTAATCCT-----------------CTCT-CCCCCCCCCCACCCCTCACAC----CCAAACTCCCTTAAT--TGCAGCGGCGTCATGTCGGTCTTCCTTTGTGATCTACACAATGCATATCTGACATGCATTGTTATAACAATATAAGAAA----CATAAGCAATATTTTAATGACTGCAAAACGGTGATATACTGTTTAAAATAATCTACATTATTTTGTTTTA
gi|5 : gacGGTACTGTATTCATCATAATACATACTCAATGCTGATTGACAGCAAGGCATTTAACGAAATACAGGC-A----TTTCTTTACTCTAATACATT
gi|6 : gttattttatgcagcaacaacagcataatttgtttaatcaatatcagtagcaacagatgtagcagcactataattatcaaagtcaactgtattaacagaataatcgcatagtcaaatcactaacaacacaactgtcattataaatatcatctcaatatcatcatattataaacaccactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagacGGTACTGTAATCATCATAATACATACTCAATGCTGATTGACTGCAAGTCATTTAACGAAATACTGGT-A----TTTCTTTACTCTGATACGTTg
gi|7 : cgttattttatgcagcgactacagcataattttttaatcaatatcagtagcaacagatgtagcagcactataattattacagtcaacagtattaacagaatcatcgtaaagtcaaatcactaacaacacaactgtcattataaatatcatctcaatatcatcatattataaccaccacttcggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacAAAGTCGGTATTTGTCATTCTATTGTTTATAGGCGGAAACTCTAATTGGTGACAGTGTTGTTGTCTCTGTAGATTTAGTC---TAGCAGTC-TAACTATCCATTATTATAGAATGCAGGACGGG-TCTGATTAATCCC-----------------CTTCCCCC---------------CAC----CCCAACTCTCTTAAT--TGCAGCGGCGTCGTGTTGGTCTTCCTTTGTGATCTACAAAATGCATATTTGACACGCGTTGCTTTAGCAATATAAAAAA----CATAAGCAATAGTTTAATGACTGCAAAACGTACAT---CTGTTTAGAATAATCTACATTCTTTTGTTTTATGATTTAAGTATGTTTGAAAACATT-TTCTCCGAAAA-GAAATTTATAATATATATTTTGAAATATTGATTTCGTTAACGCTAAATTGCATAATATGTACATGC---GATAATAACATTTTTAGAACTACAACTAGAAA-TAA--GTCGTTTGAATTTAAATATATGTT
gi|8 : GGTACTGTAATCATCATAATACATACTCAATGCTGATTGACTGCAAGTCATTTAACGAAATACTGGT-ATTTC----TTTACTCTGATACGTTTAAAAGGTTTCGAGATAAATGTTTTTGTAATTTTTTCCGTATGTATAAAAATACGCTTTATATAGAAGATGCCCAC-ACAAAGTCGGTATTTGTCATTCTATTGTTAAAAGGCGGAAACTCTAATTGGTGGCAGTTTTGTTGT-ACTGTAAATTTAGTC---TAGCAGTC-TAACTTTCCATTATTATAGAATGCAGGACGGGGTCTGACTAATCCT-----------------C----CCC---------------CACCCAACCAAACTCCCTTAAT--TGCAGCGGTATCGTGTCGGTCTTCCTTTGTGATCTACAAAATGCATATTTGACACGCGTTTTCTTAGCAATATAAGAAA----CATAAGCAATATTTTAATGAATGCAAAACGT
gi|9 : acTTAAT--TGCAGCGGTGTCATGTCGGCCTTCCTTTGTGATCTATACAATGCATATTTGACATGCGTTTTTCTAGCAATGTAAAAAAAAAATATAAACTATATTTTAGTGACTACTTAACGTATATCTACTGTTTAAAATAATCTACATTATTTTGTTTTATGATTTAAGTTTGTTTGAAAACGTTATTCT-TGAAAAGGAGTTTTATATTAGATATTTTAAAATATTGATTTTGTTAATGCTAAATTGC---ATATGTACATGCCAAAATAATAATAATTTTAGAACGCCAACTAGAAA--AATGGTTGTTTGAGTTTAAACGTATGTTTATAATAAATTCATAAATGTATAAATGAAg
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TTATTGTATGCAGCAACAACAGCATAATCTGTTTAATCAATATCAGTAGCAATAGATGTAGCAGCACTATAATTATCACAGTCAACTGTATTAACAGAATCGCATAGTCAAATCACTAACAACACAACTGTCATTATAAATATCATCTCAATATCATCATATTATAACCACAACTCCG
Unaligned ( gi|12 ): TATACAGCAACAACAGAATATTCGGTTTAATCAATATCAGTAGCAACAGATGTAACAGCACTATAATTATCACAGTCAACTGTATTAACAGAATCATCGCAAAGTCAAATCACTAACAACTCAACTGTCATTAT
Unaligned ( gi|15 ): TTGTAGTATCAGCAACAGTCGCAGCGGAAGCAGTATTAATAATATGCTAGTATAAGCAATAGATGTAGAAACATGAGAACTAGTAGCAGCAGATGTATTACAAAACCGTAT
Unaligned ( gi|19 ): ATTTTATGCAGCAACAACAGAATAATCGATTTAATCAATATCAGTAG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111
lowQualScore : 33333333 1 111 0000000000000000000000000000000000000000000000000 1111 1 111
lowQualScore : 5 55555555 1 0 111 6 4444444444444444444444444444444444444444444444444 77 0 4444 3 5 0 0 2 99 0 111 9 99
lowQualScore : . ........ . . ... . ................................................. .. . .... . . . . . .. . ... . ..
lowQualScore : 0 00000000 7 0 777 7 6666666666666666666666666666666666666666666666666 99 7 2222 5 0 8 0 5 00 8 777 3 22
consensus : GGTACTGTAATCATCATAATACATACTCAATGCTGATTGACTGCAAGGCATTTAACGAAATACAGGC-ATTTCTTTCTTTACTCTGATACGTTTAAAAGGTTTCCAGATAAATGTTTTTGTCAATTTTTCCGTATGTATAAAAATACACTTAATATAGAAGATGCCCAC-ACAAAGTCGGTATTTGTCATTCTATTGTTAATAGGCGGAAACTCTAATTGGTGACAGTGTTGTTGTCCCTGTAAATTTAGTC---TAGCAGTC-TAACTTTCCATTATTATAGAATGCAGGACGGGGTCTGACTAATCCT----------------CT---CCCC-----------------AC----CCAAACTCCCTTAAT--TGCAGCGGCGTCGTGTCGGTCTTCCTTTGTGATCTACACAATGCATATTTGACACGCGTTGTTTTAGCAATATAAGAAA----CATAAGCAATATTTTAATGACTGCAAAACGTACATCTACTGTTTAAAATAATCTACATTATTTTGTTTTATGATTTAAGTATGTTTGAAAACATT-TTCTCCGAAAAGGAAATTTATAATATATATTTTAAAATATTGATTTCGTTAACGCTAAATTGCATAATATGTACATGC---GATAATAATATTTTTAGAACGACAACTAGAAAGTAA--GTCGTTTGAGTTTAAATATATGTTTATAATAAATGCATACATACATCAATGAA
Reference ( family-5289 ) : GGTACTGTAATCATCATAATACATACTCAATGCTGATTGACTGCAAGGCATTTAACGAAATACAGGC-ATTTCTTTCTTTACTCTGATACGTTTAAAAGGTTTCCAGATAAATGTTTTTGTCAATTTTTCCGTATGTATAAAAATACACTTAATATAGAAGATGCCCAC-ACAAAGTCGGTATTTGTCATTCTATTGTTAATAGGCGGAAACTCTAATTGGTGACAGTGTTGTTGTCCCTGTAAATTTAGTC---TAGCAGTC-TAACTTTCCATTATTATAGAATGCAGGACGGGGTCTGACTAATCCT----------------CT---CCCC-----------------AC----CCAAACTCCCTTAAT--TGCAGCGGCGTCGTGTCGGTCTTCCTTTGTGATCTACACAATGCATATTTGACACGCGTTGTTTTAGCAATATAAGAAA----CATAAGCAATATTTTAATGACTGCAAAACGTACATCTACTGTTTAAAATAATCTACATTATTTTGTTTTATGATTTAAGTATGTTTGAAAACATT-TTCTCCGAAAAGGAAATTTATAATATATATTTTAAAATATTGATTTCGTTAACGCTAAATTGCATAATATGTACATGC---GATAATAATATTTTTAGAACGACAACTAGAAAGTAA--GTCGTTTGAGTTTAAATATATGTTTATAATAAATGCATACATACATCAATGAA
gi|1 : GGTACTGTAATCATCATTATACATACTCAATGCTGATTGACTGCAAGGCATTTAACAAAATACAGGC-ATTT--------ACTCGGATACGTTCAAAAGGTTTCTAGATAAATGTTTT-GTCAATTTTTCCGTATGTATAAAAATACACTTAATATAGAAGATGCCCACTGCAA-GTCGGTATTTGTCATTCTATTGTTAATAGGCGGAAACTCTAATTGATGACAATGTTGTTGTCCCTGTAAATTTAGTC---TAGCAGTC-TAACTTTCCATTATTATAGAATGCAGGACGGGGTCTGACTAATCC------------------------CC-----------------AC----ACAAACTCCCTTAAT--TGCAGTGGCGTCGTGTCGGTCTTCCTTTGTGATCTACACAATGCATATTTGACACGCATTGTTTTAGCAATATAAGAAA----CATACGCAGTTTTTTAATGACTCCAAAACGTACATCTACTGTTTAAAAAAATCTACATTATTTTGTTTTATGATTTAAGTATGTTTGAAAACATT-TACTCCGAAAAAGAAATTTATAATATGTATTTTAAAATAATGATTTCGTTAATGCTAAATTGCACAATATATACGTGC---GATAATAATATTTTTAGAATGACAACTAGAAAATAA--GTAG-TTGAGTTTAAATATATGTTTATAATAAATGCATACATACATCAATGAA
gi|10 : GGTACTGTAATCATCATAATACATACTCAATGCTGATTGACTGCAAGGCATTTAACGAAATACAGCT-ATTTC----TTTACTCTGATACGTTTAAAAGGTTTCCAGATTAATGTTTTTGTCAATTTGTCCGTATGTATAAAAATACACTTAATATAGAAGATGCCCAC-ACAAAGTCGGTATTTGTCATTCTATTGTTAAAAGGTGGAAACTCTAATTGGTGGCAGTGTTGTTGTCCCTGTAAATTTAGTC---TAGCAGTCTTAACTTGCCATTATTATAGAATGCAGGACGGGGTCTGACT
gi|13 : acTGATTGACTGCAAGGTATTTAACGAAATACAGGCCATTT-----TTTACTCTGCTACGTTTAAAAGGTGTCCAGATAAATGTTTTTGTCAGTTTTTCCTTATGTATAAAAATACACTTAATAg
gi|14 : AACGCTAAACTGCATAATAAGTACATGC---GATAATAAT---TTAAGAACGACAACTTGAAAGTAA--CTCGTTTGAGTTTAACTATATGTTTATAATAGATGCATACATACATCAATGAA
gi|16 : TGCATAATATGTACATGC---GATAATAATATTTTTAGAACGACAACTAGAAAGTAA--GTCGTTTGAGTTTAAATATATG-TTATAATAAATGCATACATATATCAATGAAta
gi|17 : TTTTTTACCTTGATACTTCTAAAAGGTTTCCAGATAAATGTTTTCGTCAA-TTTTCCTTATGTATTAAAATACACTTAta
gi|18 : aCTTAATATTGCAGCGGCGTCGTGTCGGTATTCCTTTGTGATCTACACAATGCATATTTGACACGTGTTGctgt
gi|2 : aGGTACTGTAATCATCATAATACATACTCAATGCTGATTGACTGCAAGGCATTTAACGAAATACAG-----CTATTTCTTTACTCTGATACGT
gi|3 : gctgcatcatcaatcatcatcagtcatcatcagtcatcatcaatcgttattttatgcagcaacaacagcataatcaatatcagtagcaacagatgtagcagcactataattatcacagtcaactgtattaacagtatcatcgcatagtcaaatcacttacaacacaactgtcattataaatatcatctcaatatcatcatattataaccaccactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacCAAAGTCGGTATTTGTCATTCTATT-TTAATAGGCGGAAACTCTAATCGGTTACAGTGTTGTTGTCCCTGTAAATTTGGTC---TAGCAGTC-TGACTATCCATTATTATAGAATGCAGGACGGGGTCTGACTAATCCTTTCTCTCTCTCCCTCTCC---CCCC-----------------GC----CCAAACTCCCTTTAA--TGCAGCGGCGTCGTGTCGGTCTTTCTTTGTGAT-------------ATTTGACACGCGTTGTTTTAGCAATAAAAGAAA----CATAAGCAAT-TTTTAATGACTGTAAAACGTACATCTACTGTTTAAAATAATCTACATTATT--GTTTTATGATTTAAGTATGTTTGCAAACATT-TTCTCCGAACAG-AAATTGAAAATACATATTTTAAAATATTGATTTCCTTAACGCTAAATTGCATAATATGCACATGC---GATAATAATATTTTTAGAACGACAACTTTAAAGTAA--GTCGTTTGAGTTTAAATATATGTTTATAATAAATGCATACATGCATCAATGAA
gi|4 : GGTACTGTAATCATCATAATACATACTCAATGCTGATTGACTGCAAGGCATTTAACGAAATACAGGC-ATTTCTTT----ACTCTGATACGTTTTAAATGTTTCCAGATAAATGTTTTTGTCAATTTTTCCGTATGTATAAAAATACACTTAATATAGAAAATGCCCAT-ACAAAGTCGGTATTTGTCATTCTATTGTTAATAGGCGGAAACACTAATTGGTGACAGTGTTGTTGTCCCTGTAAATTTAGTCAGTTAGCAGTC-GAACTTTCCATTATTATAGAATGCAAGACGTGGTCTGTCTAATCCT----------------CT---CTCCCCCCCCCCACCCCTCACAC----CCAAACTCCCTTAAT--TGCAGCGGCGTCATGTCGGTCTTCCTTTGTGATCTACACAATGCATATCTGACATGCATTGTTATAACAATATAAGAAA----CATAAGCAATATTTTAATGACTGCAAAACGGTGATATACTGTTTAAAATAATCTACATTATTTTGTTTTA
gi|5 : gacGGTACTGTATTCATCATAATACATACTCAATGCTGATTGACAGCAAGGCATTTAACGAAATACAGGC-A----TTTCTTTACTCTAATACATT
gi|6 : gttattttatgcagcaacaacagcataatttgtttaatcaatatcagtagcaacagatgtagcagcactataattatcaaagtcaactgtattaacagaataatcgcatagtcaaatcactaacaacacaactgtcattataaatatcatctcaatatcatcatattataaacaccactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagacGGTACTGTAATCATCATAATACATACTCAATGCTGATTGACTGCAAGTCATTTAACGAAATACTGGT-A----TTTCTTTACTCTGATACGTTg
gi|7 : cgttattttatgcagcgactacagcataattttttaatcaatatcagtagcaacagatgtagcagcactataattattacagtcaacagtattaacagaatcatcgtaaagtcaaatcactaacaacacaactgtcattataaatatcatctcaatatcatcatattataaccaccacttcggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacAAAGTCGGTATTTGTCATTCTATTGTTTATAGGCGGAAACTCTAATTGGTGACAGTGTTGTTGTCTCTGTAGATTTAGTC---TAGCAGTC-TAACTATCCATTATTATAGAATGCAGGACGGG-TCTGATTAATCCC----------------CTTCCCCCC-----------------AC----CCCAACTCTCTTAAT--TGCAGCGGCGTCGTGTTGGTCTTCCTTTGTGATCTACAAAATGCATATTTGACACGCGTTGCTTTAGCAATATAAAAAA----CATAAGCAATAGTTTAATGACTGCAAAACGTACAT---CTGTTTAGAATAATCTACATTCTTTTGTTTTATGATTTAAGTATGTTTGAAAACATT-TTCTCCGAAAA-GAAATTTATAATATATATTTTGAAATATTGATTTCGTTAACGCTAAATTGCATAATATGTACATGC---GATAATAACATTTTTAGAACTACAACTAGAAA-TAA--GTCGTTTGAATTTAAATATATGTT
gi|8 : GGTACTGTAATCATCATAATACATACTCAATGCTGATTGACTGCAAGTCATTTAACGAAATACTGGT-ATTTC----TTTACTCTGATACGTTTAAAAGGTTTCGAGATAAATGTTTTTGTAATTTTTTCCGTATGTATAAAAATACGCTTTATATAGAAGATGCCCAC-ACAAAGTCGGTATTTGTCATTCTATTGTTAAAAGGCGGAAACTCTAATTGGTGGCAGTTTTGTTGT-ACTGTAAATTTAGTC---TAGCAGTC-TAACTTTCCATTATTATAGAATGCAGGACGGGGTCTGACTAATCCT----------------C----CCCC-----------------ACCCAACCAAACTCCCTTAAT--TGCAGCGGTATCGTGTCGGTCTTCCTTTGTGATCTACAAAATGCATATTTGACACGCGTTTTCTTAGCAATATAAGAAA----CATAAGCAATATTTTAATGAATGCAAAACGT
gi|9 : acTTAAT--TGCAGCGGTGTCATGTCGGCCTTCCTTTGTGATCTATACAATGCATATTTGACATGCGTTTTTCTAGCAATGTAAAAAAAAAATATAAACTATATTTTAGTGACTACTTAACGTATATCTACTGTTTAAAATAATCTACATTATTTTGTTTTATGATTTAAGTTTGTTTGAAAACGTTATTCT-TGAAAAGGAGTTTTATATTAGATATTTTAAAATATTGATTTTGTTAATGCTAAATTGC---ATATGTACATGCCAAAATAATAATAATTTTAGAACGCCAACTAGAAA--AATGGTTGTTTGAGTTTAAACGTATGTTTATAATAAATTCATAAATGTATAAATGAAg
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TTATTGTATGCAGCAACAACAGCATAATCTGTTTAATCAATATCAGTAGCAATAGATGTAGCAGCACTATAATTATCACAGTCAACTGTATTAACAGAATCGCATAGTCAAATCACTAACAACACAACTGTCATTATAAATATCATCTCAATATCATCATATTATAACCACAACTCCG
Unaligned ( gi|12 ): TATACAGCAACAACAGAATATTCGGTTTAATCAATATCAGTAGCAACAGATGTAACAGCACTATAATTATCACAGTCAACTGTATTAACAGAATCATCGCAAAGTCAAATCACTAACAACTCAACTGTCATTAT
Unaligned ( gi|15 ): TTGTAGTATCAGCAACAGTCGCAGCGGAAGCAGTATTAATAATATGCTAGTATAAGCAATAGATGTAGAAACATGAGAACTAGTAGCAGCAGATGTATTACAAAACCGTAT
Unaligned ( gi|19 ): ATTTTATGCAGCAACAACAGAATAATCGATTTAATCAATATCAGTAG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111
lowQualScore : 33333333 1 111 0000000000000000000000000000000000000000000000000 1111 1 111
lowQualScore : 5 55555555 1 0 111 6 4444444444444444444444444444444444444444444444444 77 0 4444 3 5 0 0 2 99 0 111 9 99
lowQualScore : . ........ . . ... . ................................................. .. . .... . . . . . .. . ... . ..
lowQualScore : 0 00000000 7 0 777 7 6666666666666666666666666666666666666666666666666 99 7 2222 5 0 8 0 5 00 8 777 3 22
consensus : GGTACTGTAATCATCATAATACATACTCAATGCTGATTGACTGCAAGGCATTTAACGAAATACAGGC-ATTTCTTTCTTTACTCTGATACGTTTAAAAGGTTTCCAGATAAATGTTTTTGTCAATTTTTCCGTATGTATAAAAATACACTTAATATAGAAGATGCCCAC-ACAAAGTCGGTATTTGTCATTCTATTGTTAATAGGCGGAAACTCTAATTGGTGACAGTGTTGTTGTCCCTGTAAATTTAGTC---TAGCAGTC-TAACTTTCCATTATTATAGAATGCAGGACGGGGTCTGACTAATCCT----------------CT---CCCC-----------------AC----CCAAACTCCCTTAAT--TGCAGCGGCGTCGTGTCGGTCTTCCTTTGTGATCTACACAATGCATATTTGACACGCGTTGTTTTAGCAATATAAGAAA----CATAAGCAATATTTTAATGACTGCAAAACGTACATCTACTGTTTAAAATAATCTACATTATTTTGTTTTATGATTTAAGTATGTTTGAAAACATT-TTCTCCGAAAAGGAAATTTATAATATATATTTTAAAATATTGATTTCGTTAACGCTAAATTGCATAATATGTACATGC---GATAATAATATTTTTAGAACGACAACTAGAAAGTAA--GTCGTTTGAGTTTAAATATATGTTTATAATAAATGCATACATACATCAATGAA
Reference ( family-5289 ) : GGTACTGTAATCATCATAATACATACTCAATGCTGATTGACTGCAAGGCATTTAACGAAATACAGGC-ATTTCTTTCTTTACTCTGATACGTTTAAAAGGTTTCCAGATAAATGTTTTTGTCAATTTTTCCGTATGTATAAAAATACACTTAATATAGAAGATGCCCAC-ACAAAGTCGGTATTTGTCATTCTATTGTTAATAGGCGGAAACTCTAATTGGTGACAGTGTTGTTGTCCCTGTAAATTTAGTC---TAGCAGTC-TAACTTTCCATTATTATAGAATGCAGGACGGGGTCTGACTAATCCT----------------CT---CCCC-----------------AC----CCAAACTCCCTTAAT--TGCAGCGGCGTCGTGTCGGTCTTCCTTTGTGATCTACACAATGCATATTTGACACGCGTTGTTTTAGCAATATAAGAAA----CATAAGCAATATTTTAATGACTGCAAAACGTACATCTACTGTTTAAAATAATCTACATTATTTTGTTTTATGATTTAAGTATGTTTGAAAACATT-TTCTCCGAAAAGGAAATTTATAATATATATTTTAAAATATTGATTTCGTTAACGCTAAATTGCATAATATGTACATGC---GATAATAATATTTTTAGAACGACAACTAGAAAGTAA--GTCGTTTGAGTTTAAATATATGTTTATAATAAATGCATACATACATCAATGAA
gi|1 : GGTACTGTAATCATCATTATACATACTCAATGCTGATTGACTGCAAGGCATTTAACAAAATACAGGC-ATTT--------ACTCGGATACGTTCAAAAGGTTTCTAGATAAATGTTTT-GTCAATTTTTCCGTATGTATAAAAATACACTTAATATAGAAGATGCCCACTGCAA-GTCGGTATTTGTCATTCTATTGTTAATAGGCGGAAACTCTAATTGATGACAATGTTGTTGTCCCTGTAAATTTAGTC---TAGCAGTC-TAACTTTCCATTATTATAGAATGCAGGACGGGGTCTGACTAATCC------------------------CC-----------------AC----ACAAACTCCCTTAAT--TGCAGTGGCGTCGTGTCGGTCTTCCTTTGTGATCTACACAATGCATATTTGACACGCATTGTTTTAGCAATATAAGAAA----CATACGCAGTTTTTTAATGACTCCAAAACGTACATCTACTGTTTAAAAAAATCTACATTATTTTGTTTTATGATTTAAGTATGTTTGAAAACATT-TACTCCGAAAAAGAAATTTATAATATGTATTTTAAAATAATGATTTCGTTAATGCTAAATTGCACAATATATACGTGC---GATAATAATATTTTTAGAATGACAACTAGAAAATAA--GTAG-TTGAGTTTAAATATATGTTTATAATAAATGCATACATACATCAATGAA
gi|10 : GGTACTGTAATCATCATAATACATACTCAATGCTGATTGACTGCAAGGCATTTAACGAAATACAGCT-ATTTC----TTTACTCTGATACGTTTAAAAGGTTTCCAGATTAATGTTTTTGTCAATTTGTCCGTATGTATAAAAATACACTTAATATAGAAGATGCCCAC-ACAAAGTCGGTATTTGTCATTCTATTGTTAAAAGGTGGAAACTCTAATTGGTGGCAGTGTTGTTGTCCCTGTAAATTTAGTC---TAGCAGTCTTAACTTGCCATTATTATAGAATGCAGGACGGGGTCTGACT
gi|13 : acTGATTGACTGCAAGGTATTTAACGAAATACAGGCCATTT-----TTTACTCTGCTACGTTTAAAAGGTGTCCAGATAAATGTTTTTGTCAGTTTTTCCTTATGTATAAAAATACACTTAATAg
gi|14 : AACGCTAAACTGCATAATAAGTACATGC---GATAATAAT---TTAAGAACGACAACTTGAAAGTAA--CTCGTTTGAGTTTAACTATATGTTTATAATAGATGCATACATACATCAATGAA
gi|16 : TGCATAATATGTACATGC---GATAATAATATTTTTAGAACGACAACTAGAAAGTAA--GTCGTTTGAGTTTAAATATATG-TTATAATAAATGCATACATATATCAATGAAta
gi|17 : TTTTTTACCTTGATACTTCTAAAAGGTTTCCAGATAAATGTTTTCGTCAA-TTTTCCTTATGTATTAAAATACACTTAta
gi|18 : aCTTAATATTGCAGCGGCGTCGTGTCGGTATTCCTTTGTGATCTACACAATGCATATTTGACACGTGTTGctgt
gi|2 : aGGTACTGTAATCATCATAATACATACTCAATGCTGATTGACTGCAAGGCATTTAACGAAATACAG-----CTATTTCTTTACTCTGATACGT
gi|3 : gctgcatcatcaatcatcatcagtcatcatcagtcatcatcaatcgttattttatgcagcaacaacagcataatcaatatcagtagcaacagatgtagcagcactataattatcacagtcaactgtattaacagtatcatcgcatagtcaaatcacttacaacacaactgtcattataaatatcatctcaatatcatcatattataaccaccactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacCAAAGTCGGTATTTGTCATTCTATT-TTAATAGGCGGAAACTCTAATCGGTTACAGTGTTGTTGTCCCTGTAAATTTGGTC---TAGCAGTC-TGACTATCCATTATTATAGAATGCAGGACGGGGTCTGACTAATCCTTTCTCTCTCTCCCTCTCC---CCCC-----------------GC----CCAAACTCCCTTTAA--TGCAGCGGCGTCGTGTCGGTCTTTCTTTGTGAT-------------ATTTGACACGCGTTGTTTTAGCAATAAAAGAAA----CATAAGCAAT-TTTTAATGACTGTAAAACGTACATCTACTGTTTAAAATAATCTACATTATT--GTTTTATGATTTAAGTATGTTTGCAAACATT-TTCTCCGAACAG-AAATTGAAAATACATATTTTAAAATATTGATTTCCTTAACGCTAAATTGCATAATATGCACATGC---GATAATAATATTTTTAGAACGACAACTTTAAAGTAA--GTCGTTTGAGTTTAAATATATGTTTATAATAAATGCATACATGCATCAATGAA
gi|4 : GGTACTGTAATCATCATAATACATACTCAATGCTGATTGACTGCAAGGCATTTAACGAAATACAGGC-ATTTCTTT----ACTCTGATACGTTTTAAATGTTTCCAGATAAATGTTTTTGTCAATTTTTCCGTATGTATAAAAATACACTTAATATAGAAAATGCCCAT-ACAAAGTCGGTATTTGTCATTCTATTGTTAATAGGCGGAAACACTAATTGGTGACAGTGTTGTTGTCCCTGTAAATTTAGTCAGTTAGCAGTC-GAACTTTCCATTATTATAGAATGCAAGACGTGGTCTGTCTAATCCT----------------CT---CTCCCCCCCCCCACCCCTCACAC----CCAAACTCCCTTAAT--TGCAGCGGCGTCATGTCGGTCTTCCTTTGTGATCTACACAATGCATATCTGACATGCATTGTTATAACAATATAAGAAA----CATAAGCAATATTTTAATGACTGCAAAACGGTGATATACTGTTTAAAATAATCTACATTATTTTGTTTTA
gi|5 : gacGGTACTGTATTCATCATAATACATACTCAATGCTGATTGACAGCAAGGCATTTAACGAAATACAGGC-A----TTTCTTTACTCTAATACATT
gi|6 : gttattttatgcagcaacaacagcataatttgtttaatcaatatcagtagcaacagatgtagcagcactataattatcaaagtcaactgtattaacagaataatcgcatagtcaaatcactaacaacacaactgtcattataaatatcatctcaatatcatcatattataaacaccactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagacGGTACTGTAATCATCATAATACATACTCAATGCTGATTGACTGCAAGTCATTTAACGAAATACTGGT-A----TTTCTTTACTCTGATACGTTg
gi|7 : cgttattttatgcagcgactacagcataattttttaatcaatatcagtagcaacagatgtagcagcactataattattacagtcaacagtattaacagaatcatcgtaaagtcaaatcactaacaacacaactgtcattataaatatcatctcaatatcatcatattataaccaccacttcggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacAAAGTCGGTATTTGTCATTCTATTGTTTATAGGCGGAAACTCTAATTGGTGACAGTGTTGTTGTCTCTGTAGATTTAGTC---TAGCAGTC-TAACTATCCATTATTATAGAATGCAGGACGGG-TCTGATTAATCCC----------------CTTCCCCCC-----------------AC----CCCAACTCTCTTAAT--TGCAGCGGCGTCGTGTTGGTCTTCCTTTGTGATCTACAAAATGCATATTTGACACGCGTTGCTTTAGCAATATAAAAAA----CATAAGCAATAGTTTAATGACTGCAAAACGTACAT---CTGTTTAGAATAATCTACATTCTTTTGTTTTATGATTTAAGTATGTTTGAAAACATT-TTCTCCGAAAA-GAAATTTATAATATATATTTTGAAATATTGATTTCGTTAACGCTAAATTGCATAATATGTACATGC---GATAATAACATTTTTAGAACTACAACTAGAAA-TAA--GTCGTTTGAATTTAAATATATGTT
gi|8 : GGTACTGTAATCATCATAATACATACTCAATGCTGATTGACTGCAAGTCATTTAACGAAATACTGGT-ATTTC----TTTACTCTGATACGTTTAAAAGGTTTCGAGATAAATGTTTTTGTAATTTTTTCCGTATGTATAAAAATACGCTTTATATAGAAGATGCCCAC-ACAAAGTCGGTATTTGTCATTCTATTGTTAAAAGGCGGAAACTCTAATTGGTGGCAGTTTTGTTGT-ACTGTAAATTTAGTC---TAGCAGTC-TAACTTTCCATTATTATAGAATGCAGGACGGGGTCTGACTAATCCT----------------C----CCCC-----------------ACCCAACCAAACTCCCTTAAT--TGCAGCGGTATCGTGTCGGTCTTCCTTTGTGATCTACAAAATGCATATTTGACACGCGTTTTCTTAGCAATATAAGAAA----CATAAGCAATATTTTAATGAATGCAAAACGT
gi|9 : acTTAAT--TGCAGCGGTGTCATGTCGGCCTTCCTTTGTGATCTATACAATGCATATTTGACATGCGTTTTTCTAGCAATGTAAAAAAAAAATATAAACTATATTTTAGTGACTACTTAACGTATATCTACTGTTTAAAATAATCTACATTATTTTGTTTTATGATTTAAGTTTGTTTGAAAACGTTATTCT-TGAAAAGGAGTTTTATATTAGATATTTTAAAATATTGATTTTGTTAATGCTAAATTGC---ATATGTACATGCCAAAATAATAATAATTTTAGAACGCCAACTAGAAA--AATGGTTGTTTGAGTTTAAACGTATGTTTATAATAAATTCATAAATGTATAAATGAAg
blockSeqs : C CTATTTC T . AGT T TCTCTCCCCCCCCCCACCCCTCACAC AT AAAA A C A C GG CAA G TG
blockSeqs : . TTTCTTT T . . . TTTCTCTCTCTCCCTCTCCCCCCGC . . A A . C G . G .
blockSeqs : . TTTC C . . . CCTTCCCCCCAC . . A C . . G . G .
blockSeqs : . TTTC T . . TCCCCCACCCAA . . A . . . .
blockSeqs : . TTTC T . . . . . . . .
blockSeqs : . TTTC .
blockSeqs : . TTT
blockSeqCons : TTTC**** TCTTCCCCCCCCCCCCCAC******************************
originalCons : GGTACTGTAATCATCATAATACATACTCAATGCTGATTGACTGCAAGGCATTTAACGAAATACAGGC-ATTTCTTTCTTTACTCTGATACGTTTAAAAGGTTTCCAGATAAATGTTTTTGTCAATTTTTCCGTATGTATAAAAATACACTTAATATAGAAGATGCCCAC-ACAAAGTCGGTATTTGTCATTCTATTGTTAATAGGCGGAAACTCTAATTGGTGACAGTGTTGTTGTCCCTGTAAATTTAGTC---TAGCAGTC-TAACTTTCCATTATTATAGAATGCAGGACGGGGTCTGACTAATCCT----------------CT---CCCC-----------------AC----CCAAACTCCCTTAAT--TGCAGCGGCGTCGTGTCGGTCTTCCTTTGTGATCTACACAATGCATATTTGACACGCGTTGTTTTAGCAATATAAGAAA----CATAAGCAATATTTTAATGACTGCAAAACGTACATCTACTGTTTAAAATAATCTACATTATTTTGTTTTATGATTTAAGTATGTTTGAAAACATT-TTCTCCGAAAAGGAAATTTATAATATATATTTTAAAATATTGATTTCGTTAACGCTAAATTGCATAATATGTACATGC---GATAATAATATTTTTAGAACGACAACTAGAAAGTAA--GTCGTTTGAGTTTAAATATATGTTTATAATAAATGCATACATACATCAATGAA
finalCons : GGTACTGTAATCATCATAATACATACTCAATGCTGATTGACTGCAAGGCATTTAACGAAATACAGGC-ATTTC----TTTACTCTGATACGTTTAAAAGGTTTCCAGATAAATGTTTTTGTCAATTTTTCCGTATGTATAAAAATACACTTAATATAGAAGATGCCCAC-ACAAAGTCGGTATTTGTCATTCTATTGTTAATAGGCGGAAACTCTAATTGGTGACAGTGTTGTTGTCCCTGTAAATTTAGTC---TAGCAGTC-TAACTTTCCATTATTATAGAATGCAGGACGGGGTCTGACTAATCCTCTTCCCCCCCCCCCCCAC------------------------------CCAAACTCCCTTAAT--TGCAGCGGCGTCGTGTCGGTCTTCCTTTGTGATCTACACAATGCATATTTGACACGCGTTGTTTTAGCAATATAAGAAA----CATAAGCAATATTTTAATGACTGCAAAACGTACATCTACTGTTTAAAATAATCTACATTATTTTGTTTTATGATTTAAGTATGTTTGAAAACATT-TTCTCCGAAAAGGAAATTTATAATATATATTTTAAAATATTGATTTCGTTAACGCTAAATTGCATAATATGTACATGC---GATAATAATATTTTTAGAACGACAACTAGAAAGTAA--GTCGTTTGAGTTTAAATATATGTTTATAATAAATGCATACATACATCAATGAA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TTATTGTATGCAGCAACAACAGCATAATCTGTTTAATCAATATCAGTAGCAATAGATGTAGCAGCACTATAATTATCACAGTCAACTGTATTAACAGAATCGCATAGTCAAATCACTAACAACACAACTGTCATTATAAATATCATCTCAATATCATCATATTATAACCACAACTCCG
Unaligned ( gi|12 ): TATACAGCAACAACAGAATATTCGGTTTAATCAATATCAGTAGCAACAGATGTAACAGCACTATAATTATCACAGTCAACTGTATTAACAGAATCATCGCAAAGTCAAATCACTAACAACTCAACTGTCATTAT
Unaligned ( gi|15 ): TTGTAGTATCAGCAACAGTCGCAGCGGAAGCAGTATTAATAATATGCTAGTATAAGCAATAGATGTAGAAACATGAGAACTAGTAGCAGCAGATGTATTACAAAACCGTAT
Unaligned ( gi|19 ): ATTTTATGCAGCAACAACAGAATAATCGATTTAATCAATATCAGTAG
Alignments
lowQualScore : 1 111 55555555555555555555555555555 1111 1 111
lowQualScore : 5 2 1 0 111 6 66666666666666666666666666666 77 0 4444 3 5 0 0 2 99 0 111 9 99
lowQualScore : . . . . ... . ............................. .. . .... . . . . . .. . ... . ..
lowQualScore : 0 9 7 0 777 7 66666666666666666666666666666 99 7 2222 5 0 8 0 5 00 8 777 3 22
consensus : GGTACTGTAATCATCATAATACATACTCAATGCTGATTGACTGCAAGGCATTTAACGAAATACAGG-CATTTCTTTACTCTGATACGTTTAAAAGGTTTCCAGATAAATGTTTTTGTCAATTTTTCCGTATGTATAAAAATACACTTAATATAGAAGATGCCCAC-ACAAAGTCGGTATTTGTCATTCTATTGTTAATAGGCGGAAACTCTAATTGGTGACAGTGTTGTTGTCCCTGTAAATTTAGTC---TAGCAGTC-TAACTTTCCATTATTATAGAATGCAGGACGGGGTCTGACTAATCCT------CT-TCCCCCCCCCC-CC-----CACCCAAACTCCCTTAAT--TGCAGCGGCGTCGTGTCGGTCTTCCTTTGTGATCTACACAATGCATATTTGACACGCGTTGTTTTAGCAATATAAGAAA----CATAAGCAATATTTTAATGACTGCAAAACGTACATCTACTGTTTAAAATAATCTACATTATTTTGTTTTATGATTTAAGTATGTTTGAAAACATT-TTCTCCGAAAAGGAAATTTATAATATATATTTTAAAATATTGATTTCGTTAACGCTAAATTGCATAATATGTACATGC---GATAATAATATTTTTAGAACGACAACTAGAAAGTAA--GTCGTTTGAGTTTAAATATATGTTTATAATAAATGCATACATACATCAATGAA
Reference ( family-5289 ) : GGTACTGTAATCATCATAATACATACTCAATGCTGATTGACTGCAAGGCATTTAACGAAATACAGG-CATTTCTTTACTCTGATACGTTTAAAAGGTTTCCAGATAAATGTTTTTGTCAATTTTTCCGTATGTATAAAAATACACTTAATATAGAAGATGCCCAC-ACAAAGTCGGTATTTGTCATTCTATTGTTAATAGGCGGAAACTCTAATTGGTGACAGTGTTGTTGTCCCTGTAAATTTAGTC---TAGCAGTC-TAACTTTCCATTATTATAGAATGCAGGACGGGGTCTGACTAATCCT------CT-TCCCCCCCCCC-CC-----CACCCAAACTCCCTTAAT--TGCAGCGGCGTCGTGTCGGTCTTCCTTTGTGATCTACACAATGCATATTTGACACGCGTTGTTTTAGCAATATAAGAAA----CATAAGCAATATTTTAATGACTGCAAAACGTACATCTACTGTTTAAAATAATCTACATTATTTTGTTTTATGATTTAAGTATGTTTGAAAACATT-TTCTCCGAAAAGGAAATTTATAATATATATTTTAAAATATTGATTTCGTTAACGCTAAATTGCATAATATGTACATGC---GATAATAATATTTTTAGAACGACAACTAGAAAGTAA--GTCGTTTGAGTTTAAATATATGTTTATAATAAATGCATACATACATCAATGAA
gi|1 : GGTACTGTAATCATCATTATACATACTCAATGCTGATTGACTGCAAGGCATTTAACAAAATACAGG-CATTT----ACTCGGATACGTTCAAAAGGTTTCTAGATAAATGTTTT-GTCAATTTTTCCGTATGTATAAAAATACACTTAATATAGAAGATGCCCACTGCAA-GTCGGTATTTGTCATTCTATTGTTAATAGGCGGAAACTCTAATTGATGACAATGTTGTTGTCCCTGTAAATTTAGTC---TAGCAGTC-TAACTTTCCATTATTATAGAATGCAGGACGGGGTCTGACTAATCC-----------------------C-----CACACAAACTCCCTTAAT--TGCAGTGGCGTCGTGTCGGTCTTCCTTTGTGATCTACACAATGCATATTTGACACGCATTGTTTTAGCAATATAAGAAA----CATACGCAGTTTTTTAATGACTCCAAAACGTACATCTACTGTTTAAAAAAATCTACATTATTTTGTTTTATGATTTAAGTATGTTTGAAAACATT-TACTCCGAAAAAGAAATTTATAATATGTATTTTAAAATAATGATTTCGTTAATGCTAAATTGCACAATATATACGTGC---GATAATAATATTTTTAGAATGACAACTAGAAAATAA--GTAG-TTGAGTTTAAATATATGTTTATAATAAATGCATACATACATCAATGAA
gi|10 : GGTACTGTAATCATCATAATACATACTCAATGCTGATTGACTGCAAGGCATTTAACGAAATACAGC-TATTTCTTTACTCTGATACGTTTAAAAGGTTTCCAGATTAATGTTTTTGTCAATTTGTCCGTATGTATAAAAATACACTTAATATAGAAGATGCCCAC-ACAAAGTCGGTATTTGTCATTCTATTGTTAAAAGGTGGAAACTCTAATTGGTGGCAGTGTTGTTGTCCCTGTAAATTTAGTC---TAGCAGTCTTAACTTGCCATTATTATAGAATGCAGGACGGGGTCTGACT
gi|13 : acTGATTGACTGCAAGGTATTTAACGAAATACAGGCCATTT-TTTACTCTGCTACGTTTAAAAGGTGTCCAGATAAATGTTTTTGTCAGTTTTTCCTTATGTATAAAAATACACTTAATAg
gi|14 : AACGCTAAACTGCATAATAAGTACATGC---GATAATAAT---TTAAGAACGACAACTTGAAAGTAA--CTCGTTTGAGTTTAACTATATGTTTATAATAGATGCATACATACATCAATGAA
gi|16 : TGCATAATATGTACATGC---GATAATAATATTTTTAGAACGACAACTAGAAAGTAA--GTCGTTTGAGTTTAAATATATG-TTATAATAAATGCATACATATATCAATGAAta
gi|17 : TTTTTTACCTTGATACTTCTAAAAGGTTTCCAGATAAATGTTTTCGTCAA-TTTTCCTTATGTATTAAAATACACTTAta
gi|18 : aCTTAATATTGCAGCGGCGTCGTGTCGGTATTCCTTTGTGATCTACACAATGCATATTTGACACGTGTTGctgt
gi|2 : aGGTACTGTAATCATCATAATACATACTCAATGCTGATTGACTGCAAGGCATTTAACGAAATACAGC-TATTTCTTTACTCTGATACGT
gi|3 : gctgcatcatcaatcatcatcagtcatcatcagtcatcatcaatcgttattttatgcagcaacaacagcataatcaatatcagtagcaacagatgtagcagcactataattatcacagtcaactgtattaacagtatcatcgcatagtcaaatcacttacaacacaactgtcattataaatatcatctcaatatcatcatattataaccaccactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacCAAAGTCGGTATTTGTCATTCTATT-TTAATAGGCGGAAACTCTAATCGGTTACAGTGTTGTTGTCCCTGTAAATTTGGTC---TAGCAGTC-TGACTATCCATTATTATAGAATGCAGGACGGGGTCTGACTAATCCTTTCTCTCT-CTCCCTCTCCC-CC-----CGCCCAAACTCCCTTTAA--TGCAGCGGCGTCGTGTCGGTCTTTCTTTGTGAT-------------ATTTGACACGCGTTGTTTTAGCAATAAAAGAAA----CATAAGCAAT-TTTTAATGACTGTAAAACGTACATCTACTGTTTAAAATAATCTACATTATT--GTTTTATGATTTAAGTATGTTTGCAAACATT-TTCTCCGAACAG-AAATTGAAAATACATATTTTAAAATATTGATTTCCTTAACGCTAAATTGCATAATATGCACATGC---GATAATAATATTTTTAGAACGACAACTTTAAAGTAA--GTCGTTTGAGTTTAAATATATGTTTATAATAAATGCATACATGCATCAATGAA
gi|4 : GGTACTGTAATCATCATAATACATACTCAATGCTGATTGACTGCAAGGCATTTAACGAAATACAGG-CATTTCTTTACTCTGATACGTTTTAAATGTTTCCAGATAAATGTTTTTGTCAATTTTTCCGTATGTATAAAAATACACTTAATATAGAAAATGCCCAT-ACAAAGTCGGTATTTGTCATTCTATTGTTAATAGGCGGAAACACTAATTGGTGACAGTGTTGTTGTCCCTGTAAATTTAGTCAGTTAGCAGTC-GAACTTTCCATTATTATAGAATGCAAGACGTGGTCTGTCTAATCCT------CTCTCCCCCCCCCCACCCCTCACACCCAAACTCCCTTAAT--TGCAGCGGCGTCATGTCGGTCTTCCTTTGTGATCTACACAATGCATATCTGACATGCATTGTTATAACAATATAAGAAA----CATAAGCAATATTTTAATGACTGCAAAACGGTGATATACTGTTTAAAATAATCTACATTATTTTGTTTTA
gi|5 : gacGGTACTGTATTCATCATAATACATACTCAATGCTGATTGACAGCAAGGCATTTAACGAAATACAGG-CATTTCTTTACTCTAATACATT
gi|6 : gttattttatgcagcaacaacagcataatttgtttaatcaatatcagtagcaacagatgtagcagcactataattatcaaagtcaactgtattaacagaataatcgcatagtcaaatcactaacaacacaactgtcattataaatatcatctcaatatcatcatattataaacaccactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagacGGTACTGTAATCATCATAATACATACTCAATGCTGATTGACTGCAAGTCATTTAACGAAATACTGG-TATTTCTTTACTCTGATACGTTg
gi|7 : cgttattttatgcagcgactacagcataattttttaatcaatatcagtagcaacagatgtagcagcactataattattacagtcaacagtattaacagaatcatcgtaaagtcaaatcactaacaacacaactgtcattataaatatcatctcaatatcatcatattataaccaccacttcggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacAAAGTCGGTATTTGTCATTCTATTGTTTATAGGCGGAAACTCTAATTGGTGACAGTGTTGTTGTCTCTGTAGATTTAGTC---TAGCAGTC-TAACTATCCATTATTATAGAATGCAGGACGGG-TCTGATTAATCCC------CT-TCCCCCCACCC-C------------AACTCTCTTAAT--TGCAGCGGCGTCGTGTTGGTCTTCCTTTGTGATCTACAAAATGCATATTTGACACGCGTTGCTTTAGCAATATAAAAAA----CATAAGCAATAGTTTAATGACTGCAAAACGTACAT---CTGTTTAGAATAATCTACATTCTTTTGTTTTATGATTTAAGTATGTTTGAAAACATT-TTCTCCGAAAA-GAAATTTATAATATATATTTTGAAATATTGATTTCGTTAACGCTAAATTGCATAATATGTACATGC---GATAATAACATTTTTAGAACTACAACTAGAAA-TAA--GTCGTTTGAATTTAAATATATGTT
gi|8 : GGTACTGTAATCATCATAATACATACTCAATGCTGATTGACTGCAAGTCATTTAACGAAATACTGG-TATTTCTTTACTCTGATACGTTTAAAAGGTTTCGAGATAAATGTTTTTGTAATTTTTTCCGTATGTATAAAAATACGCTTTATATAGAAGATGCCCAC-ACAAAGTCGGTATTTGTCATTCTATTGTTAAAAGGCGGAAACTCTAATTGGTGGCAGTTTTGTTGT-ACTGTAAATTTAGTC---TAGCAGTC-TAACTTTCCATTATTATAGAATGCAGGACGGGGTCTGACTAATCCT--------------CCCCCA-CC-----CAACCAAACTCCCTTAAT--TGCAGCGGTATCGTGTCGGTCTTCCTTTGTGATCTACAAAATGCATATTTGACACGCGTTTTCTTAGCAATATAAGAAA----CATAAGCAATATTTTAATGAATGCAAAACGT
gi|9 : acTTAAT--TGCAGCGGTGTCATGTCGGCCTTCCTTTGTGATCTATACAATGCATATTTGACATGCGTTTTTCTAGCAATGTAAAAAAAAAATATAAACTATATTTTAGTGACTACTTAACGTATATCTACTGTTTAAAATAATCTACATTATTTTGTTTTATGATTTAAGTTTGTTTGAAAACGTTATTCT-TGAAAAGGAGTTTTATATTAGATATTTTAAAATATTGATTTTGTTAATGCTAAATTGC---ATATGTACATGCCAAAATAATAATAATTTTAGAACGCCAACTAGAAA--AATGGTTGTTTGAGTTTAAACGTATGTTTATAATAAATTCATAAATGTATAAATGAAg
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TTATTGTATGCAGCAACAACAGCATAATCTGTTTAATCAATATCAGTAGCAATAGATGTAGCAGCACTATAATTATCACAGTCAACTGTATTAACAGAATCGCATAGTCAAATCACTAACAACACAACTGTCATTATAAATATCATCTCAATATCATCATATTATAACCACAACTCCG
Unaligned ( gi|12 ): TATACAGCAACAACAGAATATTCGGTTTAATCAATATCAGTAGCAACAGATGTAACAGCACTATAATTATCACAGTCAACTGTATTAACAGAATCATCGCAAAGTCAAATCACTAACAACTCAACTGTCATTAT
Unaligned ( gi|15 ): TTGTAGTATCAGCAACAGTCGCAGCGGAAGCAGTATTAATAATATGCTAGTATAAGCAATAGATGTAGAAACATGAGAACTAGTAGCAGCAGATGTATTACAAAACCGTAT
Unaligned ( gi|19 ): ATTTTATGCAGCAACAACAGAATAATCGATTTAATCAATATCAGTAG