lowQualScore : 111111111111111111111111111111
lowQualScore : 1 222 33333333 11 22 1 66666666666666666666 22 11111111111111 1111111111111111 11 000000000000000000000000000000 22222222222222222222222222222222222222 4444444444444444444444444444444444444444444444444444444444444444444444444 111 1 33333333 333333 2222222222 1 111 5555555555 333 777 1 1 1 1 1 55
lowQualScore : 6 6 6 5 111 55555555 88 4 00 3 66666666666666666666 3 11 0 3 88888888888 4 8 7 33333333333333 22 0000000000000000 66 2 666666 4 333 33 444 88 5 3 444444444444444444444444444444 2 2 2 2 888 2 33 88888888888888888888888888888888888888 333 333 7777777777777777777777777777777777777777777777777777777777777777777777777 5555 33 33 555 2 66 666 0 7 2 3 4 4 8 8 5 44444444 4 2 7 2 3 3 1 0 888888 5555555555 7 4 6 2 6 3 4 7 6 888 666 6 6666666666 8 1 555 000 5 5 5 5 7 55 6
lowQualScore : . . . . ... ........ .. . .. . .................... . .. . . ........... . . . .............. .. ................ .. . ...... . ... .. ... .. . . .............................. . . . . ... . .. ...................................... ... ... ......................................................................... .... .. .. ... . .. ... . . . . . . . . . ........ . . . . . . . . ...... .......... . . . . . . . . . ... ... . .......... . . ... ... . . . . . .. .
lowQualScore : 0 0 0 0 000 55555555 55 7 77 3 33333333333333333333 7 77 8 6 44444444444 1 8 9 22222222222222 88 7777777777777777 88 0 444444 7 888 11 111 22 9 7 444444444444444444444444444444 6 4 5 7 888 4 22 44444444444444444444444444444444444444 000 999 3333333333333333333333333333333333333333333333333333333333333333333333333 3333 44 99 000 9 88 888 8 4 9 3 3 3 3 0 6 66666666 6 8 5 8 2 2 0 7 333333 0000000000 0 7 7 3 7 7 0 3 7 777 000 7 7777777777 3 0 000 000 0 0 0 0 0 00 0
consensus : GGGGCGAGTGTGCTTTAGTAGTAAACTATAGGTACTTATTCAGATGTTGCATCCAATCTATGGTCATTTTCACACGATTCACACACTTTTGAAAAGTGTAATCCCATTGGCTTTAGTCAAGGATCAAAGACAAAGTATTGATTTCAGAAATAGACATGAAAGCATTTATTTTCCCTACATAANTTGA-GA-AAAATAAC----ACGNTATTT-------ATANATCAC-AGTATATACA----A------ATATCTTTATTCAGCAATTAAACATACA------------A-CA--TGTTTATAGCCTA--------C-------ACAAAT--A-CATGAAAATATGAATATA------GTGAGA--AC-ATGAA---CAATTA-AACCTATCATTAGTTATACCTAT--A------A--CATC-AACC---------TAGATCAGATTTAC-CAAG-AA-GCACAAA---AT-T--TATT---T----------------------TG----------T---TTTTT---AA--------------------T--------------------------CT------------------------GAAAGCA----AAATAAA--TAAA--T---T-TCGC--TAAGTTAAGGACAGTACGTTTTGCTATAGATGTCATTAGCATATCGAATTTG-TTTAAGTTTGGCCATCGGCAATAGTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCTGGTAAGAGCTAT-TTTAAACTTTTTCTCCATATCG-----CT-ATTTAAGTAAGACTCTAAGTTAAAAGTGTGCTTGAAACGACAGTAAGATGATAGTCTATTCGAATTA------TTTATTTCTGCGTACAAAC-TTTGGTGATATATGTCTANGATTCTGTGTTTTATGTGTTCAAAGCTTNTTTGTTCNATATCATACTGATAGAGCCAAATACGTGTCATACCTAAGGTTCGNNATATTGATTTGATTTGAAA--C-C-G-TTTGATCCATTATAAGAATTATTTTTATCGGCGTCATTTATGTTTTTTTTGTGTTTCATAAAGTTTCTTAACAATATGTTAAGATGGAACAATTATATCATATTAATGGATTAGAATGAAACAAAGGCTGTTTACATGTGTACCTAGTTTATTCAGTGTTTAGATTAAATGATGACGTTATGAAAGTAG--ACGTTTCTCAAA
Reference ( gi|1 ) : GGGGCGAGTGTGCTTTAGTGGTAAACTATAAGTACTTATTCAGATGTTGCATCCAATCTATGGTCATTTTCACACGATCCACACACTTTTGAAAAGTGTAATCCCATTGGCTTTAGTCAAGGATCAAAGACAAAGTATTGATTTCATAAATAGACATGAAAGCATTTATTTTCCCTACATAATTTGA-GA-AAAATAAC----ACACTATTT-------ATAGATCACCAGTATATACA----A------ATGTCTTTATTTAGCAATTAAGCATACA------------A-CA--TGTTTATAGCCTA--------C-------ACAAAT--A-CATGAAAATATGAATATA------GCGAGA--AA-ATGAA---CAATTG-AACTTATCATTAGTTATACCTAT--A------A--CACC-AACTTTATAT--ATAGATCAGATTTAC-CAAG-AA-GCACAAA---AT-T--TATT---T----------------------TG----------T---TTTTT---AA--------------------T--------------------------CT------------------------GAAAGCA----AAATAAA--TAAA--T---T-TCGC--TAAGTTATGGACAGTACGTTTTGCTATAGATATCATTAGCATATGGAATTTG-TTTAAGTTTAGTCATCGGCAATAGTTATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCTGGTAAGAGCTAT-TTTAAACTTTTTCTCCATATCA-----CA-ATCTAAGTAGGACTCTAAATTAAAAGTGCACTTGAAACGACAGTAAGATGATAGTCTATTCAAGTTA------TTTATTTCTGAATACACAC-TTTGGTTATATATGTCTAAGATTCTGTATTTTATGTGTGCAAAGCTTGTTTGTTCTATATCATACTGATAGAGCCAAATGTCTGTCATACCTAAGGTTTGTAATATTGATTTGATTTGAAAAGC-CAAGTTTGATCCATTATAAGAATTATTATTATCAGCATCATTT---TTTTT---GTCTTTCATAAATTTTCTTAACAATATGTTAAGATGGAAGAATTATATCATATTAATGGATTAGAATGAAACAAATGCTGTTTACTTGTGTACCTAGTTTATTCAGTGTTTAGATTAAATGATGACGTTATGAAAGTAGACACATTTCTCAAA
gi|2 : GGGGCGAGTGTGCTTTAGTAGTAAACTATAGGTACTTATTCAGATGTTGCATCCAATCTATGGTCATTTTCACACGATTCACACACTTTTGAAAAGTGTAATCCCATTGGCTTTAGTCAAGGATCAAAGACAAAGTATTGATTTCAGAAATAGACATGAAAGCATTTATTTTCCCTACATAATTTGA-GA-AAAATAAC----ACAATGTTT-------ATAGATCACCAGTATATACA----A------ATGTCTTTATTCAGCAATTAAGCATACA------------A-TA--TGTTTATAGCCTA--------C-------ACAAAT--A-CATGAAAATATGAATATA------GTGGGA--AC-ATGAA---CAATTG-AACTTATCATTAGTTATACCCAT--A------A--CACC-AACTTTATAT--ATAGATCAGATTAAC-CAAG-AA-GCACAAA---AT-T--TATT---T----------------------TAT---------T---TTTTT---AA--------------------T--------------------------CT------------------------GAAAGCA----AAATAAA--TAAA--T---T-TCGC--TAAGTTAAGGACAGTACATTTTGCTATAGATGTCATTA-CATATGGAATTTG-TTTAAGTTT
gi|19 : AAATAG---TGAAA--------TTTCCC---ATAAATTG--GA-TAAATGTC----AAATCA----------AAAAATCA----TA-ATACA----G------ATATCTTTGTTCAGCAATAAAACATACA------------------TATTTATAGCCTA--------C-------ACAAAT--A-CATGGAAATATGAATATA------GTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttgccgctttctttggtgagattttcggaagataacctagtaagagctattttaaactttttcttcatatcacaatctaagtaggactctaagttaaaagtgcacttgaaacgacagtaagatgatagtctattcaagttatttatttctgcataccaactttggttatatatgtctaagattctgtattttatgtgtgcaaagcttgtttgttctatatcatactgatagagccaaatatctgtcatacctaaggtttgttatattgatttgatttgatccattataagaattattattatcgacatcatttttttttttgtgtttcataaagtttcttaacaatatgttaagatggaacaattatatcatattaatggattagaatgaaacaaaggctgtttacatgtgtacctagtttattcagtgtttagattaaatgatgacgttatgaaagtagacgtttctcaaa
gi|6 : aattgacgggaCATAGCCTGAAGATAGAATAACCGTAACGGTATTTGTATAAAATATATGAC-AG---ATACA----A------ATATATTTATTCAGTAATTAAACAT-------------------------TATAGCCTA--------T-------ACAAAT--A-CATGAAGGTATGGAGATA------GTGAG---AA-TTAAA---CAATTT-AACATATTACAAGTTTTACCTAT--C------A--AATC-AACC---------TAAATCAGATTTAT-CAAA-AA-GCGTGAA---TT-C--CATT---T----------------------TC----------T---Tnnnnnnnnnnatatttatagcctacacaaatacatggaaatatgaatatagtgagaatatgaaca
gi|20 : TATATATATGTTA------ATATCTTTAATCATCAATTAAAC-TATA------------A-CA--GGTTTATAGCCTG--------C-------ACTAAT--A-CATAAAAGTATGAATATACATATTGTGAGA--CT-ATAAA---CAGATA-AACCCATTATTCGTTGTACTTAT--C------A--AATC-CACTTCA---------ACCAGATTTAC-Catcatatactttttacctttttattgataaagaatgcgttattgttatgtttcttaatctgaaatcaaactgtttctaaattaaggacagtacgtattgttatagatgttaaagcattgccttaaacttggccatcagcaatagatatgtttaaaacacgtctgtgttaattctttattaaagggacaaaacaagtaataaatggtattcgttttcaataaaatgcatgttacaaaattgacatatcccaccatttctttaaatattttgtcaaatcgtcatcatgttttat
gi|15 : ttagaatgcaaagatatctatgtgatatatatacataTATGTACA----T------ATACATTTATTCAGCAAT-AAACATACA------------G-CACCTGTATATGGCTTAATTTAATAT-------ACACAT--A-TATGAAAATATGAAGACA------GTAAG----A-ATAAC---CAATCA-AAg
gi|3 : ACATACA----A------ATATCTTTATTCAGCAATTAAACATACA------------A-TA--TGTTTATAGCCTA--------C-------ACAAATA-A-CATGAAAATATGACTATA------GTGAGA--AC-ATGAA---CAATTG-AACCTACCATAAGTTATA-CTAT--A------T--CATC-AACC---------TAGATCAGATTTAC-CAAGTAA-G-ACAAATGTATCT--TACT---TTTTCGGTATATAAATTAGGTTATG----------T---TTATT---AA--------------------T--------------------------CT------------------------GAAAGCA----AAATAAA--TACA--T---T-TTGCT-TAAGTAAAGAACAGTACGTTTTGCTAAAGTTGTC-TTAGCATATCGAATTCG-CTTTAGTTTGGCCATCAGCAGCAGTAATGtcagatttcatagctgggaaacattttttttaattcttgtttttcaaaataaaaaaagaatttacacctggtataattatattaggtcatgtttctaaaattgaagcaaaacaaaattatataacactaaattcaagacagtatatttttctcttgatatcattagcgtat
gi|18 : acATATACA----A------AAATCTTTGTTCAACAATTAAACAAAGA------------A-CA--TGTT----------------------------AAT--A-CATTTAAATATAATTATA------GTGAGT--AT-ATAAA---CAATCA-AACACATTATTAGTTATACATATCGA------ATCCACCTAAC--------------TCAGATTTAC-TAAG-AA-ACACAAA---AT-T--TATT---T----------------------TA----------T---TTtttaaaatattttgtcttaattctttaaagaatggaccaacaagtaacaagtgatacttattttcaaaaaaaaaatatgttacaaaaattacctatcctttcttttctttgaatagtttcacatcattcgctttctatggcgagaatataggaagtaaatatcaatcaggtaagagttattataaactgtgtttatatatcgatatttaagttagactctaacttaaaagtgtgcttgaaacgacagtaagatgaaagtctattcgaattatttgtttttgtgtaacaagtttggtgatatatgtctatgatttgtttttatgtgttcaaaacttatttgttccatatcatactgatagagcaaaatatgtgtcatatctaaggttttggatattgatttgatttgaaaatcccggtttgatccattataagaattatttttatcggtatcat
gi|8 : atacaaATACT----A------ATATCTTTATTCAGCAATTAAACATACA--------------CA--TGTTTATAGCCTA--------T-------ACAAAT--AACATGAAAATATGAACAAA------GTGAGA--AC-ATGAA---CAATTA-AACCTATCATAAGTTATACCTAT--A------A--AATC-AACC---------TAGATCAGATTTAC-CAAG-AA-GCACAAA---AT-T--TA-T---T----------------------TGAT--------T---TTTTT---AA--------------------TCTAAACATTAGGTTATGTTTCTTAATCT------------------------GAAAGCA----AAATAAA--TAAA--T---T-TCGC--CCAAT-----AAAGTACGTTTTGCTATATTTTTCATTAGCGTATTGAATTTG-TTTAAGTTTGGTCATCGGCAGTAGTAATGatgtttgtatttccttttttttgttattatcatgcattatatatta
gi|14 : gcgagaacgcaacgaatttaccgacggtatatacaaatacaaATACA----A------ATATCTTTATTCAGCAATTAAACATACA------------A-TA--TGTTTATAGCCTG--------C-------ACAAATA-A-CATGAAAATATTAATATA------GCGAGA--AC-ATGAA---CAGTTA-AACATATGATAAGTTATACCTAT--A------A--CA-T-AACC---------TAGATCAGAGTTAC-CAAG-AA-GCACAAA---AT-G--TA-T---T----------------------TGAA--------T---TTTTT---AA--------------------tttaaaatatttttgtcttaattctttatagaagggacaaacaagtaagac
gi|13 : tgatatacaaATATA----A------ATATCTTTATTCAGCAACTAAACATACA------------G-CA--TGTTTATAGCCCA--------C-------ACAAAT--A-CATGAAAATATGAATATA------ATGAGA--AC-ATGAA---CAATTT-AACCTATCATTAGTGATACCTAT--G------A--TATT-AGCATT--------------GATTTAC-CAAG-AA-TTACGAA---CT-T--TATT---T----------------------TA----------T---TTTTaatctatacataaggttatgtttcttaatctgaaggcaacataaatatataaacagtataggtgttgaaaacataacgtttcattaattagaattcagttgtttt
gi|4 : ATACA----A------CTATGTTTATTCAGCAATTAAACATACATATGTATCCTGTATCC--TGTTTATAGCCTA--------C-------ACACAT--A-CTTGAAAATATGAATATA------GTGAGA--AT-ATGAA---CAATTT-AACCTAGTA----TCATACCTAT--C------A--AATC-AACCTGA---------ATCAGATTTAC-CAAG-AA-GCACAAG---AT-T--TATT---T----------------------TA----------T---TTgtttgtatttacatttttatctttacatatggtggtgtttcttaatctgaaagcaaaataaataaatttcgctaagttaaagaaagtacgttttgcttaagattccaatagcatatcggatttgt
gi|5 : atacaaATACA----ATTATCTATATCTATATTCGGCAATTAAAAATACA------------A-CA--TGTTTATATCC-----------------------------ATGAAAATATAAATAAA------GTGAGA--AT-ATGAA---CAATTA-AACCTATCATTAGTTATA-CTAA--A------AT-CATC-AACC---------TAGATAAGATTTAC-AAAG-AA-GCACAAC---AT-T--TATT---T----------------------GA----------T---TTTTatatttgtatttacttttaattttttcagatctatactttagttaatgtttcttgatctgaaatcaagctaaattaatttcgcgctgaatttaagacagtacgtttgctatagatgtcattagcatatcgaatttgtttaggtttggccatcggttaaagttgtgttttaaatgtttttttgtcttaattatttattaaagggacaatcacgtaggaaattatattcattttcaataaattcgtgctacaaaattaacatgtccttttatttctttgaatattttcgtattaatcgtattctatggcgaaattatgggaggataatctaaatttggtaagagctatttgattttttttctccatataaatatccatatgtaaacaaaactcaaagttcaaaatgtacttgaaatgacagtag
gi|10 : ATACA----A------ATATCTCTGTTCTGCAATTAAATATATA------------A-CA--TCTTTATAACCTA--------CACTAGGAACAAAT--A-CATgttgtatttacttttttttaaatctatacgttagattgtgttttttaatctgaaaggaaaataaataaataaatatcgctaagtgagaacattacgttttgaaatagatgtcatttacatatcgaataagtttggccatcggcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttgccgctttctatggcgagatatgggaggatctaaatctggtcagagctatttaaactttttctccatatcgctattaaagtaagactctaagtaaaaagtg
gi|21 : aATACA----G------GTATCTCTATACAGCAATTGATCATATA------------A-CA--TGTTTAAAGCCTA--------C-------ACAAAT--G-CATGAAAA-----------------------------------CAACTGAAACTTGT-ATTAACTACACCTAC--ATGTATCA--CATC-AACC---------TAAATCAGATTTAC-TAAG-AC-GCACAAA---TT-T--TAT---------------------------------------T---CTTTT---AA--------------------T--------------------------TT------------------------tacaacacctcatcaaaggtgtcatcaaataaccttaaattgtattaagcataaacatgaagctttttttcatgtttgtataaaatgcattattaattaggtgatgtttgtaaatctgacagcaaaataaagaaatttcgctaatgtaaggacgttttgctatagatgccattagcatatcgacattgtttaaacttgaccatcggcaatagtaattatcaattcttaattcgtcatagaagagacaaacaagcaacaca
gi|22 : atacaaATACA----A------ATATTTTTA----ACAA------ATGC---------------CA--TCTTTATATCTTG--------C-------GCAAAG--A-CATGAAAATATGGAGATA------GTGAGATTAA-A--AA---CAATTA-AACCTATTACTTGTTATATTCAT--A------A--AATC--------------TAAATCTGATTTAC-AAAG-Attttatgcgtttacttactgttt
gi|26 : gaatataaactacaaATACA----C------ATAT-TTTATA-AGAACTCAAATATATA------------A-TA--TGTTTATAACCTA--------A-------ACAAAT--G-CATGAAAATGTAAt
gi|23 : aaatacaaTATA----G------ATGTATTTATTCAGCAATTAA-------------------A-TA--TGTTTATAGCCTA--------C-------A-ACAT--A--GTGAAAATATGAGTATA------GTGAGA--AC-ATGAA----------AACATGTCA--AATCA--------------------------------AT--CTAAATCATACTAAC-CAAG-AA-ACTCAAA---AT-TCCTATT---tgatttgaacatattattacatctacc
gi|12 : ataaagCTTTATTCAGCAATTAAATATACA------------A-CA--TGTTTAAAGTATA--------C-------ATAAAT--A-CATGAAACTATGAATATA------GTGAGA--AC-ATGCA---CAATTA-AACCTATCATTAGTTATACCAAT--A------A--CATC-AACC---------TAGATCAGATCTAC-CAAG-AA-ACACAAA---AT-T--TATT---T----------------------GC----------T---TTTTTAAAAA--------------------T--------------------------CTATACATTTGGTTGTTTCTTAATCTGAAAGTA----AAATTAA--TAAA--T---T-TCGC--TAAGTTAAGAACAGTACTTTTTGCTATAGTTGTCATTAGAATATCGAATTGT-TTTAAGTTTGGCCATCAGCAATAGattc
gi|6 : ATTAAACAATTTAACATATT------------A-CA--AGTTT-TA-CCTA--------T--------CAAATCAA-CCT--AAAT-CAGATTTA------TCAAAA--AGCGTGAATTCCATTTT---CTTATCAT-----ATACTTTT--T------A--C------CTTTTTATTGATA--------------AAG-AATGCGTTA-------T--TGTT---A----------------------TG----------T---TTCTT---AA--------------------T--------------------------CT------------------------GAAATCA----AACTG----------T---T-TC----TAAATTAAGGACAGTACGTATTGTTATAGATGTTA-AAGCA--------TTGCCTTAAACTTGGCCATCAGCAATAGATATG
gi|17 : catagcctgaagatagaataaccgtaacggtatttgtataaaatatatgacagatacaaatatatttattcagtaattaaacattatagcctatacaaatacatgaaggtatggagatagtgagaA--TGTTTATAGCCTA--------C-------ACAAA-----CATGCAAATGTGAGTATA------ATGAGG--AC-AAGAA---CAATTA-AACCTATCGTCAGTTATACATAT--A------A--AATC--------------TAGATCAGATTTAC-CAAG-AA-GCACAAACTTAT-T--TATT---TA---------------------TG----------T---TTtttaaaacacgtctgtgttaattctttattaaagggacaaaacaagtaataaatggtattcgttttcaataaaatgcatgttacaaaattgacatatcccaccatttctttaaatattttgtcaaatcgtcatcatgttttat
gi|9 : ACCATTAGTTATACCTAT--A------A--CATC-AACC---------TAGATCAGATTTACATAAA-AA-GCACAAC---AT-T--TATT---T----------------------TAATTTCATTTTT---TTTTT---AACCCTTACATTTGGTTATGTTT--------------------------CTTAATCT------------------GAGAGCAAAATAAATAAA--TAAA--T---T-TCAC--TAAGCTAACAACAGTATGTTTTGCTATAGATGTCATTAGCATATCAAATTTG-TTTTAGTTTAGCCATTGGCAATAGTAATGgcattaactgtttttttagaccaaacattagttgttgcttctcaatctgaaagcaaaataaagatatgtataatgtataaacat
gi|25 : ---AT-T--TATTAGGT----------------------TG----------TGTTTTTTT---AA--------------------T--------------------------CT------------------------GAAAGCA----AAATAAA--CAAA--T---T-TCGT--TAAGTTtttaaaaatatttttgccttaattctttaaagaagggacaaacaaataagataaagtaatcaaacccgattatttgatctgatttcacatcatatctttaattactctgttaa
gi|4 : ttgattttttaaaatctT-T--TAGT---TAA--------------------TG----------T---TTCTT---GA--------------------T--------------------------CT------------------------GAAATCA----AGCTAAA--TTAA--T---T-TCGCGCTGAATTTAAGACAGTACGTTT-GCTATAGATGTCATTAGCATATCGAATTTG-TTTAGGTTTGGCCATCGGTTAAAGTTGTGtagaacacaacagtattgaactagaggttagtagtcattg
gi|5 : atacaaatacaactatgtttattcagcaattaaacatacatatgtatcctgtatcctgtttatagcctacacacatacttgaaaatatgaatatagtgagaatatgaacaatttaacctagtatcatacctatcaaatcaacctgaatcagatttaccaagaagcacaagatttattttatttatatttgtatttacttttaattttttcagatctatacATT---G----------------------TG----------T---TTTTT---AA--------------------T--------------------------CT------------------------GAAAGGA----AAATAAA--TAAA--TAAATATCGC--TAAGTGA-GAACATTACGTTTTGAAATAGATGTCATTTACATATCGAA-------TAAGTTTGGCCATCGGCAttttaaatgtttttttgtcttaattatttattaaagggacaatcacgtaggaaattatattcattttcaataaattcgtgctacaaaattaacatgtccttttatttctttgaatattttcgtattaatcgtattctatggcgaaattatgggaggataatctaaatttggtaagagctatttgattttttttctccatataaatatccatatgtaaacaaaactcaaagttcaaaatgtacttgaaatgacagtag
gi|7 : atacaattatctatatctatattcggcaattaaaaatacaacatgtttatatccatgaaaatataaataaagtgagaatatgaacaattaaacctatcattagttatactaaaatcatcaacctagataagatttacaaagaagcacaacatttatttgatttttgttgtatttacttttttttaaatctatacgttagTT---A----------------------TG----------T---TTCTT---AA--------------------T--------------------------CT------------------------GAAAGCA----AAATAAA--TAAA--T---T-TCAT--TAAGTAAAGAACAGTACGTATTGTTGTTATTGTCATTATTATATCGAATTTG-TTTAAGTTTGGCCATCGGCAGTTGTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttgccgctttctatggcgagatatgggaggatctaaatctggtcagagctatttaaactttttctccatatcgctattaaagtaagactctaagtaaaaagtg
gi|28 : attcttttaaaaatcgaaacattaggTT---A----------------------TG----------T---TTCTT---AA--------------------T--------------------------CT------------------------GAAAGCA----AAATATA--TAaacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctaccactttctatggcgagatgatgggaggattatctaaatgtggtaagagctatatttaaacgttttctccatatcgatatttaagcaagactgtaagtttaaagtgtgtttgaaacgacagtaagatgatagtctattc
gi|13 : cagcatgttattttttttatttttatttttttaatatatacattaag----------------------TG----------T---TTCTT---AA--------------------T--------------------------CT------------------------GAAAGCA----AAATAAA--TAAA--T---T-TCGC--TAAGTTAAAGAAAGTACGTTTTGCTTAAGATTCCAATAGCATATCGGATTTG-T
gi|10 : atataaatatctttattcagcaactaaacatacagcatgtttatagcccacacaaatacatgaaaatatgaatataatgagaacatgaacaatttaacctatcattagtgatacctatgatattagcattgatttaccaagaattacgaactttattttatttttgtttgtatttacatttttatctttacatatggtgg----------------------TG----------T---TTGTA---AA--------------------T--------------------------CT------------------------GACAGCA----AAATAAA--GAAA--T---T-TCGC--TAA----TGTA-AGGACGTTTTGCTATAGATGCCATTAGCATATCGACATTG-TTTAAACTTGACCATCGGCAATAGTAAT
gi|15 : aatacaaatatctctgttctgcaattaaatatataacatctttataacctacactaggaacaaatacattacaacacctcatcaaaggtgtcatcaaataaccttaaattgtattaagcataaacatgaagctttttttcatgtttgtataaaatgcattattaattaggtga----------------------TG----------T---TTCTA---AA--------------------A--------------------------TT------------------------GAA-GCA----AAACAAAATTATA--T---A-ACAC--TAAATTCAAGACAGTATATTTTTCTCTTGATATCATTAGCGTATtatcaattcttaattcgtcatagaagagacaaacaagcaacaca
gi|24 : tatgtacatatacatttattcagcaataaacatacagcacctgtatatggcttaatttaatatacacatatatgaaaatatgaagacagtaagaataaccaatcaaatcagatttcatagctgggaaacattttttttaattcttgtttttcaaaataaaaaaagaatttacacctggtataattatattaggtca---TTTTT---AA--------------------T--------------------------CT------------------------G-AATTA----AAA-AAA--AAAATTT---T-TTGC--TAAATTAAGGACAGTATGTTTTGTTATAGCTTTCATTAGTATATCAAATTTG-TTTAGG
gi|17 : ttttactttattttgtataaaatccatgattcgtaaggtgattcTC---AA--------------------T--------------------------CT------------------------GAAAGCA----AAATAAA--
gi|2 : atgtttatagcctacacaaacatgcaaatgtgagtataatgaggacaagaacaattaaacctatcgtcagttatacatataaaatctagatcagatttaccaagaagcacaaacttatttatttatgtttgcattaactgtttttttagaccaaacattagttgttgcttcAACCTAGTAAGAGCTAT-TTTAAACTTTTTCTTCATATCA-----CA-ATCTAAGTAGGACTCTAAGTTAAAAGTGCACTTGAAACGACAGTAAGATGATAGTCTATTCAAGTTA------TTTATTTCTGCATACCAAC-TTTGGTTATATATGTCTAAGATTCTGTATTTTATGTGTGCAAAGCTTGTTTGTTCTATATCATACTGATAGAGCCAAATATCTGTCATACCTAAGGTTTGTTATATTGATTTGATTTGA---------------TCCATTATAAGAATTATTATTATCGACATCATTT---TTTTTTTTGTGTTTCATAAAGTTTCTTAACAATATGTTAAGATGGAACAATTATATCATATTAATGGATTAGAATGAAACAAAGGCTGTTTACATGTGTACCTAGTTTATTCAGTGTTTAGATTAAATGATGACGTTATGAAAGTAG--ACGTTTCTCAAAgatatgtataatgtataaacat
gi|3 : ggggcgagtgtgctttagtagtaaactataggtacttattcagatgttgcatccaatctatggtcattttcacacgattcacacacttttgaaaagtgtaatcccattggctttagtcaaggatcaaagacaaagtattgatttcagaaatagacatgaaagcatttattttccctacataatttgagaaaaataacacaatgtttatagatcaccagtatatacaaatgtctttattcagcaattaagcatacaatatgtttatagcctacacaaatacatgaaaatatgaatatagtgggaacatgaacaattgaacttatcattagttatacccataacaccaactttatatatagatcagattaaccaagaagcacaaaatttattttatttttttaatctgaaagcaaaataaataaatttcgctaagttaaggacagtacattttgctatagatgtcattacatatggaatttgtttaagtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttgccgctttctttggtgagattttcggaagatAATCAGGTAAGAGTTAT-TATAAACTGTGTTTATATATCG-----AT-ATTTAAGTTAGACTCTAACTTAAAAGTGTGCTTGAAACGACAGTAAGATGAAAGTCTATTCGAATTA------TTTGTTTTTGTGTA-ACAAGTTTGGTGATATATGTCTATGATT-TGT-TTTTATGTGTTCAAAACTTATTTGTTCCATATCATACTGATAGAGCAAAATATGTGTCATATCTAAGGTTTTGGATATTGATTTGATTTGAAAATC-CCGGTTTGATCCATTATAAGAATTATTTTTATCGGTATCAT
gi|4 : acacatacaaatatctttattcagcaattaaacatacaatatgtttatagcctacacaaataacatgaaaatatgactatagtgagaacatgaacaattgaacctaccataagttatactatatcatcaacctagatcagatttaccaagtaagacaaatgtatcttactttttcggtatataaattaggttatgtttattaatctgaaagcaaaataaatacattttgcttaagtaaagaacagtacgttttgctaaagttgtcttagcatatcgaattcgctttagtttggccatcagcagcagtaatgtttaaaatattttgtcttaattctttaaagaatggaccaacaagtaacaagtgatacttattttcaaaaaaaaaatatgttacaaaaattacctatcctttcttttctttgaatagtttcacatcattcgctttctatggcgagaatataggaagtaaatatcAATTTGGTAAGAGCTAT-TTGATTTTTTTTCTCCATATAAATATCCATATGTAAACAAAACTCAAAGTTCAAAATGTACTTGAAATGACAGTA
gi|5 : atacaaatacaactatgtttattcagcaattaaacatacatatgtatcctgtatcctgtttatagcctacacacatacttgaaaatatgaatatagtgagaatatgaacaatttaacctagtatcatacctatcaaatcaacctgaatcagatttaccaagaagcacaagatttattttatttatatttgtatttacttttaattttttcagatctatactttagttaatgtttcttgatctgaaatcaagctaaattaatttcgcgctgaatttaagacagtacgtttgctatagatgtcattagcatatcgaatttgtttaggtttggccatcggttaaagttgtgttttaaatgtttttttgtcttaattatttattaaagggacaatcacgtaggaaattatattcattttcaataaattcgtgctacaaaattaacatgtccttttatttctttgaatattttcgtattaatcgtattctatggcgaaattatgggaggataatctaAATCTGGTCAGAGCTAT-TT-AAACTTTTTCTCCATATCG-----CT-ATTAAAGTAAGACTCTAAGTAAAAAGTGg
gi|7 : atacaattatctatatctatattcggcaattaaaaatacaacatgtttatatccatgaaaatataaataaagtgagaatatgaacaattaaacctatcattagttatactaaaatcatcaacctagataagatttacaaagaagcacaacatttatttgatttttgttgtatttacttttttttaaatctatacgttagattgtgttttttaatctgaaaggaaaataaataaataaatatcgctaagtgagaacattacgttttgaaatagatgtcatttacatatcgaataagtttggccatcggcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttgccgctttctatggcgagatatgggaggatctaAATGTGGTAAGAGCTATATTTAAACGTTTTCTCCATATCG-----AT-ATTTAAGCAAGACTGTAAGTTTAAAGTGTGTTTGAAACGACAGTAAGATGATAGTCTATTC
gi|11 : attcttttaaaaatcgaaacattaggttatgtttcttaatctgaaagcaaaataaataaatttcattaagtaaagaacagtacgtattgttgttattgtcattattatatcgaatttgtttaagtttggccatcggcagttgtaacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctaccactttctatggcgagatgatgggaggattatctaACTCTAGGTTAAAATTGTGCTTTAAATGACAGTA------T--TTTTTTCGAATTACATGTATTTACTTCTGACT-CAAAC-ATTGGAGATATATCTCTTGATTTCAGTGTTTTATGTATTCAAAGCTATTTTGTTCGATATT-TATT-ATGAAGCCCTATACGTGTCATACCTGAGGTCCAAAAACTTGATTT--TTTAAAATGCACAA-TTTGATTAATCATAACAATTATTTTTATTAGCGTCATTTATGTTTT
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): ATAATTTAGCTAACGTTTCTGAGTGCATAAAAAGCAAAGTTTCATGACAATTTGTTTTATACTGAAGTCATTGGCAAATCAAACTTACTGGTTACGATTTGATTTAAGGTAAAGATTTTATGTTTGTAAATATTTCTGTTAATAAGGCCAGCATTAAGTAGGAAGTGATATTTGTTTTCAATAAAATTCATATTGCAAAATTAACAGTTGCTTTCTTATCTTTGAATGCTTTATCGTA
Unaligned ( gi|27 ): TTTCTTTTAAGTAAGATCAATTAAGCAAGAGAAAAAAATATTCATTGTCAACAAAATTCATATTGCAAAATTTACATGTTCATCACTTCGAAT
Alignments
lowQualScore : 11 111111111 1111111 2222222 11111111111111 111 33333333333333333333333333333333333333333333333333333333 11111111111111111111 222222222222222222222222 111111 222222 11 11 1 777777777 333 22
lowQualScore : 2 7 6 7 1 33 6 888888888 666 1 6666666 1 9 5 5 9999999 22 666666 22222222222222 22 8888888888888888 44 3 555555 1 333 1 1 333 2 5 1 1 88 7777777 7777777 2 2 2 000 2 22 777777777 55555555555555555555555555555555555555555555555555555555 222 333 77777777777777777777 777777777777777777777777 5555 33 33 444 2 66 2 33 0 66666 3 6 3 666666 44 0 0 888888 00 3 3 2 44 22 0 3 1 1 3 2 44 4444 2 3 0 555555555 4 2 777 2 2 2 2 4 77
lowQualScore : . . . . . .. . ......... ... . ....... . . . . ....... .. ...... .............. .. ................ .. . ...... . ... . . ... . . . . .. ....... ....... . . . ... . .. ......... ........................................................ ... ... .................... ........................ .... .. .. ... . .. . .. . ..... . . . ...... .. . . ...... .. . . . .. .. . . . . . . .. .... . . . ......... . . ... . . . . . ..
lowQualScore : 5 3 7 3 0 22 7 555555555 444 9 2222222 0 6 0 0 4444444 99 111111 77777777777777 55 8888888888888888 33 6 555555 9 333 9 9 333 0 7 0 2 44 2222222 2222222 2 4 5 000 1 99 333333333 44444444444444444444444444444444444444444444444444444444 888 777 11111111111111111111 888888888888888888888888 0000 22 77 777 7 33 7 77 5 77777 1 7 2 444444 99 8 8 888888 88 2 0 5 22 55 5 0 0 0 2 5 55 2222 5 2 2 222222222 0 0 333 5 5 5 5 0 55
consensus : GGGGCGAGTGTGCTTTAGTGGTAAACTATAGGTACTTATTCAGATGTTGCATCCAATCTATGGTCATTTTCACACGATCCACACACTTTTGAAAAGTGTAATCCCATTGGCTTTAGTCAAGGATCAAAGACAAAGTATTGATTTCANAAATAGACATGAAAGCATTTATTTTCCCTACATAATTTGA-GA-AAAATA---AC----ACGNTATTT-------ATAGATCA-C-A---GTATATACA--A------ATATCTTTATTCAGCAATTAAACATACA------------A-CA--TGTTTATAGCCTA--------C-------ACAAAT--A-CATGAAAATATGAATATA------GTG-A---GAA-CATG-AA---CAATTA-AACCTATCATTAGTTATACCTATAA-CATCAACC-------T-------AGATCAGATTTAC-CAAG-AA-GCACAAA---AT-T--TA---------TT---T------------------T----------------------G----------T---TTCTT---AA--------------------TCT------------------------GAAAGCA----AAATAAA--TAAA--T---T-TCGC--TAAGTTAAGGACAGTAC-GTTTTG--CTATAGAT-----GTCATTAGCATATCGAATTTG-TTTAAGTTTGGCCATCGGCAATAGTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCTGGTAAGAGCTAT-TTTAAACTTTTTCTCCATAT------CGATATTTAAGTAAGACTCTAAGTTAAAAGTGCGCTTGAAACGACAGTAAGATGATAGTCTATTCGAGTTA------TTTATTTCTGNATACNAACTTTGGTNATATATGTCTANGATT-CTGTATTTTATGTGTNCAAAGCTTGTTTGTTCTATATCATACTGATAGAGCCAAATATNTGTCATACCTAAGGTTCGNAATATTGATTTGATTTGAAAAG--CC-GGTTTGATCCATTATAAGAATTATTNTTATCGGCATCATTT---TTTTTTTTGTNTTTCATAAANTTTCTTAACAATATGTTAAGATGGAANAATTATATCATATTAATGGATTAGAATGAAACAAANGCTGTTTACNTGTGTACCTAGTTTATTCAGTGTTTAGATTAAATGATGACGTTATGAAAGTAGACACGTTTCTCAAA
Reference ( family-5166 ) : GGGGCGAGTGTGCTTTAGTAGTAAACTATAGGTACTTATTCAGATGTTGCATCCAATCTATGGTCATTTTCACACGATTCACACACTTTTGAAAAGTGTAATCCCATTGGCTTTAGTCAAGGATCAAAGACAAAGTATTGATTTCAGAAATAGACATGAAAGCATTTATTTTCCCTACATAANTTGA-GA-AAAATA---AC----ACGNTATTT-------ATANATCA-C-A---GTATATACA--A------ATATCTTTATTCAGCAATTAAACATACA------------A-CA--TGTTTATAGCCTA--------C-------ACAAAT--A-CATGAAAATATGAATATA------GTG-A---GAA-CATG-AA---CAATTA-AACCTATCATTAGTTATACCTATAA-CATCAACC-------T-------AGATCAGATTTAC-CAAG-AA-GCACAAA---AT-T--TA---------TT---T------------------T----------------------G----------T---TTTTT---AA--------------------TCT------------------------GAAAGCA----AAATAAA--TAAA--T---T-TCGC--TAAGTTAAGGACAGTAC-GTTTTG--CTATAGAT-----GTCATTAGCATATCGAATTTG-TTTAAGTTTGGCCATCGGCAATAGTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCTGGTAAGAGCTAT-TTTAAACTTTTTCTCCATAT------CGCTATTTAAGTAAGACTCTAAGTTAAAAGTGTGCTTGAAACGACAGTAAGATGATAGTCTATTCGAATTA------TTTATTTCTGCGTACAAACTTTGGTGATATATGTCTANGATT-CTGTGTTTTATGTGTTCAAAGCTTNTTTGTTCNATATCATACTGATAGAGCCAAATACGTGTCATACCTAAGGTTCGNNATATTGATTTGATTTGAAA----CC--GTTTGATCCATTATAAGAATTATTTTTATCGGCGTCATTTATGTTTTTTTTGTGTTTCATAAAGTTTCTTAACAATATGTTAAGATGGAACAATTATATCATATTAATGGATTAGAATGAAACAAAGGCTGTTTACATGTGTACCTAGTTTATTCAGTGTTTAGATTAAATGATGACGTTATGAAAGTAG--ACGTTTCTCAAA
gi|1 : GGGGCGAGTGTGCTTTAGTGGTAAACTATAAGTACTTATTCAGATGTTGCATCCAATCTATGGTCATTTTCACACGATCCACACACTTTTGAAAAGTGTAATCCCATTGGCTTTAGTCAAGGATCAAAGACAAAGTATTGATTTCATAAATAGACATGAAAGCATTTATTTTCCCTACATAATTTGA-GA-AAAATA---AC----ACACTATTT-------ATAGATCA-CCA---GTATATACA--A------ATGTCTTTATTTAGCAATTAAGCATACA------------A-CA--TGTTTATAGCCTA--------C-------ACAAAT--A-CATGAAAATATGAATATA------GCG-A---GAA-AATG-AA---CAATTG-AACTTATCATTAGTTATACCTATAA-CACCAACT-------TTATATATAGATCAGATTTAC-CAAG-AA-GCACAAA---AT-T--TA---------TT---T------------------T----------------------G----------T---TTTTT---AA--------------------TCT------------------------GAAAGCA----AAATAAA--TAAA--T---T-TCGC--TAAGTTATGGACAGTAC-GTTTTG--CTATAGAT-----ATCATTAGCATATGGAATTTG-TTTAAGTTTAGTCATCGGCAATAGTTATG
gi|1 : AATCTGGTAAGAGCTAT-TTTAAACTTTTTCTCCATAT------CACAATCTAAGTAGGACTCTAAATTAAAAGTGCACTTGAAACGACAGTAAGATGATAGTCTATTCAAGTTA------TTTATTTCTGAATACACACTTTGGTTATATATGTCTAAGATT-CTGTATTTTATGTGTGCAAAGCTTGTTTGTTCTATATCATACTGATAGAGCCAAATGTCTGTCATACCTAAGGTTTGTAATATTGATTTGATTTGAAAAG--CCAAGTTTGATCCATTATAAGAATTATTATTATCAGCATCATTT------TTTTTGTCTTTCATAAATTTTCTTAACAATATGTTAAGATGGAAGAATTATATCATATTAATGGATTAGAATGAAACAAATGCTGTTTACTTGTGTACCTAGTTTATTCAGTGTTTAGATTAAATGATGACGTTATGAAAGTAGACACATTTCTCAAAgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatctggtaagagctattttaaactttttctccatatcacaatctaagtaggactctaaattaaaagtgcacttgaaacgacagtaagatgatagtctattcaagttatttatttctgaatacacactttggttatatatgtctaagattctgtattttatgtgtgcaaagcttgtttgttctatatcatactgatagagccaaatgtctgtcatacctaaggtttgtaatattgatttgatttgaaaagccaagtttgatccattataagaattattattatcagcatcattttttttgtctttcataaattttcttaacaatatgttaagatggaagaattatatcatattaatggattagaatgaaacaaatgctgtttacttgtgtacctagtttattcagtgtttagattaaatgatgacgttatgaaagtagacacatttctcaaa
gi|10 : ggggcgagtgtgctttagtggtaaactataagtacttattcagatgttgcatccaatctatggtcattttcacacgatccacacacttttgaaaagtgtaatcccattggctttagtcaaggatcaaagacaaagtattgatttcataaatagacatgaaagcatttattttccctacataatttgagaaaaataacacactatttatagatcaccagtatatacaaatgtctttatttagcaattaagcatacaacatgtttatagcctacacaaatacatgaaaatatgaatatagcgagaaaatgaacaattgaacttatcattagttatacctataacaccaactttatatatagatcagatttaccaagaagcacaaaatttattttgttttttaatctgaaagcaaaataaataaatttcgctaagttatggacagtacgttttgctatagatatcattagcatatggaatttgtttaagtttagtcatcggcaatagttatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATACA--A------ATATCTCTGTTCTGCAATTAAATATATA------------A-CA--TCTTTATAACCTA--------CACTAGGAACAAAT--A-CAT
gi|10 : a------------------T----------------------G----------T---TTGTA---AA--------------------TCT------------------------GACAGCA----AAATAAA--GAAA--T---T-TCGC--TAATGTAAGGAC------GTTTTG--CTATAGAT-----GCCATTAGCATATCGACATTG-TTTAAACTTGACCATCGGCAATAGTAATtacaacacctcatcaaaggtgtcatcaaataaccttaaattgtattaagcataaacatgaagctttttttcatgtttgtataaaatgcattattaattaggtgatgtttgtaaatctgacagcaaaataaagaaatttcgctaatgtaaggacgttttgctatagatgccattagcatatcgacattgtttaaacttgaccatcggcaatagtaattatcaattcttaattcgtcatagaagagacaaacaagcaacaca
gi|11 : aatacaaatatctctgttctgcaattaaatatataacatctttataacctacactaggaacaaatacattacaacacctcatcaaaggtgtcatcaaataaccttaaattgtattaagcataaacatgaagctttttttcatgtttgtataaaatgcattattaattaggtgaTCTAAAT------CGACATTTAATAAATACTCTAGGTTAAAATTGTGCTTTAAATGACAGTA------T--TTTTTTCGAATTACATGTATTTACTTCTGACT-CAAACATTGGAGATATATCTCT-TGATTTCAGTGTTTTATGTATTCAAAGCTATTTTGTTCGATATT-TATT-ATGAAGCCCTATACGTGTCATACCTGAGGTCCAAAAACTTGATTT--TTTAAAATGCACA--ATTTGATTAATCATAACAATTATTTTTATTAGCGTCATTTATGTTTTtatcaattcttaattcgtcatagaagagacaaacaagcaacaca
gi|12 : caCTTTATTCAGCAATTAAATATACA------------A-CA--TGTTTAAAGTATA--------C-------ATAAAT--A-CATGAAACTATGAATATA------GTG-A---GAA-CATG-CA---CAATTA-AACCTATCATTAGTTATACCAATAA-CATCAACC-------T-------AGATCAGATCTAC-CAAG-AA-ACACAAA---AT-T--TA---------TT---T------------------G----------------------C----------T---TTTTTAAAAA--------------------TCTATACATTTGGTTGTTTCTTAATCTGAAAGTA----AAATTAA--TAAA--T---T-TCGC--TAAGTTAAGAACAGTAC-TTTTTG--CTATAGTT-----GTCATTAGAATATCGAATTGT-TTTAAGTTTGGCCATCAGCAATAGagcaatggtgtaatattttaatcgcaatatctaaagtcataatttaatcata
gi|13 : ATATA--A------ATATCTTTATTCAGCAACTAAACATACA------------G-CA--TGTTTATAGCCCA--------C-------ACAAAT--A-CATGAAAATATGAATATA------ATG-A---GAA-CATG-AA---CAATTT-AACCTATCATTAGTGATACCTATGA-TATTAGC------------------ATT-GATTTAC-CAAG-AA-TTACGAA---CT-T--TA---------TT---T------------------T----------------------A----------T---TTTT
gi|13 : ------------------T----------------------G----------T---TTCTT---AA--------------------TCT------------------------GAAAGCA----AAATAAA--TAAA--T---T-TCGC--TAAGTTAAAGAAAGTAC-GTTTTG--CTTAAGAT-----TCCAATAGCATATCGGATTTG-Tgtttgtatttacatttttatctttacatatggtggtgtttcttaatctgaaagcaaaataaataaatttcgctaagttaaagaaagtacgttttgcttaagattccaatagcatatcggatttgt
gi|14 : atataaatatctttattcagcaactaaacatacagcatgtttatagcccacacaaatacatgaaaatatgaatataatgagaacatgaacaatttaacctatcattagtgatacctatgatattagcattgatttaccaagaattacgaactttattttatttttgtttgtatttacatttttatctttacatatggtggATACA--A------ATATCTTTATTCAGCAATTAAACATACA------------A-TA--TGTTTATAGCCTG--------C-------ACAAATA-A-CATGAAAATATTAATATA------GCG-A---GAA-CATG-AA---CAGTTA-AACATATGATAAGTTATACCTATAA-CAT-AACC-------T-------AGATCAGAGTTAC-CAAG-AA-GCACAAA---AT-G--TA----------T---T------------------T----------------------GAA--------T---TTTTT---AA--------------------
gi|15 : tgatatacaaTATGTACA--T------ATACATTTATTCAGCAAT-AAACATACA------------G-CACCTGTATATGGCTTAATTTAATAT-------ACACAT--A-TATGAAAATATGAAGACA------GTA-A---GA---ATA-AC---CAATCA-AATCaatctatacataaggttatgtttcttaatctgaaggcaacataaatatataaacagtataggtgttgaaaacataacgtttcattaattagaattcagttgtttt
gi|15 : ------------------T----------------------G----------T---TTCTA---AA--------------------ATT------------------------GAA-GCA----AAACAAAATTATA--T---A-ACAC--TAAATTCAAGACAGTAT-ATTTTT--CTCTTGAT-----ATCATTAGCGTATagatttcatagctgggaaacattttttttaattcttgtttttcaaaataaaaaaagaatttacacctggtataattatattaggtcatgtttctaaaattgaagcaaaacaaaattatataacactaaattcaagacagtatatttttctcttgatatcattagcgtat
gi|17 : tatgtacatatacatttattcagcaataaacatacagcacctgtatatggcttaatttaatatacacatatatgaaaatatgaagacagtaagaataaccaatcaaatcagatttcatagctgggaaacattttttttaattcttgtttttcaaaataaaaaaagaatttacacctggtataattatattaggtcaA--TGTTTATAGCCTA--------C-------ACAAA-----CATGCAAATGTGAGTATA------ATG-A---GGA-CAAG-AA---CAATTA-AACCTATCGTCAGTTATACATATAA-----AATC-------T-------AGATCAGATTTAC-CAAG-AA-GCACAAACTTAT-T--TA---------TT---TA-----------------T----------------------G----------T---TT
gi|17 : CAAAC--AT-T--AG---------TTG--T------------------T----------------------G----------C---TTCTC---AA--------------------TCT------------------------GAAAGCA----AAATAAA--gcattaactgtttttttagaccaaacattagttgttgcttctcaatctgaaagcaaaataaagatatgtataatgtataaacat
gi|18 : atgtttatagcctacacaaacatgcaaatgtgagtataatgaggacaagaacaattaaacctatcgtcagttatacatataaaatctagatcagatttaccaagaagcacaaacttatttatttatgtttgcattaactgtttttttagacATATACA--A------AAATCTTTGTTCAACAATTAAACAAAGA------------A-CA--TGTT----------------------------AAT--A-CATTTAAATATAATTATA------GTG-A---GTA-TATA-AA---CAATCA-AACACATTATTAGTTATACATATCG-AATCCACC-------T-------AACTCAGATTTAC-TAAG-AA-ACACAAA---AT-T--TA---------TT---T------------------T----------------------A----------T---TTgatatgtataatgtataaacat
gi|19 : atacaaAAATAG---TGAAA--------TTTCCC---ATAAATTG--GA-TAAATG---TC----AAATCA----------AAAAATCA-T-A-------ATACA--G------ATATCTTTGTTCAGCAATAAAACATACA------------------TATTTATAGCCTA--------C-------ACAAAT--A-CATGGAAATATGAATATA------GTGNN---NNN-NNNN-NA---TATTTATAGCCTAatgtttgtatttccttttttttgttattatcatgcattatatatta
gi|19 : aattgacggga-AAAACAT--AC----A---TATTT-------ATAGCCTA-C-ACAAATACATGGA--A------ATATGAATAT--AG----TGNNNNNNNN------------N-NA--TATTTATAGCCTA--------C-------ACAAAT--A-CATGGAAATATGAATATA------GTG-A---GAA-TATG-AA---CAcacaaatacatggaaatatgaatatagtgagaatatgaaca
gi|2 : aattgacgggaaaatagtgaaatttcccataaattggataaatgtcaaatcaaaaaatcataatacagatatctttgttcagcaatGGGGCGAGTGTGCTTTAGTAGTAAACTATAGGTACTTATTCAGATGTTGCATCCAATCTATGGTCATTTTCACACGATTCACACACTTTTGAAAAGTGTAATCCCATTGGCTTTAGTCAAGGATCAAAGACAAAGTATTGATTTCAGAAATAGACATGAAAGCATTTATTTTCCCTACATAATTTGA-GA-AAAATA---AC----ACAATGTTT-------ATAGATCACC-A---GTATATACA--A------ATGTCTTTATTCAGCAATTAAGCATACA------------A-TA--TGTTTATAGCCTA--------C-------ACAAAT--A-CATGAAAATATGAATATA------GTG-G---GAA-CATG-AA---CAATTG-AACTTATCATTAGTTATACCCATAA-CACCAACTTTATATAT-------AGATCAGATTAAC-CAAG-AA-GCACAAA---AT-T--TA---------TT---T------------------T----------------------AT---------T---TTTTT---AA--------------------TCT------------------------GAAAGCA----AAATAAA--TAAA--T---T-TCGC--TAAGTTAAGGACAGTAC-ATTTTG--CTATAGAT-----GTCATTA-CATATGGAATTTG-TTTAAGTTT
gi|2 : AACCTAGTAAGAGCTAT-TTTAAACTTTTTCTTCATAT------CACAATCTAAGTAGGACTCTAAGTTAAAAGTGCACTTGAAACGACAGTAAGATGATAGTCTATTCAAGTTA------TTTATTTCTGCATACCAACTTTGGTTATATATGTCTAAGATT-CTGTATTTTATGTGTGCAAAGCTTGTTTGTTCTATATCATACTGATAGAGCCAAATATCTGTCATACCTAAGGTTTGTTATATTGATTTGA----------------TTTGATCCATTATAAGAATTATTATTATCGACATCATTT---TTTTTTTTGTGTTTCATAAAGTTTCTTAACAATATGTTAAGATGGAACAATTATATCATATTAATGGATTAGAATGAAACAAAGGCTGTTTACATGTGTACCTAGTTTATTCAGTGTTTAGATTAAATGATGACGTTATGAAAGTAG--ACGTTTCTCAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttgccgctttctttggtgagattttcggaagataacctagtaagagctattttaaactttttcttcatatcacaatctaagtaggactctaagttaaaagtgcacttgaaacgacagtaagatgatagtctattcaagttatttatttctgcataccaactttggttatatatgtctaagattctgtattttatgtgtgcaaagcttgtttgttctatatcatactgatagagccaaatatctgtcatacctaaggtttgttatattgatttgatttgatccattataagaattattattatcgacatcatttttttttttgtgtttcataaagtttcttaacaatatgttaagatggaacaattatatcatattaatggattagaatgaaacaaaggctgtttacatgtgtacctagtttattcagtgtttagattaaatgatgacgttatgaaagtagacgtttctcaaa
gi|20 : ggggcgagtgtgctttagtagtaaactataggtacttattcagatgttgcatccaatctatggtcattttcacacgattcacacacttttgaaaagtgtaatcccattggctttagtcaaggatcaaagacaaagtattgatttcagaaatagacatgaaagcatttattttccctacataatttgagaaaaataacacaatgtttatagatcaccagtatatacaaatgtctttattcagcaattaagcatacaatatgtttatagcctacacaaatacatgaaaatatgaatatagtgggaacatgaacaattgaacttatcattagttatacccataacaccaactttatatatagatcagattaaccaagaagcacaaaatttattttatttttttaatctgaaagcaaaataaataaatttcgctaagttaaggacagtacattttgctatagatgtcattacatatggaatttgtttaagtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttgccgctttctttggtgagattttcggaagatA-AAGATATCTAT----GTGATATAT-------ATACAT-A-T-A----TATATATGTTA------ATATCTTTAATCATCAATTAAAC-TATA------------A-CA--GGTTTATAGCCTG--------C-------ACTAAT--A-CATAAAAGTATGAATATACATATTGTG-A---GAC-TATA-AA---CAGATA-AACCCATTATTCGTTGTACTTATCA-AATCCACT-------T-------CAACCAGATTTAC-C
gi|21 : ttagaatgcATACA--G------GTATCTCTATACAGCAATTGATCATATA------------A-CA--TGTTTAAAGCCTA--------C-------ACAAAT--G-CATGAAAACA-------A------CTG-A----AA-CTTGTAT---TAACTA-CACCTA-CAT--G-------TATCA-CATCAACC-------T-------AAATCAGATTTAC-TAAG-AC-GCACAAA---TT-T--TA---------T---------------------------------------------------------T---CTTTT---AA--------------------TTT------------------------g
gi|22 : atacaaT-------ATAAACTA-C-A---A---ATACA--A------ATATTTTTA----ACAA------ATGC---------------CA--TCTTTATATCTTG--------C-------GCAAAG--A-CATGAAAATATGGAGATA------GTG-A---GAT-TAAA-AA---CAATTA-AACCTATTACTTGTTATATTCATAA-----AATC-------T-------AAATCTGATTTAC-AAAG-Attttatgcgtttacttactgttt
gi|23 : gaaTATA--G------ATGTATTTATTCAGCAATTAAATAT----------------------GTTTATAGCCTA--------C-------A-ACAT--A--GTGAAAATATGAGTATA------GTG-A---GAA-CATG-A---------A-AACATGTCA--A---------------ATCAATC-------T-------AAATCATACTAAC-CAAG-AA-ACTCAAA---AT-TCCTA---------TT---t
gi|24 : ataaag---TTTTT---AA--------------------TCT------------------------G-AATTA----AAA-AAA--AAAATTT---T-TTGC--TAAATTAAGGACAGTAT-GTTTTG--TTATAGCT-----TTCATTAGTATATCAAATTTG-TTTAGGattc
gi|25 : ttttactttattttgtataaaatccatgattcgtaaggtgattc---AT-T--TA---------TTAGGT------------------T----------------------G----------TGTTTTTTT---AA--------------------TCT------------------------GAAAGCA----AAATAAA--CAAA--T---T-TCGT--TAAGTTTAGAACACAACAGTATTGAACTAGAGGTTAGTAGTCATT
gi|26 : ttgattttttaaaatctATACA--C------ATAT-TTTAT-AAGAACTCAAATATATA------------A-TA--TGTTTATAACCTA--------A-------ACAAAT--G-CATGAA------AATGTA------ATG-ATTTGAA-CAT---A---TTATTA-CATCTACCg
gi|28 : aaatacaa---------TT---A------------------T----------------------G----------T---TTCTT---AA--------------------TCT------------------------GAAAGCA----AAATATA--TA
gi|3 : cagcatgttattttttttatttttatttttttaatatatacattaagACATACA--A------ATATCTTTATTCAGCAATTAAACATACA------------A-TA--TGTTTATAGCCTA--------C-------ACAAAT--AACATGAAAATATGACTATA------GTG-A---GAA-CATG-AA---CAATTG-AACCTACCATAAGTTATAC-TATAT-CATCAACC-------T-------AGATCAGATTTAC-CAAGTAA-G-ACAAATGTATCT--TA---------CT---T------------------TTTCGGTATATAAATTAGGTTATG----------T---TTATT---AA--------------------TCT------------------------GAAAGCA----AAATAAA--TACA--T---T-TTGCT-TAAGTAAAGAACAGTAC-GTTTTG--CTAAAGTT-----GTC-TTAGCATATCGAATTCG-CTTTAGTTTGGCCATCAGCAGCAGTAATG
gi|3 : acAATCAGGTAAGAGTTAT-TATAAACTGTGTTTATATAT------CGATATTTAAGTTAGACTCTAACTTAAAAGTGTGCTTGAAACGACAGTAAGATGAAAGTCTATTCGAATTA------TTTGTTTTTGTGTAACAAGTTTGGTGATATATGTCTATGATT--TGT-TTTTATGTGTTCAAAACTTATTTGTTCCATATCATACTGATAGAGCAAAATATGTGTCATATCTAAGGTTTTGGATATTGATTTGATTTGAAAAT--CCCGGTTTGATCCATTATAAGAATTATTTTTATCGGTATCATtttaaaatattttgtcttaattctttaaagaatggaccaacaagtaacaagtgatacttattttcaaaaaaaaaatatgttacaaaaattacctatcctttcttttctttgaatagtttcacatcattcgctttctatggcgagaatataggaagtaaatatcaatcaggtaagagttattataaactgtgtttatatatcgatatttaagttagactctaacttaaaagtgtgcttgaaacgacagtaagatgaaagtctattcgaattatttgtttttgtgtaacaagtttggtgatatatgtctatgatttgtttttatgtgttcaaaacttatttgttccatatcatactgatagagcaaaatatgtgtcatatctaaggttttggatattgatttgatttgaaaatcccggtttgatccattataagaattatttttatcggtatcat
gi|4 : acacatacaaatatctttattcagcaattaaacatacaatatgtttatagcctacacaaataacatgaaaatatgactatagtgagaacatgaacaattgaacctaccataagttatactatatcatcaacctagatcagatttaccaagtaagacaaatgtatcttactttttcggtatataaattaggttatgtttattaatctgaaagcaaaataaatacattttgcttaagtaaagaacagtacgttttgctaaagttgtcttagcatatcgaattcgctttagtttggccatcagcagcagtaatgtttaaaatattttgtcttaattctttaaagaatggaccaacaagtaacaagtgatacttattttcaaaaaaaaaatatgttacaaaaattacctatcctttcttttctttgaatagtttcacatcattcgctttctatggcgagaatataggaagtaaatatcATACA--A------CTATGTTTATTCAGCAATTAAACATACATATGTATCCTGTATCC--TGTTTATAGCCTA--------C-------ACACAT--A-CTTGAAAATATGAATATA------GTG-A---GAA-TATG-AA---CAATTT-AACCTAGTA----TCATACCTATCA-AATCAACC-------T-------GAATCAGATTTAC-CAAG-AA-GCACAAG---AT-T--TA---------TT---T------------------T----------------------A----------T---TT
gi|4 : atacaaT-T--TA---------GT---TAA----------------T----------------------G----------T---TTCTT---GA--------------------TCT------------------------GAAATCA----AGCTAAA--TTAA--T---T-TCGCGCTGAATTTAAGACAGTAC-GTTT-G--CTATAGAT-----GTCATTAGCATATCGAATTTG-TTTAGGTTTGGCCATCGGatatttgtatttacttttaattttttcagatctatactttagttaatgtttcttgatctgaaatcaagctaaattaatttcgcgctgaatttaagacagtacgtttgctatagatgtcattagcatatcgaatttgtttaggtttggccatcggttaaagttgtgttttaaatgtttttttgtcttaattatttattaaagggacaatcacgtaggaaattatattcattttcaataaattcgtgctacaaaattaacatgtccttttatttctttgaatattttcgtattaatcgtattctatggcgaaattatgggaggataatctaaatttggtaagagctatttgattttttttctccatataaatatccatatgtaaacaaaactcaaagttcaaaatgtacttgaaatgacagtag
gi|4 : atacaaatacaactatgtttattcagcaattaaacatacatatgtatcctgtatcctgtttatagcctacacacatacttgaaaatatgaatatagtgagaatatgaacaatttaacctagtatcatacctatcaaatcaacctgaatcagatttaccaagaagcacaagatttattttatttatatttgtatttacttttaattttttcagatctatacAATTTGGTAAGAGCTAT-TTGATTTTTTTTCTCCATATAAATATCCATATGTAAACAAAACTCAAAGTTCAAAATGTACTTGAAATGACAGTAttaaagttgtgttttaaatgtttttttgtcttaattatttattaaagggacaatcacgtaggaaattatattcattttcaataaattcgtgctacaaaattaacatgtccttttatttctttgaatattttcgtattaatcgtattctatggcgaaattatgggaggataatctaaatttggtaagagctatttgattttttttctccatataaatatccatatgtaaacaaaactcaaagttcaaaatgtacttgaaatgacagtag
gi|5 : atacaaatacaactatgtttattcagcaattaaacatacatatgtatcctgtatcctgtttatagcctacacacatacttgaaaatatgaatatagtgagaatatgaacaatttaacctagtatcatacctatcaaatcaacctgaatcagatttaccaagaagcacaagatttattttatttatatttgtatttacttttaattttttcagatctatactttagttaatgtttcttgatctgaaatcaagctaaattaatttcgcgctgaatttaagacagtacgtttgctatagatgtcattagcatatcgaatttgtttaggtttggccatcggttaaagttgtgttttaaatgtttttttgtcttaattatttattaaagggacaatcacgtaggaaattatattcattttcaataaattcgtgctacaaaattaacatgtccttttatttctttgaatattttcgtattaatcgtattctatggcgaaattatgggaggataatctaATACA--ATTATCTATATCTATATTCGGCAATTAAAAATACA------------A-CA--TGTTTATATCC-----------------------------ATGAAAATATAAATAAA------GTG-A---GAA-TATG-AA---CAATTA-AACCTATCATTAGTTATA-CTAAAATCATCAACC-------T-------AGATAAGATTTAC-AAAG-AA-GCACAAC---AT-T--TA---------TT---T------------------G----------------------A----------T---TTTTg
gi|5 : A---------TT---G------------------T----------------------G----------T---TTTTT---AA--------------------TCT------------------------GAAAGGA----AAATAAA--TAAA--TAAATATCGC--TAAG-TGAGAACATTAC-GTTTTG--AAATAGAT-----GTCATTTACATATCGAA-------TAAGTTTGGCCATCGGCAgttgtatttacttttttttaaatctatacgttagattgtgttttttaatctgaaaggaaaataaataaataaatatcgctaagtgagaacattacgttttgaaatagatgtcatttacatatcgaataagtttggccatcggcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttgccgctttctatggcgagatatgggaggatctaaatctggtcagagctatttaaactttttctccatatcgctattaaagtaagactctaagtaaaaagtg
gi|5 : atacaattatctatatctatattcggcaattaaaaatacaacatgtttatatccatgaaaatataaataaagtgagaatatgaacaattaaacctatcattagttatactaaaatcatcaacctagataagatttacaaagaagcacaacatttatttgatttttgttgtatttacttttttttaaatctatacgttagAATCTGGTCAGAGCTAT-TT-AAACTTTTTCTCCATAT------CGCTATTAAAGTAAGACTCTAAGTAAAAAGTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttgccgctttctatggcgagatatgggaggatctaaatctggtcagagctatttaaactttttctccatatcgctattaaagtaagactctaagtaaaaagtg
gi|6 : atacaattatctatatctatattcggcaattaaaaatacaacatgtttatatccatgaaaatataaataaagtgagaatatgaacaattaaacctatcattagttatactaaaatcatcaacctagataagatttacaaagaagcacaacatttatttgatttttgttgtatttacttttttttaaatctatacgttagattgtgttttttaatctgaaaggaaaataaataaataaatatcgctaagtgagaacattacgttttgaaatagatgtcatttacatatcgaataagtttggccatcggcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttgccgctttctatggcgagatatgggaggatctaCATAGCCTGAAGATAGAATA---ACCGTAACGGTATTTGTATAAAATATATGA-C-A---G---ATACA--A------ATATATTTATTCAGTAATTAAACAT-------------------------TATAGCCTA--------T-------ACAAAT--A-CATGAAGGTATGGAGATA------GTG-A---GAA-T-TA-AA---CAATTT-AACATATTACAAGTTTTACCTATCA-AATCAACC-------T-------AAATCAGATTTAT-CAAA-AA-GCGTGAA---TT-C--CA---------TT---T------------------T----------------------C----------T---T
gi|6 : ATTAAACAATTTAACATATT------------A-CA--AGTTT-TA-CCTA--------T--------CAAATCAA-CCT--AAAT-CAGATTTA------TCA-A---AAAGCGTG-AATTCCATTTT---CTTATCAT-----ATACTT-------TTTACC-------T----------TTTTATTGAT-AAAG-AATGCGTTA-------T--TG---------TT---A------------------T----------------------G----------T---TTCTT---AA--------------------TCT------------------------GAAATCA----AACTG----------T---T-TC----TAAATTAAGGACAGTAC-GTATTG--TTATAGAT-----GTTA-AAGCA--------TTGCCTTAAACTTGGCCATCAGCAATAGatcatatactttttacctttttattgataaagaatgcgttattgttatgtttcttaatctgaaatcaaactgtttctaaattaaggacagtacgtattgttatagatgttaaagcattgccttaaacttggccatcagcaatagatatgtttaaaacacgtctgtgttaattctttattaaagggacaaaacaagtaataaatggtattcgttttcaataaaatgcatgttacaaaattgacatatcccaccatttctttaaatattttgtcaaatcgtcatcatgttttat
gi|7 : catagcctgaagatagaataaccgtaacggtatttgtataaaatatatgacagatacaaatatatttattcagtaattaaacattatagcctatacaaatacatgaaggtatggagatagtgaga---------TT---A------------------T----------------------G----------T---TTCTT---AA--------------------TCT------------------------GAAAGCA----AAATAAA--TAAA--T---T-TCAT--TAAGTAAAGAACAGTAC-GTATTG--TTGTTATT-----GTCATTATTATATCGAATTTG-TTTAAGTTTGGCCATCGGCAGTTGTAACGatatgtttaaaacacgtctgtgttaattctttattaaagggacaaaacaagtaataaatggtattcgttttcaataaaatgcatgttacaaaattgacatatcccaccatttctttaaatattttgtcaaatcgtcatcatgttttat
gi|7 : attcttttaaaaatcgaaacattaggAATGTGGTAAGAGCTATATTTAAACGTTTTCTCCATAT------CGATATTTAAGCAAGACTGTAAGTTTAAAGTGTGTTTGAAACGACAGTAAGATGATAGTCTATTCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctaccactttctatggcgagatgatgggaggattatctaaatgtggtaagagctatatttaaacgttttctccatatcgatatttaagcaagactgtaagtttaaagtgtgtttgaaacgacagtaagatgatagtctattc
gi|8 : attcttttaaaaatcgaaacattaggttatgtttcttaatctgaaagcaaaataaataaatttcattaagtaaagaacagtacgtattgttgttattgtcattattatatcgaatttgtttaagtttggccatcggcagttgtaacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctaccactttctatggcgagatgatgggaggattatcta----ACGGTATAT-------ACAAAT-A-C-A---A---ATACT--A------ATATCTTTATTCAGCAATTAAACATACA--------------CA--TGTTTATAGCCTA--------T-------ACAAAT--AACATGAAAATATGAACAAA------GTG-A---GAA-CATG-AA---CAATTA-AACCTATCATAAGTTATACCTATAA-AATCAACC-------T-------AGATCAGATTTAC-CAAG-AA-GCACAAA---AT-T--TATTTGATTTTTT---TAATCTAAACATTAGGTTAT----------------------G----------T---TTCTT---AA--------------------TCT------------------------GAAAGCA----AAATAAA--TAAA--T---T-TCGC--CCAAT-AA----AGTAC-GTTTTG--CTATATTT-----TTCATTAGCGTATTGAATTTG-TTTAAGTTTGGTCATCGGCAGTAGTAATG
gi|9 : gcgagaacgcaacgaatttaccgACCATTAGTTATACCTATAA-CATCAACC-------T-------AGATCAGATTTACATAAA-AA-GCACAAC---AT-T--TA---------TT---T------------------T----------------------AATTTCATTTTT---TTTTT---AACCCTTACATTTGGTTATGTTTCTTAATCT------------------GAGAGCAAAATAAATAAA--TAAA--T---T-TCAC--TAAGCTAACAACAGTAT-GTTTTG--CTATAGAT-----GTCATTAGCATATCAAATTTG-TTTTAGTTTAGCCATTGGCAATAGTAATGtttaaaatatttttgtcttaattctttatagaagggacaaacaagtaagac
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ATAATTTAGCTAACGTTTCTGAGTGCATAAAAAGCAAAGTTTCATGACAATTTGTTTTATACTGAAGTCATTGGCAAATCAAACTTACTGGTTACGATTTGATTTAAGGTAAAGATTTTATGTTTGTAAATATTTCTGTTAATAAGGCCAGCATTAAGTAGGAAGTGATATTTGTTTTCAATAAAATTCATATTGCAAAATTAACAGTTGCTTTCTTATCTTTGAATGCTTTATCGTA
Unaligned ( gi|27 ): TTTCTTTTAAGTAAGATCAATTAAGCAAGAGAAAAAAATATTCATTGTCAACAAAATTCATATTGCAAAATTTACATGTTCATCACTTCGAAT
Alignments
lowQualScore : 11 111111111 1111111 2222222 11111111111111 11111111 33333333333333333333333333 222222222222222222222222 22222222222222222222222222 111111 222222 11 333333333 11
lowQualScore : 1 7 6 7 1 33 6 888888888 666 1 6666666 5 3 5 5 9999999 66666666666 00000000000000 22 8888888888888888 66 1 555555 1 333 1 1 333 2 5 1 88 7777777 7777777 2 2 2 00000000 2 22 22 666666 11111111111111111111111111 222 333 111111111111111111111111 33333333333333333333333333 4444 33 444 2 33 2 66 2 33 0 66666 3 6 3 666666 11 0 0 0 888888 11 3 1 1 44 22 7 1 0 0 3 2 1 4444 2 3 333333333 1 999 1 1 1 1 1 88
lowQualScore : . . . . . .. . ......... ... . ....... . . . . ....... ........... .............. .. ................ .. . ...... . ... . . ... . . . .. ....... ....... . . . ........ . .. .. ...... .......................... ... ... ........................ .......................... .... .. ... . .. . .. . .. . ..... . . . ...... .. . . . ...... .. . . . .. .. . . . . . . . .... . . ......... . ... . . . . . ..
lowQualScore : 0 3 7 3 2 22 7 555555555 444 9 2222222 4 4 0 0 4444444 55555555555 33333333333333 55 8888888888888888 11 8 555555 9 333 9 9 333 0 7 2 44 2222222 2222222 2 4 5 00000000 0 88 66 555555 22222222222222222222222222 777 999 444444444444444444444444 11111111111111111111111111 7777 11 444 7 77 7 33 7 77 5 77777 1 7 2 444444 99 7 8 8 888888 88 2 0 0 22 55 0 0 2 8 2 5 0 5555 5 2 000000000 0 333 0 0 0 0 0 00
consensus : GGGGCGAGTGTGCTTTAGTGGTAAACTATAGGTACTTATTCAGATGTTGCATCCAATCTATGGTCATTTTCACACGATCCACACACTTTTGAAAAGTGTAATCCCATTGGCTTTAGTCAAGGATCAAAGACAAAGTATTGATTTCANAAATAGACATGAAAGCATTTATTTTCCCTACATAATTTGA-GA-AAAATA---AC----ACGNTATTT-------ATAGATCA-C-A---GTATATACA----A------ATATCTTTATTCAGCAATTAAACATACA------------A-CA--TGTTTATAGCCTA--------C-------ACAAAT--A-CATGAAAATATGAATATA------GTG-A---GAA-CATG-AA---CAATTA-AACCTATCATTAGTTATACCTATAA-CATCAACC-------T-------AGATCAGATTTAC-CAAG-AA-GCACAAA---A----T-T--T--ATT---T--T-----------------------G--T---TTCTT---AATCT------------------------GAA--------------------------AGCAAAAT----AAA--TAAAT---T-TC--G-C--TAAGTTAAGGACAGTAC-GTTTTG--CTATAGAT-----GTCATTAGCATATCGAATTTG-TTTAAGTTTGGCCATCGGCAATAGTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCTGGTAAGAGCTAT-TTTAAACTTTTTCTCCATAT------CGATATTTAAGTAAGACTCTAAGTTAAAAGTGCGCTTGAAACGACAGTAAGATGATAGTCTATTCGAGTTA------TTTATTTCTGNATACNAACTTTGGTNATATATGTCTANGATT-CTGTATTTTATGTGTNCAAAGCTTGTTTGTTCTATATCATACTGATAGAGCCAAATATNTGTCATACCTAAGGTTCGNAATATTGATTTGATTTGAAAA-GC-CG-GTTTGATCCATTATAAGAATTATTNTTATCGGCATCATTTTTTTTTTTGTNTTTCATAAANTTTCTTAACAATATGTTAAGATGGAANAATTATATCATATTAATGGATTAGAATGAAACAAANGCTGTTTACNTGTGTACCTAGTTTATTCAGTGTTTAGATTAAATGATGACGTTATGAAAGTAGACACGTTTCTCAAA
Reference ( family-5166 ) : GGGGCGAGTGTGCTTTAGTGGTAAACTATAGGTACTTATTCAGATGTTGCATCCAATCTATGGTCATTTTCACACGATCCACACACTTTTGAAAAGTGTAATCCCATTGGCTTTAGTCAAGGATCAAAGACAAAGTATTGATTTCANAAATAGACATGAAAGCATTTATTTTCCCTACATAATTTGA-GA-AAAATA---AC----ACGNTATTT-------ATAGATCA-C-A---GTATATACA----A------ATATCTTTATTCAGCAATTAAACATACA------------A-CA--TGTTTATAGCCTA--------C-------ACAAAT--A-CATGAAAATATGAATATA------GTG-A---GAA-CATG-AA---CAATTA-AACCTATCATTAGTTATACCTATAA-CATCAACC-------T-------AGATCAGATTTAC-CAAG-AA-GCACAAA---A----T-T--T--ATT---T--T-----------------------G--T---TTCTT---AATCT------------------------GAA--------------------------AGCAAAAT----AAA--TAAAT---T-TC--G-C--TAAGTTAAGGACAGTAC-GTTTTG--CTATAGAT-----GTCATTAGCATATCGAATTTG-TTTAAGTTTGGCCATCGGCAATAGTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCTGGTAAGAGCTAT-TTTAAACTTTTTCTCCATAT------CGATATTTAAGTAAGACTCTAAGTTAAAAGTGCGCTTGAAACGACAGTAAGATGATAGTCTATTCGAGTTA------TTTATTTCTGNATACNAACTTTGGTNATATATGTCTANGATT-CTGTATTTTATGTGTNCAAAGCTTGTTTGTTCTATATCATACTGATAGAGCCAAATATNTGTCATACCTAAGGTTCGNAATATTGATTTGATTTGAAAA-GC-CG-GTTTGATCCATTATAAGAATTATTNTTATCGGCATCATTTTTTTTTTTGTNTTTCATAAANTTTCTTAACAATATGTTAAGATGGAANAATTATATCATATTAATGGATTAGAATGAAACAAANGCTGTTTACNTGTGTACCTAGTTTATTCAGTGTTTAGATTAAATGATGACGTTATGAAAGTAGACACGTTTCTCAAA
gi|1 : GGGGCGAGTGTGCTTTAGTGGTAAACTATAAGTACTTATTCAGATGTTGCATCCAATCTATGGTCATTTTCACACGATCCACACACTTTTGAAAAGTGTAATCCCATTGGCTTTAGTCAAGGATCAAAGACAAAGTATTGATTTCATAAATAGACATGAAAGCATTTATTTTCCCTACATAATTTGA-GA-AAAATA---AC----ACACTATTT-------ATAGATCA-CCA---GTATATACA----A------ATGTCTTTATTTAGCAATTAAGCATACA------------A-CA--TGTTTATAGCCTA--------C-------ACAAAT--A-CATGAAAATATGAATATA------GCG-A---GAA-AATG-AA---CAATTG-AACTTATCATTAGTTATACCTATAA-CACCAACT-------TTATATATAGATCAGATTTAC-CAAG-AA-GCACAAA---A----T-T--T--ATT---T--T-----------------------G--T---TTTTT---AATCT------------------------GAA--------------------------AGCAAAAT----AAA--TAAAT---T-TC--G-C--TAAGTTATGGACAGTAC-GTTTTG--CTATAGAT-----ATCATTAGCATATGGAATTTG-TTTAAGTTTAGTCATCGGCAATAGTTATG
gi|1 : AATCTGGTAAGAGCTAT-TTTAAACTTTTTCTCCATAT------CACAATCTAAGTAGGACTCTAAATTAAAAGTGCACTTGAAACGACAGTAAGATGATAGTCTATTCAAGTTA------TTTATTTCTGAATACACACTTTGGTTATATATGTCTAAGATT-CTGTATTTTATGTGTGCAAAGCTTGTTTGTTCTATATCATACTGATAGAGCCAAATGTCTGTCATACCTAAGGTTTGTAATATTGATTTGATTTGAAAA-GC-CAAGTTTGATCCATTATAAGAATTATTATTATCAGCATCATTTTTTTT---GTCTTTCATAAATTTTCTTAACAATATGTTAAGATGGAAGAATTATATCATATTAATGGATTAGAATGAAACAAATGCTGTTTACTTGTGTACCTAGTTTATTCAGTGTTTAGATTAAATGATGACGTTATGAAAGTAGACACATTTCTCAAAgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatctggtaagagctattttaaactttttctccatatcacaatctaagtaggactctaaattaaaagtgcacttgaaacgacagtaagatgatagtctattcaagttatttatttctgaatacacactttggttatatatgtctaagattctgtattttatgtgtgcaaagcttgtttgttctatatcatactgatagagccaaatgtctgtcatacctaaggtttgtaatattgatttgatttgaaaagccaagtttgatccattataagaattattattatcagcatcattttttttgtctttcataaattttcttaacaatatgttaagatggaagaattatatcatattaatggattagaatgaaacaaatgctgtttacttgtgtacctagtttattcagtgtttagattaaatgatgacgttatgaaagtagacacatttctcaaa
gi|10 : ggggcgagtgtgctttagtggtaaactataagtacttattcagatgttgcatccaatctatggtcattttcacacgatccacacacttttgaaaagtgtaatcccattggctttagtcaaggatcaaagacaaagtattgatttcataaatagacatgaaagcatttattttccctacataatttgagaaaaataacacactatttatagatcaccagtatatacaaatgtctttatttagcaattaagcatacaacatgtttatagcctacacaaatacatgaaaatatgaatatagcgagaaaatgaacaattgaacttatcattagttatacctataacaccaactttatatatagatcagatttaccaagaagcacaaaatttattttgttttttaatctgaaagcaaaataaataaatttcgctaagttatggacagtacgttttgctatagatatcattagcatatggaatttgtttaagtttagtcatcggcaatagttatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATACA----A------ATATCTCTGTTCTGCAATTAAATATATA------------A-CA--TCTTTATAACCTA--------CACTAGGAACAAAT--A-CAT
gi|10 : a--T-----------------------G--T---TTGTA---AATCT------------------------GAC--------------------------AGCAAAAT----AAA--GAAAT---T-TC--G-C--TAATGTAAGGAC------GTTTTG--CTATAGAT-----GCCATTAGCATATCGACATTG-TTTAAACTTGACCATCGGCAATAGTAATtacaacacctcatcaaaggtgtcatcaaataaccttaaattgtattaagcataaacatgaagctttttttcatgtttgtataaaatgcattattaattaggtgatgtttgtaaatctgacagcaaaataaagaaatttcgctaatgtaaggacgttttgctatagatgccattagcatatcgacattgtttaaacttgaccatcggcaatagtaattatcaattcttaattcgtcatagaagagacaaacaagcaacaca
gi|11 : aatacaaatatctctgttctgcaattaaatatataacatctttataacctacactaggaacaaatacattacaacacctcatcaaaggtgtcatcaaataaccttaaattgtattaagcataaacatgaagctttttttcatgtttgtataaaatgcattattaattaggtgaTCTAAAT------CGACATTTAATAAATACTCTAGGTTAAAATTGTGCTTTAAATGACAGTA------T--TTTTTTCGAATTACATGTATTTACTTCTGACT-CAAACATTGGAGATATATCTCT-TGATTTCAGTGTTTTATGTATTCAAAGCTATTTTGTTCGATATT-TATT-ATGAAGCCCTATACGTGTCATACCTGAGGTCCAAAAACTTGATTT--TTTAAAAT-GCACA-ATTTGATTAATCATAACAATTATTTTTATTAGCGTCATTTATGTTTTtatcaattcttaattcgtcatagaagagacaaacaagcaacaca
gi|12 : caCTTTATTCAGCAATTAAATATACA------------A-CA--TGTTTAAAGTATA--------C-------ATAAAT--A-CATGAAACTATGAATATA------GTG-A---GAA-CATG-CA---CAATTA-AACCTATCATTAGTTATACCAATAA-CATCAACC-------T-------AGATCAGATCTAC-CAAG-AA-ACACAAA---A----T-T--T--ATT---T--G-----------------------C--T---TTTTTAAAAATCTATACATTTGGTTGTTTCTTAATCTGAA--------------------------AGTAAAAT----TAA--TAAAT---T-TC--G-C--TAAGTTAAGAACAGTAC-TTTTTG--CTATAGTT-----GTCATTAGAATATCGAATTGT-TTTAAGTTTGGCCATCAGCAATAGagcaatggtgtaatattttaatcgcaatatctaaagtcataatttaatcata
gi|13 : ATATA----A------ATATCTTTATTCAGCAACTAAACATACA------------G-CA--TGTTTATAGCCCA--------C-------ACAAAT--A-CATGAAAATATGAATATA------ATG-A---GAA-CATG-AA---CAATTT-AACCTATCATTAGTGATACCTATGA-TATTAGC------------------ATT-GATTTAC-CAAG-AA-TTACGAA---C----T-T--T--ATT---T--T-----------------------A--T---TTTT
gi|13 : --T-----------------------G--T---TTCTT---AATCT------------------------GAA--------------------------AGCAAAAT----AAA--TAAAT---T-TC--G-C--TAAGTTAAAGAAAGTAC-GTTTTG--CTTAAGAT-----TCCAATAGCATATCGGATTTG-Tgtttgtatttacatttttatctttacatatggtggtgtttcttaatctgaaagcaaaataaataaatttcgctaagttaaagaaagtacgttttgcttaagattccaatagcatatcggatttgt
gi|14 : atataaatatctttattcagcaactaaacatacagcatgtttatagcccacacaaatacatgaaaatatgaatataatgagaacatgaacaatttaacctatcattagtgatacctatgatattagcattgatttaccaagaattacgaactttattttatttttgtttgtatttacatttttatctttacatatggtggATACA----A------ATATCTTTATTCAGCAATTAAACATACA------------A-TA--TGTTTATAGCCTG--------C-------ACAAAT--AACATGAAAATATTAATATA------GCG-A---GAA-CATG-AA---CAGTTA-AACATATGATAAGTTATACCTATAA-CAT-AACC-------T-------AGATCAGAGTTAC-CAAG-AA-GCACAAA---ATGTAT-T--TGAATT---T--TTTAAAATCTATACATAAGGTTATG--T---TTCTT---AATCT------------------------GAA--------------------------GGCAACAT----AAA--TATAT---
gi|15 : tgatatacaaTATGTACA----T------ATACATTTATTCAGCAAT-AAACATACA------------G-CACCTGTATATGGCTTAATTTAATAT-------ACACAT--A-TATGAAAATATGAAGACA------GTA-A---GA---ATA-AC---CAATCA-AATCaaacagtataggtgttgaaaacataacgtttcattaattagaattcagttgtttt
gi|15 : --T-----------------------G--T---TTCTA---AAATT------------------------GAA---------------------------GCAAAAC----AAAATTATAT---A-AC--A-C--TAAATTCAAGACAGTAT-ATTTTT--CTCTTGAT-----ATCATTAGCGTATagatttcatagctgggaaacattttttttaattcttgtttttcaaaataaaaaaagaatttacacctggtataattatattaggtcatgtttctaaaattgaagcaaaacaaaattatataacactaaattcaagacagtatatttttctcttgatatcattagcgtat
gi|17 : tatgtacatatacatttattcagcaataaacatacagcacctgtatatggcttaatttaatatacacatatatgaaaatatgaagacagtaagaataaccaatcaaatcagatttcatagctgggaaacattttttttaattcttgtttttcaaaataaaaaaagaatttacacctggtataattatattaggtcaA--TGTTTATAGCCTA--------C-------ACAAA-----CATGCAAATGTGAGTATA------ATG-A---GGA-CAAG-AA---CAATTA-AACCTATCGTCAGTTATACATATAA-----AATC-------T-------AGATCAGATTTAC-CAAG-AA-GCACAAACTTA----T-T--T--ATT---TA-T-----------------------G--T---TT
gi|17 : CAAAC--A----T-T--A--GTTG--T--T-----------------------G--C---TTCTC---AATCT------------------------GAA--------------------------AGCAAAAT----AAA--gcattaactgtttttttagaccaaacattagttgttgcttctcaatctgaaagcaaaataaagatatgtataatgtataaacat
gi|18 : atgtttatagcctacacaaacatgcaaatgtgagtataatgaggacaagaacaattaaacctatcgtcagttatacatataaaatctagatcagatttaccaagaagcacaaacttatttatttatgtttgcattaactgtttttttagacATATACA----A------AAATCTTTGTTCAACAATTAAACAAAGA------------A-CA--TGTT----------------------------AAT--A-CATTTAAATATAATTATA------GTG-A---GTA-TATA-AA---CAATCA-AACACATTATTAGTTATACATATCG-AATCCACC-------T-------AACTCAGATTTAC-TAAG-AA-ACACAAA---A----T-T--T--ATT---T--T-----------------------A--T---TTgatatgtataatgtataaacat
gi|19 : atacaaAAATAG---TGAAA--------TTTCCC---ATAAATTG--GA-TAAATG---TC----AAATCA----------AAAAATCA-T-A-------ATACA----G------ATATCTTTGTTCAGCAATAAAACATACA------------------TATTTATAGCCTA--------C-------ACAAAT--A-CATGGAAATATGAATATA------GTGNN---NNN-NNNN-NA---TATTTATAGCCTAatgtttgtatttccttttttttgttattatcatgcattatatatta
gi|19 : aattgacggga-AAAACAT--AC----A---TATTT-------ATAGCCTA-C-ACAAATACATGGA----A------ATATGAATAT--AG----TGNNNNNNNN------------N-NA--TATTTATAGCCTA--------C-------ACAAAT--A-CATGGAAATATGAATATA------GTG-A---GAA-TATG-AA---CAcacaaatacatggaaatatgaatatagtgagaatatgaaca
gi|2 : aattgacgggaaaatagtgaaatttcccataaattggataaatgtcaaatcaaaaaatcataatacagatatctttgttcagcaatGGGGCGAGTGTGCTTTAGTAGTAAACTATAGGTACTTATTCAGATGTTGCATCCAATCTATGGTCATTTTCACACGATTCACACACTTTTGAAAAGTGTAATCCCATTGGCTTTAGTCAAGGATCAAAGACAAAGTATTGATTTCAGAAATAGACATGAAAGCATTTATTTTCCCTACATAATTTGA-GA-AAAATA---AC----ACAATGTTT-------ATAGATCACC-A---GTATATACA----A------ATGTCTTTATTCAGCAATTAAGCATACA------------A-TA--TGTTTATAGCCTA--------C-------ACAAAT--A-CATGAAAATATGAATATA------GTG-G---GAA-CATG-AA---CAATTG-AACTTATCATTAGTTATACCCATAA-CACCAACTTTATATAT-------AGATCAGATTAAC-CAAG-AA-GCACAAA---A----T-T--T--ATT---T--T-----------------------AT-T---TTTTT---AATCT------------------------GAA--------------------------AGCAAAAT----AAA--TAAAT---T-TC--G-C--TAAGTTAAGGACAGTAC-ATTTTG--CTATAGAT-----GTCATTA-CATATGGAATTTG-TTTAAGTTT
gi|2 : AACCTAGTAAGAGCTAT-TTTAAACTTTTTCTTCATAT------CACAATCTAAGTAGGACTCTAAGTTAAAAGTGCACTTGAAACGACAGTAAGATGATAGTCTATTCAAGTTA------TTTATTTCTGCATACCAACTTTGGTTATATATGTCTAAGATT-CTGTATTTTATGTGTGCAAAGCTTGTTTGTTCTATATCATACTGATAGAGCCAAATATCTGTCATACCTAAGGTTTGTTATATTGATTTGATTTG----------------ATCCATTATAAGAATTATTATTATCGACATCATTTTTTTTTTTGTGTTTCATAAAGTTTCTTAACAATATGTTAAGATGGAACAATTATATCATATTAATGGATTAGAATGAAACAAAGGCTGTTTACATGTGTACCTAGTTTATTCAGTGTTTAGATTAAATGATGACGTTATGAAAGTAG--ACGTTTCTCAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttgccgctttctttggtgagattttcggaagataacctagtaagagctattttaaactttttcttcatatcacaatctaagtaggactctaagttaaaagtgcacttgaaacgacagtaagatgatagtctattcaagttatttatttctgcataccaactttggttatatatgtctaagattctgtattttatgtgtgcaaagcttgtttgttctatatcatactgatagagccaaatatctgtcatacctaaggtttgttatattgatttgatttgatccattataagaattattattatcgacatcatttttttttttgtgtttcataaagtttcttaacaatatgttaagatggaacaattatatcatattaatggattagaatgaaacaaaggctgtttacatgtgtacctagtttattcagtgtttagattaaatgatgacgttatgaaagtagacgtttctcaaa
gi|20 : ggggcgagtgtgctttagtagtaaactataggtacttattcagatgttgcatccaatctatggtcattttcacacgattcacacacttttgaaaagtgtaatcccattggctttagtcaaggatcaaagacaaagtattgatttcagaaatagacatgaaagcatttattttccctacataatttgagaaaaataacacaatgtttatagatcaccagtatatacaaatgtctttattcagcaattaagcatacaatatgtttatagcctacacaaatacatgaaaatatgaatatagtgggaacatgaacaattgaacttatcattagttatacccataacaccaactttatatatagatcagattaaccaagaagcacaaaatttattttatttttttaatctgaaagcaaaataaataaatttcgctaagttaaggacagtacattttgctatagatgtcattacatatggaatttgtttaagtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttgccgctttctttggtgagattttcggaagatA-AAGATATCTAT----GTGATATAT-------ATA---CA-T-A----TATATATATGTTA------ATATCTTTAATCATCAATTAAAC-TATA------------A-CA--GGTTTATAGCCTG--------C-------ACTAAT--A-CATAAAAGTATGAATATACATATTGTG-A---GAC-TATA-AA---CAGATA-AACCCATTATTCGTTGTACTTATCA-AATCCACT-------T-------CAACCAGATTTAC-C
gi|21 : ttagaatgcATACA----G------GTATCTCTATACAGCAATTGATCATATA------------A-CA--TGTTTAAAGCCTA--------C-------ACAAAT--G-CATGAAAACA-------A------CTG-A----AA-CTTGTAT---TAACTA-CACCTA-CAT--G-------TATCA-CATCAACC-------T-------AAATCAGATTTAC-TAAG-AC-GCACAAA---T----T-T--T--ATT---C--T-----------------------T--T---Tg
gi|22 : atacaaT-------ATAAACTA-C-A---A---ATACA----A------ATATTTTTA----ACAA------ATGC---------------CA--TCTTTATATCTTG--------C-------GCAAAG--A-CATGAAAATATGGAGATA------GTG-A---GAT-TAAA-AA---CAATTA-AACCTATTACTTGTTATATTCATAA-----AATC-------T-------AAATCTGATTTAC-AAAG-Aaatttttttatgcgtttacttactgttt
gi|23 : gaaTATA----G------ATGTATTTATTCAGCAATTAAATAT----------------------GTTTATAGCCTA--------C-------A-ACAT--A--GTGAAAATATGAGTATA------GTG-A---GAA-CATG-A---------A-AACATGTCA--A---------------ATCAATC-------T-------AAATCATACTAAC-CAAG-AA-ACTCAAA---A----T-TCCT--ATT---t
gi|24 : ataaag---TTTTT---AATCT------------------------GAA---------------------------TTAAAAA----AAA---AAAT---T-TTTTG-C--TAAATTAAGGACAGTAT-GTTTTG--TTATAGCT-----TTCATTAGTATATCAAATTTG-TTTAGGattc
gi|25 : ttttactttattttgtataaaatccatgattcgtaaggtgattc---A----T-T--T--ATTAGGT--T-----------------------G--TGTTTTTTT---AATCT------------------------GAA--------------------------AGCAAAAT----AAA--CAAAT---T-TC--G-T--TAAGTTTAGAACACAACAGTATTGAACTAGAGGTTAGTAGTCATT
gi|26 : ttgattttttaaaatctATACA----C------ATAT-TTTAT-AAGAACTCAAATATATA------------A-TA--TGTTTATAACCTA--------A-------ACAAAT--G-CATGAA------AATGTA------ATG-ATTTGAA-CAT---A---TTATTA-CATCTACCg
gi|28 : aaatacaaTT---A--T-----------------------G--T---TTCTT---AATCT------------------------GAA--------------------------AGCAAAAT----ATA--TA
gi|3 : cagcatgttattttttttatttttatttttttaatatatacattaagACATACA----A------ATATCTTTATTCAGCAATTAAACATACA------------A-TA--TGTTTATAGCCTA--------C-------ACAAATA-A-CATGAAAATATGACTATA------GTG-A---GAA-CATG-AA---CAATTG-AACCTACCATAAGTTATA-CTATAT-CATCAACC-------T-------AGATCAGATTTAC-CAAGTAA-G-ACAAATGTA----TCT--T--ACT---T--TTTCGGTATATAAATTAGGTTAT-G--T---TTATT---AATCT------------------------GAA--------------------------AGCAAAAT----AAA--TACAT---T-TT--G-CT-TAAGTAAAGAACAGTAC-GTTTTG--CTAAAGTT-----GTC-TTAGCATATCGAATTCG-CTTTAGTTTGGCCATCAGCAGCAGTAATG
gi|3 : acAATCAGGTAAGAGTTAT-TATAAACTGTGTTTATATAT------CGATATTTAAGTTAGACTCTAACTTAAAAGTGTGCTTGAAACGACAGTAAGATGAAAGTCTATTCGAATTA------TTTGTTTTTGTGTAACAAGTTTGGTGATATATGTCTATGATT--TGT-TTTTATGTGTTCAAAACTTATTTGTTCCATATCATACTGATAGAGCAAAATATGTGTCATATCTAAGGTTTTGGATATTGATTTGATTTGAAAATCC-CG-GTTTGATCCATTATAAGAATTATTTTTATCGGTATCATtttaaaatattttgtcttaattctttaaagaatggaccaacaagtaacaagtgatacttattttcaaaaaaaaaatatgttacaaaaattacctatcctttcttttctttgaatagtttcacatcattcgctttctatggcgagaatataggaagtaaatatcaatcaggtaagagttattataaactgtgtttatatatcgatatttaagttagactctaacttaaaagtgtgcttgaaacgacagtaagatgaaagtctattcgaattatttgtttttgtgtaacaagtttggtgatatatgtctatgatttgtttttatgtgttcaaaacttatttgttccatatcatactgatagagcaaaatatgtgtcatatctaaggttttggatattgatttgatttgaaaatcccggtttgatccattataagaattatttttatcggtatcat
gi|4 : acacatacaaatatctttattcagcaattaaacatacaatatgtttatagcctacacaaataacatgaaaatatgactatagtgagaacatgaacaattgaacctaccataagttatactatatcatcaacctagatcagatttaccaagtaagacaaatgtatcttactttttcggtatataaattaggttatgtttattaatctgaaagcaaaataaatacattttgcttaagtaaagaacagtacgttttgctaaagttgtcttagcatatcgaattcgctttagtttggccatcagcagcagtaatgtttaaaatattttgtcttaattctttaaagaatggaccaacaagtaacaagtgatacttattttcaaaaaaaaaatatgttacaaaaattacctatcctttcttttctttgaatagtttcacatcattcgctttctatggcgagaatataggaagtaaatatcATACA----A------CTATGTTTATTCAGCAATTAAACATACATATGTATCCTGTATCC--TGTTTATAGCCTA--------C-------ACACAT--A-CTTGAAAATATGAATATA------GTG-A---GAA-TATG-AA---CAATTT-AACCTAGTA----TCATACCTATCA-AATCAACC-------T-------GAATCAGATTTAC-CAAG-AA-GCACAAG---A----T-T--T--ATT---T--T-----------------------A--T---TT
gi|4 : atacaa----T-T--T--AGT---TAAT-----------------------G--T---TTCTT---GATCT------------------------GAA--------------------------ATCAAGCT----AAA--TTAAT---T-TC--G-CGCTGAATTTAAGACAGTAC-GTTT-G--CTATAGAT-----GTCATTAGCATATCGAATTTG-TTTAGGTTTGGCCATCGGatatttgtatttacttttaattttttcagatctatactttagttaatgtttcttgatctgaaatcaagctaaattaatttcgcgctgaatttaagacagtacgtttgctatagatgtcattagcatatcgaatttgtttaggtttggccatcggttaaagttgtgttttaaatgtttttttgtcttaattatttattaaagggacaatcacgtaggaaattatattcattttcaataaattcgtgctacaaaattaacatgtccttttatttctttgaatattttcgtattaatcgtattctatggcgaaattatgggaggataatctaaatttggtaagagctatttgattttttttctccatataaatatccatatgtaaacaaaactcaaagttcaaaatgtacttgaaatgacagtag
gi|4 : atacaaatacaactatgtttattcagcaattaaacatacatatgtatcctgtatcctgtttatagcctacacacatacttgaaaatatgaatatagtgagaatatgaacaatttaacctagtatcatacctatcaaatcaacctgaatcagatttaccaagaagcacaagatttattttatttatatttgtatttacttttaattttttcagatctatacAATTTGGTAAGAGCTAT-TTGATTTTTTTTCTCCATATAAATATCCATATGTAAACAAAACTCAAAGTTCAAAATGTACTTGAAATGACAGTAttaaagttgtgttttaaatgtttttttgtcttaattatttattaaagggacaatcacgtaggaaattatattcattttcaataaattcgtgctacaaaattaacatgtccttttatttctttgaatattttcgtattaatcgtattctatggcgaaattatgggaggataatctaaatttggtaagagctatttgattttttttctccatataaatatccatatgtaaacaaaactcaaagttcaaaatgtacttgaaatgacagtag
gi|5 : atacaaatacaactatgtttattcagcaattaaacatacatatgtatcctgtatcctgtttatagcctacacacatacttgaaaatatgaatatagtgagaatatgaacaatttaacctagtatcatacctatcaaatcaacctgaatcagatttaccaagaagcacaagatttattttatttatatttgtatttacttttaattttttcagatctatactttagttaatgtttcttgatctgaaatcaagctaaattaatttcgcgctgaatttaagacagtacgtttgctatagatgtcattagcatatcgaatttgtttaggtttggccatcggttaaagttgtgttttaaatgtttttttgtcttaattatttattaaagggacaatcacgtaggaaattatattcattttcaataaattcgtgctacaaaattaacatgtccttttatttctttgaatattttcgtattaatcgtattctatggcgaaattatgggaggataatctaATACA----ATTATCTATATCTATATTCGGCAATTAAAAATACA------------A-CA--TGTTTATATCC-----------------------------ATGAAAATATAAATAAA------GTG-A---GAA-TATG-AA---CAATTA-AACCTATCATTAGTTATA-CTAAAATCATCAACC-------T-------AGATAAGATTTAC-AAAG-AA-GCACAAC---A----T-T--T--ATT---T--G-----------------------A--T---TTTTg
gi|5 : --ATT---G--T-----------------------G--T---TTTTT---AATCT------------------------GAA--------------------------AGGAAAAT----AAA--TAAATAAATATC--G-C--TAAG-TGAGAACATTAC-GTTTTG--AAATAGAT-----GTCATTTACATATCGAA-------TAAGTTTGGCCATCGGCAgttgtatttacttttttttaaatctatacgttagattgtgttttttaatctgaaaggaaaataaataaataaatatcgctaagtgagaacattacgttttgaaatagatgtcatttacatatcgaataagtttggccatcggcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttgccgctttctatggcgagatatgggaggatctaaatctggtcagagctatttaaactttttctccatatcgctattaaagtaagactctaagtaaaaagtg
gi|5 : atacaattatctatatctatattcggcaattaaaaatacaacatgtttatatccatgaaaatataaataaagtgagaatatgaacaattaaacctatcattagttatactaaaatcatcaacctagataagatttacaaagaagcacaacatttatttgatttttgttgtatttacttttttttaaatctatacgttagAATCTGGTCAGAGCTAT-TT-AAACTTTTTCTCCATAT------CGCTATTAAAGTAAGACTCTAAGTAAAAAGTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttgccgctttctatggcgagatatgggaggatctaaatctggtcagagctatttaaactttttctccatatcgctattaaagtaagactctaagtaaaaagtg
gi|6 : atacaattatctatatctatattcggcaattaaaaatacaacatgtttatatccatgaaaatataaataaagtgagaatatgaacaattaaacctatcattagttatactaaaatcatcaacctagataagatttacaaagaagcacaacatttatttgatttttgttgtatttacttttttttaaatctatacgttagattgtgttttttaatctgaaaggaaaataaataaataaatatcgctaagtgagaacattacgttttgaaatagatgtcatttacatatcgaataagtttggccatcggcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttgccgctttctatggcgagatatgggaggatctaCATAGCCTGAAGATAGAATA---ACCGTAACGGTATTTGTATAAAATATATGA-C-A---G---ATACA----A------ATATATTTATTCAGTAATTAAACAT-------------------------TATAGCCTA--------T-------ACAAAT--A-CATGAAGGTATGGAGATA------GTG-A---GAA-T-TA-AA---CAATTT-AACATATTACAAGTTTTACCTATCA-AATCAACC-------T-------AAATCAGATTTAT-CAAA-AA-GCGTGAA---T----T-C--C--ATT---T--T-----------------------C--T---T
gi|6 : ATTAAACAATTTAACATATT------------A-CA--AGTTT-TA-CCTA--------T--------CAAATCAA-CCT--AAAT-CAGATTTA------TCA-A---AAAGCGTG-AATTCCATTTT---CTTATCAT-----ATACTT-------TTTACC-------T----------TTTTATTGAT-AAAG-AATGCGTTA-----------T--T--GTT---A--T-----------------------G--T---TTCTT---AATCT------------------------GAA--------------------------ATCAAACT----G--------T---T-TC-------TAAATTAAGGACAGTAC-GTATTG--TTATAGAT-----GTTA-AAGCA--------TTGCCTTAAACTTGGCCATCAGCAATAGatcatatactttttacctttttattgataaagaatgcgttattgttatgtttcttaatctgaaatcaaactgtttctaaattaaggacagtacgtattgttatagatgttaaagcattgccttaaacttggccatcagcaatagatatgtttaaaacacgtctgtgttaattctttattaaagggacaaaacaagtaataaatggtattcgttttcaataaaatgcatgttacaaaattgacatatcccaccatttctttaaatattttgtcaaatcgtcatcatgttttat
gi|7 : catagcctgaagatagaataaccgtaacggtatttgtataaaatatatgacagatacaaatatatttattcagtaattaaacattatagcctatacaaatacatgaaggtatggagatagtgagaTT---A--T-----------------------G--T---TTCTT---AATCT------------------------GAA--------------------------AGCAAAAT----AAA--TAAAT---T-TC--A-T--TAAGTAAAGAACAGTAC-GTATTG--TTGTTATT-----GTCATTATTATATCGAATTTG-TTTAAGTTTGGCCATCGGCAGTTGTAACGatatgtttaaaacacgtctgtgttaattctttattaaagggacaaaacaagtaataaatggtattcgttttcaataaaatgcatgttacaaaattgacatatcccaccatttctttaaatattttgtcaaatcgtcatcatgttttat
gi|7 : attcttttaaaaatcgaaacattaggAATGTGGTAAGAGCTATATTTAAACGTTTTCTCCATAT------CGATATTTAAGCAAGACTGTAAGTTTAAAGTGTGTTTGAAACGACAGTAAGATGATAGTCTATTCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctaccactttctatggcgagatgatgggaggattatctaaatgtggtaagagctatatttaaacgttttctccatatcgatatttaagcaagactgtaagtttaaagtgtgtttgaaacgacagtaagatgatagtctattc
gi|8 : attcttttaaaaatcgaaacattaggttatgtttcttaatctgaaagcaaaataaataaatttcattaagtaaagaacagtacgtattgttgttattgtcattattatatcgaatttgtttaagtttggccatcggcagttgtaacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctaccactttctatggcgagatgatgggaggattatcta----ACGGTATAT-------ACAAAT-A-C-A---A---ATACT----A------ATATCTTTATTCAGCAATTAAACATAC-------------A-CA--TGTTTATAGCCTA--------T-------ACAAATA-A-CATGAAAATATGAACAAA------GTG-A---GAA-CATG-AA---CAATTA-AACCTATCATAAGTTATACCTATAA-AATCAACC-------T-------AGATCAGATTTAC-CAAG-AA-GCACAAA---A----T-T--T--A-T---T--T-----------------------GATT---TTTTT---AATCT------------------------AAACATTAGGTTATGTTTCTTAATCTGAAAGCAAAAT----AAA--TAAAT---T-TC--GCC--CAA--TAA----AGTAC-GTTTTG--CTATATTT-----TTCATTAGCGTATTGAATTTG-TTTAAGTTTGGTCATCGGCAGTAGTAATG
gi|9 : gcgagaacgcaacgaatttaccgACCATTAGTTATACCTATAA-CATCAACC-------T-------AGATCAGATTTACATAAA-AA-GCACAAC---A----T-T--T--ATT---T--TA----------------------A--T---TTCtttaaaatatttttgtcttaattctttatagaagggacaaacaagtaagac
gi|9 : ---A----T-T--T--GGT---TA-T-----------------------G--T---TTCTT---AATCT------------------------GAG--------------------------AGCAAAATAAATAAA--TAAAT---T-TC--A-C--TAAGCTAACAACAGTAT-GTTTTG--CTATAGAT-----GTCATTAGCATATCAAATTTG-TTTTAGTTTAGCCATTGGCAATAGTAATGattttttttttaacccttacatttggttatgtttcttaatctgagagcaaaataaataaataaatttcactaagctaacaacagtatgttttgctatagatgtcattagcatatcaaatttgttttagtttagccattggcaatagtaatgtttaaaaatatttttgccttaattctttaaagaagggacaaacaaataagataaagtaatcaaacccgattatttgatctgatttcacatcatatctttaattactctgttaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ATAATTTAGCTAACGTTTCTGAGTGCATAAAAAGCAAAGTTTCATGACAATTTGTTTTATACTGAAGTCATTGGCAAATCAAACTTACTGGTTACGATTTGATTTAAGGTAAAGATTTTATGTTTGTAAATATTTCTGTTAATAAGGCCAGCATTAAGTAGGAAGTGATATTTGTTTTCAATAAAATTCATATTGCAAAATTAACAGTTGCTTTCTTATCTTTGAATGCTTTATCGTA
Unaligned ( gi|27 ): TTTCTTTTAAGTAAGATCAATTAAGCAAGAGAAAAAAATATTCATTGTCAACAAAATTCATATTGCAAAATTTACATGTTCATCACTTCGAAT
Alignments
lowQualScore : 11 111111111 1111111 2222222 11111111111111 11111111 33333333333333333333333333 222222222222222222222222 22222222222222222222222222 111111 222222 11 333333333 11
lowQualScore : 1 7 6 7 1 33 6 888888888 666 1 6666666 5 3 5 5 9999999 66666666666 00000000000000 22 8888888888888888 66 1 555555 1 333 1 1 333 2 5 1 88 7777777 7777777 2 2 2 00000000 2 22 22 666666 11111111111111111111111111 222 333 111111111111111111111111 33333333333333333333333333 4444 33 444 2 33 2 66 2 33 0 66666 3 6 3 666666 11 0 0 0 888888 11 3 1 1 44 22 7 1 0 0 3 2 1 4444 2 3 333333333 1 999 1 1 1 1 1 88
lowQualScore : . . . . . .. . ......... ... . ....... . . . . ....... ........... .............. .. ................ .. . ...... . ... . . ... . . . .. ....... ....... . . . ........ . .. .. ...... .......................... ... ... ........................ .......................... .... .. ... . .. . .. . .. . ..... . . . ...... .. . . . ...... .. . . . .. .. . . . . . . . .... . . ......... . ... . . . . . ..
lowQualScore : 0 3 7 3 2 22 7 555555555 444 9 2222222 4 4 0 0 4444444 55555555555 33333333333333 55 8888888888888888 11 8 555555 9 333 9 9 333 0 7 2 44 2222222 2222222 2 4 5 00000000 0 88 66 555555 22222222222222222222222222 777 999 444444444444444444444444 11111111111111111111111111 7777 11 444 7 77 7 33 7 77 5 77777 1 7 2 444444 99 7 8 8 888888 88 2 0 0 22 55 0 0 2 8 2 5 0 5555 5 2 000000000 0 333 0 0 0 0 0 00
consensus : GGGGCGAGTGTGCTTTAGTGGTAAACTATAGGTACTTATTCAGATGTTGCATCCAATCTATGGTCATTTTCACACGATCCACACACTTTTGAAAAGTGTAATCCCATTGGCTTTAGTCAAGGATCAAAGACAAAGTATTGATTTCANAAATAGACATGAAAGCATTTATTTTCCCTACATAATTTGA-GA-AAAATA---AC----ACGNTATTT-------ATAGATCA-C-A---GTATATACA----A------ATATCTTTATTCAGCAATTAAACATACA------------A-CA--TGTTTATAGCCTA--------C-------ACAAAT--A-CATGAAAATATGAATATA------GTG-A---GAA-CATG-AA---CAATTA-AACCTATCATTAGTTATACCTATAA-CATCAACC-------T-------AGATCAGATTTAC-CAAG-AA-GCACAAA---A----T-T--T--ATT---T--T-----------------------G--T---TTCTT---AATCT------------------------GAA--------------------------AGCAAAAT----AAA--TAAAT---T-TC--G-C--TAAGTTAAGGACAGTAC-GTTTTG--CTATAGAT-----GTCATTAGCATATCGAATTTG-TTTAAGTTTGGCCATCGGCAATAGTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCTGGTAAGAGCTAT-TTTAAACTTTTTCTCCATAT------CGATATTTAAGTAAGACTCTAAGTTAAAAGTGCGCTTGAAACGACAGTAAGATGATAGTCTATTCGAGTTA------TTTATTTCTGNATACNAACTTTGGTNATATATGTCTANGATT-CTGTATTTTATGTGTNCAAAGCTTGTTTGTTCTATATCATACTGATAGAGCCAAATATNTGTCATACCTAAGGTTCGNAATATTGATTTGATTTGAAAA-GC-CG-GTTTGATCCATTATAAGAATTATTNTTATCGGCATCATTTTTTTTTTTGTNTTTCATAAANTTTCTTAACAATATGTTAAGATGGAANAATTATATCATATTAATGGATTAGAATGAAACAAANGCTGTTTACNTGTGTACCTAGTTTATTCAGTGTTTAGATTAAATGATGACGTTATGAAAGTAGACACGTTTCTCAAA
Reference ( family-5166 ) : GGGGCGAGTGTGCTTTAGTGGTAAACTATAGGTACTTATTCAGATGTTGCATCCAATCTATGGTCATTTTCACACGATCCACACACTTTTGAAAAGTGTAATCCCATTGGCTTTAGTCAAGGATCAAAGACAAAGTATTGATTTCANAAATAGACATGAAAGCATTTATTTTCCCTACATAATTTGA-GA-AAAATA---AC----ACGNTATTT-------ATAGATCA-C-A---GTATATACA----A------ATATCTTTATTCAGCAATTAAACATACA------------A-CA--TGTTTATAGCCTA--------C-------ACAAAT--A-CATGAAAATATGAATATA------GTG-A---GAA-CATG-AA---CAATTA-AACCTATCATTAGTTATACCTATAA-CATCAACC-------T-------AGATCAGATTTAC-CAAG-AA-GCACAAA---A----T-T--T--ATT---T--T-----------------------G--T---TTCTT---AATCT------------------------GAA--------------------------AGCAAAAT----AAA--TAAAT---T-TC--G-C--TAAGTTAAGGACAGTAC-GTTTTG--CTATAGAT-----GTCATTAGCATATCGAATTTG-TTTAAGTTTGGCCATCGGCAATAGTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCTGGTAAGAGCTAT-TTTAAACTTTTTCTCCATAT------CGATATTTAAGTAAGACTCTAAGTTAAAAGTGCGCTTGAAACGACAGTAAGATGATAGTCTATTCGAGTTA------TTTATTTCTGNATACNAACTTTGGTNATATATGTCTANGATT-CTGTATTTTATGTGTNCAAAGCTTGTTTGTTCTATATCATACTGATAGAGCCAAATATNTGTCATACCTAAGGTTCGNAATATTGATTTGATTTGAAAA-GC-CG-GTTTGATCCATTATAAGAATTATTNTTATCGGCATCATTTTTTTTTTTGTNTTTCATAAANTTTCTTAACAATATGTTAAGATGGAANAATTATATCATATTAATGGATTAGAATGAAACAAANGCTGTTTACNTGTGTACCTAGTTTATTCAGTGTTTAGATTAAATGATGACGTTATGAAAGTAGACACGTTTCTCAAA
gi|1 : GGGGCGAGTGTGCTTTAGTGGTAAACTATAAGTACTTATTCAGATGTTGCATCCAATCTATGGTCATTTTCACACGATCCACACACTTTTGAAAAGTGTAATCCCATTGGCTTTAGTCAAGGATCAAAGACAAAGTATTGATTTCATAAATAGACATGAAAGCATTTATTTTCCCTACATAATTTGA-GA-AAAATA---AC----ACACTATTT-------ATAGATCA-CCA---GTATATACA----A------ATGTCTTTATTTAGCAATTAAGCATACA------------A-CA--TGTTTATAGCCTA--------C-------ACAAAT--A-CATGAAAATATGAATATA------GCG-A---GAA-AATG-AA---CAATTG-AACTTATCATTAGTTATACCTATAA-CACCAACT-------TTATATATAGATCAGATTTAC-CAAG-AA-GCACAAA---A----T-T--T--ATT---T--T-----------------------G--T---TTTTT---AATCT------------------------GAA--------------------------AGCAAAAT----AAA--TAAAT---T-TC--G-C--TAAGTTATGGACAGTAC-GTTTTG--CTATAGAT-----ATCATTAGCATATGGAATTTG-TTTAAGTTTAGTCATCGGCAATAGTTATG
gi|1 : AATCTGGTAAGAGCTAT-TTTAAACTTTTTCTCCATAT------CACAATCTAAGTAGGACTCTAAATTAAAAGTGCACTTGAAACGACAGTAAGATGATAGTCTATTCAAGTTA------TTTATTTCTGAATACACACTTTGGTTATATATGTCTAAGATT-CTGTATTTTATGTGTGCAAAGCTTGTTTGTTCTATATCATACTGATAGAGCCAAATGTCTGTCATACCTAAGGTTTGTAATATTGATTTGATTTGAAAA-GC-CAAGTTTGATCCATTATAAGAATTATTATTATCAGCATCATTTTTTTT---GTCTTTCATAAATTTTCTTAACAATATGTTAAGATGGAAGAATTATATCATATTAATGGATTAGAATGAAACAAATGCTGTTTACTTGTGTACCTAGTTTATTCAGTGTTTAGATTAAATGATGACGTTATGAAAGTAGACACATTTCTCAAAgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatctggtaagagctattttaaactttttctccatatcacaatctaagtaggactctaaattaaaagtgcacttgaaacgacagtaagatgatagtctattcaagttatttatttctgaatacacactttggttatatatgtctaagattctgtattttatgtgtgcaaagcttgtttgttctatatcatactgatagagccaaatgtctgtcatacctaaggtttgtaatattgatttgatttgaaaagccaagtttgatccattataagaattattattatcagcatcattttttttgtctttcataaattttcttaacaatatgttaagatggaagaattatatcatattaatggattagaatgaaacaaatgctgtttacttgtgtacctagtttattcagtgtttagattaaatgatgacgttatgaaagtagacacatttctcaaa
gi|10 : ggggcgagtgtgctttagtggtaaactataagtacttattcagatgttgcatccaatctatggtcattttcacacgatccacacacttttgaaaagtgtaatcccattggctttagtcaaggatcaaagacaaagtattgatttcataaatagacatgaaagcatttattttccctacataatttgagaaaaataacacactatttatagatcaccagtatatacaaatgtctttatttagcaattaagcatacaacatgtttatagcctacacaaatacatgaaaatatgaatatagcgagaaaatgaacaattgaacttatcattagttatacctataacaccaactttatatatagatcagatttaccaagaagcacaaaatttattttgttttttaatctgaaagcaaaataaataaatttcgctaagttatggacagtacgttttgctatagatatcattagcatatggaatttgtttaagtttagtcatcggcaatagttatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATACA----A------ATATCTCTGTTCTGCAATTAAATATATA------------A-CA--TCTTTATAACCTA--------CACTAGGAACAAAT--A-CAT
gi|10 : a--T-----------------------G--T---TTGTA---AATCT------------------------GAC--------------------------AGCAAAAT----AAA--GAAAT---T-TC--G-C--TAATGTAAGGAC------GTTTTG--CTATAGAT-----GCCATTAGCATATCGACATTG-TTTAAACTTGACCATCGGCAATAGTAATtacaacacctcatcaaaggtgtcatcaaataaccttaaattgtattaagcataaacatgaagctttttttcatgtttgtataaaatgcattattaattaggtgatgtttgtaaatctgacagcaaaataaagaaatttcgctaatgtaaggacgttttgctatagatgccattagcatatcgacattgtttaaacttgaccatcggcaatagtaattatcaattcttaattcgtcatagaagagacaaacaagcaacaca
gi|11 : aatacaaatatctctgttctgcaattaaatatataacatctttataacctacactaggaacaaatacattacaacacctcatcaaaggtgtcatcaaataaccttaaattgtattaagcataaacatgaagctttttttcatgtttgtataaaatgcattattaattaggtgaTCTAAAT------CGACATTTAATAAATACTCTAGGTTAAAATTGTGCTTTAAATGACAGTA------T--TTTTTTCGAATTACATGTATTTACTTCTGACT-CAAACATTGGAGATATATCTCT-TGATTTCAGTGTTTTATGTATTCAAAGCTATTTTGTTCGATATT-TATT-ATGAAGCCCTATACGTGTCATACCTGAGGTCCAAAAACTTGATTT--TTTAAAAT-GCACA-ATTTGATTAATCATAACAATTATTTTTATTAGCGTCATTTATGTTTTtatcaattcttaattcgtcatagaagagacaaacaagcaacaca
gi|12 : caCTTTATTCAGCAATTAAATATACA------------A-CA--TGTTTAAAGTATA--------C-------ATAAAT--A-CATGAAACTATGAATATA------GTG-A---GAA-CATG-CA---CAATTA-AACCTATCATTAGTTATACCAATAA-CATCAACC-------T-------AGATCAGATCTAC-CAAG-AA-ACACAAA---A----T-T--T--ATT---T--G-----------------------C--T---TTTTTAAAAATCTATACATTTGGTTGTTTCTTAATCTGAA--------------------------AGTAAAAT----TAA--TAAAT---T-TC--G-C--TAAGTTAAGAACAGTAC-TTTTTG--CTATAGTT-----GTCATTAGAATATCGAATTGT-TTTAAGTTTGGCCATCAGCAATAGagcaatggtgtaatattttaatcgcaatatctaaagtcataatttaatcata
gi|13 : ATATA----A------ATATCTTTATTCAGCAACTAAACATACA------------G-CA--TGTTTATAGCCCA--------C-------ACAAAT--A-CATGAAAATATGAATATA------ATG-A---GAA-CATG-AA---CAATTT-AACCTATCATTAGTGATACCTATGA-TATTAGC------------------ATT-GATTTAC-CAAG-AA-TTACGAA---C----T-T--T--ATT---T--T-----------------------A--T---TTTT
gi|13 : --T-----------------------G--T---TTCTT---AATCT------------------------GAA--------------------------AGCAAAAT----AAA--TAAAT---T-TC--G-C--TAAGTTAAAGAAAGTAC-GTTTTG--CTTAAGAT-----TCCAATAGCATATCGGATTTG-Tgtttgtatttacatttttatctttacatatggtggtgtttcttaatctgaaagcaaaataaataaatttcgctaagttaaagaaagtacgttttgcttaagattccaatagcatatcggatttgt
gi|14 : atataaatatctttattcagcaactaaacatacagcatgtttatagcccacacaaatacatgaaaatatgaatataatgagaacatgaacaatttaacctatcattagtgatacctatgatattagcattgatttaccaagaattacgaactttattttatttttgtttgtatttacatttttatctttacatatggtggATACA----A------ATATCTTTATTCAGCAATTAAACATACA------------A-TA--TGTTTATAGCCTG--------C-------ACAAAT--AACATGAAAATATTAATATA------GCG-A---GAA-CATG-AA---CAGTTA-AACATATGATAAGTTATACCTATAA-CAT-AACC-------T-------AGATCAGAGTTAC-CAAG-AA-GCACAAA---ATGTAT-T--TGAATT---T--TTTAAAATCTATACATAAGGTTATG--T---TTCTT---AATCT------------------------GAA--------------------------GGCAACAT----AAA--TATAT---
gi|15 : tgatatacaaTATGTACA----T------ATACATTTATTCAGCAAT-AAACATACA------------G-CACCTGTATATGGCTTAATTTAATAT-------ACACAT--A-TATGAAAATATGAAGACA------GTA-A---GA---ATA-AC---CAATCA-AATCaaacagtataggtgttgaaaacataacgtttcattaattagaattcagttgtttt
gi|15 : --T-----------------------G--T---TTCTA---AAATT------------------------GAA---------------------------GCAAAAC----AAAATTATAT---A-AC--A-C--TAAATTCAAGACAGTAT-ATTTTT--CTCTTGAT-----ATCATTAGCGTATagatttcatagctgggaaacattttttttaattcttgtttttcaaaataaaaaaagaatttacacctggtataattatattaggtcatgtttctaaaattgaagcaaaacaaaattatataacactaaattcaagacagtatatttttctcttgatatcattagcgtat
gi|17 : tatgtacatatacatttattcagcaataaacatacagcacctgtatatggcttaatttaatatacacatatatgaaaatatgaagacagtaagaataaccaatcaaatcagatttcatagctgggaaacattttttttaattcttgtttttcaaaataaaaaaagaatttacacctggtataattatattaggtcaA--TGTTTATAGCCTA--------C-------ACAAA-----CATGCAAATGTGAGTATA------ATG-A---GGA-CAAG-AA---CAATTA-AACCTATCGTCAGTTATACATATAA-----AATC-------T-------AGATCAGATTTAC-CAAG-AA-GCACAAACTTA----T-T--T--ATT---TA-T-----------------------G--T---TT
gi|17 : CAAAC--A----T-T--A--GTTG--T--T-----------------------G--C---TTCTC---AATCT------------------------GAA--------------------------AGCAAAAT----AAA--gcattaactgtttttttagaccaaacattagttgttgcttctcaatctgaaagcaaaataaagatatgtataatgtataaacat
gi|18 : atgtttatagcctacacaaacatgcaaatgtgagtataatgaggacaagaacaattaaacctatcgtcagttatacatataaaatctagatcagatttaccaagaagcacaaacttatttatttatgtttgcattaactgtttttttagacATATACA----A------AAATCTTTGTTCAACAATTAAACAAAGA------------A-CA--TGTT----------------------------AAT--A-CATTTAAATATAATTATA------GTG-A---GTA-TATA-AA---CAATCA-AACACATTATTAGTTATACATATCG-AATCCACC-------T-------AACTCAGATTTAC-TAAG-AA-ACACAAA---A----T-T--T--ATT---T--T-----------------------A--T---TTgatatgtataatgtataaacat
gi|19 : atacaaAAATAG---TGAAA--------TTTCCC---ATAAATTG--GA-TAAATG---TC----AAATCA----------AAAAATCA-T-A-------ATACA----G------ATATCTTTGTTCAGCAATAAAACATACA------------------TATTTATAGCCTA--------C-------ACAAAT--A-CATGGAAATATGAATATA------GTGNN---NNN-NNNN-NA---TATTTATAGCCTAatgtttgtatttccttttttttgttattatcatgcattatatatta
gi|19 : aattgacggga-AAAACAT--AC----A---TATTT-------ATAGCCTA-C-ACAAATACATGGA----A------ATATGAATAT--AG----TGNNNNNNNN------------N-NA--TATTTATAGCCTA--------C-------ACAAAT--A-CATGGAAATATGAATATA------GTG-A---GAA-TATG-AA---CAcacaaatacatggaaatatgaatatagtgagaatatgaaca
gi|2 : aattgacgggaaaatagtgaaatttcccataaattggataaatgtcaaatcaaaaaatcataatacagatatctttgttcagcaatGGGGCGAGTGTGCTTTAGTAGTAAACTATAGGTACTTATTCAGATGTTGCATCCAATCTATGGTCATTTTCACACGATTCACACACTTTTGAAAAGTGTAATCCCATTGGCTTTAGTCAAGGATCAAAGACAAAGTATTGATTTCAGAAATAGACATGAAAGCATTTATTTTCCCTACATAATTTGA-GA-AAAATA---AC----ACAATGTTT-------ATAGATCACC-A---GTATATACA----A------ATGTCTTTATTCAGCAATTAAGCATACA------------A-TA--TGTTTATAGCCTA--------C-------ACAAAT--A-CATGAAAATATGAATATA------GTG-G---GAA-CATG-AA---CAATTG-AACTTATCATTAGTTATACCCATAA-CACCAACTTTATATAT-------AGATCAGATTAAC-CAAG-AA-GCACAAA---A----T-T--T--ATT---T--T-----------------------AT-T---TTTTT---AATCT------------------------GAA--------------------------AGCAAAAT----AAA--TAAAT---T-TC--G-C--TAAGTTAAGGACAGTAC-ATTTTG--CTATAGAT-----GTCATTA-CATATGGAATTTG-TTTAAGTTT
gi|2 : AACCTAGTAAGAGCTAT-TTTAAACTTTTTCTTCATAT------CACAATCTAAGTAGGACTCTAAGTTAAAAGTGCACTTGAAACGACAGTAAGATGATAGTCTATTCAAGTTA------TTTATTTCTGCATACCAACTTTGGTTATATATGTCTAAGATT-CTGTATTTTATGTGTGCAAAGCTTGTTTGTTCTATATCATACTGATAGAGCCAAATATCTGTCATACCTAAGGTTTGTTATATTGATTTGATTTG----------------ATCCATTATAAGAATTATTATTATCGACATCATTTTTTTTTTTGTGTTTCATAAAGTTTCTTAACAATATGTTAAGATGGAACAATTATATCATATTAATGGATTAGAATGAAACAAAGGCTGTTTACATGTGTACCTAGTTTATTCAGTGTTTAGATTAAATGATGACGTTATGAAAGTAG--ACGTTTCTCAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttgccgctttctttggtgagattttcggaagataacctagtaagagctattttaaactttttcttcatatcacaatctaagtaggactctaagttaaaagtgcacttgaaacgacagtaagatgatagtctattcaagttatttatttctgcataccaactttggttatatatgtctaagattctgtattttatgtgtgcaaagcttgtttgttctatatcatactgatagagccaaatatctgtcatacctaaggtttgttatattgatttgatttgatccattataagaattattattatcgacatcatttttttttttgtgtttcataaagtttcttaacaatatgttaagatggaacaattatatcatattaatggattagaatgaaacaaaggctgtttacatgtgtacctagtttattcagtgtttagattaaatgatgacgttatgaaagtagacgtttctcaaa
gi|20 : ggggcgagtgtgctttagtagtaaactataggtacttattcagatgttgcatccaatctatggtcattttcacacgattcacacacttttgaaaagtgtaatcccattggctttagtcaaggatcaaagacaaagtattgatttcagaaatagacatgaaagcatttattttccctacataatttgagaaaaataacacaatgtttatagatcaccagtatatacaaatgtctttattcagcaattaagcatacaatatgtttatagcctacacaaatacatgaaaatatgaatatagtgggaacatgaacaattgaacttatcattagttatacccataacaccaactttatatatagatcagattaaccaagaagcacaaaatttattttatttttttaatctgaaagcaaaataaataaatttcgctaagttaaggacagtacattttgctatagatgtcattacatatggaatttgtttaagtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttgccgctttctttggtgagattttcggaagatA-AAGATATCTAT----GTGATATAT-------ATA---CA-T-A----TATATATATGTTA------ATATCTTTAATCATCAATTAAAC-TATA------------A-CA--GGTTTATAGCCTG--------C-------ACTAAT--A-CATAAAAGTATGAATATACATATTGTG-A---GAC-TATA-AA---CAGATA-AACCCATTATTCGTTGTACTTATCA-AATCCACT-------T-------CAACCAGATTTAC-C
gi|21 : ttagaatgcATACA----G------GTATCTCTATACAGCAATTGATCATATA------------A-CA--TGTTTAAAGCCTA--------C-------ACAAAT--G-CATGAAAACA-------A------CTG-A----AA-CTTGTAT---TAACTA-CACCTA-CAT--G-------TATCA-CATCAACC-------T-------AAATCAGATTTAC-TAAG-AC-GCACAAA---T----T-T--T--ATT---C--T-----------------------T--T---Tg
gi|22 : atacaaT-------ATAAACTA-C-A---A---ATACA----A------ATATTTTTA----ACAA------ATGC---------------CA--TCTTTATATCTTG--------C-------GCAAAG--A-CATGAAAATATGGAGATA------GTG-A---GAT-TAAA-AA---CAATTA-AACCTATTACTTGTTATATTCATAA-----AATC-------T-------AAATCTGATTTAC-AAAG-Aaatttttttatgcgtttacttactgttt
gi|23 : gaaTATA----G------ATGTATTTATTCAGCAATTAAATAT----------------------GTTTATAGCCTA--------C-------A-ACAT--A--GTGAAAATATGAGTATA------GTG-A---GAA-CATG-A---------A-AACATGTCA--A---------------ATCAATC-------T-------AAATCATACTAAC-CAAG-AA-ACTCAAA---A----T-TCCT--ATT---t
gi|24 : ataaag---TTTTT---AATCT------------------------GAA---------------------------TTAAAAA----AAA---AAAT---T-TTTTG-C--TAAATTAAGGACAGTAT-GTTTTG--TTATAGCT-----TTCATTAGTATATCAAATTTG-TTTAGGattc
gi|25 : ttttactttattttgtataaaatccatgattcgtaaggtgattc---A----T-T--T--ATTAGGT--T-----------------------G--TGTTTTTTT---AATCT------------------------GAA--------------------------AGCAAAAT----AAA--CAAAT---T-TC--G-T--TAAGTTTAGAACACAACAGTATTGAACTAGAGGTTAGTAGTCATT
gi|26 : ttgattttttaaaatctATACA----C------ATAT-TTTAT-AAGAACTCAAATATATA------------A-TA--TGTTTATAACCTA--------A-------ACAAAT--G-CATGAA------AATGTA------ATG-ATTTGAA-CAT---A---TTATTA-CATCTACCg
gi|28 : aaatacaaTT---A--T-----------------------G--T---TTCTT---AATCT------------------------GAA--------------------------AGCAAAAT----ATA--TA
gi|3 : cagcatgttattttttttatttttatttttttaatatatacattaagACATACA----A------ATATCTTTATTCAGCAATTAAACATACA------------A-TA--TGTTTATAGCCTA--------C-------ACAAATA-A-CATGAAAATATGACTATA------GTG-A---GAA-CATG-AA---CAATTG-AACCTACCATAAGTTATA-CTATAT-CATCAACC-------T-------AGATCAGATTTAC-CAAGTAA-G-ACAAATGTA----TCT--T--ACT---T--TTTCGGTATATAAATTAGGTTAT-G--T---TTATT---AATCT------------------------GAA--------------------------AGCAAAAT----AAA--TACAT---T-TT--G-CT-TAAGTAAAGAACAGTAC-GTTTTG--CTAAAGTT-----GTC-TTAGCATATCGAATTCG-CTTTAGTTTGGCCATCAGCAGCAGTAATG
gi|3 : acAATCAGGTAAGAGTTAT-TATAAACTGTGTTTATATAT------CGATATTTAAGTTAGACTCTAACTTAAAAGTGTGCTTGAAACGACAGTAAGATGAAAGTCTATTCGAATTA------TTTGTTTTTGTGTAACAAGTTTGGTGATATATGTCTATGATT--TGT-TTTTATGTGTTCAAAACTTATTTGTTCCATATCATACTGATAGAGCAAAATATGTGTCATATCTAAGGTTTTGGATATTGATTTGATTTGAAAATCC-CG-GTTTGATCCATTATAAGAATTATTTTTATCGGTATCATtttaaaatattttgtcttaattctttaaagaatggaccaacaagtaacaagtgatacttattttcaaaaaaaaaatatgttacaaaaattacctatcctttcttttctttgaatagtttcacatcattcgctttctatggcgagaatataggaagtaaatatcaatcaggtaagagttattataaactgtgtttatatatcgatatttaagttagactctaacttaaaagtgtgcttgaaacgacagtaagatgaaagtctattcgaattatttgtttttgtgtaacaagtttggtgatatatgtctatgatttgtttttatgtgttcaaaacttatttgttccatatcatactgatagagcaaaatatgtgtcatatctaaggttttggatattgatttgatttgaaaatcccggtttgatccattataagaattatttttatcggtatcat
gi|4 : acacatacaaatatctttattcagcaattaaacatacaatatgtttatagcctacacaaataacatgaaaatatgactatagtgagaacatgaacaattgaacctaccataagttatactatatcatcaacctagatcagatttaccaagtaagacaaatgtatcttactttttcggtatataaattaggttatgtttattaatctgaaagcaaaataaatacattttgcttaagtaaagaacagtacgttttgctaaagttgtcttagcatatcgaattcgctttagtttggccatcagcagcagtaatgtttaaaatattttgtcttaattctttaaagaatggaccaacaagtaacaagtgatacttattttcaaaaaaaaaatatgttacaaaaattacctatcctttcttttctttgaatagtttcacatcattcgctttctatggcgagaatataggaagtaaatatcATACA----A------CTATGTTTATTCAGCAATTAAACATACATATGTATCCTGTATCC--TGTTTATAGCCTA--------C-------ACACAT--A-CTTGAAAATATGAATATA------GTG-A---GAA-TATG-AA---CAATTT-AACCTAGTA----TCATACCTATCA-AATCAACC-------T-------GAATCAGATTTAC-CAAG-AA-GCACAAG---A----T-T--T--ATT---T--T-----------------------A--T---TT
gi|4 : atacaa----T-T--T--AGT---TAAT-----------------------G--T---TTCTT---GATCT------------------------GAA--------------------------ATCAAGCT----AAA--TTAAT---T-TC--G-CGCTGAATTTAAGACAGTAC-GTTT-G--CTATAGAT-----GTCATTAGCATATCGAATTTG-TTTAGGTTTGGCCATCGGatatttgtatttacttttaattttttcagatctatactttagttaatgtttcttgatctgaaatcaagctaaattaatttcgcgctgaatttaagacagtacgtttgctatagatgtcattagcatatcgaatttgtttaggtttggccatcggttaaagttgtgttttaaatgtttttttgtcttaattatttattaaagggacaatcacgtaggaaattatattcattttcaataaattcgtgctacaaaattaacatgtccttttatttctttgaatattttcgtattaatcgtattctatggcgaaattatgggaggataatctaaatttggtaagagctatttgattttttttctccatataaatatccatatgtaaacaaaactcaaagttcaaaatgtacttgaaatgacagtag
gi|4 : atacaaatacaactatgtttattcagcaattaaacatacatatgtatcctgtatcctgtttatagcctacacacatacttgaaaatatgaatatagtgagaatatgaacaatttaacctagtatcatacctatcaaatcaacctgaatcagatttaccaagaagcacaagatttattttatttatatttgtatttacttttaattttttcagatctatacAATTTGGTAAGAGCTAT-TTGATTTTTTTTCTCCATATAAATATCCATATGTAAACAAAACTCAAAGTTCAAAATGTACTTGAAATGACAGTAttaaagttgtgttttaaatgtttttttgtcttaattatttattaaagggacaatcacgtaggaaattatattcattttcaataaattcgtgctacaaaattaacatgtccttttatttctttgaatattttcgtattaatcgtattctatggcgaaattatgggaggataatctaaatttggtaagagctatttgattttttttctccatataaatatccatatgtaaacaaaactcaaagttcaaaatgtacttgaaatgacagtag
gi|5 : atacaaatacaactatgtttattcagcaattaaacatacatatgtatcctgtatcctgtttatagcctacacacatacttgaaaatatgaatatagtgagaatatgaacaatttaacctagtatcatacctatcaaatcaacctgaatcagatttaccaagaagcacaagatttattttatttatatttgtatttacttttaattttttcagatctatactttagttaatgtttcttgatctgaaatcaagctaaattaatttcgcgctgaatttaagacagtacgtttgctatagatgtcattagcatatcgaatttgtttaggtttggccatcggttaaagttgtgttttaaatgtttttttgtcttaattatttattaaagggacaatcacgtaggaaattatattcattttcaataaattcgtgctacaaaattaacatgtccttttatttctttgaatattttcgtattaatcgtattctatggcgaaattatgggaggataatctaATACA----ATTATCTATATCTATATTCGGCAATTAAAAATACA------------A-CA--TGTTTATATCC-----------------------------ATGAAAATATAAATAAA------GTG-A---GAA-TATG-AA---CAATTA-AACCTATCATTAGTTATA-CTAAAATCATCAACC-------T-------AGATAAGATTTAC-AAAG-AA-GCACAAC---A----T-T--T--ATT---T--G-----------------------A--T---TTTTg
gi|5 : --ATT---G--T-----------------------G--T---TTTTT---AATCT------------------------GAA--------------------------AGGAAAAT----AAA--TAAATAAATATC--G-C--TAAG-TGAGAACATTAC-GTTTTG--AAATAGAT-----GTCATTTACATATCGAA-------TAAGTTTGGCCATCGGCAgttgtatttacttttttttaaatctatacgttagattgtgttttttaatctgaaaggaaaataaataaataaatatcgctaagtgagaacattacgttttgaaatagatgtcatttacatatcgaataagtttggccatcggcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttgccgctttctatggcgagatatgggaggatctaaatctggtcagagctatttaaactttttctccatatcgctattaaagtaagactctaagtaaaaagtg
gi|5 : atacaattatctatatctatattcggcaattaaaaatacaacatgtttatatccatgaaaatataaataaagtgagaatatgaacaattaaacctatcattagttatactaaaatcatcaacctagataagatttacaaagaagcacaacatttatttgatttttgttgtatttacttttttttaaatctatacgttagAATCTGGTCAGAGCTAT-TT-AAACTTTTTCTCCATAT------CGCTATTAAAGTAAGACTCTAAGTAAAAAGTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttgccgctttctatggcgagatatgggaggatctaaatctggtcagagctatttaaactttttctccatatcgctattaaagtaagactctaagtaaaaagtg
gi|6 : atacaattatctatatctatattcggcaattaaaaatacaacatgtttatatccatgaaaatataaataaagtgagaatatgaacaattaaacctatcattagttatactaaaatcatcaacctagataagatttacaaagaagcacaacatttatttgatttttgttgtatttacttttttttaaatctatacgttagattgtgttttttaatctgaaaggaaaataaataaataaatatcgctaagtgagaacattacgttttgaaatagatgtcatttacatatcgaataagtttggccatcggcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttgccgctttctatggcgagatatgggaggatctaCATAGCCTGAAGATAGAATA---ACCGTAACGGTATTTGTATAAAATATATGA-C-A---G---ATACA----A------ATATATTTATTCAGTAATTAAACAT-------------------------TATAGCCTA--------T-------ACAAAT--A-CATGAAGGTATGGAGATA------GTG-A---GAA-T-TA-AA---CAATTT-AACATATTACAAGTTTTACCTATCA-AATCAACC-------T-------AAATCAGATTTAT-CAAA-AA-GCGTGAA---T----T-C--C--ATT---T--T-----------------------C--T---T
gi|6 : ATTAAACAATTTAACATATT------------A-CA--AGTTT-TA-CCTA--------T--------CAAATCAA-CCT--AAAT-CAGATTTA------TCA-A---AAAGCGTG-AATTCCATTTT---CTTATCAT-----ATACTT-------TTTACC-------T----------TTTTATTGAT-AAAG-AATGCGTTA-----------T--T--GTT---A--T-----------------------G--T---TTCTT---AATCT------------------------GAA--------------------------ATCAAACT----G--------T---T-TC-------TAAATTAAGGACAGTAC-GTATTG--TTATAGAT-----GTTA-AAGCA--------TTGCCTTAAACTTGGCCATCAGCAATAGatcatatactttttacctttttattgataaagaatgcgttattgttatgtttcttaatctgaaatcaaactgtttctaaattaaggacagtacgtattgttatagatgttaaagcattgccttaaacttggccatcagcaatagatatgtttaaaacacgtctgtgttaattctttattaaagggacaaaacaagtaataaatggtattcgttttcaataaaatgcatgttacaaaattgacatatcccaccatttctttaaatattttgtcaaatcgtcatcatgttttat
gi|7 : catagcctgaagatagaataaccgtaacggtatttgtataaaatatatgacagatacaaatatatttattcagtaattaaacattatagcctatacaaatacatgaaggtatggagatagtgagaTT---A--T-----------------------G--T---TTCTT---AATCT------------------------GAA--------------------------AGCAAAAT----AAA--TAAAT---T-TC--A-T--TAAGTAAAGAACAGTAC-GTATTG--TTGTTATT-----GTCATTATTATATCGAATTTG-TTTAAGTTTGGCCATCGGCAGTTGTAACGatatgtttaaaacacgtctgtgttaattctttattaaagggacaaaacaagtaataaatggtattcgttttcaataaaatgcatgttacaaaattgacatatcccaccatttctttaaatattttgtcaaatcgtcatcatgttttat
gi|7 : attcttttaaaaatcgaaacattaggAATGTGGTAAGAGCTATATTTAAACGTTTTCTCCATAT------CGATATTTAAGCAAGACTGTAAGTTTAAAGTGTGTTTGAAACGACAGTAAGATGATAGTCTATTCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctaccactttctatggcgagatgatgggaggattatctaaatgtggtaagagctatatttaaacgttttctccatatcgatatttaagcaagactgtaagtttaaagtgtgtttgaaacgacagtaagatgatagtctattc
gi|8 : attcttttaaaaatcgaaacattaggttatgtttcttaatctgaaagcaaaataaataaatttcattaagtaaagaacagtacgtattgttgttattgtcattattatatcgaatttgtttaagtttggccatcggcagttgtaacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctaccactttctatggcgagatgatgggaggattatcta----ACGGTATAT-------ACAAAT-A-C-A---A---ATACT----A------ATATCTTTATTCAGCAATTAAACATAC-------------A-CA--TGTTTATAGCCTA--------T-------ACAAATA-A-CATGAAAATATGAACAAA------GTG-A---GAA-CATG-AA---CAATTA-AACCTATCATAAGTTATACCTATAA-AATCAACC-------T-------AGATCAGATTTAC-CAAG-AA-GCACAAA---A----T-T--T--A-T---T--T-----------------------GATT---TTTTT---AATCT------------------------AAACATTAGGTTATGTTTCTTAATCTGAAAGCAAAAT----AAA--TAAAT---T-TC--GCC--CAA--TAA----AGTAC-GTTTTG--CTATATTT-----TTCATTAGCGTATTGAATTTG-TTTAAGTTTGGTCATCGGCAGTAGTAATG
gi|9 : gcgagaacgcaacgaatttaccgACCATTAGTTATACCTATAA-CATCAACC-------T-------AGATCAGATTTACATAAA-AA-GCACAAC---A----T-T--T--ATT---T--TA----------------------A--T---TTCtttaaaatatttttgtcttaattctttatagaagggacaaacaagtaagac
gi|9 : ---A----T-T--T--GGT---TA-T-----------------------G--T---TTCTT---AATCT------------------------GAG--------------------------AGCAAAATAAATAAA--TAAAT---T-TC--A-C--TAAGCTAACAACAGTAT-GTTTTG--CTATAGAT-----GTCATTAGCATATCAAATTTG-TTTTAGTTTAGCCATTGGCAATAGTAATGattttttttttaacccttacatttggttatgtttcttaatctgagagcaaaataaataaataaatttcactaagctaacaacagtatgttttgctatagatgtcattagcatatcaaatttgttttagtttagccattggcaatagtaatgtttaaaaatatttttgccttaattctttaaagaagggacaaacaaataagataaagtaatcaaacccgattatttgatctgatttcacatcatatctttaattactctgttaa
blockSeqs : G A G T A AA T ACCGTA AAT T GTATAAA A C C . CAAATAC ATTATCT TATGTATCCTGTAT CC ATTTAATAT CA A CATATT N TTT G T TTC T T A TC TTATATA . A T T ATGTA C CC GA AGGT TTAAAATCTATACATAAGGTTATG GTT AAA ATACATTTGGTTGTTTCTTAATCT CATTAGGTTATGTTTCTTAATCTGAA AAAT AT AAA A TT C GC A AA TAGTA C A T AAATAT AC CATGTA AC A A G AA TC G T A G G CAAA G A TGCACAA T TTT G G C G A .
blockSeqs : . . . T A . TCTAT CAA T . G T . . GTAT TGTTA A . CACTAGGA A . . . . . . . . T G C . . . . . CTTA . . . TAA TTCGGTATATAAATTAGGTTATG . . . . . . . . . . T . . . . . T . CA . CA A C T AT C A G A G C TGTT G A ATCCCGG A
blockSeqs : C . . TAC TGA A . G C . . TAT A A . C A . . . . . . . . A A T . . . . . TGTA . . . TA GAT . . . . . . . . . . . . . . . . G . AT . TG . C G T . . T . . G TTGG . . . T
blockSeqs : . TC CGG T . A C . . A A G . C . . . . . . . . . C A C . . . . . CA . . . GT AT . . . . . . . . . . . . . . . . T . AT
blockSeqs : . AC CGG A . T T . . G A A . C . . . . . . . . . T C A . . . . . A . . . TA AA . . . . . . . . . . . . . . . . . . CT
blockSeqs : . . . A G . . A T G . C . . . . . . . . . T A C . . . . . C . . . T G . . . . . . . . . . . . . . . . AT
blockSeqs : . . . . . . A A . C . . . . . . . . . T C A . . . . . A . . . T C . . . . . . . . . . . . . . .
blockSeqs : G N . C . . . . . . . . . T C C . . . . . A . . . T A . . . . . . . . . . . . . . .
blockSeqs : A A . C . . . . . . . . . A A C . . . . . T . . . T G . . . . . . . . . . . . . . .
blockSeqs : A A . C . . . . . . . . . T A A . . . . . A . . . T G . . . . . . . . . . . . . . .
blockSeqs : G A . C . . . . . . . . . A C A . . . . . A . . . C G . . . . . . . . . . . . . . .
blockSeqs : A A . C . . . . . . . . . A A A . . . . . A . . . A G . . . . . . . . . . . . . . .
blockSeqs : G A . C . . . . . . . . . T C C . . . . . A . . . T A . . . . . . . . . . . . . .
blockSeqs : C A . A . . . . . . . . . . A . . . . . . T . . . T T . . . . . . . . . . . . . .
blockSeqs : A A . C . . . . . . . . . . A . . . . . . A . . . T G . . . . . . .
blockSeqs : A A . C . . . . . . . . . . . . . . . . A . . . G G . . . . . .
blockSeqs : A . . T . . . . . . . . . . . . . . . A . . . T A . . . . . .
blockSeqs : A . . T . . . . . . . . . . . . . A G .
blockSeqs : . . T . . . . . . . . . . . . A A .
blockSeqs : . . . . . . . . . . . . T G .
blockSeqs : . . . . T C .
blockSeqs : G .
blockSeqs : G .
blockSeqs : G .
blockSeqs : .
blockSeqCons : AT***** *******
originalCons : GGGGCGAGTGTGCTTTAGTGGTAAACTATAGGTACTTATTCAGATGTTGCATCCAATCTATGGTCATTTTCACACGATCCACACACTTTTGAAAAGTGTAATCCCATTGGCTTTAGTCAAGGATCAAAGACAAAGTATTGATTTCANAAATAGACATGAAAGCATTTATTTTCCCTACATAATTTGA-GA-AAAATA---AC----ACGNTATTT-------ATAGATCA-C-A---GTATATACA----A------ATATCTTTATTCAGCAATTAAACATACA------------A-CA--TGTTTATAGCCTA--------C-------ACAAAT--A-CATGAAAATATGAATATA------GTG-A---GAA-CATG-AA---CAATTA-AACCTATCATTAGTTATACCTATAA-CATCAACC-------T-------AGATCAGATTTAC-CAAG-AA-GCACAAA---A----T-T--T--ATT---T--T-----------------------G--T---TTCTT---AATCT------------------------GAA--------------------------AGCAAAAT----AAA--TAAAT---T-TC--G-C--TAAGTTAAGGACAGTAC-GTTTTG--CTATAGAT-----GTCATTAGCATATCGAATTTG-TTTAAGTTTGGCCATCGGCAATAGTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCTGGTAAGAGCTAT-TTTAAACTTTTTCTCCATAT------CGATATTTAAGTAAGACTCTAAGTTAAAAGTGCGCTTGAAACGACAGTAAGATGATAGTCTATTCGAGTTA------TTTATTTCTGNATACNAACTTTGGTNATATATGTCTANGATT-CTGTATTTTATGTGTNCAAAGCTTGTTTGTTCTATATCATACTGATAGAGCCAAATATNTGTCATACCTAAGGTTCGNAATATTGATTTGATTTGAAAA-GC-CG-GTTTGATCCATTATAAGAATTATTNTTATCGGCATCATTTTTTTTTTTGTNTTTCATAAANTTTCTTAACAATATGTTAAGATGGAANAATTATATCATATTAATGGATTAGAATGAAACAAANGCTGTTTACNTGTGTACCTAGTTTATTCAGTGTTTAGATTAAATGATGACGTTATGAAAGTAGACACGTTTCTCAAA
finalCons : GGGGCGAGTGTGCTTTAGTGGTAAACTATAGGTACTTATTCAGATGTTGCATCCAATCTATGGTCATTTTCACACGATCCACACACTTTTGAAAAGTGTAATCCCATTGGCTTTAGTCAAGGATCAAAGACAAAGTATTGATTTCANAAATAGACATGAAAGCATTTATTTTCCCTACATAATTTGA-GA-AAAATA---AC----ACGNTATTT-------ATAGATCA-C-AAT-----ATACA----A------ATATCTTTATTCAGCAATTAAACATACA------------A-CA--TGTTTATAGCCTA--------C-------ACAAAT--A-CATGAAAATATGAATATA------GTG-A---GAA-CATG-AA---CAATTA-AACCTATCATTAGTTATACCTATAA-CATCAACC-------T-------AGATCAGATTTAC-CAAG-AA-GCACAAA---A----T-T--T--ATT---T--T-----------------------G--T---TTCTT---AATCT------------------------GAA--------------------------AGCAAAAT----AAA--TAAAT---T-TC--G-C--TAAGTTAAGGACAGTAC-GTTTTG--CTATAGAT-----GTCATTAGCATATCGAATTTG-TTTAAGTTTGGCCATCGGCAATAGTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCTGGTAAGAGCTAT-TTTAAACTTTTTCTCCATAT------CGATATTTAAGTAAGACTCTAAGTTAAAAGTGCGCTTGAAACGACAGTAAGATGATAGTCTATTCGAGTTA------TTTATTTCTGNATACNAACTTTGGTNATATATGTCTANGATT-CTGTATTTTATGTGTNCAAAGCTTGTTTGTTCTATATCATACTGATAGAGCCAAATATNTGTCATACCTAAGGTTCGNAATATTGATTTGATTTGAAAA-GC-CG-GTTTGATCCATTATAAGAATTATTNTTATCGGCATCATTTTTTTTTTTGTNTTTCATAAANTTTCTTAACAATATGTTAAGATGGAANAATTATATCATATTAATGGATTAGAATGAAACAAANGCTGTTTACNTGTGTACCTAGTTTATTCAGTGTTTAGATTAAATGATGACGTTATGAAAGTAGACACGTTTCTCAAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ATAATTTAGCTAACGTTTCTGAGTGCATAAAAAGCAAAGTTTCATGACAATTTGTTTTATACTGAAGTCATTGGCAAATCAAACTTACTGGTTACGATTTGATTTAAGGTAAAGATTTTATGTTTGTAAATATTTCTGTTAATAAGGCCAGCATTAAGTAGGAAGTGATATTTGTTTTCAATAAAATTCATATTGCAAAATTAACAGTTGCTTTCTTATCTTTGAATGCTTTATCGTA
Unaligned ( gi|27 ): TTTCTTTTAAGTAAGATCAATTAAGCAAGAGAAAAAAATATTCATTGTCAACAAAATTCATATTGCAAAATTTACATGTTCATCACTTCGAAT
Alignments
lowQualScore : 11 111111111 1111111 2222 11111111111 11111111111111 11111111 33333333333333333333333333 222222222222222222222222 22222222222222222222222222 111111 222222 11 333333333 11
lowQualScore : 1 7 6 7 1 33 6 888888888 666 1 6666666 888888 3 3 0000 11111111111 00000000000000 22 8888888888888888 66 1 555555 1 333 1 1 333 2 5 1 88 7777777 7777777 2 2 2 00000000 2 22 22 666666 11111111111111111111111111 222 333 111111111111111111111111 33333333333333333333333333 4444 33 444 2 33 2 66 2 33 0 66666 3 6 3 666666 11 0 0 0 888888 11 3 1 1 44 22 7 1 0 0 3 2 1 4444 2 3 333333333 1 3 1 1 1 1 1 88
lowQualScore : . . . . . .. . ......... ... . ....... ...... . . .... ........... .............. .. ................ .. . ...... . ... . . ... . . . .. ....... ....... . . . ........ . .. .. ...... .......................... ... ... ........................ .......................... .... .. ... . .. . .. . .. . ..... . . . ...... .. . . . ...... .. . . . .. .. . . . . . . . .... . . ......... . . . . . . . ..
lowQualScore : 0 3 7 3 2 22 7 555555555 444 9 2222222 444444 3 1 1111 00000000000 33333333333333 55 8888888888888888 11 8 555555 9 333 9 9 333 0 7 2 44 2222222 2222222 2 4 5 00000000 0 88 66 555555 22222222222222222222222222 777 999 444444444444444444444444 11111111111111111111111111 7777 11 444 7 77 7 33 7 77 5 77777 1 7 2 444444 99 7 8 8 888888 88 2 0 0 22 55 0 0 2 8 2 5 0 5555 5 2 000000000 0 2 0 0 0 0 0 00
consensus : GGGGCGAGTGTGCTTTAGTGGTAAACTATAGGTACTTATTCAGATGTTGCATCCAATCTATGGTCATTTTCACACGATCCACACACTTTTGAAAAGTGTAATCCCATTGGCTTTAGTCAAGGATCAAAGACAAAGTATTGATTTCANAAATAGACATGAAAGCATTTATTTTCCCTACATAATTTGA-GA-AAAATA---AC----ACGNTATTT-------ATAGAT--CA-C-A--ATATACA----A------ATATCTTTATTCAGCAATTAAACATACA------------A-CA--TGTTTATAGCCTA--------C-------ACAAAT--A-CATGAAAATATGAATATA------GTG-A---GAA-CATG-AA---CAATTA-AACCTATCATTAGTTATACCTATAA-CATCAACC-------T-------AGATCAGATTTAC-CAAG-AA-GCACAAA---A----T-T--T--ATT---T--T-----------------------G--T---TTCTT---AATCT------------------------GAA--------------------------AGCAAAAT----AAA--TAAAT---T-TC--G-C--TAAGTTAAGGACAGTAC-GTTTTG--CTATAGAT-----GTCATTAGCATATCGAATTTG-TTTAAGTTTGGCCATCGGCAATAGTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCTGGTAAGAGCTAT-TTTAAACTTTTTCTCCATAT------CGATATTTAAGTAAGACTCTAAGTTAAAAGTGCGCTTGAAACGACAGTAAGATGATAGTCTATTCGAGTTA------TTTATTTCTGNATACNAACTTTGGTNATATATGTCTANGATT-CTGTATTTTATGTGTNCAAAGCTTGTTTGTTCTATATCATACTGATAGAGCCAAATATNTGTCATACCTAAGGTTCGNAATATTGATTTGATTTGAAAA-GC-C-GGTTTGATCCATTATAAGAATTATTNTTATCGGCATCATTTTTTTTTTTGTNTTTCATAAANTTTCTTAACAATATGTTAAGATGGAANAATTATATCATATTAATGGATTAGAATGAAACAAANGCTGTTTACNTGTGTACCTAGTTTATTCAGTGTTTAGATTAAATGATGACGTTATGAAAGTAGACACGTTTCTCAAA
Reference ( family-5166 ) : GGGGCGAGTGTGCTTTAGTGGTAAACTATAGGTACTTATTCAGATGTTGCATCCAATCTATGGTCATTTTCACACGATCCACACACTTTTGAAAAGTGTAATCCCATTGGCTTTAGTCAAGGATCAAAGACAAAGTATTGATTTCANAAATAGACATGAAAGCATTTATTTTCCCTACATAATTTGA-GA-AAAATA---AC----ACGNTATTT-------ATAGAT--CA-C-A--ATATACA----A------ATATCTTTATTCAGCAATTAAACATACA------------A-CA--TGTTTATAGCCTA--------C-------ACAAAT--A-CATGAAAATATGAATATA------GTG-A---GAA-CATG-AA---CAATTA-AACCTATCATTAGTTATACCTATAA-CATCAACC-------T-------AGATCAGATTTAC-CAAG-AA-GCACAAA---A----T-T--T--ATT---T--T-----------------------G--T---TTCTT---AATCT------------------------GAA--------------------------AGCAAAAT----AAA--TAAAT---T-TC--G-C--TAAGTTAAGGACAGTAC-GTTTTG--CTATAGAT-----GTCATTAGCATATCGAATTTG-TTTAAGTTTGGCCATCGGCAATAGTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCTGGTAAGAGCTAT-TTTAAACTTTTTCTCCATAT------CGATATTTAAGTAAGACTCTAAGTTAAAAGTGCGCTTGAAACGACAGTAAGATGATAGTCTATTCGAGTTA------TTTATTTCTGNATACNAACTTTGGTNATATATGTCTANGATT-CTGTATTTTATGTGTNCAAAGCTTGTTTGTTCTATATCATACTGATAGAGCCAAATATNTGTCATACCTAAGGTTCGNAATATTGATTTGATTTGAAAA-GC-C-GGTTTGATCCATTATAAGAATTATTNTTATCGGCATCATTTTTTTTTTTGTNTTTCATAAANTTTCTTAACAATATGTTAAGATGGAANAATTATATCATATTAATGGATTAGAATGAAACAAANGCTGTTTACNTGTGTACCTAGTTTATTCAGTGTTTAGATTAAATGATGACGTTATGAAAGTAGACACGTTTCTCAAA
gi|1 : GGGGCGAGTGTGCTTTAGTGGTAAACTATAAGTACTTATTCAGATGTTGCATCCAATCTATGGTCATTTTCACACGATCCACACACTTTTGAAAAGTGTAATCCCATTGGCTTTAGTCAAGGATCAAAGACAAAGTATTGATTTCATAAATAGACATGAAAGCATTTATTTTCCCTACATAATTTGA-GA-AAAATA---AC----ACACTATTT-------ATAGAT--CA-CCAGTATATACA----A------ATGTCTTTATTTAGCAATTAAGCATACA------------A-CA--TGTTTATAGCCTA--------C-------ACAAAT--A-CATGAAAATATGAATATA------GCG-A---GAA-AATG-AA---CAATTG-AACTTATCATTAGTTATACCTATAA-CACCAACT-------TTATATATAGATCAGATTTAC-CAAG-AA-GCACAAA---A----T-T--T--ATT---T--T-----------------------G--T---TTTTT---AATCT------------------------GAA--------------------------AGCAAAAT----AAA--TAAAT---T-TC--G-C--TAAGTTATGGACAGTAC-GTTTTG--CTATAGAT-----ATCATTAGCATATGGAATTTG-TTTAAGTTTAGTCATCGGCAATAGTTATG
gi|1 : AATCTGGTAAGAGCTAT-TTTAAACTTTTTCTCCATAT------CACAATCTAAGTAGGACTCTAAATTAAAAGTGCACTTGAAACGACAGTAAGATGATAGTCTATTCAAGTTA------TTTATTTCTGAATACACACTTTGGTTATATATGTCTAAGATT-CTGTATTTTATGTGTGCAAAGCTTGTTTGTTCTATATCATACTGATAGAGCCAAATGTCTGTCATACCTAAGGTTTGTAATATTGATTTGATTTGAAAA-GC-CAAGTTTGATCCATTATAAGAATTATTATTATCAGCATCA---TTTTTTTTGTCTTTCATAAATTTTCTTAACAATATGTTAAGATGGAAGAATTATATCATATTAATGGATTAGAATGAAACAAATGCTGTTTACTTGTGTACCTAGTTTATTCAGTGTTTAGATTAAATGATGACGTTATGAAAGTAGACACATTTCTCAAAgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatctggtaagagctattttaaactttttctccatatcacaatctaagtaggactctaaattaaaagtgcacttgaaacgacagtaagatgatagtctattcaagttatttatttctgaatacacactttggttatatatgtctaagattctgtattttatgtgtgcaaagcttgtttgttctatatcatactgatagagccaaatgtctgtcatacctaaggtttgtaatattgatttgatttgaaaagccaagtttgatccattataagaattattattatcagcatcattttttttgtctttcataaattttcttaacaatatgttaagatggaagaattatatcatattaatggattagaatgaaacaaatgctgtttacttgtgtacctagtttattcagtgtttagattaaatgatgacgttatgaaagtagacacatttctcaaa
gi|10 : ggggcgagtgtgctttagtggtaaactataagtacttattcagatgttgcatccaatctatggtcattttcacacgatccacacacttttgaaaagtgtaatcccattggctttagtcaaggatcaaagacaaagtattgatttcataaatagacatgaaagcatttattttccctacataatttgagaaaaataacacactatttatagatcaccagtatatacaaatgtctttatttagcaattaagcatacaacatgtttatagcctacacaaatacatgaaaatatgaatatagcgagaaaatgaacaattgaacttatcattagttatacctataacaccaactttatatatagatcagatttaccaagaagcacaaaatttattttgttttttaatctgaaagcaaaataaataaatttcgctaagttatggacagtacgttttgctatagatatcattagcatatggaatttgtttaagtttagtcatcggcaatagttatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATACA----A------ATATCTCTGTTCTGCAATTAAATATATA------------A-CA--TCTTTATAACCTA--------CACTAGGAACAAAT--A-CAT
gi|10 : a--T-----------------------G--T---TTGTA---AATCT------------------------GAC--------------------------AGCAAAAT----AAA--GAAAT---T-TC--G-C--TAATGTAAGGAC------GTTTTG--CTATAGAT-----GCCATTAGCATATCGACATTG-TTTAAACTTGACCATCGGCAATAGTAATtacaacacctcatcaaaggtgtcatcaaataaccttaaattgtattaagcataaacatgaagctttttttcatgtttgtataaaatgcattattaattaggtgatgtttgtaaatctgacagcaaaataaagaaatttcgctaatgtaaggacgttttgctatagatgccattagcatatcgacattgtttaaacttgaccatcggcaatagtaattatcaattcttaattcgtcatagaagagacaaacaagcaacaca
gi|11 : aatacaaatatctctgttctgcaattaaatatataacatctttataacctacactaggaacaaatacattacaacacctcatcaaaggtgtcatcaaataaccttaaattgtattaagcataaacatgaagctttttttcatgtttgtataaaatgcattattaattaggtgaTCTAAAT------CGACATTTAATAAATACTCTAGGTTAAAATTGTGCTTTAAATGACAGTA------T--TTTTTTCGAATTACATGTATTTACTTCTGACT-CAAACATTGGAGATATATCTCT-TGATTTCAGTGTTTTATGTATTCAAAGCTATTTTGTTCGATATT-TATT-ATGAAGCCCTATACGTGTCATACCTGAGGTCCAAAAACTTGATTT--TTTAAAAT-GCAC-AATTTGATTAATCATAACAATTATTTTTATTAGCGTCATTTATGTTTTtatcaattcttaattcgtcatagaagagacaaacaagcaacaca
gi|12 : caCTTTATTCAGCAATTAAATATACA------------A-CA--TGTTTAAAGTATA--------C-------ATAAAT--A-CATGAAACTATGAATATA------GTG-A---GAA-CATG-CA---CAATTA-AACCTATCATTAGTTATACCAATAA-CATCAACC-------T-------AGATCAGATCTAC-CAAG-AA-ACACAAA---A----T-T--T--ATT---T--G-----------------------C--T---TTTTTAAAAATCTATACATTTGGTTGTTTCTTAATCTGAA--------------------------AGTAAAAT----TAA--TAAAT---T-TC--G-C--TAAGTTAAGAACAGTAC-TTTTTG--CTATAGTT-----GTCATTAGAATATCGAATTGT-TTTAAGTTTGGCCATCAGCAATAGagcaatggtgtaatattttaatcgcaatatctaaagtcataatttaatcata
gi|13 : ATATA----A------ATATCTTTATTCAGCAACTAAACATACA------------G-CA--TGTTTATAGCCCA--------C-------ACAAAT--A-CATGAAAATATGAATATA------ATG-A---GAA-CATG-AA---CAATTT-AACCTATCATTAGTGATACCTATGA-TATTAGC------------------ATT-GATTTAC-CAAG-AA-TTACGAA---C----T-T--T--ATT---T--T-----------------------A--T---TTTT
gi|13 : --T-----------------------G--T---TTCTT---AATCT------------------------GAA--------------------------AGCAAAAT----AAA--TAAAT---T-TC--G-C--TAAGTTAAAGAAAGTAC-GTTTTG--CTTAAGAT-----TCCAATAGCATATCGGATTTG-Tgtttgtatttacatttttatctttacatatggtggtgtttcttaatctgaaagcaaaataaataaatttcgctaagttaaagaaagtacgttttgcttaagattccaatagcatatcggatttgt
gi|14 : atataaatatctttattcagcaactaaacatacagcatgtttatagcccacacaaatacatgaaaatatgaatataatgagaacatgaacaatttaacctatcattagtgatacctatgatattagcattgatttaccaagaattacgaactttattttatttttgtttgtatttacatttttatctttacatatggtggA-C-A--A-ATACA----A------ATATCTTTATTCAGCAATTAAACATACA------------A-TA--TGTTTATAGCCTG--------C-------ACAAAT--AACATGAAAATATTAATATA------GCG-A---GAA-CATG-AA---CAGTTA-AACATATGATAAGTTATACCTATAA-CAT-AACC-------T-------AGATCAGAGTTAC-CAAG-AA-GCACAAA---ATGTAT-T--TGAATT---T--TTTAAAATCTATACATAAGGTTATG--T---TTCTT---AATCT------------------------GAA--------------------------GGCAACAT----AAA--TATAT---
gi|15 : tgatat--ATGTACA----T------ATACATTTATTCAGCAAT-AAACATACA------------G-CACCTGTATATGGCTTAATTTAATAT-------ACACAT--A-TATGAAAATATGAAGACA------GTA-A---GA---ATA-AC---CAATCA-AATCaaacagtataggtgttgaaaacataacgtttcattaattagaattcagttgtttt
gi|15 : t--T-----------------------G--T---TTCTA---AAATT------------------------GAA---------------------------GCAAAAC----AAAATTATAT---A-AC--A-C--TAAATTCAAGACAGTAT-ATTTTT--CTCTTGAT-----ATCATTAGCGTATagatttcatagctgggaaacattttttttaattcttgtttttcaaaataaaaaaagaatttacacctggtataattatattaggtcatgtttctaaaattgaagcaaaacaaaattatataacactaaattcaagacagtatatttttctcttgatatcattagcgtat
gi|17 : tatgtacatatacatttattcagcaataaacatacagcacctgtatatggcttaatttaatatacacatatatgaaaatatgaagacagtaagaataaccaatcaaatcagatttcatagctgggaaacattttttttaattcttgtttttcaaaataaaaaaagaatttacacctggtataattatattaggtcaA--TGTTTATAGCCTA--------C-------ACAAA-----CATGCAAATGTGAGTATA------ATG-A---GGA-CAAG-AA---CAATTA-AACCTATCGTCAGTTATACATATAA-----AATC-------T-------AGATCAGATTTAC-CAAG-AA-GCACAAACTTA----T-T--T--ATT---TA-T-----------------------G--T---TT
gi|17 : CAAAC--A----T-T--A--GTTG--T--T-----------------------G--C---TTCTC---AATCT------------------------GAA--------------------------AGCAAAAT----AAA--gcattaactgtttttttagaccaaacattagttgttgcttctcaatctgaaagcaaaataaagatatgtataatgtataaacat
gi|18 : atgtttatagcctacacaaacatgcaaatgtgagtataatgaggacaagaacaattaaacctatcgtcagttatacatataaaatctagatcagatttaccaagaagcacaaacttatttatttatgtttgcattaactgtttttttagac-A--ATATACA----A------AAATCTTTGTTCAACAATTAAACAAAGA------------A-CA--TGTT----------------------------AAT--A-CATTTAAATATAATTATA------GTG-A---GTA-TATA-AA---CAATCA-AACACATTATTAGTTATACATATCG-AATCCACC-------T-------AACTCAGATTTAC-TAAG-AA-ACACAAA---A----T-T--T--ATT---T--T-----------------------A--T---TTgatatgtataatgtataaacat
gi|19 : atacaAAATAG---TGAAA--------TTTCCC---ATAAATTG--GA-TAAATG---TC----AAATCA----------AAAAAT--CA-T-A--ATA--CA----G------ATATCTTTGTTCAGCAATAAAACATACA------------------TATTTATAGCCTA--------C-------ACAAAT--A-CATGGAAATATGAATATA------GTGNN---NNN-NNNN-NA---TATTTATAGCCTAatgtttgtatttccttttttttgttattatcatgcattatatatta
gi|19 : aattgacggga-AAAACAT--AC----A---TATTT-------ATAGCCTACA-C-A--A-ATACATGGAA------ATATGAATAT--AG----TGNNNNNNNN------------N-NA--TATTTATAGCCTA--------C-------ACAAAT--A-CATGGAAATATGAATATA------GTG-A---GAA-TATG-AA---CAcacaaatacatggaaatatgaatatagtgagaatatgaaca
gi|2 : aattgacgggaaaatagtgaaatttcccataaattggataaatgtcaaatcaaaaaatcataatacagatatctttgttcagcaatGGGGCGAGTGTGCTTTAGTAGTAAACTATAGGTACTTATTCAGATGTTGCATCCAATCTATGGTCATTTTCACACGATTCACACACTTTTGAAAAGTGTAATCCCATTGGCTTTAGTCAAGGATCAAAGACAAAGTATTGATTTCAGAAATAGACATGAAAGCATTTATTTTCCCTACATAATTTGA-GA-AAAATA---AC----ACAATGTTT-------ATAGAT--CACC-AGTATATACA----A------ATGTCTTTATTCAGCAATTAAGCATACA------------A-TA--TGTTTATAGCCTA--------C-------ACAAAT--A-CATGAAAATATGAATATA------GTG-G---GAA-CATG-AA---CAATTG-AACTTATCATTAGTTATACCCATAA-CACCAACTTTATATAT-------AGATCAGATTAAC-CAAG-AA-GCACAAA---A----T-T--T--ATT---T--T-----------------------AT-T---TTTTT---AATCT------------------------GAA--------------------------AGCAAAAT----AAA--TAAAT---T-TC--G-C--TAAGTTAAGGACAGTAC-ATTTTG--CTATAGAT-----GTCATTA-CATATGGAATTTG-TTTAAGTTT
gi|2 : AACCTAGTAAGAGCTAT-TTTAAACTTTTTCTTCATAT------CACAATCTAAGTAGGACTCTAAGTTAAAAGTGCACTTGAAACGACAGTAAGATGATAGTCTATTCAAGTTA------TTTATTTCTGCATACCAACTTTGGTTATATATGTCTAAGATT-CTGTATTTTATGTGTGCAAAGCTTGTTTGTTCTATATCATACTGATAGAGCCAAATATCTGTCATACCTAAGGTTTGTTATATTGATTTGATTTG----------------ATCCATTATAAGAATTATTATTATCGACATCATTTTTTTTTTTGTGTTTCATAAAGTTTCTTAACAATATGTTAAGATGGAACAATTATATCATATTAATGGATTAGAATGAAACAAAGGCTGTTTACATGTGTACCTAGTTTATTCAGTGTTTAGATTAAATGATGACGTTATGAAAGTAG--ACGTTTCTCAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttgccgctttctttggtgagattttcggaagataacctagtaagagctattttaaactttttcttcatatcacaatctaagtaggactctaagttaaaagtgcacttgaaacgacagtaagatgatagtctattcaagttatttatttctgcataccaactttggttatatatgtctaagattctgtattttatgtgtgcaaagcttgtttgttctatatcatactgatagagccaaatatctgtcatacctaaggtttgttatattgatttgatttgatccattataagaattattattatcgacatcatttttttttttgtgtttcataaagtttcttaacaatatgttaagatggaacaattatatcatattaatggattagaatgaaacaaaggctgtttacatgtgtacctagtttattcagtgtttagattaaatgatgacgttatgaaagtagacgtttctcaaa
gi|20 : ggggcgagtgtgctttagtagtaaactataggtacttattcagatgttgcatccaatctatggtcattttcacacgattcacacacttttgaaaagtgtaatcccattggctttagtcaaggatcaaagacaaagtattgatttcagaaatagacatgaaagcatttattttccctacataatttgagaaaaataacacaatgtttatagatcaccagtatatacaaatgtctttattcagcaattaagcatacaatatgtttatagcctacacaaatacatgaaaatatgaatatagtgggaacatgaacaattgaacttatcattagttatacccataacaccaactttatatatagatcagattaaccaagaagcacaaaatttattttatttttttaatctgaaagcaaaataaataaatttcgctaagttaaggacagtacattttgctatagatgtcattacatatggaatttgtttaagtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttgccgctttctttggtgagattttcggaagatA-AAGATATCTAT----GTGATATAT-------ATA-----CA-T-AT-ATATATATGTTA------ATATCTTTAATCATCAATTAAAC-TATA------------A-CA--GGTTTATAGCCTG--------C-------ACTAAT--A-CATAAAAGTATGAATATACATATTGTG-A---GAC-TATA-AA---CAGATA-AACCCATTATTCGTTGTACTTATCA-AATCCACT-------T-------CAACCAGATTTAC-C
gi|21 : ttagaatgcA-C-A--A-ATACA----G------GTATCTCTATACAGCAATTGATCATATA------------A-CA--TGTTTAAAGCCTA--------C-------ACAAAT--G-CATGAAAACA-------A------CTG-A----AA-CTTGTAT---TAACTA-CACCTA-CAT--G-------TATCA-CATCAACC-------T-------AAATCAGATTTAC-TAAG-AC-GCACAAA---T----T-T--T--ATT---C--T-----------------------T--T---Tg
gi|22 : atT-------ATAAAC--TA-C-A--A-ATACA----A------ATATTTTTA----ACAA------ATGC---------------CA--TCTTTATATCTTG--------C-------GCAAAG--A-CATGAAAATATGGAGATA------GTG-A---GAT-TAAA-AA---CAATTA-AACCTATTACTTGTTATATTCATAA-----AATC-------T-------AAATCTGATTTAC-AAAG-Aaatttttttatgcgtttacttactgttt
gi|23 : gaaTATA----G------ATGTATTTATTCAGCAATTAAATAT----------------------GTTTATAGCCTA--------C-------A-ACAT--A--GTGAAAATATGAGTATA------GTG-A---GAA-CATG-A---------A-AACATGTCA--A---------------ATCAATC-------T-------AAATCATACTAAC-CAAG-AA-ACTCAAA---A----T-TCCT--ATT---t
gi|24 : ataaag---TTTTT---AATCT------------------------GAA---------------------------TTAAAAA----AAA---AAAT---T-TTTTG-C--TAAATTAAGGACAGTAT-GTTTTG--TTATAGCT-----TTCATTAGTATATCAAATTTG-TTTAGGattc
gi|25 : ttttactttattttgtataaaatccatgattcgtaaggtgattc---A----T-T--T--ATTAGGT--T-----------------------G--TGTTTTTTT---AATCT------------------------GAA--------------------------AGCAAAAT----AAA--CAAAT---T-TC--G-T--TAAGTTTAGAACACAACAGTATTGAACTAGAGGTTAGTAGTCATT
gi|26 : ttgattttttaaaatctA-C-A--A-ATACA----C------ATAT-TTTAT-AAGAACTCAAATATATA------------A-TA--TGTTTATAACCTA--------A-------ACAAAT--G-CATGAA------AATGTA------ATG-ATTTGAA-CAT---A---TTATTA-CATCTACCg
gi|28 : aaatTT---A--T-----------------------G--T---TTCTT---AATCT------------------------GAA--------------------------AGCAAAAT----ATA--TA
gi|3 : cagcatgttattttttttatttttatttttttaatatatacattaag--ACATACA----A------ATATCTTTATTCAGCAATTAAACATACA------------A-TA--TGTTTATAGCCTA--------C-------ACAAATA-A-CATGAAAATATGACTATA------GTG-A---GAA-CATG-AA---CAATTG-AACCTACCATAAGTTATA-CTATAT-CATCAACC-------T-------AGATCAGATTTAC-CAAGTAA-G-ACAAATGTA----TCT--T--ACT---T--TTTCGGTATATAAATTAGGTTAT-G--T---TTATT---AATCT------------------------GAA--------------------------AGCAAAAT----AAA--TACAT---T-TT--G-CT-TAAGTAAAGAACAGTAC-GTTTTG--CTAAAGTT-----GTC-TTAGCATATCGAATTCG-CTTTAGTTTGGCCATCAGCAGCAGTAATG
gi|3 : acAATCAGGTAAGAGTTAT-TATAAACTGTGTTTATATAT------CGATATTTAAGTTAGACTCTAACTTAAAAGTGTGCTTGAAACGACAGTAAGATGAAAGTCTATTCGAATTA------TTTGTTTTTGTGTAACAAGTTTGGTGATATATGTCTATGATT--TGT-TTTTATGTGTTCAAAACTTATTTGTTCCATATCATACTGATAGAGCAAAATATGTGTCATATCTAAGGTTTTGGATATTGATTTGATTTGAAAATCC-C-GGTTTGATCCATTATAAGAATTATTTTTATCGGTATCATtttaaaatattttgtcttaattctttaaagaatggaccaacaagtaacaagtgatacttattttcaaaaaaaaaatatgttacaaaaattacctatcctttcttttctttgaatagtttcacatcattcgctttctatggcgagaatataggaagtaaatatcaatcaggtaagagttattataaactgtgtttatatatcgatatttaagttagactctaacttaaaagtgtgcttgaaacgacagtaagatgaaagtctattcgaattatttgtttttgtgtaacaagtttggtgatatatgtctatgatttgtttttatgtgttcaaaacttatttgttccatatcatactgatagagcaaaatatgtgtcatatctaaggttttggatattgatttgatttgaaaatcccggtttgatccattataagaattatttttatcggtatcat
gi|4 : acacatacaaatatctttattcagcaattaaacatacaatatgtttatagcctacacaaataacatgaaaatatgactatagtgagaacatgaacaattgaacctaccataagttatactatatcatcaacctagatcagatttaccaagtaagacaaatgtatcttactttttcggtatataaattaggttatgtttattaatctgaaagcaaaataaatacattttgcttaagtaaagaacagtacgttttgctaaagttgtcttagcatatcgaattcgctttagtttggccatcagcagcagtaatgtttaaaatattttgtcttaattctttaaagaatggaccaacaagtaacaagtgatacttattttcaaaaaaaaaatatgttacaaaaattacctatcctttcttttctttgaatagtttcacatcattcgctttctatggcgagaatataggaagtaaatatcA-C-A--A-ATACA----A------CTATGTTTATTCAGCAATTAAACATACATATGTATCCTGTATCC--TGTTTATAGCCTA--------C-------ACACAT--A-CTTGAAAATATGAATATA------GTG-A---GAA-TATG-AA---CAATTT-AACCTAGTA----TCATACCTATCA-AATCAACC-------T-------GAATCAGATTTAC-CAAG-AA-GCACAAG---A----T-T--T--ATT---T--T-----------------------A--T---TT
gi|4 : at----T-T--T--AGT---TAAT-----------------------G--T---TTCTT---GATCT------------------------GAA--------------------------ATCAAGCT----AAA--TTAAT---T-TC--G-CGCTGAATTTAAGACAGTAC-GTTT-G--CTATAGAT-----GTCATTAGCATATCGAATTTG-TTTAGGTTTGGCCATCGGatatttgtatttacttttaattttttcagatctatactttagttaatgtttcttgatctgaaatcaagctaaattaatttcgcgctgaatttaagacagtacgtttgctatagatgtcattagcatatcgaatttgtttaggtttggccatcggttaaagttgtgttttaaatgtttttttgtcttaattatttattaaagggacaatcacgtaggaaattatattcattttcaataaattcgtgctacaaaattaacatgtccttttatttctttgaatattttcgtattaatcgtattctatggcgaaattatgggaggataatctaaatttggtaagagctatttgattttttttctccatataaatatccatatgtaaacaaaactcaaagttcaaaatgtacttgaaatgacagtag
gi|4 : atacaaatacaactatgtttattcagcaattaaacatacatatgtatcctgtatcctgtttatagcctacacacatacttgaaaatatgaatatagtgagaatatgaacaatttaacctagtatcatacctatcaaatcaacctgaatcagatttaccaagaagcacaagatttattttatttatatttgtatttacttttaattttttcagatctatacAATTTGGTAAGAGCTAT-TTGATTTTTTTTCTCCATATAAATATCCATATGTAAACAAAACTCAAAGTTCAAAATGTACTTGAAATGACAGTAttaaagttgtgttttaaatgtttttttgtcttaattatttattaaagggacaatcacgtaggaaattatattcattttcaataaattcgtgctacaaaattaacatgtccttttatttctttgaatattttcgtattaatcgtattctatggcgaaattatgggaggataatctaaatttggtaagagctatttgattttttttctccatataaatatccatatgtaaacaaaactcaaagttcaaaatgtacttgaaatgacagtag
gi|5 : atacaaatacaactatgtttattcagcaattaaacatacatatgtatcctgtatcctgtttatagcctacacacatacttgaaaatatgaatatagtgagaatatgaacaatttaacctagtatcatacctatcaaatcaacctgaatcagatttaccaagaagcacaagatttattttatttatatttgtatttacttttaattttttcagatctatactttagttaatgtttcttgatctgaaatcaagctaaattaatttcgcgctgaatttaagacagtacgtttgctatagatgtcattagcatatcgaatttgtttaggtttggccatcggttaaagttgtgttttaaatgtttttttgtcttaattatttattaaagggacaatcacgtaggaaattatattcattttcaataaattcgtgctacaaaattaacatgtccttttatttctttgaatattttcgtattaatcgtattctatggcgaaattatgggaggataatctaATACA----ATTATCTATATCTATATTCGGCAATTAAAAATACA------------A-CA--TGTTTATATCC-----------------------------ATGAAAATATAAATAAA------GTG-A---GAA-TATG-AA---CAATTA-AACCTATCATTAGTTATA-CTAAAATCATCAACC-------T-------AGATAAGATTTAC-AAAG-AA-GCACAAC---A----T-T--T--ATT---T--G-----------------------A--T---TTTTg
gi|5 : --ATT---G--T-----------------------G--T---TTTTT---AATCT------------------------GAA--------------------------AGGAAAAT----AAA--TAAATAAATATC--G-C--TAAG-TGAGAACATTAC-GTTTTG--AAATAGAT-----GTCATTTACATATCGAA-------TAAGTTTGGCCATCGGCAgttgtatttacttttttttaaatctatacgttagattgtgttttttaatctgaaaggaaaataaataaataaatatcgctaagtgagaacattacgttttgaaatagatgtcatttacatatcgaataagtttggccatcggcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttgccgctttctatggcgagatatgggaggatctaaatctggtcagagctatttaaactttttctccatatcgctattaaagtaagactctaagtaaaaagtg
gi|5 : atacaattatctatatctatattcggcaattaaaaatacaacatgtttatatccatgaaaatataaataaagtgagaatatgaacaattaaacctatcattagttatactaaaatcatcaacctagataagatttacaaagaagcacaacatttatttgatttttgttgtatttacttttttttaaatctatacgttagAATCTGGTCAGAGCTAT-TT-AAACTTTTTCTCCATAT------CGCTATTAAAGTAAGACTCTAAGTAAAAAGTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttgccgctttctatggcgagatatgggaggatctaaatctggtcagagctatttaaactttttctccatatcgctattaaagtaagactctaagtaaaaagtg
gi|6 : atacaattatctatatctatattcggcaattaaaaatacaacatgtttatatccatgaaaatataaataaagtgagaatatgaacaattaaacctatcattagttatactaaaatcatcaacctagataagatttacaaagaagcacaacatttatttgatttttgttgtatttacttttttttaaatctatacgttagattgtgttttttaatctgaaaggaaaataaataaataaatatcgctaagtgagaacattacgttttgaaatagatgtcatttacatatcgaataagtttggccatcggcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttgccgctttctatggcgagatatgggaggatctaCATAGCCTGAAGATAGAATA---ACCGTAACGGTATTTGTATAAAATATAT--GA-C-A--G-ATACA----A------ATATATTTATTCAGTAATTAAACAT-------------------------TATAGCCTA--------T-------ACAAAT--A-CATGAAGGTATGGAGATA------GTG-A---GAA-T-TA-AA---CAATTT-AACATATTACAAGTTTTACCTATCA-AATCAACC-------T-------AAATCAGATTTAT-CAAA-AA-GCGTGAA---T----T-C--C--ATT---T--T-----------------------C--T---T
gi|6 : ATTAAACAATTTAACATATT------------A-CA--AGTTT-TA-CCTA--------T--------CAAATCAA-CCT--AAAT-CAGATTTA------TCA-A---AAAGCGTG-AATTCCATTTT---CTTATCAT-----ATACTT-------TTTACC-------T----------TTTTATTGAT-AAAG-AATGCGTTA-----------T--T--GTT---A--T-----------------------G--T---TTCTT---AATCT------------------------GAA--------------------------ATCAAACT----G--------T---T-TC-------TAAATTAAGGACAGTAC-GTATTG--TTATAGAT-----GTTA-AAGCA--------TTGCCTTAAACTTGGCCATCAGCAATAGatcatatactttttacctttttattgataaagaatgcgttattgttatgtttcttaatctgaaatcaaactgtttctaaattaaggacagtacgtattgttatagatgttaaagcattgccttaaacttggccatcagcaatagatatgtttaaaacacgtctgtgttaattctttattaaagggacaaaacaagtaataaatggtattcgttttcaataaaatgcatgttacaaaattgacatatcccaccatttctttaaatattttgtcaaatcgtcatcatgttttat
gi|7 : catagcctgaagatagaataaccgtaacggtatttgtataaaatatatgacagatacaaatatatttattcagtaattaaacattatagcctatacaaatacatgaaggtatggagatagtgagaTT---A--T-----------------------G--T---TTCTT---AATCT------------------------GAA--------------------------AGCAAAAT----AAA--TAAAT---T-TC--A-T--TAAGTAAAGAACAGTAC-GTATTG--TTGTTATT-----GTCATTATTATATCGAATTTG-TTTAAGTTTGGCCATCGGCAGTTGTAACGatatgtttaaaacacgtctgtgttaattctttattaaagggacaaaacaagtaataaatggtattcgttttcaataaaatgcatgttacaaaattgacatatcccaccatttctttaaatattttgtcaaatcgtcatcatgttttat
gi|7 : attcttttaaaaatcgaaacattaggAATGTGGTAAGAGCTATATTTAAACGTTTTCTCCATAT------CGATATTTAAGCAAGACTGTAAGTTTAAAGTGTGTTTGAAACGACAGTAAGATGATAGTCTATTCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctaccactttctatggcgagatgatgggaggattatctaaatgtggtaagagctatatttaaacgttttctccatatcgatatttaagcaagactgtaagtttaaagtgtgtttgaaacgacagtaagatgatagtctattc
gi|8 : attcttttaaaaatcgaaacattaggttatgtttcttaatctgaaagcaaaataaataaatttcattaagtaaagaacagtacgtattgttgttattgtcattattatatcgaatttgtttaagtttggccatcggcagttgtaacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctaccactttctatggcgagatgatgggaggattatcta----ACGGTATAT-------ACAAAT---A-C-A--A-ATACT----A------ATATCTTTATTCAGCAATTAAACATAC-------------A-CA--TGTTTATAGCCTA--------T-------ACAAATA-A-CATGAAAATATGAACAAA------GTG-A---GAA-CATG-AA---CAATTA-AACCTATCATAAGTTATACCTATAA-AATCAACC-------T-------AGATCAGATTTAC-CAAG-AA-GCACAAA---A----T-T--T--A-T---T--T-----------------------GATT---TTTTT---AATCT------------------------AAACATTAGGTTATGTTTCTTAATCTGAAAGCAAAAT----AAA--TAAAT---T-TC--GCC--CAA--TAA----AGTAC-GTTTTG--CTATATTT-----TTCATTAGCGTATTGAATTTG-TTTAAGTTTGGTCATCGGCAGTAGTAATG
gi|9 : gcgagaacgcaacgaatttaccgACCATTAGTTATACCTATAA-CATCAACC-------T-------AGATCAGATTTACATAAA-AA-GCACAAC---A----T-T--T--ATT---T--TA----------------------A--T---TTCtttaaaatatttttgtcttaattctttatagaagggacaaacaagtaagac
gi|9 : ---A----T-T--T--GGT---TA-T-----------------------G--T---TTCTT---AATCT------------------------GAG--------------------------AGCAAAATAAATAAA--TAAAT---T-TC--A-C--TAAGCTAACAACAGTAT-GTTTTG--CTATAGAT-----GTCATTAGCATATCAAATTTG-TTTTAGTTTAGCCATTGGCAATAGTAATGattttttttttaacccttacatttggttatgtttcttaatctgagagcaaaataaataaataaatttcactaagctaacaacagtatgttttgctatagatgtcattagcatatcaaatttgttttagtttagccattggcaatagtaatgtttaaaaatatttttgccttaattctttaaagaagggacaaacaaataagataaagtaatcaaacccgattatttgatctgatttcacatcatatctttaattactctgttaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ATAATTTAGCTAACGTTTCTGAGTGCATAAAAAGCAAAGTTTCATGACAATTTGTTTTATACTGAAGTCATTGGCAAATCAAACTTACTGGTTACGATTTGATTTAAGGTAAAGATTTTATGTTTGTAAATATTTCTGTTAATAAGGCCAGCATTAAGTAGGAAGTGATATTTGTTTTCAATAAAATTCATATTGCAAAATTAACAGTTGCTTTCTTATCTTTGAATGCTTTATCGTA
Unaligned ( gi|27 ): TTTCTTTTAAGTAAGATCAATTAAGCAAGAGAAAAAAATATTCATTGTCAACAAAATTCATATTGCAAAATTTACATGTTCATCACTTCGAAT