lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 1 1111 2 1 1111 2 444444444444444444 444444444444444444 222222 11 22 2 1 333333333333333333 22222 111 222222222 111 1111 111 222222222 444444444444444 1111 111 11111111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 1 1 1 2222
lowQualScore : 2 8 33 2 1 3 777 2222 6 0 6 3 1 6666 0 3 6 7 6 999999999999999999 99 999999999999999999 1 5 5 222222 2 77 4 77 0 5 00 3 1 5 0 1 0 1 3 6 6 6 2 77 4 555555555555555555 99 5 77777 0 8 3 111 6 666666666 8 1 2 222 11 0 5 5 2222 000 666666666 4 2 666666666666666 5 0 3 4444 000 88888888 6 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 5 7 7 2 6 0 0 4444
lowQualScore : . . .. . . . ... .... . . . . . .... . . . . . .................. .. .................. . . . ...... . .. . .. . . .. . . . . . . . . . . . . .. . .................. .. . ..... . . . ... . ......... . . . ... .. . . . .... ... ......... . . ............... . . . .... ... ........ . ............................................................................................................................. . . . . . . . ....
lowQualScore : 2 0 66 2 2 3 888 1111 7 8 7 7 7 7777 8 5 7 3 7 222222222222222222 22 222222222222222222 7 7 7 000000 3 33 9 44 3 3 11 6 4 7 7 4 7 9 7 7 7 7 6 99 7 444444444444444444 99 7 77777 7 3 5 777 7 777777777 3 7 2 333 33 7 7 7 1111 000 333333333 5 2 777777777777777 7 9 5 2222 000 11111111 7 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 7 0 0 2 0 0 0 0000
consensus : ATGTAACCGGCCGTATAT-TTACGTTATCTCTATTCGGGGAATGTTCAGTTATTACTACAACACTTGTATCCAATTT-ACATCATTTT---AATTTC----CAT-TTAATCATCAAGT-TCATATCTCACAGTTCACTTTAACATTAACTTCTTAATTCTTCTTCAC-TTCAAACGTTCCCTATTTAACTT-TCTTTCTCCTTATTTCCTAACTATCTTAACC------------------TTCACT--TCTCAACC------------------TACTTTCACCTCTT-AA-C-CC-T-CAATCTCTTTTTCCTTACTTAACCTTTCAACCTCCCTTTTCTTACTACCTACAT-ACTTTCATATTTCACACTCTTTCTTCTCAAACTCCTCCCATATTTAGTATCACTCAATCATCTCTCTCATAATCTTTAAACTCCCTAATCAACCTAATTAATCCTTTCTTTCATTGGTCAGTTCCATT-CACTAACTACTNATA--CCNAT---CA-------------CTCAAACAACTTATCATTT-ACACTATACAGGATGTACCCAATTTGTGAC--A--ACTACTATGCAAACATTCTGGCACTAATATTTCCTTCCAGCCCAGGATGTACAAC---ATATGTGACACCTCATGACTAT-AGGCT---------TATTTACTTGTACGCTTTGATAAAACTTAGGATTGTTTATATA-CAA-GTG----ATTATT---TATCTAATC--------NTAATAACTGTATTAATT-------A-------CA-GAAACTTCTAATATAGCAATA----TGGTACAATATTAAATATT---ATTCAT--------AAAAATATTATAAGAATTATTACATGGTTACAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTAGGGGTCCTTTAGAAGGCCTAAGGCCTTACTCATTATAGTGCGGCACAGGATGAATAAAATTAATGCAAGTAAATTTGT-AAAA-AAA---CGTCTCTATATTATTCAAGTTTTTAAGTGCAG
Reference ( gi|1 ) : ATGTAACTGGCCATATAT-TTACGTTATCTCTATTCGGGGAATGTTCAATTATTACTATATCACTTGTATTCAATTT-ACATCATTTT---AATTTC----CAT-TTAATCATCTAGT-TCATATCTCACAGTTCACTTTGACATTAACATCTAAATTCTTCTTTAC-TTCAAATGTTCCCTATTTAACTT-TCTTTCTCCTTATTTCCTAACTATCTTAACC------------------TTCACT--TCTCAACC------------------TACTTTCACCTTTT-AA-C-CC-T-CAATCTCTTTTTCCTTACTTAACCTTTCAACCTTGCTTTTCTTACTACCTACAT-ACTTTCATATTTCACACTCTTTCTTCTCAGACTCCTCCCATATTTAGTATCACTCAATCATCTCTCTCATAGTCTTTAAACTCCCTAA-CAACCTAATGAATCCTTTCTTTCATTGGTCAGTTCCATT-CATTAACTACTTATA--CCAAT---CA-------------CTCAAACAACTTGTCATTT-ACACTATACAGGATGTACCCAATTTGTGAC--A--ACTACTGTGCAAACATTCTGGCACTATTATTTCCTTCCAGCCCAAGATGTACAAC---ATATGTGACACCTCATGACTAT-AGGCT---------TATTTACTAGTACGCTTTGATAAAACTGAGGATTGTTTGTATA-CAA-GTG----ATTATT---TATCTAATC--------ATAATAACTGTATTAATT-------A-------CA-GAAATTTCTAATATAGCAATA----TGGTACAATATTAAATATT---ATTCAT--------AAAAATATTATAAGAATTATTACATGGTGACAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATAAGGGGTCCTTTATAAGGCCTTAGGCCTTACTCATTAAAGTGCGACACAGAATGAATAAAATTAATGCAAGTAAATTTGT-AAAA-AAA---CGTCTCTATATTATTCAAGTTTTTAAGTGCAG
gi|4 : ATGTAACTGGCCATATAT-TTACGTTATCTCTATTCGGGGAATGTTCAATTATTACTATATCACTTGTATTCAATTT-ACATCATTTT---AATTTC----CAT-TTAATCATCAAGA-TCATATCTCACAGTTCACTTTAACATTAACATCTTAATTCTTCTTCAC-TTCAAATGTTCCTTATTTAACTT-TCTTTCTCCTTATTTCCTAACTATCTTAACC------------------TTCACT--TCTCAACC------------------TACTTTCACCTTCT-AA-C-CCCT-CAATCTCTTTTTCCTTACTTAACCTTTCAACCTCCCTTTTCTTACTACCTACAT-ACTTTCATATTTCACACTCTTTCTTCTCAGACTCCTCCCATATTTAGTATCACTCAATCATCTCTCTCATAGTCTTTAAACTCAATAA-CAACCTAATGAATCCTTTCTTTCATTGGTCACTTCCATT-CATTAACTACTTATA--CCAAT---CC-------------CTCAAACAACTTGTCATTT-ACACTATACAGGATGTACCCAATTTGTGAC--A--ACTACTGTGCAAACATTCTGGCACTATTATTTCCTTCCAGCCCAAGATGTACAAC---ATATGTGACACCTCATGACTAT-AGGCT---------TATTTACTTGTACGCTTTGATAAAACTGAGGATTGTTTATATA-CAA-GTG----ATTATT---TATCTAATC--------ATAATAACTGTATTGATT-------A-------CA-GAAATTTGTAATATAGCAATA----TGGTACAATATTAAATATT---ATTCAT--------
gi|20 : gtATGTAACTGACCGTATAT-TTACGTTATCTCTATTTGGGGAGTGTTCAATTATTA
gi|15 : cgaTGTGACTGGCTGTATAT-TTACGTTATCACT--TCAGGGAATGTTCAGTTATTACTATAACACTTGTATCCAATTTAACATCATTTT---AATTTC----
gi|17 : TGTGACTGGCTGTATAT-TTACGTAATCACT--TCAGGGAATGTTCAGTTATTACTACAACACTTTTATCCAATTTAACATCATTTT---atctta
gi|16 : gTGTGACTGGCTGTATAT-TTACGTAATCACT--TCAGGGAATGTTCAGTTATTACTACAACACTTTTATCCAATTTAACATCATTTT---
gi|2 : gGTAATCGGCCGTATAT-TTACGTTATCTCTATTCGGGGAATGTTCAGTTATTACTATAACACTTGTATTCAATTT-ACATCATTTT---AATTTC----CAT-TTAATCATC-AATATCATATCTCACAGTTCACTTTAACATTAACTTCTTAATTCGTCTTCAC-TTCAAATGTTCCCTATTTAACTT-TCTTTCTCCTTATTTCCAAACTAAGTTAACC------------------TTCACT--TCTCAACC------------------TACTTTCATCTCTT-AA-CATC-T-CAATCTCTTT------------CCTTTCAACCTCCCTTTTCTTACTACCTACAT-ACTTTCATATTTCACTCTCTTTCTTCTCAGACTCCTCCCATATTTAGTATCACTCAATCATCTCTCTCATAATCTTTAAACTCCCTAA-CAACCTAATGAATTCTTTCTTTCATTGGTCGGTTCCATT-CATTAACTACTTATA--CCCAT---CA-------------CTCAAACAACTTATCATTT-ACACTATACAGGATGTACCCAATTTGTGAC--A--ACTAATGTGCAAACATTCTGGCACTATTATTTCCATCCAGCCCAGGATGTACAAC---ATACGTGACACCTCATGACTAT-AGGCT---------TATTTACTAGTACACTTTGATAAAACTTAGGATTGTTTATATA-CGA-GTG----ATTATT---TATCTAATC--------TTAATAACTGTATTAATT-------A-------CA-GGAATTTCTAATATAGCAATA----TGGTTTAATATTAAATTTT---ATTCAT--------AAAACTGTCATAAGAATTATTACATGGTTACAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTAGGGGTCCTTTAGAAGGCCTAAGGCCTTGCTCATTATAGTGCGGCACAGGATGAATAAA
gi|5 : GTAATCGGCCGTTTAT-TTACGTTATCTCTATTCGGGGAATGTTCAATTATTACTTTAACACTTGTATTCAATTT-ACATCATTTTTTTATTTTC----CAT-TTAATCATCAATT-TCATA----ACA--------TAACATT-----CTTAATTATTCTTCAC-TTCAAATGTTCCCTACTTAACTT-TCTTTCTCTTTATTTCCTAACTATCTTAACC--------------------------------------------------------TTCACTTCTC-AA-C--------ATA-CTTTCACCT--CTTAACCCTTCAATTTCTCTTTTCTTACT-CCTACAT-ACTTTCATATTGCACACTATTTCTTCTCAAACT---------------ATCACTCAATCATCTCTCTCATAATCTTTAAGCTCCCTAATCAACCTAATTAATCCTTTCTTTCATTGGTCAGTTCCATTACTCTAACTACTAATA--CCAAT---CA-------------CTCAAACAACTTATCATTT-ACACTATACAGGATGTACCCAATTTGTGAC--AGAACTTCTATGCAAACATTCTGGCAGTAATATTTCCTTCCAGTCCAGGATGTACAAC---ATATGTGACACCTCATGACTA----------------TATTTACTTGTGCGCTTTGATAAAACTTAGGATTGCTTATATA-CAA-GTG----ATTATT---CATCCAGTC--------TTAATAATTGTATTAATTACTTTTGA-------CA-GAAACTTCT-ATGTAGCAATA----TGGTACAATATTAAATATT---ATTCAT--------AAAAATATTATAAGAATTATTACAGGGTTACAA
gi|10 : GTAACCTGCCATATAT-TTACGTTATCTCTATTCGGGAAATGTTCAATTATTACTATATCACTTGTATTCAATTT-ACGTCATTTT---AATTTC----CAT-TTAATCATCAAGT-TCATATCTCACAGTTCACTCTAACATTAACTTCTTAATTCTTCTTCAC-TTCAAATGTTCCCTATTTAACTT-TCTTTCTCCTTATTTCCCAACTATCTTAACC------------------TTCACT--TCTCAGCC------------------TACTTTCACCTCTT-AACC-CC-T-CAATCTCTTTTTCCTTACTT-TCCTTTCAACCTCCCTTTCCTTACTACCTTCAT-ACTTACATATTTCACACTCTTTCTTCTAAAACTCCTCCCATATTTAGTATCACTCAATCAT
gi|6 : TATGTTATATTATATCT--TCGGGGAATGTTTATTTATTACTACCACACTTATATCCAATTT-TCATCATTTT---AATATCAACTTAC-TTACTCATCAAGT-TCATATCTTACAATTCACTTTAACATTAACTCCTTAATTCTTCTTCAC-TTCAAACGTTCCCTATTT--TTTCTCTTTCTCCTTATTTCATAGCTATCTTAATCGTAACTTCTCAACCTCCTTTCACTAATCTTAACCCTTCAATCTGATTTCTCTTACTT-CACTCCTT-AA-T-CT-TTCAACCTCCTTTCTCTTACTTTTCCTTTCAACTTCCTTTTTCCTATTACCTACTTTACTTTCATATTTCACAATCTT----CTCAAACTCCTCCCATATTTAGTTTCACTTTATCATCTCTCTCATAATCTTTAAACTCCCTAATCAACCTAATTAATCCTTTCTTTCAATGGTCAGTTCCATT-CACTAACTACTGATA--CCCAT---CA-------------CTCAAACAAATGATTATTT-
gi|9 : atgtgaccggctgtatatacgacgctttgcgttcTATGTTATATTATATTTCTTTGGCGAATGTTCATTTAATACTACAAAACTTGTATCGAATTT-ACATCATTTT---AATAT-----CATCTTAGTCATCAAGT-TAATATCTTACAATTCACTTT-ACCTT--C-TTT-AATTCTCCTTTACATTCTTACGTTTCCTATTT-TCTT-TCATTCTCCTTATTTCCTAACTATTTTAATC------------------TTAACT--TCTCAACC------------------TACTTTCACTTCTTAAA-C-CT-T-CAATCTC---------ATTTA-----TCAA-------------ACTACATACAT-GCTTTCATATTTCACAATCTTTCTTCTCAAGCTCCTCCCATAATAAGTATCACTCAGTCATCTTTTTAATAATCTTTAAATTtctaaatatctgtattaattacttttgacaaaaacttct
gi|3 : gtgaccggcggtatatacgacgctttgcgttcTCACCTTTC-AA-C-T---------TCCTCTTCCTTACTTCATCATTCAAC-TTCCTTTTT------CCTACAT-AATTTCATATTTCACAATCTTTCCTCTCAAACAGTTCCCATATTAAGTATCACTCAATCATCTCTCTCATAATCTTTAAACTCTCTAATCAACCTAAATAATCCTTTCTTTCATTGTTCAGTTCTATT-CACTAACTACTAATAGTCTAATACCCATCTACTACTACTTCTCAAACTACTTATCATTT-ACAGTATACAGGATGTATCCAATTTGTGACAGA--ACTACTATGCAAACATTCTGGCACAAATATTTTCTTCCAGTCCAGGATGTACAACATGATATGTGACACCTCATGACTAT-AAGCT---------TATCTACTTGGACACTT-----------AGGATTTATTGTATA-CAA-GTG----ATTATT---TATCTAGTCTAAAAAATATAATAA--GAATT-ATT-------A-------CATGG---TTACAATATGCCAATAAACTTGTTGTAAACTTAATTATTTCAATTACC--------AACAATATT
gi|11 : ctccttacaTCATCTCTCTCATAATCTTTAAACTCCGTAATCAACCTAATTAATCCTTTATTTCATTGGTCAGTTCAATT-CATT---TACT---------------A-------------CTCAAACAAC-----ATTT-ACACTTTACAGGATGTACCCAATGTGTGAC--AGAACTTCTATGCAAACATTCTGGAACTAATATTTCCTTCCAGCCCAGGATGTACAAC---ATATGTGACACCCCAAGACTCTGAGTCTAAATAACTGTATTTATTAGT----TTTGACAGAA------ACTTCTTATATAGCAATATGGTACACTATTAAATAT-TATTC--------ATAAAAA---TATTAAcacacctactgatttagtaaggttatcaccatgcaacatgtcagtgttcacagttttattgatggtaataattgtttaaaaatcgctttttttttcttaaaaaaagtcatgtttttaaattttacacaaatctcttagtttgtctgatatttactattatattatcacgtaaatggttgcaatacactaatcaaacaattgttatactattttatttagacacagcatttatcagcgattgtttttctacggagtcaaaatggcagtttttgctatttaatcatgttgatta
gi|18 : CTATTAATA--CCCAT---TT-------------GTCAAACATCT-ATCATTTTACATAATACAGGATGAGCCCAATCTGTGACAGA--ACAACTATGaagaattattacatggttaca
gi|7 : TTTTGGCACTAATATTTCCTTCCAGCCCAGGATGTACAAC---AT--GTGACACCTCATGACTTT-AGGCT---------TATTTACTTGTACACTTTGATAAAACTTAGGATTATTAGTATA-CAA-GCG----ATTATT---TATCTAATC--------TTAATAACTGTATTAATT-------A-------CA-GAAATTTCTAATATAGCAATA----TGGTACAATATTAAATATT---ATTCAT--------AAAAATATTATAAGAATTATTACATGGTGACAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTAAGGCCTAACTCATTGTAGTGCAGCACACGATGAATAAAATTAATGCAAGTAAATTTGT-AAAA-AAAAATTATCTCTATATTATTTAAGTTTTTAAGTG
gi|6 : A-CAA-ATG----ATTATT---T-TCTAA-------------ATATCTGTATTAATTACTTTTGA-------CA-AAAACTTCT
gi|11 : atgtgaccggctgtatatacgacgctttgcgttctatgttatattatatcttcggggaatgtttatttattactaccacacttatatccaattttcatcattttaatatcaacttacttactcatcaagttcatatcttacaattcactttaacattaactccttaattcttcttcacttcaaacgttccctattttttctctttctccttatttcatagctatcttaatcgtaacttctcaacctcctttcactaatcttaacccttcaatctgatttctcttacttcactccttaatctttcaacctcctttctcttacttttcctttcaacttcctttttcctattacctactttactttcatatttcacaatcttctcaaactcctcccatatttagtttcactttatcatctctctcataatctttaaactccctaatcaacctaattaatcctttctttcaatggtcagttccattcactaactactgatacccatcactcaaAATAACTGTATTTATT-------AGTTTTGACA-GAAACTTCTTATATAGCAATA----TGGTACACTATTAAATATT---ATTCAT--------AAAAATATTAAAAGAATTATTACATGGTTACA
gi|3 : tcatctctctcataatctttaaactccgtaatcaacctaattaatcctttatttcattggtcagttcaattcatttactactcaaacaacatttacactttacaggatgtacccaatgtgtgacagaacttctatgcaaacattctggaactaatatttccttccagcccaggatgtacaacatatgtgacaccccaagactctgagtctaATT---ATTTATCTAGTCTAAAAAATATAATAAGAATTATTACATGGTTACAAT
gi|12 : ctccttacatcacctttcaacttcctcttccttacttcatcattcaacttcctttttcctacataatttcatatttcacaatctttcctctcaaacagttcccatattaagtatcactcaatcatctctctcataatctttaaactctctaatcaacctaaataatcctttctttcattgttcagttctattcactaactactaatagtctaatacccatctactactacttctcaaactacttatcatttacagtatacaggatgtatccaatttgtgacagaactactatgcaaacattctggcacaaatattttcttccagtccaggatgtacaacatgatatgtgacacctcatgactataagcttatctacttggacacttaggatttattgtatacaagtgTCAT--------AAAAATATTATAAGAATTATTACATGGTGACACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTAAAGCCTTACTCATTATAGTGCGACACAGGATGAATAAAATTAATGCAAGTAAATTTGT-AAAAAAAA---CGTCTCTGTATTATTCAAGTTTTTAAGTGCAGatgccaataaacttgttgtaaacttaattatttcaattaccaacaatattcacacctactgatttagtaaggttatcaccatgcaacatgtcagtgttcacagttttattgatggtaataattgtttaaaaatcgctttttttttcttaaaaaaagtcatgtttttaaattttacacaaatctcttagtttgtctgatatttactattatattatcacgtaaatggttgcaatacactaatcaaacaattgttatactattttatttagacacagcatttatcagcgattgtttttctacggagtcaaaatggcagtttttgctatttaatcatgttgatta
gi|14 : CCTAAGGCCTTACTCATTATAGTGCGGCACAGGATGAATAAAATTAATGCAAGTAAATTTGTAAAAA-AAA---CGTCTCAATATTATTCAAGTTTTTAAGTGCAG
gi|19 : ATGCAAGTAAATTTGT-AAAA-AAA----ATGTCTATATTATACATGTTTTTTAGTTCAG
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): CATAGATTTGCTGATATGCCAATAAACTTGTTGTAAACTTAATTGTTTCAATAACCAATGATGTTCACACTTACTGATTGAGTAAGGTTATCATCAGGTGACATGTCAGTGTTCACAGTTTTATTGATGGCAATAATTGTTTAAAAATCACTTATTTATGTTTGTTAAATTTTACAAAAATCTCCTAAGTTCTCCTGATATTAACTATTAATTTATAATATGACATCACATAAATGTTTGCAATACACAAATCAAACAATTGCTATACTTTTTCATTTAGACACTGCATTTATCAACGACTATTTTTTTAAGGAGCCAAGATGGCGGTTTTGCTGTGCACGCGTTGCATTATACGTTATTGTGTACACAATCGTGACGTCAGTGAAAACAAAGGATA
Unaligned ( gi|13 ): ATTATTATATCGAAAGTCTAAAAAACAAGGTCTAAAATCTTAATTGTTTCAATAACTGGTGATATTCACACCTACGGATAAAAGTTAATCATCAGGCGACATGTCGATATTCACAGTTTTTCTTGATGGTTATAATTGTTTAAAAGTCACCTTTTTCTCAAAATTTTCTTAAAATTTTTACACAAATTTCTAATTTCTACTGAAATTCACCATTATAATATCACGTAAAAGTTTGCAGTACA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222222222222222 1 1111 1 222222222222222222222222 222222222222222222222222222 11111 1 11111111 22222222222 33 111 111111 1111 111111 3333333 1111 111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111
lowQualScore : 666666666666666 3 9999 1 2 777 0000 5 1 0 1 1 5 5 1 5 5 77 5 1 5 5 777777777777777777777777 0 0 888888888888888888888888888 22222 0 2 1 5 88888888 5 2 22222222222 3 5 11 2 000 666666 1 5 5 5 0000 888 7 1 444444 7777777 5 2 4444 111 5 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 2 1 8 8 7777
lowQualScore : ............... . .... . . ... .... . . . . . . . . . . .. . . . . ........................ . . ........................... ..... . . . . ........ . . ........... . . .. . ... ...... . . . . .... ... . . ...... ....... . . .... ... . .......................................................................................................................... . . . . ....
lowQualScore : 444444444444444 6 1111 8 0 000 6666 7 7 1 4 9 7 7 4 0 7 99 7 4 7 0 000000000000000000000000 2 1 888888888888888888888888888 55555 5 0 3 7 11111111 9 8 22222222222 1 0 44 1 000 444444 7 7 0 0 6666 888 6 4 444444 1111111 7 7 2222 777 4 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 8 0 0 2222
consensus : ATGTAACCGGCCGTATAT---------------TTACGTTATCTC-TAT--TCGGGGAATGTTCAGTTATTACTATAACACTTGTATCCAATTT-ACATCATTTT---AATTTC----CAT-TTAATCATCAAGTTCATATCTCACAGTTCACTTTAACATTAACTTC-TTAATTCTTCTTCAC-TTCAAACGTTCCCTATTTAACTT-TCTTTCTCCTTATTTCCTAACTATCTTAACCTTCACTTCTCAACCTACTTTCACC--TCTT-AA-C-CC-TCAATCTCTTTTTCCTTA--------CTTAACCTTTCAACCTCCCTTTTCTTACT----------ACCT-------------ACATACT-----TTCATATTTCACACTCTTTCTTCTCAAACTCCTCCCATATTTAGTATCACTCAATCATCTCTCTCATAATCTTTAAACTCCCTAATCAACCTAATTAATCCTTTCTTTCATTGGTCAGTTCCATT-CACTAACTA--------CTNATACCCATC-A---------CTCAAACAACTTATCATTT-ACACTATACAGGATGTACCCAATTTGTGACAGAACTACTGTGCAAACATTCTGGCACTANTATTTCCTTCCAGCCCAGGATGTACAAC---ATATGTGACACCTCATGACTATAGGCTTA------TTTACTTGTACGCTTTGATA-AAACTTAGGATTGTTTGTATA-CAA-GTG----ATTATT---TATCTAATCNTAATAACTGTATTA------ATT-------ACA-GAAATTTCTAATATAGCAATA----TGGTACAATATTAAATATT---ATTCATAAAAATATTATAAGAATTATTACATGGTGACAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATNAGGGGTCCTTTANAAGGCCTAAGGCCTTACTCATTATAGTGCGGCACAGGATGAATAAAATTAATGCAAGTAAATTTGT-AAAA-AAA---CGTCTCTATATTATTCAAGTTTTTAAGTGCAG
Reference ( family-510 ) : ATGTAACCGGCCGTATAT---------------TTACGTTATCTC-TAT--TCGGGGAATGTTCAGTTATTACTACAACACTTGTATCCAATTT-ACATCATTTT---AATTTC----CAT-TTAATCATCAAGTTCATATCTCACAGTTCACTTTAACATTAACTTC-TTAATTCTTCTTCAC-TTCAAACGTTCCCTATTTAACTT-TCTTTCTCCTTATTTCCTAACTATCTTAACCTTCACTTCTCAACCTACTTTCACC--TCTT-AA-C-CC-TCAATCTCTTTTTCCTTA--------CTTAACCTTTCAACCTCCCTTTTCTTACT----------ACCT-------------ACATACT-----TTCATATTTCACACTCTTTCTTCTCAAACTCCTCCCATATTTAGTATCACTCAATCATCTCTCTCATAATCTTTAAACTCCCTAATCAACCTAATTAATCCTTTCTTTCATTGGTCAGTTCCATT-CACTAACTA--------CTNATACCNATC-A---------CTCAAACAACTTATCATTT-ACACTATACAGGATGTACCCAATTTGTGAC--AACTACTATGCAAACATTCTGGCACTAATATTTCCTTCCAGCCCAGGATGTACAAC---ATATGTGACACCTCATGACTATAGGCTTA------TTTACTTGTACGCTTTGATA-AAACTTAGGATTGTTTATATA-CAA-GTG----ATTATT---TATCTAATCNTAATAACTGTATTA------ATT-------ACA-GAAACTTCTAATATAGCAATA----TGGTACAATATTAAATATT---ATTCATAAAAATATTATAAGAATTATTACATGGTTACAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTAGGGGTCCTTTAGAAGGCCTAAGGCCTTACTCATTATAGTGCGGCACAGGATGAATAAAATTAATGCAAGTAAATTTGT-AAAA-AAA---CGTCTCTATATTATTCAAGTTTTTAAGTGCAG
gi|1 : ATGTAACTGGCCATATAT---------------TTACGTTATCTC-TAT--TCGGGGAATGTTCAATTATTACTATATCACTTGTATTCAATTT-ACATCATTTT---AATTTC----CAT-TTAATCATCTAGTTCATATCTCACAGTTCACTTTGACATTAACATC-TAAATTCTTCTTTAC-TTCAAATGTTCCCTATTTAACTT-TCTTTCTCCTTATTTCCTAACTATCTTAACCTTCACTTCTCAACCTACTTTCACC--TTTT-AA-C-CC-TCAATCTCTTTTTCCTTA--------CTTAACCTTTCAACCTTGCTTTTCTTACT----------ACCT-------------ACATACT-----TTCATATTTCACACTCTTTCTTCTCAGACTCCTCCCATATTTAGTATCACTCAATCATCTCTCTCATAGTCTTTAAACTCCCTAA-CAACCTAATGAATCCTTTCTTTCATTGGTCAGTTCCATT-CATTAACTA--------CTTATACCAATC-A---------CTCAAACAACTTGTCATTT-ACACTATACAGGATGTACCCAATTTGTGAC--AACTACTGTGCAAACATTCTGGCACTATTATTTCCTTCCAGCCCAAGATGTACAAC---ATATGTGACACCTCATGACTATAGGCTTA------TTTACTAGTACGCTTTGATA-AAACTGAGGATTGTTTGTATA-CAA-GTG----ATTATT---TATCTAATCATAATAACTGTATTA------ATT-------ACA-GAAATTTCTAATATAGCAATA----TGGTACAATATTAAATATT---ATTCATAAAAATATTATAAGAATTATTACATGGTGACAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATAAGGGGTCCTTTATAAGGCCTTAGGCCTTACTCATTAAAGTGCGACACAGAATGAATAAAATTAATGCAAGTAAATTTGT-AAAA-AAA---CGTCTCTATATTATTCAAGTTTTTAAGTGCAG
gi|10 : GTAACCTGCCATATAT---------------TTACGTTATCTC-TAT--TCGGGAAATGTTCAATTATTACTATATCACTTGTATTCAATTT-ACGTCATTTT---AATTTC----CAT-TTAATCATCAAGTTCATATCTCACAGTTCACTCTAACATTAACTTC-TTAATTCTTCTTCAC-TTCAAATGTTCCCTATTTAACTT-TCTTTCTCCTTATTTCCCAACTATCTTAACCTTCACTTCTCAGCCTACTTTCACC--TCTT-AACC-CC-TCAATCTCTTTTTCCTTA--------CTT-TCCTTTCAACCTCCCTTTCCTTACT----------ACCT-------------TCATACT-----TACATATTTCACACTCTTTCTTCTAAAACTCCTCCCATATTTAGTATCACTCAATCAT
gi|11 : TCATCTCTCTCATAATCTTTAAACTCCGTAATCAACCTAATTAATCCTTTATTTCATTGGTCAGTTCAATT-CATT---TA--------CT-----------A---------CTCAAACAA-----CATTT-ACACTTTACAGGATGTACCCAATGTGTGACAGAACTTCTATGCAAACATTCTGGAACTAATATTTCCTTCCAGCCCAGGATGTACAAC---ATATGTGACACCCCAAGACTCTGAGTCTAAATAACTGTATTTATTAGTTTTGACAGAAACTT-------CTTATATAGCAATATGGTACACTATTAAATAT-TATTCATAAAAA---TATTA------A
gi|12 : TCATAAAAATATTATAAGAATTATTACATGGTGACACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTAAAGCCTTACTCATTATAGTGCGACACAGGATGAATAAAATTAATGCAAGTAAATTTGT-AAAAAAAA---CGTCTCTGTATTATTCAAGTTTTTAAGTGCAGaagaattattacatggttaca
gi|14 : CCTAAGGCCTTACTCATTATAGTGCGGCACAGGATGAATAAAATTAATGCAAGTAAATTTGTAAAAA-AAA---CGTCTCAATATTATTCAAGTTTTTAAGTGCAG
gi|15 : TGTGACTGGCTGTATAT---------------TTACGTTATCAC-T----TCAGGGAATGTTCAGTTATTACTATAACACTTGTATCCAATTTAACATCATTTT---AATTTC----
gi|16 : TGTGACTGGCTGTATAT---------------TTACGTAATCAC-T----TCAGGGAATGTTCAGTTATTACTACAACACTTTTATCCAATTTAACATCATTTT---atctta
gi|17 : gTGTGACTGGCTGTATAT---------------TTACGTAATCAC-T----TCAGGGAATGTTCAGTTATTACTACAACACTTTTATCCAATTTAACATCATTTT---
gi|18 : gCTA--------TTAATACCCATT-T---------GTCAAACATCT-ATCATTTTACATAATACAGGATGAGCCCAATCTGTGACAGAACAACTATG
gi|19 : ATGCAAGTAAATTTGT-AAAA-AAA----ATGTCTATATTATACATGTTTTTTAGTTCAG
gi|2 : ggatgaagacGTAATCGGCCGTATAT---------------TTACGTTATCTC-TAT--TCGGGGAATGTTCAGTTATTACTATAACACTTGTATTCAATTT-ACATCATTTT---AATTTC----CAT-TTAATCATCAATATCATATCTCACAGTTCACTTTAACATTAACTTC-TTAATTCGTCTTCAC-TTCAAATGTTCCCTATTTAACTT-TCTTTCTCCTTATTTCCAAACTAAGTTAACCTTCACTTCTCAACCTACTTTCATC--TCTT-AA-CATC-TCAATCTCTTT--------------------CCTTTCAACCTCCCTTTTCTTACT----------ACCT-------------ACATACT-----TTCATATTTCACTCTCTTTCTTCTCAGACTCCTCCCATATTTAGTATCACTCAATCATCTCTCTCATAATCTTTAAACTCCCTAA-CAACCTAATGAATTCTTTCTTTCATTGGTCGGTTCCATT-CATTAACTA--------CTTATACCCATC-A---------CTCAAACAACTTATCATTT-ACACTATACAGGATGTACCCAATTTGTGAC--AACTAATGTGCAAACATTCTGGCACTATTATTTCCATCCAGCCCAGGATGTACAAC---ATACGTGACACCTCATGACTATAGGCTTA------TTTACTAGTACACTTTGATA-AAACTTAGGATTGTTTATATA-CGA-GTG----ATTATT---TATCTAATCTTAATAACTGTATTA------ATT-------ACA-GGAATTTCTAATATAGCAATA----TGGTTTAATATTAAATTTT---ATTCATAAAACTGTCATAAGAATTATTACATGGTTACAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTAGGGGTCCTTTAGAAGGCCTAAGGCCTTGCTCATTATAGTGCGGCACAGGATGAATAAA
gi|20 : ATGTAACTGACCGTATAT---------------TTACGTTATCTC-TAT--TTGGGGAGTGTTCAATTATTA
gi|3 : cga-TCAACTTCCTCTTCCTTA--------CTTCATCATTCAACTTCCTTTTTC-----------------CT-------------ACATAAT-----TTCATATTTCACAATCTTTCCTCTCAAACAGTTCCCATATTAAGTATCACTCAATCATCTCTCTCATAATCTTTAAACTCTCTAATCAACCTAAATAATCCTTTCTTTCATTGTTCAGTTCTATT-CACTAACTACTAATAGTCTAATACCCATCTACTACTACTTCTCAAACTACTTATCATTT-ACAGTATACAGGATGTATCCAATTTGTGACAGAACTACTATGCAAACATTCTGGCACAAATATTTTCTTCCAGTCCAGGATGTACAACATGATATGTGACACCTCATGACTATAAGCTTA------TCTACTTGGAC------------ACTTAGGATTTATTGTATA-CAA-GTG----ATTATT---TATCTAGTC-TAAAAAATATAATAAGAATTATT-------ACATGG---TTACAATATGCCAATAAACTTGTTGTAAACTTAATTATTTCAATTACCAACAATATT
gi|4 : ctccttacatcaccttATGTAACTGGCCATATAT---------------TTACGTTATCTC-TAT--TCGGGGAATGTTCAATTATTACTATATCACTTGTATTCAATTT-ACATCATTTT---AATTTC----CAT-TTAATCATCAAGATCATATCTCACAGTTCACTTTAACATTAACATC-TTAATTCTTCTTCAC-TTCAAATGTTCCTTATTTAACTT-TCTTTCTCCTTATTTCCTAACTATCTTAACCTTCACTTCTCAACCTACTTTCACC--TTCT-AACC-CC-TCAATCTCTTTTTCCTTA--------CTTAACCTTTCAACCTCCCTTTTCTTACT----------ACCT-------------ACATACT-----TTCATATTTCACACTCTTTCTTCTCAGACTCCTCCCATATTTAGTATCACTCAATCATCTCTCTCATAGTCTTTAAACTCAATAA-CAACCTAATGAATCCTTTCTTTCATTGGTCACTTCCATT-CATTAACTA--------CTTATACCAATC-C---------CTCAAACAACTTGTCATTT-ACACTATACAGGATGTACCCAATTTGTGAC--AACTACTGTGCAAACATTCTGGCACTATTATTTCCTTCCAGCCCAAGATGTACAAC---ATATGTGACACCTCATGACTATAGGCTTA------TTTACTTGTACGCTTTGATA-AAACTGAGGATTGTTTATATA-CAA-GTG----ATTATT---TATCTAATCATAATAACTGTATTG------ATT-------ACA-GAAATTTGTAATATAGCAATA----TGGTACAATATTAAATATT---ATTCATcacacctactgatttagtaaggttatcaccatgcaacatgtcagtgttcacagttttattgatggtaataattgtttaaaaatcgctttttttttcttaaaaaaagtcatgtttttaaattttacacaaatctcttagtttgtctgatatttactattatattatcacgtaaatggttgcaatacactaatcaaacaattgttatactattttatttagacacagcatttatcagcgattgtttttctacggagtcaaaatggcagtttttgctatttaatcatgttgatta
gi|5 : gtGTAATCGGCCGTTTAT---------------TTACGTTATCTC-TAT--TCGGGGAATGTTCAATTATTACTTTAACACTTGTATTCAATTT-ACATCATTTTTTTATTTTC----CAT-TTAATCATCAATTTCATA----ACA--------TAACATT-----C-TTAATTATTCTTCAC-TTCAAATGTTCCCTACTTAACTT-TCTTTCTCTTTATTTCCTAACTATCTTAACCTTCACTTCTCAACATACTTTCACC--TCTT-AA-C-CC-T----------------------------------TCAATTTCTCTTTTCTTACT-----------CCT-------------ACATACT-----TTCATATTGCACACTATTTCTTCTCAAACT---------------ATCACTCAATCATCTCTCTCATAATCTTTAAGCTCCCTAATCAACCTAATTAATCCTTTCTTTCATTGGTCAGTTCCATTACTCTAACTA--------CTAATACCAATC-A---------CTCAAACAACTTATCATTT-ACACTATACAGGATGTACCCAATTTGTGACAGAACTTCTATGCAAACATTCTGGCAGTAATATTTCCTTCCAGTCCAGGATGTACAAC---ATATGTGACACCTCATGACTA------TA------TTTACTTGTGCGCTTTGATA-AAACTTAGGATTGCTTATATA-CAA-GTG----ATTATT---CATCCAGTCTTAATAATTGTATTA------ATTACTTTTGACA-GAAACTTCT-ATGTAGCAATA----TGGTACAATATTAAATATT---ATTCATAAAAATATTATAAGAATTATTACAGGGTTACAA
gi|6 : ATGTGACCGGCTGTATATACGACGCTTTGCGTTCTATGTTATATTATATCTTCGGGGAATGTTTATTTATTACTACCACACTTATATCCAATTT-TCATCATTTT---AATATCAACTTAC-TTACTCATCAAGTTCATATCTTACAATTCACTTTAACATTAACTCC-TTAATTCTTCTTCAC-TTCAAACGTTCCCTATTT--TTTCTCTTTCTCCTTATTTCATAGCTATCTTAATCGTAACTTCTCAACCTCCTTTCACTAATCTT-AA-C-CCTTCAATCTGATTTCTCTTACTTCACTCCTTAATCTTTCAACCTCCTTTCTCTTACTTTTCCTTTCAACTTCCTTTTTCCTATTACCTACTTTACTTTCATATTTCACAA----TCTTCTCAAACTCCTCCCATATTTAGTTTCACTTTATCATCTCTCTCATAATCTTTAAACTCCCTAATCAACCTAATTAATCCTTTCTTTCAATGGTCAGTTCCATT-CACTAACTA--------CTGATACCCATC-A---------CTCAAACAAATGATTATTT-
gi|6 : A-CAA-ATG----ATTATT---T-TCTAA-----ATATCTGTATTA------ATTACTTTTGACA-AAAACTTCTtctaaatatctgtattaattacttttgacaaaaacttct
gi|7 : atgtgaccggctgtatatacgacgctttgcgttctatgttatattatatcttcggggaatgtttatttattactaccacacttatatccaattttcatcattttaatatcaacttacttactcatcaagttcatatcttacaattcactttaacattaactccttaattcttcttcacttcaaacgttccctattttttctctttctccttatttcatagctatcttaatcgtaacttctcaacctcctttcactaatcttaacccttcaatctgatttctcttacttcactccttaatctttcaacctcctttctcttacttttcctttcaacttcctttttcctattacctactttactttcatatttcacaatcttctcaaactcctcccatatttagtttcactttatcatctctctcataatctttaaactccctaatcaacctaattaatcctttctttcaatggtcagttccattcactaactactgatacccatcactcaaTTTTGGCACTAATATTTCCTTCCAGCCCAGGATGTACAAC---AT--GTGACACCTCATGACTTTAGGCTTA------TTTACTTGTACACTTTGATA-AAACTTAGGATTATTAGTATA-CAA-GCG----ATTATT---TATCTAATCTTAATAACTGTATTA------ATT-------ACA-GAAATTTCTAATATAGCAATA----TGGTACAATATTAAATATT---ATTCATAAAAATATTATAAGAATTATTACATGGTGACAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTAAGGCCTAACTCATTGTAGTGCAGCACACGATGAATAAAATTAATGCAAGTAAATTTGT-AAAA-AAAAATTATCTCTATATTATTTAAGTTTTTAAGTG
gi|9 : TATG--------------TTATATTATATT-TCT--TTGGCGAATGTTCATTTAATACTACAAAACTTGTATCGAATTT-ACATCATTTT---AATAT-----CATCTTAGTCATCAAGTTAATATCTTACAATTCACTTT-AC-----CTTCTTTAATTCTCCTTTACATTCTTACGTTTCCTATTT-TCTT-TCATTCTCCTTATTTCCTAACTATTTTAATCTTAACTTCTCAACCTACTTTCACT--TCTTAAA-C-CT-TCAATCTC---------A--------TTTA-----TCAA-------------ACT----------ACAT-------------ACATGCT-----TTCATATTTCACAATCTTTCTTCTCAAGCTCCTCCCATAATAAGTATCACTCAGTCATCTTTTTAATAATCTTTAAATT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CATAGATTTGCTGATATGCCAATAAACTTGTTGTAAACTTAATTGTTTCAATAACCAATGATGTTCACACTTACTGATTGAGTAAGGTTATCATCAGGTGACATGTCAGTGTTCACAGTTTTATTGATGGCAATAATTGTTTAAAAATCACTTATTTATGTTTGTTAAATTTTACAAAAATCTCCTAAGTTCTCCTGATATTAACTATTAATTTATAATATGACATCACATAAATGTTTGCAATACACAAATCAAACAATTGCTATACTTTTTCATTTAGACACTGCATTTATCAACGACTATTTTTTTAAGGAGCCAAGATGGCGGTTTTGCTGTGCACGCGTTGCATTATACGTTATTGTGTACACAATCGTGACGTCAGTGAAAACAAAGGATA
Unaligned ( gi|13 ): ATTATTATATCGAAAGTCTAAAAAACAAGGTCTAAAATCTTAATTGTTTCAATAACTGGTGATATTCACACCTACGGATAAAAGTTAATCATCAGGCGACATGTCGATATTCACAGTTTTTCTTGATGGTTATAATTGTTTAAAAGTCACCTTTTTCTCAAAATTTTCTTAAAATTTTTACACAAATTTCTAATTTCTACTGAAATTCACCATTATAATATCACGTAAAAGTTTGCAGTACA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222222222222222 1 1111 1 222222222222222222222222 222222222222222222222222222 11111 1 11111111 22222222222 111 111111 1111 111 111111 2222222 1111 111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111
lowQualScore : 666666666666666 3 9999 1 2 777 0000 5 1 0 1 1 5 5 1 5 5 77 5 1 5 5 777777777777777777777777 0 0 888888888888888888888888888 22222 0 2 1 5 88888888 5 2 22222222222 3 5 99 1 000 666666 1 5 5 5 2222 000 6 3 666666 1111111 6 4444 111 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 1 8 8 7777
lowQualScore : ............... . .... . . ... .... . . . . . . . . . . .. . . . . ........................ . . ........................... ..... . . . . ........ . . ........... . . .. . ... ...... . . . . .... ... . . ...... ....... . .... ... ........................................................................................................................ . . . . ....
lowQualScore : 444444444444444 6 1111 8 0 000 6666 7 7 1 4 9 7 7 4 0 7 99 7 4 7 0 000000000000000000000000 2 1 888888888888888888888888888 55555 5 0 3 7 11111111 9 5 22222222222 1 0 33 0 000 444444 7 7 7 7 1111 000 6 0 444444 7777777 7 2222 777 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0 0 2222
consensus : ATGTAACCGGCCGTATAT---------------TTACGTTATCTC-TAT--TCGGGGAATGTTCAGTTATTACTATAACACTTGTATCCAATTT-ACATCATTTT---AATTTC----CAT-TTAATCATCAAGTTCATATCTCACAGTTCACTTTAACATTAACTTC-TTAATTCTTCTTCAC-TTCAAACGTTCCCTATTTAACTT-TCTTTCTCCTTATTTCCTAACTATCTTAACCTTCACTTCTCAACCTACTTTCACC--TCTT-AA-C-CC-TCAATCTCTTTTTCCTTA--------CTTAACCTTTCAACCTCCCTTTTCTTACT----------ACCT-------------ACATACT-----TTCATATTTCACACTCTTTCTTCTCAAACTCCTCCCATATTTAGTATCACTCAATCATCTCTCTCATAATCTTTAAACTCCCTAATCAACCTAATTAATCCTTTCTTTCATTGGTCAGTTCCATT-CACTAACTA--------CTNATACCCATC-A---------CTCAAACAACTTATCATTT-ACACTATACAGGATGTACCCAATTTGTGACAGAACTACTGTGCAAACATTCTGGCACTANTATTTCCTTCCAGCCCAGGATGTACAAC---ATATGTGACACCTCATGACTATAGGCTTA------TTTACTTGTACGCTTTGATA-AAACTTAGGATTGTTTGTATA-CAA-GTG----ATTATT---TATCTAATCNTAATAACTGTATTA------ATT-------ACA-GAAATTTCTAATATAGCAATA----TGGTACAATATTAAATATT---ATTCATAAAAATATTATAAGAATTATTACATGGTGACAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATNAGGGGTCCTTTANAAGGCCTAAGGCCTTACTCATTATAGTGCGGCACAGGATGAATAAAATTAATGCAAGTAAATTTGT-AAAA-AAA---CGTCTCTATATTATTCAAGTTTTTAAGTGCAG
Reference ( family-510 ) : ATGTAACCGGCCGTATAT---------------TTACGTTATCTC-TAT--TCGGGGAATGTTCAGTTATTACTATAACACTTGTATCCAATTT-ACATCATTTT---AATTTC----CAT-TTAATCATCAAGTTCATATCTCACAGTTCACTTTAACATTAACTTC-TTAATTCTTCTTCAC-TTCAAACGTTCCCTATTTAACTT-TCTTTCTCCTTATTTCCTAACTATCTTAACCTTCACTTCTCAACCTACTTTCACC--TCTT-AA-C-CC-TCAATCTCTTTTTCCTTA--------CTTAACCTTTCAACCTCCCTTTTCTTACT----------ACCT-------------ACATACT-----TTCATATTTCACACTCTTTCTTCTCAAACTCCTCCCATATTTAGTATCACTCAATCATCTCTCTCATAATCTTTAAACTCCCTAATCAACCTAATTAATCCTTTCTTTCATTGGTCAGTTCCATT-CACTAACTA--------CTNATACCCATC-A---------CTCAAACAACTTATCATTT-ACACTATACAGGATGTACCCAATTTGTGACAGAACTACTGTGCAAACATTCTGGCACTANTATTTCCTTCCAGCCCAGGATGTACAAC---ATATGTGACACCTCATGACTATAGGCTTA------TTTACTTGTACGCTTTGATA-AAACTTAGGATTGTTTGTATA-CAA-GTG----ATTATT---TATCTAATCNTAATAACTGTATTA------ATT-------ACA-GAAATTTCTAATATAGCAATA----TGGTACAATATTAAATATT---ATTCATAAAAATATTATAAGAATTATTACATGGTGACAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATNAGGGGTCCTTTANAAGGCCTAAGGCCTTACTCATTATAGTGCGGCACAGGATGAATAAAATTAATGCAAGTAAATTTGT-AAAA-AAA---CGTCTCTATATTATTCAAGTTTTTAAGTGCAG
gi|1 : ATGTAACTGGCCATATAT---------------TTACGTTATCTC-TAT--TCGGGGAATGTTCAATTATTACTATATCACTTGTATTCAATTT-ACATCATTTT---AATTTC----CAT-TTAATCATCTAGTTCATATCTCACAGTTCACTTTGACATTAACATC-TAAATTCTTCTTTAC-TTCAAATGTTCCCTATTTAACTT-TCTTTCTCCTTATTTCCTAACTATCTTAACCTTCACTTCTCAACCTACTTTCACC--TTTT-AA-C-CC-TCAATCTCTTTTTCCTTA--------CTTAACCTTTCAACCTTGCTTTTCTTACT----------ACCT-------------ACATACT-----TTCATATTTCACACTCTTTCTTCTCAGACTCCTCCCATATTTAGTATCACTCAATCATCTCTCTCATAGTCTTTAAACTCCCTAA-CAACCTAATGAATCCTTTCTTTCATTGGTCAGTTCCATT-CATTAACTA--------CTTATACCAATC-A---------CTCAAACAACTTGTCATTT-ACACTATACAGGATGTACCCAATTTGTGAC--AACTACTGTGCAAACATTCTGGCACTATTATTTCCTTCCAGCCCAAGATGTACAAC---ATATGTGACACCTCATGACTATAGGCTTA------TTTACTAGTACGCTTTGATA-AAACTGAGGATTGTTTGTATA-CAA-GTG----ATTATT---TATCTAATCATAATAACTGTATTA------ATT-------ACA-GAAATTTCTAATATAGCAATA----TGGTACAATATTAAATATT---ATTCATAAAAATATTATAAGAATTATTACATGGTGACAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATAAGGGGTCCTTTATAAGGCCTTAGGCCTTACTCATTAAAGTGCGACACAGAATGAATAAAATTAATGCAAGTAAATTTGT-AAAA-AAA---CGTCTCTATATTATTCAAGTTTTTAAGTGCAG
gi|10 : GTAACCTGCCATATAT---------------TTACGTTATCTC-TAT--TCGGGAAATGTTCAATTATTACTATATCACTTGTATTCAATTT-ACGTCATTTT---AATTTC----CAT-TTAATCATCAAGTTCATATCTCACAGTTCACTCTAACATTAACTTC-TTAATTCTTCTTCAC-TTCAAATGTTCCCTATTTAACTT-TCTTTCTCCTTATTTCCCAACTATCTTAACCTTCACTTCTCAGCCTACTTTCACC--TCTT-AACC-CC-TCAATCTCTTTTTCCTTA--------CTT-TCCTTTCAACCTCCCTTTCCTTACT----------ACCT-------------TCATACT-----TACATATTTCACACTCTTTCTTCTAAAACTCCTCCCATATTTAGTATCACTCAATCAT
gi|11 : TCATCTCTCTCATAATCTTTAAACTCCGTAATCAACCTAATTAATCCTTTATTTCATTGGTCAGTTCAATT-CATT---TA--------CT-----------A---------CTCAAACAAC-----ATTT-ACACTTTACAGGATGTACCCAATGTGTGACAGAACTTCTATGCAAACATTCTGGAACTAATATTTCCTTCCAGCCCAGGATGTACAAC---ATATGTGACACCCCAAGACTCTGAGTCTAAATAACTGTATTTATTAGTTTTGACAGAAACTT-------CTTATATAGCAATATGGTACACTATTAAATAT-TATTCATAAAAA---TATTA------A
gi|12 : TCATAAAAATATTATAAGAATTATTACATGGTGACACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTAAAGCCTTACTCATTATAGTGCGACACAGGATGAATAAAATTAATGCAAGTAAATTTGT-AAAAAAAA---CGTCTCTGTATTATTCAAGTTTTTAAGTGCAGaagaattattacatggttaca
gi|14 : CCTAAGGCCTTACTCATTATAGTGCGGCACAGGATGAATAAAATTAATGCAAGTAAATTTGTAAAAA-AAA---CGTCTCAATATTATTCAAGTTTTTAAGTGCAG
gi|15 : TGTGACTGGCTGTATAT---------------TTACGTTATCAC-T----TCAGGGAATGTTCAGTTATTACTATAACACTTGTATCCAATTTAACATCATTTT---AATTTC----
gi|16 : TGTGACTGGCTGTATAT---------------TTACGTAATCAC-T----TCAGGGAATGTTCAGTTATTACTACAACACTTTTATCCAATTTAACATCATTTT---atctta
gi|17 : gTGTGACTGGCTGTATAT---------------TTACGTAATCAC-T----TCAGGGAATGTTCAGTTATTACTACAACACTTTTATCCAATTTAACATCATTTT---
gi|18 : gCTA--------TTAATACCCATT-T---------GTCAAACATCT-ATCATTTTACATAATACAGGATGAGCCCAATCTGTGACAGAACAACTATG
gi|19 : ATGCAAGTAAATTTGT-AAAA-AAA----ATGTCTATATTATACATGTTTTTTAGTTCAG
gi|2 : ggatgaagacGTAATCGGCCGTATAT---------------TTACGTTATCTC-TAT--TCGGGGAATGTTCAGTTATTACTATAACACTTGTATTCAATTT-ACATCATTTT---AATTTC----CAT-TTAATCATCAATATCATATCTCACAGTTCACTTTAACATTAACTTC-TTAATTCGTCTTCAC-TTCAAATGTTCCCTATTTAACTT-TCTTTCTCCTTATTTCCAAACTAAGTTAACCTTCACTTCTCAACCTACTTTCATC--TCTT-AA-CATC-TCAATCTCTTT--------------------CCTTTCAACCTCCCTTTTCTTACT----------ACCT-------------ACATACT-----TTCATATTTCACTCTCTTTCTTCTCAGACTCCTCCCATATTTAGTATCACTCAATCATCTCTCTCATAATCTTTAAACTCCCTAA-CAACCTAATGAATTCTTTCTTTCATTGGTCGGTTCCATT-CATTAACTA--------CTTATACCCATC-A---------CTCAAACAACTTATCATTT-ACACTATACAGGATGTACCCAATTTGTGACA--ACTAATGTGCAAACATTCTGGCACTATTATTTCCATCCAGCCCAGGATGTACAAC---ATACGTGACACCTCATGACTATAGGCTTA------TTTACTAGTACACTTTGATA-AAACTTAGGATTGTTTATATA-CGA-GTG----ATTATT---TATCTAATCTTAATAACTGTATTA------ATT-------ACA-GGAATTTCTAATATAGCAATA----TGGTTTAATATTAAATTTT---ATTCATAAAACTGTCATAAGAATTATTACATGGTTACAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTAGGGGTCCTTTAGAAGGCCTAAGGCCTTGCTCATTATAGTGCGGCACAGGATGAATAAA
gi|20 : ATGTAACTGACCGTATAT---------------TTACGTTATCTC-TAT--TTGGGGAGTGTTCAATTATTA
gi|3 : cga-TCAACTTCCTCTTCCTTA--------CTTCATCATTCAACTTCCTTTTTC-----------------CT-------------ACATAAT-----TTCATATTTCACAATCTTTCCTCTCAAACAGTTCCCATATTAAGTATCACTCAATCATCTCTCTCATAATCTTTAAACTCTCTAATCAACCTAAATAATCCTTTCTTTCATTGTTCAGTTCTATT-CACTAACTACTAATAGTCTAATACCCATCTACTACTACTTCTCAAACTACTTATCATTT-ACAGTATACAGGATGTATCCAATTTGTGACAGAACTACTATGCAAACATTCTGGCACAAATATTTTCTTCCAGTCCAGGATGTACAACATGATATGTGACACCTCATGACTATAAGCTTA------TCTACTTGGAC------------ACTTAGGATTTATTGTATA-CAA-GTG----ATTATT---TATCTAGTC-TAAAAAATATAATAAGAATTATT-------ACATGG---TTACAATATGCCAATAAACTTGTTGTAAACTTAATTATTTCAATTACCAACAATATT
gi|4 : ctccttacatcaccttATGTAACTGGCCATATAT---------------TTACGTTATCTC-TAT--TCGGGGAATGTTCAATTATTACTATATCACTTGTATTCAATTT-ACATCATTTT---AATTTC----CAT-TTAATCATCAAGATCATATCTCACAGTTCACTTTAACATTAACATC-TTAATTCTTCTTCAC-TTCAAATGTTCCTTATTTAACTT-TCTTTCTCCTTATTTCCTAACTATCTTAACCTTCACTTCTCAACCTACTTTCACC--TTCT-AACC-CC-TCAATCTCTTTTTCCTTA--------CTTAACCTTTCAACCTCCCTTTTCTTACT----------ACCT-------------ACATACT-----TTCATATTTCACACTCTTTCTTCTCAGACTCCTCCCATATTTAGTATCACTCAATCATCTCTCTCATAGTCTTTAAACTCAATAA-CAACCTAATGAATCCTTTCTTTCATTGGTCACTTCCATT-CATTAACTA--------CTTATACCAATC-C---------CTCAAACAACTTGTCATTT-ACACTATACAGGATGTACCCAATTTGTGAC--AACTACTGTGCAAACATTCTGGCACTATTATTTCCTTCCAGCCCAAGATGTACAAC---ATATGTGACACCTCATGACTATAGGCTTA------TTTACTTGTACGCTTTGATA-AAACTGAGGATTGTTTATATA-CAA-GTG----ATTATT---TATCTAATCATAATAACTGTATTG------ATT-------ACA-GAAATTTGTAATATAGCAATA----TGGTACAATATTAAATATT---ATTCATcacacctactgatttagtaaggttatcaccatgcaacatgtcagtgttcacagttttattgatggtaataattgtttaaaaatcgctttttttttcttaaaaaaagtcatgtttttaaattttacacaaatctcttagtttgtctgatatttactattatattatcacgtaaatggttgcaatacactaatcaaacaattgttatactattttatttagacacagcatttatcagcgattgtttttctacggagtcaaaatggcagtttttgctatttaatcatgttgatta
gi|5 : gtGTAATCGGCCGTTTAT---------------TTACGTTATCTC-TAT--TCGGGGAATGTTCAATTATTACTTTAACACTTGTATTCAATTT-ACATCATTTTTTTATTTTC----CAT-TTAATCATCAATTTCATA----ACA--------TAACATT-----C-TTAATTATTCTTCAC-TTCAAATGTTCCCTACTTAACTT-TCTTTCTCTTTATTTCCTAACTATCTTAACCTTCACTTCTCAACATACTTTCACC--TCTT-AA-C-CC-T----------------------------------TCAATTTCTCTTTTCTTACT-----------CCT-------------ACATACT-----TTCATATTGCACACTATTTCTTCTCAAACT---------------ATCACTCAATCATCTCTCTCATAATCTTTAAGCTCCCTAATCAACCTAATTAATCCTTTCTTTCATTGGTCAGTTCCATTACTCTAACTA--------CTAATACCAATC-A---------CTCAAACAACTTATCATTT-ACACTATACAGGATGTACCCAATTTGTGACAGAACTTCTATGCAAACATTCTGGCAGTAATATTTCCTTCCAGTCCAGGATGTACAAC---ATATGTGACACCTCATGACTA------TA------TTTACTTGTGCGCTTTGATA-AAACTTAGGATTGCTTATATA-CAA-GTG----ATTATT---CATCCAGTCTTAATAATTGTATTA------ATTACTTTTGACA-GAAACTTCT-ATGTAGCAATA----TGGTACAATATTAAATATT---ATTCATAAAAATATTATAAGAATTATTACAGGGTTACAA
gi|6 : ATGTGACCGGCTGTATATACGACGCTTTGCGTTCTATGTTATATTATATCTTCGGGGAATGTTTATTTATTACTACCACACTTATATCCAATTT-TCATCATTTT---AATATCAACTTAC-TTACTCATCAAGTTCATATCTTACAATTCACTTTAACATTAACTCC-TTAATTCTTCTTCAC-TTCAAACGTTCCCTATTT--TTTCTCTTTCTCCTTATTTCATAGCTATCTTAATCGTAACTTCTCAACCTCCTTTCACTAATCTT-AA-C-CCTTCAATCTGATTTCTCTTACTTCACTCCTTAATCTTTCAACCTCCTTTCTCTTACTTTTCCTTTCAACTTCCTTTTTCCTATTACCTACTTTACTTTCATATTTCACAA----TCTTCTCAAACTCCTCCCATATTTAGTTTCACTTTATCATCTCTCTCATAATCTTTAAACTCCCTAATCAACCTAATTAATCCTTTCTTTCAATGGTCAGTTCCATT-CACTAACTA--------CTGATACCCATC-A---------CTCAAACAAATGATTATTT-
gi|7 : TTTTGGCACTAATATTTCCTTCCAGCCCAGGATGTACAAC---AT--GTGACACCTCATGACTTTAGGCTTA------TTTACTTGTACACTTTGATA-AAACTTAGGATTATTAGTATA-CAA-GCG----ATTATT---TATCTAATCTTAATAACTGTATTA------ATT-------ACA-GAAATTTCTAATATAGCAATA----TGGTACAATATTAAATATT---ATTCATAAAAATATTATAAGAATTATTACATGGTGACAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTAAGGCCTAACTCATTGTAGTGCAGCACACGATGAATAAAATTAATGCAAGTAAATTTGT-AAAA-AAAAATTATCTCTATATTATTTAAGTTTTTAAGTGtctaaatatctgtattaattacttttgacaaaaacttct
gi|9 : TATG--------------TTATATTATATT-TCT--TTGGCGAATGTTCATTTAATACTACAAAACTTGTATCGAATTT-ACATCATTTT---AATAT-----CATCTTAGTCATCAAGTTAATATCTTACAATTCACTTT-AC-----CTTCTTTAATTCTCCTTTACATTCTTACGTTTCCTATTT-TCTT-TCATTCTCCTTATTTCCTAACTATTTTAATCTTAACTTCTCAACCTACTTTCACT--TCTTAAA-C-CT-TCAATCTC---------A--------TTTA-----TCAA-------------ACT----------ACAT-------------ACATGCT-----TTCATATTTCACAATCTTTCTTCTCAAGCTCCTCCCATAATAAGTATCACTCAGTCATCTTTTTAATAATCTTTAAATT
blockSeqs : ACGACGCTTTGCGTT A ATCT A A TTT AACT C G A T T A T A C AA A C A T ATTTCTCTTACTTCACTCCTTAAT TTTCCTTTCAACTTCCTTTTTCCTATT TTACT T T A CTAATAGT A C TACTACTACTT T T AG A ATG AATAAC G G G T GTAC AAA A C AGAATT ACTTTTG T AACT TCA NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN N N A A AATT
blockSeqs : G . AT G A . . . G A T . . T A . . . C . . CTCTTCCTTACTTCAT ACCT . T G . . T C A T . AG T . . A . . . . . T A . . . . . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN T G . . C
blockSeqs : . . AT G A . . . G A A . . T A . . . . . . TTTTTCCTTACTTAAC ACCT . T T . . A C T T . AG A . . G . . . . . A C . . . . . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN N N . . C
blockSeqs : . . AT G . . . . A A T . . T A . . . . . . TTTTTCCTTACTTTC ACCT . T G . . T A A T . AG T . . G . . . . . T T . . . . . . . .
blockSeqs : . . AT G . . . . A . T . . C . . . . . . . ATTTA ACAT . . T . . A A C G . A A . . A . . . . . T C . . . . .
blockSeqs : . . AT A . . . . . . . . . C . . . . . . . TTTC CCT . . T . . G C A . . . A . . . . . . . . . . .
blockSeqs : . . CT A . . . . . CT . . . . A . .
blockSeqs : . . . A . .
blockSeqs : . . . T . .
blockSeqs : . . . T
blockSeqCons : AG
originalCons : ATGTAACCGGCCGTATAT---------------TTACGTTATCTC-TAT--TCGGGGAATGTTCAGTTATTACTATAACACTTGTATCCAATTT-ACATCATTTT---AATTTC----CAT-TTAATCATCAAGTTCATATCTCACAGTTCACTTTAACATTAACTTC-TTAATTCTTCTTCAC-TTCAAACGTTCCCTATTTAACTT-TCTTTCTCCTTATTTCCTAACTATCTTAACCTTCACTTCTCAACCTACTTTCACC--TCTT-AA-C-CC-TCAATCTCTTTTTCCTTA--------CTTAACCTTTCAACCTCCCTTTTCTTACT----------ACCT-------------ACATACT-----TTCATATTTCACACTCTTTCTTCTCAAACTCCTCCCATATTTAGTATCACTCAATCATCTCTCTCATAATCTTTAAACTCCCTAATCAACCTAATTAATCCTTTCTTTCATTGGTCAGTTCCATT-CACTAACTA--------CTNATACCCATC-A---------CTCAAACAACTTATCATTT-ACACTATACAGGATGTACCCAATTTGTGACAGAACTACTGTGCAAACATTCTGGCACTANTATTTCCTTCCAGCCCAGGATGTACAAC---ATATGTGACACCTCATGACTATAGGCTTA------TTTACTTGTACGCTTTGATA-AAACTTAGGATTGTTTGTATA-CAA-GTG----ATTATT---TATCTAATCNTAATAACTGTATTA------ATT-------ACA-GAAATTTCTAATATAGCAATA----TGGTACAATATTAAATATT---ATTCATAAAAATATTATAAGAATTATTACATGGTGACAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATNAGGGGTCCTTTANAAGGCCTAAGGCCTTACTCATTATAGTGCGGCACAGGATGAATAAAATTAATGCAAGTAAATTTGT-AAAA-AAA---CGTCTCTATATTATTCAAGTTTTTAAGTGCAG
finalCons : ATGTAACCGGCCGTATAT---------------TTACGTTATCTC-TAT--TCGGGGAATGTTCAGTTATTACTATAACACTTGTATCCAATTT-ACATCATTTT---AATTTC----CAT-TTAATCATCAAGTTCATATCTCACAGTTCACTTTAACATTAACTTC-TTAATTCTTCTTCAC-TTCAAACGTTCCCTATTTAACTT-TCTTTCTCCTTATTTCCTAACTATCTTAACCTTCACTTCTCAACCTACTTTCACC--TCTT-AA-C-CC-TCAATCTCTTTTTCCTTA--------CTTAACCTTTCAACCTCCCTTTTCTTACT----------ACCT-------------ACATACT-----TTCATATTTCACACTCTTTCTTCTCAAACTCCTCCCATATTTAGTATCACTCAATCATCTCTCTCATAATCTTTAAACTCCCTAATCAACCTAATTAATCCTTTCTTTCATTGGTCAGTTCCATT-CACTAACTA--------CTNATACCCATC-A---------CTCAAACAACTTATCATTT-ACACTATACAGGATGTACCCAATTTGTGACAGAACTACTGTGCAAACATTCTGGCACTANTATTTCCTTCCAGCCCAGGATGTACAAC---ATATGTGACACCTCATGACTATAGGCTTA------TTTACTTGTACGCTTTGATA-AAACTTAGGATTGTTTGTATA-CAA-GTG----ATTATT---TATCTAATCNTAATAACTGTATTA------ATT-------ACA-GAAATTTCTAATATAGCAATA----TGGTACAATATTAAATATT---ATTCATAAAAATATTATAAGAATTATTACATGGTGACAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATNAGGGGTCCTTTANAAGGCCTAAGGCCTTACTCATTATAGTGCGGCACAGGATGAATAAAATTAATGCAAGTAAATTTGT-AAAA-AAA---CGTCTCTATATTATTCAAGTTTTTAAGTGCAG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CATAGATTTGCTGATATGCCAATAAACTTGTTGTAAACTTAATTGTTTCAATAACCAATGATGTTCACACTTACTGATTGAGTAAGGTTATCATCAGGTGACATGTCAGTGTTCACAGTTTTATTGATGGCAATAATTGTTTAAAAATCACTTATTTATGTTTGTTAAATTTTACAAAAATCTCCTAAGTTCTCCTGATATTAACTATTAATTTATAATATGACATCACATAAATGTTTGCAATACACAAATCAAACAATTGCTATACTTTTTCATTTAGACACTGCATTTATCAACGACTATTTTTTTAAGGAGCCAAGATGGCGGTTTTGCTGTGCACGCGTTGCATTATACGTTATTGTGTACACAATCGTGACGTCAGTGAAAACAAAGGATA
Unaligned ( gi|13 ): ATTATTATATCGAAAGTCTAAAAAACAAGGTCTAAAATCTTAATTGTTTCAATAACTGGTGATATTCACACCTACGGATAAAAGTTAATCATCAGGCGACATGTCGATATTCACAGTTTTTCTTGATGGTTATAATTGTTTAAAAGTCACCTTTTTCTCAAAATTTTCTTAAAATTTTTACACAAATTTCTAATTTCTACTGAAATTCACCATTATAATATCACGTAAAAGTTTGCAGTACA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222222222222222 1 1111 1 222222222222222222222222 222222222222222222222222222 11111 1 11111111 22222222222 111 111111 1111 111 111111 2222222 1111 111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111
lowQualScore : 666666666666666 3 9999 1 2 777 0000 5 1 0 1 1 5 5 1 5 5 77 5 1 5 5 777777777777777777777777 0 0 888888888888888888888888888 22222 0 2 1 5 88888888 5 2 22222222222 3 5 99 1 000 666666 1 5 5 5 2222 000 6 3 666666 1111111 6 4444 111 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 1 8 8 7777
lowQualScore : ............... . .... . . ... .... . . . . . . . . . . .. . . . . ........................ . . ........................... ..... . . . . ........ . . ........... . . .. . ... ...... . . . . .... ... . . ...... ....... . .... ... ........................................................................................................................ . . . . ....
lowQualScore : 444444444444444 6 1111 8 0 000 6666 7 7 1 4 9 7 7 4 0 7 99 7 4 7 0 000000000000000000000000 2 1 888888888888888888888888888 55555 5 0 3 7 11111111 9 5 22222222222 1 0 33 0 000 444444 7 7 7 7 1111 000 6 0 444444 7777777 7 2222 777 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0 0 2222
consensus : ATGTAACCGGCCGTATAT---------------TTACGTTATCTC-TAT--TCGGGGAATGTTCAGTTATTACTATAACACTTGTATCCAATTT-ACATCATTTT---AATTTC----CAT-TTAATCATCAAGTTCATATCTCACAGTTCACTTTAACATTAACTTC-TTAATTCTTCTTCAC-TTCAAACGTTCCCTATTTAACTT-TCTTTCTCCTTATTTCCTAACTATCTTAACCTTCACTTCTCAACCTACTTTCACC--TCTT-AA-C-CC-TCAATCTCTTTTTCCTTA--------CTTAACCTTTCAACCTCCCTTTTCTTACT----------ACCT-------------ACATACT-----TTCATATTTCACACTCTTTCTTCTCAAACTCCTCCCATATTTAGTATCACTCAATCATCTCTCTCATAATCTTTAAACTCCCTAATCAACCTAATTAATCCTTTCTTTCATTGGTCAGTTCCATT-CACTAACTA--------CTNATACCCATC-A---------CTCAAACAACTTATCATTT-ACACTATACAGGATGTACCCAATTTGTGACAGAACTACTGTGCAAACATTCTGGCACTANTATTTCCTTCCAGCCCAGGATGTACAAC---ATATGTGACACCTCATGACTATAGGCTTA------TTTACTTGTACGCTTTGATA-AAACTTAGGATTGTTTGTATA-CAA-GTG----ATTATT---TATCTAATCNTAATAACTGTATTA------ATT-------ACA-GAAATTTCTAATATAGCAATA----TGGTACAATATTAAATATT---ATTCATAAAAATATTATAAGAATTATTACATGGTGACAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATNAGGGGTCCTTTANAAGGCCTAAGGCCTTACTCATTATAGTGCGGCACAGGATGAATAAAATTAATGCAAGTAAATTTGT-AAAA-AAA---CGTCTCTATATTATTCAAGTTTTTAAGTGCAG
Reference ( family-510 ) : ATGTAACCGGCCGTATAT---------------TTACGTTATCTC-TAT--TCGGGGAATGTTCAGTTATTACTATAACACTTGTATCCAATTT-ACATCATTTT---AATTTC----CAT-TTAATCATCAAGTTCATATCTCACAGTTCACTTTAACATTAACTTC-TTAATTCTTCTTCAC-TTCAAACGTTCCCTATTTAACTT-TCTTTCTCCTTATTTCCTAACTATCTTAACCTTCACTTCTCAACCTACTTTCACC--TCTT-AA-C-CC-TCAATCTCTTTTTCCTTA--------CTTAACCTTTCAACCTCCCTTTTCTTACT----------ACCT-------------ACATACT-----TTCATATTTCACACTCTTTCTTCTCAAACTCCTCCCATATTTAGTATCACTCAATCATCTCTCTCATAATCTTTAAACTCCCTAATCAACCTAATTAATCCTTTCTTTCATTGGTCAGTTCCATT-CACTAACTA--------CTNATACCCATC-A---------CTCAAACAACTTATCATTT-ACACTATACAGGATGTACCCAATTTGTGACAGAACTACTGTGCAAACATTCTGGCACTANTATTTCCTTCCAGCCCAGGATGTACAAC---ATATGTGACACCTCATGACTATAGGCTTA------TTTACTTGTACGCTTTGATA-AAACTTAGGATTGTTTGTATA-CAA-GTG----ATTATT---TATCTAATCNTAATAACTGTATTA------ATT-------ACA-GAAATTTCTAATATAGCAATA----TGGTACAATATTAAATATT---ATTCATAAAAATATTATAAGAATTATTACATGGTGACAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATNAGGGGTCCTTTANAAGGCCTAAGGCCTTACTCATTATAGTGCGGCACAGGATGAATAAAATTAATGCAAGTAAATTTGT-AAAA-AAA---CGTCTCTATATTATTCAAGTTTTTAAGTGCAG
gi|1 : ATGTAACTGGCCATATAT---------------TTACGTTATCTC-TAT--TCGGGGAATGTTCAATTATTACTATATCACTTGTATTCAATTT-ACATCATTTT---AATTTC----CAT-TTAATCATCTAGTTCATATCTCACAGTTCACTTTGACATTAACATC-TAAATTCTTCTTTAC-TTCAAATGTTCCCTATTTAACTT-TCTTTCTCCTTATTTCCTAACTATCTTAACCTTCACTTCTCAACCTACTTTCACC--TTTT-AA-C-CC-TCAATCTCTTTTTCCTTA--------CTTAACCTTTCAACCTTGCTTTTCTTACT----------ACCT-------------ACATACT-----TTCATATTTCACACTCTTTCTTCTCAGACTCCTCCCATATTTAGTATCACTCAATCATCTCTCTCATAGTCTTTAAACTCCCTAA-CAACCTAATGAATCCTTTCTTTCATTGGTCAGTTCCATT-CATTAACTA--------CTTATACCAATC-A---------CTCAAACAACTTGTCATTT-ACACTATACAGGATGTACCCAATTTGTGAC--AACTACTGTGCAAACATTCTGGCACTATTATTTCCTTCCAGCCCAAGATGTACAAC---ATATGTGACACCTCATGACTATAGGCTTA------TTTACTAGTACGCTTTGATA-AAACTGAGGATTGTTTGTATA-CAA-GTG----ATTATT---TATCTAATCATAATAACTGTATTA------ATT-------ACA-GAAATTTCTAATATAGCAATA----TGGTACAATATTAAATATT---ATTCATAAAAATATTATAAGAATTATTACATGGTGACAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATAAGGGGTCCTTTATAAGGCCTTAGGCCTTACTCATTAAAGTGCGACACAGAATGAATAAAATTAATGCAAGTAAATTTGT-AAAA-AAA---CGTCTCTATATTATTCAAGTTTTTAAGTGCAG
gi|10 : GTAACCTGCCATATAT---------------TTACGTTATCTC-TAT--TCGGGAAATGTTCAATTATTACTATATCACTTGTATTCAATTT-ACGTCATTTT---AATTTC----CAT-TTAATCATCAAGTTCATATCTCACAGTTCACTCTAACATTAACTTC-TTAATTCTTCTTCAC-TTCAAATGTTCCCTATTTAACTT-TCTTTCTCCTTATTTCCCAACTATCTTAACCTTCACTTCTCAGCCTACTTTCACC--TCTT-AACC-CC-TCAATCTCTTTTTCCTTA--------CTT-TCCTTTCAACCTCCCTTTCCTTACT----------ACCT-------------TCATACT-----TACATATTTCACACTCTTTCTTCTAAAACTCCTCCCATATTTAGTATCACTCAATCAT
gi|11 : TCATCTCTCTCATAATCTTTAAACTCCGTAATCAACCTAATTAATCCTTTATTTCATTGGTCAGTTCAATT-CATT---TA--------CT-----------A---------CTCAAACAAC-----ATTT-ACACTTTACAGGATGTACCCAATGTGTGACAGAACTTCTATGCAAACATTCTGGAACTAATATTTCCTTCCAGCCCAGGATGTACAAC---ATATGTGACACCCCAAGACTCTGAGTCTAAATAACTGTATTTATTAGTTTTGACAGAAACTT-------CTTATATAGCAATATGGTACACTATTAAATAT-TATTCATAAAAA---TATTA------A
gi|12 : TCATAAAAATATTATAAGAATTATTACATGGTGACACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTAAAGCCTTACTCATTATAGTGCGACACAGGATGAATAAAATTAATGCAAGTAAATTTGT-AAAAAAAA---CGTCTCTGTATTATTCAAGTTTTTAAGTGCAGaagaattattacatggttaca
gi|14 : CCTAAGGCCTTACTCATTATAGTGCGGCACAGGATGAATAAAATTAATGCAAGTAAATTTGTAAAAA-AAA---CGTCTCAATATTATTCAAGTTTTTAAGTGCAG
gi|15 : TGTGACTGGCTGTATAT---------------TTACGTTATCAC-T----TCAGGGAATGTTCAGTTATTACTATAACACTTGTATCCAATTTAACATCATTTT---AATTTC----
gi|16 : TGTGACTGGCTGTATAT---------------TTACGTAATCAC-T----TCAGGGAATGTTCAGTTATTACTACAACACTTTTATCCAATTTAACATCATTTT---atctta
gi|17 : gTGTGACTGGCTGTATAT---------------TTACGTAATCAC-T----TCAGGGAATGTTCAGTTATTACTACAACACTTTTATCCAATTTAACATCATTTT---
gi|18 : gCTA--------TTAATACCCATT-T---------GTCAAACATCT-ATCATTTTACATAATACAGGATGAGCCCAATCTGTGACAGAACAACTATG
gi|19 : ATGCAAGTAAATTTGT-AAAA-AAA----ATGTCTATATTATACATGTTTTTTAGTTCAG
gi|2 : ggatgaagacGTAATCGGCCGTATAT---------------TTACGTTATCTC-TAT--TCGGGGAATGTTCAGTTATTACTATAACACTTGTATTCAATTT-ACATCATTTT---AATTTC----CAT-TTAATCATCAATATCATATCTCACAGTTCACTTTAACATTAACTTC-TTAATTCGTCTTCAC-TTCAAATGTTCCCTATTTAACTT-TCTTTCTCCTTATTTCCAAACTAAGTTAACCTTCACTTCTCAACCTACTTTCATC--TCTT-AA-CATC-TCAATCTCTTT--------------------CCTTTCAACCTCCCTTTTCTTACT----------ACCT-------------ACATACT-----TTCATATTTCACTCTCTTTCTTCTCAGACTCCTCCCATATTTAGTATCACTCAATCATCTCTCTCATAATCTTTAAACTCCCTAA-CAACCTAATGAATTCTTTCTTTCATTGGTCGGTTCCATT-CATTAACTA--------CTTATACCCATC-A---------CTCAAACAACTTATCATTT-ACACTATACAGGATGTACCCAATTTGTGACA--ACTAATGTGCAAACATTCTGGCACTATTATTTCCATCCAGCCCAGGATGTACAAC---ATACGTGACACCTCATGACTATAGGCTTA------TTTACTAGTACACTTTGATA-AAACTTAGGATTGTTTATATA-CGA-GTG----ATTATT---TATCTAATCTTAATAACTGTATTA------ATT-------ACA-GGAATTTCTAATATAGCAATA----TGGTTTAATATTAAATTTT---ATTCATAAAACTGTCATAAGAATTATTACATGGTTACAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTAGGGGTCCTTTAGAAGGCCTAAGGCCTTGCTCATTATAGTGCGGCACAGGATGAATAAA
gi|20 : ATGTAACTGACCGTATAT---------------TTACGTTATCTC-TAT--TTGGGGAGTGTTCAATTATTA
gi|3 : cga-TCAACTTCCTCTTCCTTA--------CTTCATCATTCAACTTCCTTTTTC-----------------CT-------------ACATAAT-----TTCATATTTCACAATCTTTCCTCTCAAACAGTTCCCATATTAAGTATCACTCAATCATCTCTCTCATAATCTTTAAACTCTCTAATCAACCTAAATAATCCTTTCTTTCATTGTTCAGTTCTATT-CACTAACTACTAATAGTCTAATACCCATCTACTACTACTTCTCAAACTACTTATCATTT-ACAGTATACAGGATGTATCCAATTTGTGACAGAACTACTATGCAAACATTCTGGCACAAATATTTTCTTCCAGTCCAGGATGTACAACATGATATGTGACACCTCATGACTATAAGCTTA------TCTACTTGGAC------------ACTTAGGATTTATTGTATA-CAA-GTG----ATTATT---TATCTAGTC-TAAAAAATATAATAAGAATTATT-------ACATGG---TTACAATATGCCAATAAACTTGTTGTAAACTTAATTATTTCAATTACCAACAATATT
gi|4 : ctccttacatcaccttATGTAACTGGCCATATAT---------------TTACGTTATCTC-TAT--TCGGGGAATGTTCAATTATTACTATATCACTTGTATTCAATTT-ACATCATTTT---AATTTC----CAT-TTAATCATCAAGATCATATCTCACAGTTCACTTTAACATTAACATC-TTAATTCTTCTTCAC-TTCAAATGTTCCTTATTTAACTT-TCTTTCTCCTTATTTCCTAACTATCTTAACCTTCACTTCTCAACCTACTTTCACC--TTCT-AACC-CC-TCAATCTCTTTTTCCTTA--------CTTAACCTTTCAACCTCCCTTTTCTTACT----------ACCT-------------ACATACT-----TTCATATTTCACACTCTTTCTTCTCAGACTCCTCCCATATTTAGTATCACTCAATCATCTCTCTCATAGTCTTTAAACTCAATAA-CAACCTAATGAATCCTTTCTTTCATTGGTCACTTCCATT-CATTAACTA--------CTTATACCAATC-C---------CTCAAACAACTTGTCATTT-ACACTATACAGGATGTACCCAATTTGTGAC--AACTACTGTGCAAACATTCTGGCACTATTATTTCCTTCCAGCCCAAGATGTACAAC---ATATGTGACACCTCATGACTATAGGCTTA------TTTACTTGTACGCTTTGATA-AAACTGAGGATTGTTTATATA-CAA-GTG----ATTATT---TATCTAATCATAATAACTGTATTG------ATT-------ACA-GAAATTTGTAATATAGCAATA----TGGTACAATATTAAATATT---ATTCATcacacctactgatttagtaaggttatcaccatgcaacatgtcagtgttcacagttttattgatggtaataattgtttaaaaatcgctttttttttcttaaaaaaagtcatgtttttaaattttacacaaatctcttagtttgtctgatatttactattatattatcacgtaaatggttgcaatacactaatcaaacaattgttatactattttatttagacacagcatttatcagcgattgtttttctacggagtcaaaatggcagtttttgctatttaatcatgttgatta
gi|5 : gtGTAATCGGCCGTTTAT---------------TTACGTTATCTC-TAT--TCGGGGAATGTTCAATTATTACTTTAACACTTGTATTCAATTT-ACATCATTTTTTTATTTTC----CAT-TTAATCATCAATTTCATA----ACA--------TAACATT-----C-TTAATTATTCTTCAC-TTCAAATGTTCCCTACTTAACTT-TCTTTCTCTTTATTTCCTAACTATCTTAACCTTCACTTCTCAACATACTTTCACC--TCTT-AA-C-CC-T----------------------------------TCAATTTCTCTTTTCTTACT-----------CCT-------------ACATACT-----TTCATATTGCACACTATTTCTTCTCAAACT---------------ATCACTCAATCATCTCTCTCATAATCTTTAAGCTCCCTAATCAACCTAATTAATCCTTTCTTTCATTGGTCAGTTCCATTACTCTAACTA--------CTAATACCAATC-A---------CTCAAACAACTTATCATTT-ACACTATACAGGATGTACCCAATTTGTGACAGAACTTCTATGCAAACATTCTGGCAGTAATATTTCCTTCCAGTCCAGGATGTACAAC---ATATGTGACACCTCATGACTA------TA------TTTACTTGTGCGCTTTGATA-AAACTTAGGATTGCTTATATA-CAA-GTG----ATTATT---CATCCAGTCTTAATAATTGTATTA------ATTACTTTTGACA-GAAACTTCT-ATGTAGCAATA----TGGTACAATATTAAATATT---ATTCATAAAAATATTATAAGAATTATTACAGGGTTACAA
gi|6 : ATGTGACCGGCTGTATATACGACGCTTTGCGTTCTATGTTATATTATATCTTCGGGGAATGTTTATTTATTACTACCACACTTATATCCAATTT-TCATCATTTT---AATATCAACTTAC-TTACTCATCAAGTTCATATCTTACAATTCACTTTAACATTAACTCC-TTAATTCTTCTTCAC-TTCAAACGTTCCCTATTT--TTTCTCTTTCTCCTTATTTCATAGCTATCTTAATCGTAACTTCTCAACCTCCTTTCACTAATCTT-AA-C-CCTTCAATCTGATTTCTCTTACTTCACTCCTTAATCTTTCAACCTCCTTTCTCTTACTTTTCCTTTCAACTTCCTTTTTCCTATTACCTACTTTACTTTCATATTTCACAA----TCTTCTCAAACTCCTCCCATATTTAGTTTCACTTTATCATCTCTCTCATAATCTTTAAACTCCCTAATCAACCTAATTAATCCTTTCTTTCAATGGTCAGTTCCATT-CACTAACTA--------CTGATACCCATC-A---------CTCAAACAAATGATTATTT-
gi|7 : TTTTGGCACTAATATTTCCTTCCAGCCCAGGATGTACAAC---AT--GTGACACCTCATGACTTTAGGCTTA------TTTACTTGTACACTTTGATA-AAACTTAGGATTATTAGTATA-CAA-GCG----ATTATT---TATCTAATCTTAATAACTGTATTA------ATT-------ACA-GAAATTTCTAATATAGCAATA----TGGTACAATATTAAATATT---ATTCATAAAAATATTATAAGAATTATTACATGGTGACAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTAAGGCCTAACTCATTGTAGTGCAGCACACGATGAATAAAATTAATGCAAGTAAATTTGT-AAAA-AAAAATTATCTCTATATTATTTAAGTTTTTAAGTGtctaaatatctgtattaattacttttgacaaaaacttct
gi|9 : TATG--------------TTATATTATATT-TCT--TTGGCGAATGTTCATTTAATACTACAAAACTTGTATCGAATTT-ACATCATTTT---AATAT-----CATCTTAGTCATCAAGTTAATATCTTACAATTCACTTT-AC-----CTTCTTTAATTCTCCTTTACATTCTTACGTTTCCTATTT-TCTT-TCATTCTCCTTATTTCCTAACTATTTTAATCTTAACTTCTCAACCTACTTTCACT--TCTTAAA-C-CT-TCAATCTC---------A--------TTTA-----TCAA-------------ACT----------ACAT-------------ACATGCT-----TTCATATTTCACAATCTTTCTTCTCAAGCTCCTCCCATAATAAGTATCACTCAGTCATCTTTTTAATAATCTTTAAATT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CATAGATTTGCTGATATGCCAATAAACTTGTTGTAAACTTAATTGTTTCAATAACCAATGATGTTCACACTTACTGATTGAGTAAGGTTATCATCAGGTGACATGTCAGTGTTCACAGTTTTATTGATGGCAATAATTGTTTAAAAATCACTTATTTATGTTTGTTAAATTTTACAAAAATCTCCTAAGTTCTCCTGATATTAACTATTAATTTATAATATGACATCACATAAATGTTTGCAATACACAAATCAAACAATTGCTATACTTTTTCATTTAGACACTGCATTTATCAACGACTATTTTTTTAAGGAGCCAAGATGGCGGTTTTGCTGTGCACGCGTTGCATTATACGTTATTGTGTACACAATCGTGACGTCAGTGAAAACAAAGGATA
Unaligned ( gi|13 ): ATTATTATATCGAAAGTCTAAAAAACAAGGTCTAAAATCTTAATTGTTTCAATAACTGGTGATATTCACACCTACGGATAAAAGTTAATCATCAGGCGACATGTCGATATTCACAGTTTTTCTTGATGGTTATAATTGTTTAAAAGTCACCTTTTTCTCAAAATTTTCTTAAAATTTTTACACAAATTTCTAATTTCTACTGAAATTCACCATTATAATATCACGTAAAAGTTTGCAGTACA