lowQualScore : 1
lowQualScore : 0 0 0 6 22 1 777777777 22 33333 111 0 4 0 0 111 1 0 6
lowQualScore : . . . . .. . ......... .. ..... ... . . . . ... . . .
lowQualScore : 7 7 7 2 99 5 000000000 99 55555 222 7 6 7 7 222 4 7 9
consensus : GGGGTGAAAGCG-AAAAA-GGTCT-AAGTGCNTC-TTTATN--T-----AT-AT----G---CA-CTT-A-GA---CC-TTTTT-CGCTTTCACCCC
Reference ( gi|15 ) : GGGGTGAAAGCG-AAAAA-GGTCT-AAGTGCATC-TTTATT--T-----AT-AT----G---CA-CAT-A-GA---CC-TTTTT-CGCATTCACCCC
gi|8 : GGAGTGAAAGCG-AAAAA-GGTCT-AAGTGCTTC-TTTATT--T-----AT-AT----G---CA-CTT-A-TA---CC-TTTTT-CGCTTTCACCCC
gi|8 : gGGGGTGAAAGCG-AAAAA-GGTAT-AAGTGCATA-TAAATA--A-----AG-AA----G---CA-CTT-A-GA---CC-TTTTT-CGCTTTCACTCC
gi|19 : gGGGGTGAAAGCG-AAAAA-GGTTT-AAGTG--TC-TTTATT--T-----AT-AT----G---CA-CTT-A-GG---CC-TTTTT-CACATTCACCCC
gi|19 : GGGGTGAATGTG-AAAAA-GGCCT-AAGTGCATA---TAAA--T-----AA-AG----A---CA-CTT-A-AA---CC-TTTTT-CGCTTTCACCCC
gi|5 : GGGGTAAAAGCT-AAAAA-GGTCT-AAGTGCTTC-TTTATT--T-----AT-AT----G---TA-CTT-A-GA---CC-TTTTT-CGCATTGACCCC
gi|5 : aGGGGTCAATGCG-AAAAA-GGTCT-AAGTACATA-TAAATA--A-----AG-AA----G---CA-CTT-A-GA---CC-TTTTT-AGCTTTTACCCCt
gi|13 : aGGGGTGAATGTG-AAAAA-GGTCT-AAATGCATA-TAAATA--A-----AG-AA----G---CA-CTT-A-GA---CC-ATTTT-AGCTTTCACCCt
gi|11 : GGGGTGAGAGTG-AAAAA-GGTCT-AAGTGCTTC-TTTGTT--T-----AT-AT----G---CA-T-T-A-GA---CC-TTTTT-CGCATTCACACCt
gi|11 : aGGTGTGAATGCG-AAAAA-GGTCT-AA-TGCATA-TAAACA--A-----AG-AA----G---CA-CTT-A-GA---CC-TTTTT-CACTCTCACCCC
gi|4 : aGGGGTGAAAGCG-AAAAA-GGTAT-TTGTGCTTC-TTTATT--T-----AT-AG----G---TA-CTT-A-GA---CC-TTTTT-CGCATTCACCCC
gi|4 : aGGGGTGAATGCG-AAAAA-GGTCT-AAGTACCTA-TAAATA--A-----AG-AA----G---CA-CAA-A-TA---CC-TTTTT-CGCTTTCACCCCt
gi|2 : aGGGATGAAAGCG-AAGAG-GCTGT-AAGTGTTTC-TTTATT--T-----AT-AT----G---CA-CTT-A-GA---CC-TTTTT-CGCATTCACTCCt
gi|2 : aGGAGTGAATGCG-AAAAA-GGTCT-AAGTGCATA-TAAATA--A-----AG-AA----A---CA-CTT-A-CA---GC-CTCTT-CGCTTTCATCCCtc
gi|23 : aGGGGTGAAAGCG-AAAAA-GGTAT-AAGTGCATA-TAAATA--A-----AG-AA----G---CA-CTT-A-GA---CC-TTTTT-CGCtc
gi|22 : aaGGGGTGAAGGTG-AAAAA-GGTCT-AGATGAGTC-TTTATT--T-----AT-AT----G---CA-CTT-A-GA---CC-TTTTT-CGCTTTCACtc
gi|6 : GGGGTGAAAGCA-AAAAA-GGTCT-AAATGTTTC-TTTATA--T-----AT-AT----G---CA-CTTAA-GA---CC-ATTTT-TGCATTCACCCC
gi|6 : GGGGTGAATGCA-AAAAT-GGTCTTAAGTGCATA-TATATA--A-----AG-AA----A---CA-TTT-A-GA---CC-TTTTT-TGCTTTCACCCCt
gi|1 : GGGATGAAAGCG-AAAAA-GTTCC-AAGTGCTTC-TTT-TTCAT-----AT-AT----G---CA-CTT-A-GA---CC-TTTTT-TGCTTTCACCCCt
gi|1 : aGGGGTGAAAGCA-AAAAA-GGTCT-AAGTGCA-----TATA--TGAAAAAG-AA----G---CA-CTT-G-GA---AC-TTTTT-CGCTTTCATCCCtc
gi|14 : aGGGGTGAATGCG-AAAAA-GGTCT-AAGTGCATA-TATATA--A-----AG-AA----G----A-TCT-A-AA---CA-TTTTT-TGCTTTCACCCtc
gi|10 : tGGGGTGGAAGCG-AAAAT-GGTCT-AAGTGTTTC-TTTATT--T-----AT-AT----G---CA-CTT-T-GA---CA-TGTTT-CGCTTTCACCCt
gi|9 : GAGGTCAAAGCA-AAAAA-AACCT-AAGTGATTC-TTTAAT--T-----AC-AT----G---CA-CTT-A-GA---CC-TTTTT-CGCATTCACCCCtt
gi|9 : GGGGTGAATGCG-AAAAA-GGTCT-AAGTGCA---TGTAAT--T-----A--AA----GAATCA-CTT-A-GG---TT-TTTTT-TGCTTTGACCTCt
gi|25 : GGGGTGAAAGCA-AAAAA-GGTCT-AAGTGCAT-----AT---------AA-AT----A---AA-GA--A-GC---CC-TTTTT-CGCTTTCACCt
gi|26 : aGGGGTGAAAGCG-AAAA----------GTGCTTC-TTTATT--T-----AT-AT----G---CA-CTT-A-GA---TG-CTTTT-CGCATTCACCCCtc
gi|26 : GGGGTGAATGCG-AAAAG-CATCT-AAGTGCAT----------------AT-AA----A---TA-AAG-A-AG---CA-CTTTT-CGCTTTCACCCC
gi|7 : GGGGTGAAAGCACAAAAA-GGTCT-AAGTGCTTC-TTTATT--T-----AT-AT----G---CT-CTT-A-CA---CT-TATTT-CGCAGTAACTCC
gi|30 : GGGGTGAAAGCA-AAAAAAGGTCT-AAGTGCTTC-TTTATC--T-----AT-AT----G---CA-CTT-A-GA---CC-Tt
gi|21 : GGGGT-AGAGGG-TAAAA-GGTCT-AAGTGCATA-TAAATA--T-----AA-AA----G---GA-CTT-A-GA---CG-TTTTT-CGCTTTCACC
gi|3 : GGGGT-AAAGCG-AATAA-GGCCT-AAATGC-TT-TTTATT--T-----GT-AA----G---CA--AT-AAGA---CCGTTTTT-CGCATTCATCCC
gi|24 : GGAGTGAAAGCG-AAAAA-GTTCT-AAGTACATA-TAAATA--A-----AG-AA----G---CA-CTT-G-GG---CC-TTTctt
gi|29 : aggggtgGGGGTGAAAGCG-AAAAA--------AGTGCTTT-TTTATT--T-----AC-AT----G---CA-CTT-T-GA---AC-TTTTT-CGCAt
gi|28 : aGAGATGAAAGCT-AAAAA-GATTT-AAGTGCTTC-TTTA-T--A-----AA-AT----A---TA-CTT-A-GA---CC-TTTTT-
gi|34 : aGGGGTGAATGCG-AAAAG-CATCT-AAGTGCAT
gi|20 : cttctttatttatGGGATGAATGCG-AAAAA-GGTTT-AAGTGCATtc
gi|32 : nnnnnnnnnnnnnnnnnnnnnnnnnnnntatttatGGGGCGAAAGCG-AAAAA-G--------TGC-TCATTTCTT--T-----AT-AT----G---CA-CTT-A-GA---Ctcg
gi|35 : aGGGGTGAAAGCG-AAAAA-GGTCG-AAGTGCTTC-tgtt
gi|13 : gaGGGTGAAAGCT-AAAAT-GGTCT-AAGTGCTTC-TTTATT--T-----AT-AT----G---CA-TTT-A-GA---CC-TTTTT-CACATTCACCCC
gi|14 : GGGTGAAAGCA-AAAAA-TGTTT-AGAT-CTTC-TTTATA--T-----AT-AT----G---CA-CTT-A-GA---CC-TTTTT-CGCATTCACCCCt
gi|18 : tGGGTGAAAGCA-AAAAA-GGTCT-AAGTGCTTC-TTTATT--T-----ATAAT----G---AT-CTT-A-GG---CC-TTTTT-TGCATTCACt
gi|10 : GGGTGAAAGCG-AAACA-TGTCA-AAGTGCATA-TAAATA--A-----AG-AA----A---CA-CTT-A-GA---CC-ATTTT-CGCTTCCACCCCac
gi|16 : GGGTGAATGCG-ACAAA-AGTCT-AAGTGTATA-TAAATA--A-----AG-AA----G---AA-CTA-A-GA---CC-ATTTT-TGCTTTCACtt
gi|31 : gtGGTTGACAGCA-AAAAA-GGTCT-A---GCCTC-CT--------------------------------A-GA---AC-TTTTT-TGTATTCACCCCat
gi|12 : tGGTGAAAGCG-AAAAT-GGTCT-AAATGTTTC-TTTATT--T-----AT-AT----G---CAGTA--A-GA---CC-TTTTT-CGCATTCACCCtca
gi|25 : GGTGAAAGCG-AAAAA-GGGCT--------TC-TTTATT--T-----AT-AT----G---CA-CTT-A-GA---CC-TTTTT-TGCTTTCACCCCttc
gi|17 : aGGTGAAAGCG-AAAAA-TGTCT-AAATTCTTC-TTTATT--T-----AT-AT----G---CA-CTT-A-GA---TA-TATTG-TGCATTCACCCCtc
gi|21 : GGTGAAAGCG-AAAAA-CGTCT-AAGTCCTTT-TATATT--T-----AT-AT----G---CA-CTT-A-GA---CC-TTTTA-C-CCTCTACCCCt
gi|27 : GGTGAACGCG-AAAAA-GGGCT--------TC-TTTATT--T-----AT-TT----G---CA-CTT-A-GA---CC-TTTTT-CGCTTTCAC
gi|33 : aGGTGAAAGCG-ACAAA-GGTCT-AAGTGCTTC-TTTATT--T-----AT-AT----G---CA-
gi|22 : agtGTGAAAGCG-AAAAA-GGTCT-AAGTGCATA-TAAATA--A-----AG-AC----T---CA-TCT-A-GA---CC-TTTTT-CACCTTCACCCC
gi|18 : GTGAATGCA-AAAAA-GGCCT-AAG---ATC-ATTATA--A-----AT-AAAGAAG---CA-CTT-A-GA---CC-TTTTT-TGCTTTCACCC
gi|16 : GTGAAAGCA-AAAAT-GGTCT-TAGTTCTTC-TTTATT--T-----AT-AT----A---CA-CTT-A-GA---CT-TTTGT-CGCATTCACCCac
gi|27 : gtGTGAAAGCG-AAAAA-GGTCT-AAGTGCA------A-------------AT----A---AA-TAA-A-GAAGCCC-TTTTT-CGCGTTCACCat
gi|23 : aAAGCG-AAAAA-GGTCT-AAGTGCTTC-TTTATT--T-----AT-AT----G---CA-CTT-A-TA---CC-TTTTT-CGCTTTCACCCC
gi|7 : GCG-AAATA-AGTGT-AAGAGCATA-TAAATA--A-----AG-AA----G---CA-CTT-A-GA---CC-TTTTTGTGCTTTCACCCCtc
gi|28 : -AAAAA-GGTCT-AAGTATAT--TTTATA--A-----AG-AA----G---CA-CTT-A-AA---TC-TTTTT-AGCTTTCATCTCagtaactcct
gi|24 : aAAA-GGCCC-AAGTGCTTC-TTTATT--T-----AT-AT----G---TA-CTT-A-GA---AC-TTTTT-CGCTTTCACTCC
gi|30 : aggggtgA-GGTCT-AAGTGCATA-TAGATA--A-----AG-AA----G---CA-CTT-A-GA---CCTTTTTT-TGCTTTCACCCCt
gi|34 : TC-TTTATT--T-----AT-AT----G---CA-CTT-A-GA---TG-CTTTT-CGCATTCACCCC
gi|20 : ctTATT--T-----AT-AT----G---CA-CTT-A-AA---CC-TTTTT-CGCATTCATCCCtc
gi|33 : nnnnnnnnnnnnnnnnnnnnnnnnnnnn----G---CA-CTT-A-GA---CC-TTTGT-CGCTTTCACCtcg
gi|35 : agt----G---CA-CTT-C-GA---CC-TTTTT-CGCTTTCACCCCttctttatttatatgca
Alignments
lowQualScore : 1 1 1 22 1 1 1 8
lowQualScore : . . . .. . . . .
lowQualScore : 3 2 4 22 2 2 3 3
consensus : GGGGTGAAAGCG-AAAA-AGGTCTAAGTGCTTCTTTATT-TAT-ATGCACTT-AGACC-TTTTTCGCATTCACCCC
Reference ( family-5064 ) : GGGGTGAAAGCG-AAAA-AGGTCTAAGTGCNTCTTTATN-TAT-ATGCACTT-AGACC-TTTTTCGCTTTCACCCC
gi|1 : GGGATGAAAGCG-AAAA-AGTTCCAAGTGCTTCTTTTTCATAT-ATGCACTT-AGACC-TTTTTTGCTTTCACCCC
gi|10 : aGGGGTGGAAGCG-AAAA-TGGTCTAAGTGTTTCTTTATT-TAT-ATGCACTT-TGACA-TGTTTCGCTTTCACCCtc
gi|11 : GGGGTGAGAGTG-AAAA-AGGTCTAAGTGCTTCTTTGTT-TAT-ATGCA-TT-AGACC-TTTTTCGCATTCACACCtt
gi|12 : aGGTGAAAGCG-AAAA-TGGTCTAAATGTTTCTTTATT-TAT-ATGCAGTA-AGACC-TTTTTCGCATTCACCC
gi|13 : GGGTGAAAGCT-AAAA-TGGTCTAAGTGCTTCTTTATT-TAT-ATGCATTT-AGACC-TTTTTCACATTCACCCCttc
gi|14 : GGGTGAAAGCA-AAAA-ATGTTTAGAT-CTTCTTTATA-TAT-ATGCACTT-AGACC-TTTTTCGCATTCACCCCt
gi|15 : tGGGGTGAAAGCG-AAAA-AGGTCTAAGTGCATCTTTATT-TAT-ATGCACAT-AGACC-TTTTTCGCATTCACCCCt
gi|16 : GTGAAAGCA-AAAA-TGGTCTTAGTTCTTCTTTATT-TAT-ATACACTT-AGACT-TTTGTCGCATTCACCC
gi|17 : gtGGTGAAAGCG-AAAA-ATGTCTAAATTCTTCTTTATT-TAT-ATGCACTT-AGATA-TATTGTGCATTCACCCCat
gi|18 : GGGTGAAAGCA-AAAA-AGGTCTAAGTGCTTCTTTATT-TATAATGATCTT-AGGCC-TTTTTTGCATTCACt
gi|19 : GGGGTGAAAGCG-AAAA-AGGTTTAAGTG--TCTTTATT-TAT-ATGCACTT-AGGCC-TTTTTCACATTCACCCCac
gi|2 : GGGATGAAAGCG-AAGA-GGCTGTAAGTGTTTCTTTATT-TAT-ATGCACTT-AGACC-TTTTTCGCATTCACTCC
gi|20 : aTATT-TAT-ATGCACTT-AAACC-TTTTTCGCATTCATCCCtc
gi|21 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnGGTGAAAGCG-AAAA-ACGTCTAAGTCCTTTTATATT-TAT-ATGCACTT-AGACC-TTTTACCCTCT-ACCCCtcg
gi|22 : GGGGTGAAGGTG-AAAA-AGGTCTAGATGAGTCTTTATT-TAT-ATGCACTT-AGACC-TTTTTCGCTTTCAC
gi|23 : AAGCG-AAAA-AGGTCTAAGTGCTTCTTTATT-TAT-ATGCACTT-ATACC-TTTTTCGCTTTCACCCC
gi|24 : AA-AGGCCCAAGTGCTTCTTTATT-TAT-ATGTACTT-AGAAC-TTTTTCGCTTTCACTCCtc
gi|25 : aggggtgGGTGAAAGCG-AAAA-AGG-------GCTTCTTTATT-TAT-ATGCACTT-AGACC-TTTTTTGCTTTCACCCCt
gi|26 : aGGGGTGAAAGCG-AAAA---------GTGCTTCTTTATT-TAT-ATGCACTT-AGATG-CTTTTCGCATTCACCCCtc
gi|27 : GGTGAACGCG-AAAA-AGG-------GCTTCTTTATT-TAT-TTGCACTT-AGACC-TTTTTCGCTTTCAC
gi|28 : aGAGATGAAAGCT-AAAA-AGATTTAAGTGCTTCTTTATA--AA-ATATACTT-AGACC-TTTTT
gi|29 : aGGGGTGAAAGCG-AAAA-A------AGTGCTTTTTTATT-TAC-ATGCACTT-TGAAC-TTTTTCGC
gi|3 : aGGGGT-AAAGCG-AATA-AGGCCTAAATGCTT-TTTATT-TGT-AAGCAATA-AGACCGTTTTTCGCATTCATCCCa
gi|30 : GGGGTGAAAGCA-AAAAAAGGTCTAAGTGCTTCTTTATC-TAT-ATGCACTT-AGACC-Tctt
gi|32 : GGGGCGAAAGCG-AAAA-AG-------TGCTCATTTCTT-TAT-ATGCACTT-AGAC
gi|33 : aGGTGAAAGCG-ACAA-AGGTCTAAGTGCTTCTTTATT-TAT-ATGCAtgtt
gi|34 : agtCTTCTTTATT-TAT-ATGCACTT-AGATG-CTTTTCGCATTCACCCC
gi|35 : GGGGTGAAAGCG-AAAA-AGGTCGAAGTGCTTCtc
gi|4 : gaGGGGTGAAAGCG-AAAA-AGGTATTTGTGCTTCTTTATT-TAT-AGGTACTT-AGACC-TTTTTCGCATTCACCCC
gi|5 : aGGGGTAAAAGCT-AAAA-AGGTCTAAGTGCTTCTTTATT-TAT-ATGTACTT-AGACC-TTTTTCGCATTGACCCCt
gi|6 : aGGGGTGAAAGCA-AAAA-AGGTCTAAATGTTTCTTTATA-TAT-ATGCACTTAAGACC-ATTTTTGCATTCACCCCt
gi|7 : GGGGTGAAAGCACAAAA-AGGTCTAAGTGCTTCTTTATT-TAT-ATGCTCTT-ACACT-TATTTCGCt
gi|8 : GGAGTGAAAGCG-AAAA-AGGTCTAAGTGCTTCTTTATT-TAT-ATGCACTT-ATACC-TTTTTCGCTTTCACCCCagtaactcct
gi|9 : gGAGGTCAAAGCA-AAAA-AAACCTAAGTGATTCTTTAAT-TAC-ATGCACTT-AGACC-TTTTTCGCATTCACCCC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|31 ): TGGTTGACAGCAAAAAAGGTCTAGCCTCCTAGAACTTTTTTGTATTCACCCCTCA
Alignments
lowQualScore : 1 1 11 1 1 1
lowQualScore : . . .. . . .
lowQualScore : 2 2 66 2 2 2
consensus : GGGGTGAAAGCG-AAAA-AGGTCTAAGTGCTTCTTTATT--TAT-ATGCACTT-AGACC-TTTTTCGCATTCACCCC
Reference ( family-5064 ) : GGGGTGAAAGCG-AAAA-AGGTCTAAGTGCTTCTTTATT--TAT-ATGCACTT-AGACC-TTTTTCGCATTCACCCC
gi|1 : GGGATGAAAGCG-AAAA-AGTTCCAAGTGCTTCTTT-TTCATAT-ATGCACTT-AGACC-TTTTTTGCTTTCACCCC
gi|10 : aGGGGTGGAAGCG-AAAA-TGGTCTAAGTGTTTCTTTATT--TAT-ATGCACTT-TGACA-TGTTTCGCTTTCACCCtc
gi|11 : GGGGTGAGAGTG-AAAA-AGGTCTAAGTGCTTCTTTGTT--TAT-ATGCA-TT-AGACC-TTTTTCGCATTCACACCtt
gi|12 : aGGTGAAAGCG-AAAA-TGGTCTAAATGTTTCTTTATT--TAT-ATGCAGTA-AGACC-TTTTTCGCATTCACCC
gi|13 : GGGTGAAAGCT-AAAA-TGGTCTAAGTGCTTCTTTATT--TAT-ATGCATTT-AGACC-TTTTTCACATTCACCCCttc
gi|14 : GGGTGAAAGCA-AAAA-ATGTTTAGAT-CTTCTTTATA--TAT-ATGCACTT-AGACC-TTTTTCGCATTCACCCCt
gi|15 : tGGGGTGAAAGCG-AAAA-AGGTCTAAGTGCATCTTTATT--TAT-ATGCACAT-AGACC-TTTTTCGCATTCACCCCt
gi|16 : GTGAAAGCA-AAAA-TGGTCTTAGTTCTTCTTTATT--TAT-ATACACTT-AGACT-TTTGTCGCATTCACCC
gi|17 : gtGGTGAAAGCG-AAAA-ATGTCTAAATTCTTCTTTATT--TAT-ATGCACTT-AGATA-TATTGTGCATTCACCCCat
gi|18 : GGGTGAAAGCA-AAAA-AGGTCTAAGTGCTTCTTTATT--TATAATGATCTT-AGGCC-TTTTTTGCATTCACt
gi|19 : GGGGTGAAAGCG-AAAA-AGGTTTAAGTG--TCTTTATT--TAT-ATGCACTT-AGGCC-TTTTTCACATTCACCCCac
gi|2 : GGGATGAAAGCG-AAGA-GGCTGTAAGTGTTTCTTTATT--TAT-ATGCACTT-AGACC-TTTTTCGCATTCACTCC
gi|20 : aTATT--TAT-ATGCACTT-AAACC-TTTTTCGCATTCATCCCtc
gi|21 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnGGTGAAAGCG-AAAA-ACGTCTAAGTCCTTTTATATT--TAT-ATGCACTT-AGACC-TTTTAC-CCTCTACCCCtcg
gi|22 : GGGGTGAAGGTG-AAAA-AGGTCTAGATGAGTCTTTATT--TAT-ATGCACTT-AGACC-TTTTTCGCTTTCAC
gi|23 : AAGCG-AAAA-AGGTCTAAGTGCTTCTTTATT--TAT-ATGCACTT-ATACC-TTTTTCGCTTTCACCCC
gi|24 : AA-AGGCCCAAGTGCTTCTTTATT--TAT-ATGTACTT-AGAAC-TTTTTCGCTTTCACTCCtc
gi|25 : aggggtgGGTGAAAGCG-AAAA-AGG-------GCTTCTTTATT--TAT-ATGCACTT-AGACC-TTTTTTGCTTTCACCCCt
gi|26 : aGGGGTGAAAGCG-AAAA---------GTGCTTCTTTATT--TAT-ATGCACTT-AGATG-CTTTTCGCATTCACCCCtc
gi|27 : GGTGAACGCG-AAAA-AGG-------GCTTCTTTATT--TAT-TTGCACTT-AGACC-TTTTTCGCTTTCAC
gi|28 : aGAGATGAAAGCT-AAAA-AGATTTAAGTGCTTCTTTA-T--AAA-ATATACTT-AGACC-TTTTT
gi|29 : aGGGGTGAAAGCG-AAAA-A------AGTGCTTTTTTATT--TAC-ATGCACTT-TGAAC-TTTTTCGCA
gi|3 : aGGGGT-AAAGCG-AATA-AGGCCTAAATGCTT-TTTATT--TGT-AAGCAATA-AGACCGTTTTTCGCATTCATCCC
gi|30 : GGGGTGAAAGCA-AAAAAAGGTCTAAGTGCTTCTTTATC--TAT-ATGCACTT-AGACC-ctt
gi|31 : GGTTGACAGCA-AAAA-AGGTCTA---GCCTCCT-------------------AGAAC-TTTTTTGTATTCACCCC
gi|32 : tGGGGCGAAAGCG-AAAA-AG-------TGCTCATTTCTT--TAT-ATGCACTT-AGACtca
gi|33 : aGGTGAAAGCG-ACAA-AGGTCTAAGTGCTTCTTTATT--TAT-ATGCAtgtt
gi|34 : agtCTTCTTTATT--TAT-ATGCACTT-AGATG-CTTTTCGCATTCACCCC
gi|35 : GGGGTGAAAGCG-AAAA-AGGTCGAAGTGCTTCtc
gi|4 : gaGGGGTGAAAGCG-AAAA-AGGTATTTGTGCTTCTTTATT--TAT-AGGTACTT-AGACC-TTTTTCGCATTCACCCC
gi|5 : aGGGGTAAAAGCT-AAAA-AGGTCTAAGTGCTTCTTTATT--TAT-ATGTACTT-AGACC-TTTTTCGCATTGACCCCt
gi|6 : aGGGGTGAAAGCA-AAAA-AGGTCTAAATGTTTCTTTATA--TAT-ATGCACTTAAGACC-ATTTTTGCATTCACCCCt
gi|7 : GGGGTGAAAGCACAAAA-AGGTCTAAGTGCTTCTTTATT--TAT-ATGCTCTT-ACACT-TATTTCGCAGTAACTCCt
gi|8 : GGAGTGAAAGCG-AAAA-AGGTCTAAGTGCTTCTTTATT--TAT-ATGCACTT-ATACC-TTTTTCGCTTTCACCCCt
gi|9 : gGAGGTCAAAGCA-AAAA-AAACCTAAGTGATTCTTTAAT--TAC-ATGCACTT-AGACC-TTTTTCGCATTCACCCC
Alignments
lowQualScore : 1 1 11 1 1 1
lowQualScore : . . .. . . .
lowQualScore : 2 2 66 2 2 2
consensus : GGGGTGAAAGCG-AAAA-AGGTCTAAGTGCTTCTTTATT--TAT-ATGCACTT-AGACC-TTTTTCGCATTCACCCC
Reference ( family-5064 ) : GGGGTGAAAGCG-AAAA-AGGTCTAAGTGCTTCTTTATT--TAT-ATGCACTT-AGACC-TTTTTCGCATTCACCCC
gi|1 : GGGATGAAAGCG-AAAA-AGTTCCAAGTGCTTCTTT-TTCATAT-ATGCACTT-AGACC-TTTTTTGCTTTCACCCC
gi|10 : aGGGGTGGAAGCG-AAAA-TGGTCTAAGTGTTTCTTTATT--TAT-ATGCACTT-TGACA-TGTTTCGCTTTCACCCtc
gi|11 : GGGGTGAGAGTG-AAAA-AGGTCTAAGTGCTTCTTTGTT--TAT-ATGCA-TT-AGACC-TTTTTCGCATTCACACCtt
gi|12 : aGGTGAAAGCG-AAAA-TGGTCTAAATGTTTCTTTATT--TAT-ATGCAGTA-AGACC-TTTTTCGCATTCACCC
gi|13 : GGGTGAAAGCT-AAAA-TGGTCTAAGTGCTTCTTTATT--TAT-ATGCATTT-AGACC-TTTTTCACATTCACCCCttc
gi|14 : GGGTGAAAGCA-AAAA-ATGTTTAGAT-CTTCTTTATA--TAT-ATGCACTT-AGACC-TTTTTCGCATTCACCCCt
gi|15 : tGGGGTGAAAGCG-AAAA-AGGTCTAAGTGCATCTTTATT--TAT-ATGCACAT-AGACC-TTTTTCGCATTCACCCCt
gi|16 : GTGAAAGCA-AAAA-TGGTCTTAGTTCTTCTTTATT--TAT-ATACACTT-AGACT-TTTGTCGCATTCACCC
gi|17 : gtGGTGAAAGCG-AAAA-ATGTCTAAATTCTTCTTTATT--TAT-ATGCACTT-AGATA-TATTGTGCATTCACCCCat
gi|18 : GGGTGAAAGCA-AAAA-AGGTCTAAGTGCTTCTTTATT--TATAATGATCTT-AGGCC-TTTTTTGCATTCACt
gi|19 : GGGGTGAAAGCG-AAAA-AGGTTTAAGTG--TCTTTATT--TAT-ATGCACTT-AGGCC-TTTTTCACATTCACCCCac
gi|2 : GGGATGAAAGCG-AAGA-GGCTGTAAGTGTTTCTTTATT--TAT-ATGCACTT-AGACC-TTTTTCGCATTCACTCC
gi|20 : aTATT--TAT-ATGCACTT-AAACC-TTTTTCGCATTCATCCCtc
gi|21 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnGGTGAAAGCG-AAAA-ACGTCTAAGTCCTTTTATATT--TAT-ATGCACTT-AGACC-TTTTAC-CCTCTACCCCtcg
gi|22 : GGGGTGAAGGTG-AAAA-AGGTCTAGATGAGTCTTTATT--TAT-ATGCACTT-AGACC-TTTTTCGCTTTCAC
gi|23 : AAGCG-AAAA-AGGTCTAAGTGCTTCTTTATT--TAT-ATGCACTT-ATACC-TTTTTCGCTTTCACCCC
gi|24 : AA-AGGCCCAAGTGCTTCTTTATT--TAT-ATGTACTT-AGAAC-TTTTTCGCTTTCACTCCtc
gi|25 : aggggtgGGTGAAAGCG-AAAA-AGG-------GCTTCTTTATT--TAT-ATGCACTT-AGACC-TTTTTTGCTTTCACCCCt
gi|26 : aGGGGTGAAAGCG-AAAA---------GTGCTTCTTTATT--TAT-ATGCACTT-AGATG-CTTTTCGCATTCACCCCtc
gi|27 : GGTGAACGCG-AAAA-AGG-------GCTTCTTTATT--TAT-TTGCACTT-AGACC-TTTTTCGCTTTCAC
gi|28 : aGAGATGAAAGCT-AAAA-AGATTTAAGTGCTTCTTTA-T--AAA-ATATACTT-AGACC-TTTTT
gi|29 : aGGGGTGAAAGCG-AAAA-A------AGTGCTTTTTTATT--TAC-ATGCACTT-TGAAC-TTTTTCGCA
gi|3 : aGGGGT-AAAGCG-AATA-AGGCCTAAATGCTT-TTTATT--TGT-AAGCAATA-AGACCGTTTTTCGCATTCATCCC
gi|30 : GGGGTGAAAGCA-AAAAAAGGTCTAAGTGCTTCTTTATC--TAT-ATGCACTT-AGACC-ctt
gi|31 : GGTTGACAGCA-AAAA-AGGTCTA---GCCTCCT-------------------AGAAC-TTTTTTGTATTCACCCC
gi|32 : tGGGGCGAAAGCG-AAAA-AG-------TGCTCATTTCTT--TAT-ATGCACTT-AGACtca
gi|33 : aGGTGAAAGCG-ACAA-AGGTCTAAGTGCTTCTTTATT--TAT-ATGCAtgtt
gi|34 : agtCTTCTTTATT--TAT-ATGCACTT-AGATG-CTTTTCGCATTCACCCC
gi|35 : GGGGTGAAAGCG-AAAA-AGGTCGAAGTGCTTCtc
gi|4 : gaGGGGTGAAAGCG-AAAA-AGGTATTTGTGCTTCTTTATT--TAT-AGGTACTT-AGACC-TTTTTCGCATTCACCCC
gi|5 : aGGGGTAAAAGCT-AAAA-AGGTCTAAGTGCTTCTTTATT--TAT-ATGTACTT-AGACC-TTTTTCGCATTGACCCCt
gi|6 : aGGGGTGAAAGCA-AAAA-AGGTCTAAATGTTTCTTTATA--TAT-ATGCACTTAAGACC-ATTTTTGCATTCACCCCt
gi|7 : GGGGTGAAAGCACAAAA-AGGTCTAAGTGCTTCTTTATT--TAT-ATGCTCTT-ACACT-TATTTCGCAGTAACTCCt
gi|8 : GGAGTGAAAGCG-AAAA-AGGTCTAAGTGCTTCTTTATT--TAT-ATGCACTT-ATACC-TTTTTCGCTTTCACCCCt
gi|9 : gGAGGTCAAAGCA-AAAA-AAACCTAAGTGATTCTTTAAT--TAC-ATGCACTT-AGACC-TTTTTCGCATTCACCCC
blockSeqs : C A . A A G
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . .
blockSeqs : . .
blockSeqCons : **
originalCons : GGGGTGAAAGCG-AAAA-AGGTCTAAGTGCTTCTTTATT--TAT-ATGCACTT-AGACC-TTTTTCGCATTCACCCC
finalCons : GGGGTGAAAGCG-AAAA-AGGTCTAAGTGCTTCTTTATT--TAT-ATGCACTT-AGACC-TTTTTCGCATTCACCCC
Alignments
lowQualScore : 1 1 11 1 1 1
lowQualScore : . . .. . . .
lowQualScore : 2 2 66 2 2 2
consensus : GGGGTGAAAGCG-AAAA-AGGTCTAAGTGCTTCTTTATT--TAT-ATGCACTT-AGACC-TTTTTCGCATTCACCCC
Reference ( family-5064 ) : GGGGTGAAAGCG-AAAA-AGGTCTAAGTGCTTCTTTATT--TAT-ATGCACTT-AGACC-TTTTTCGCATTCACCCC
gi|1 : GGGATGAAAGCG-AAAA-AGTTCCAAGTGCTTCTTT-TTCATAT-ATGCACTT-AGACC-TTTTTTGCTTTCACCCC
gi|10 : aGGGGTGGAAGCG-AAAA-TGGTCTAAGTGTTTCTTTATT--TAT-ATGCACTT-TGACA-TGTTTCGCTTTCACCCtc
gi|11 : GGGGTGAGAGTG-AAAA-AGGTCTAAGTGCTTCTTTGTT--TAT-ATGCA-TT-AGACC-TTTTTCGCATTCACACCtt
gi|12 : aGGTGAAAGCG-AAAA-TGGTCTAAATGTTTCTTTATT--TAT-ATGCAGTA-AGACC-TTTTTCGCATTCACCC
gi|13 : GGGTGAAAGCT-AAAA-TGGTCTAAGTGCTTCTTTATT--TAT-ATGCATTT-AGACC-TTTTTCACATTCACCCCttc
gi|14 : GGGTGAAAGCA-AAAA-ATGTTTAGAT-CTTCTTTATA--TAT-ATGCACTT-AGACC-TTTTTCGCATTCACCCCt
gi|15 : tGGGGTGAAAGCG-AAAA-AGGTCTAAGTGCATCTTTATT--TAT-ATGCACAT-AGACC-TTTTTCGCATTCACCCCt
gi|16 : GTGAAAGCA-AAAA-TGGTCTTAGTTCTTCTTTATT--TAT-ATACACTT-AGACT-TTTGTCGCATTCACCC
gi|17 : gtGGTGAAAGCG-AAAA-ATGTCTAAATTCTTCTTTATT--TAT-ATGCACTT-AGATA-TATTGTGCATTCACCCCat
gi|18 : GGGTGAAAGCA-AAAA-AGGTCTAAGTGCTTCTTTATT--TATAATGATCTT-AGGCC-TTTTTTGCATTCACt
gi|19 : GGGGTGAAAGCG-AAAA-AGGTTTAAGTG--TCTTTATT--TAT-ATGCACTT-AGGCC-TTTTTCACATTCACCCCac
gi|2 : GGGATGAAAGCG-AAGA-GGCTGTAAGTGTTTCTTTATT--TAT-ATGCACTT-AGACC-TTTTTCGCATTCACTCC
gi|20 : aTATT--TAT-ATGCACTT-AAACC-TTTTTCGCATTCATCCCtc
gi|21 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnGGTGAAAGCG-AAAA-ACGTCTAAGTCCTTTTATATT--TAT-ATGCACTT-AGACC-TTTTAC-CCTCTACCCCtcg
gi|22 : GGGGTGAAGGTG-AAAA-AGGTCTAGATGAGTCTTTATT--TAT-ATGCACTT-AGACC-TTTTTCGCTTTCAC
gi|23 : AAGCG-AAAA-AGGTCTAAGTGCTTCTTTATT--TAT-ATGCACTT-ATACC-TTTTTCGCTTTCACCCC
gi|24 : AA-AGGCCCAAGTGCTTCTTTATT--TAT-ATGTACTT-AGAAC-TTTTTCGCTTTCACTCCtc
gi|25 : aggggtgGGTGAAAGCG-AAAA-AGG-------GCTTCTTTATT--TAT-ATGCACTT-AGACC-TTTTTTGCTTTCACCCCt
gi|26 : aGGGGTGAAAGCG-AAAA---------GTGCTTCTTTATT--TAT-ATGCACTT-AGATG-CTTTTCGCATTCACCCCtc
gi|27 : GGTGAACGCG-AAAA-AGG-------GCTTCTTTATT--TAT-TTGCACTT-AGACC-TTTTTCGCTTTCAC
gi|28 : aGAGATGAAAGCT-AAAA-AGATTTAAGTGCTTCTTTA-T--AAA-ATATACTT-AGACC-TTTTT
gi|29 : aGGGGTGAAAGCG-AAAA-A------AGTGCTTTTTTATT--TAC-ATGCACTT-TGAAC-TTTTTCGCA
gi|3 : aGGGGT-AAAGCG-AATA-AGGCCTAAATGCTT-TTTATT--TGT-AAGCAATA-AGACCGTTTTTCGCATTCATCCC
gi|30 : GGGGTGAAAGCA-AAAAAAGGTCTAAGTGCTTCTTTATC--TAT-ATGCACTT-AGACC-ctt
gi|31 : GGTTGACAGCA-AAAA-AGGTCTA---GCCTCCT-------------------AGAAC-TTTTTTGTATTCACCCC
gi|32 : tGGGGCGAAAGCG-AAAA-AG-------TGCTCATTTCTT--TAT-ATGCACTT-AGACtca
gi|33 : aGGTGAAAGCG-ACAA-AGGTCTAAGTGCTTCTTTATT--TAT-ATGCAtgtt
gi|34 : agtCTTCTTTATT--TAT-ATGCACTT-AGATG-CTTTTCGCATTCACCCC
gi|35 : GGGGTGAAAGCG-AAAA-AGGTCGAAGTGCTTCtc
gi|4 : gaGGGGTGAAAGCG-AAAA-AGGTATTTGTGCTTCTTTATT--TAT-AGGTACTT-AGACC-TTTTTCGCATTCACCCC
gi|5 : aGGGGTAAAAGCT-AAAA-AGGTCTAAGTGCTTCTTTATT--TAT-ATGTACTT-AGACC-TTTTTCGCATTGACCCCt
gi|6 : aGGGGTGAAAGCA-AAAA-AGGTCTAAATGTTTCTTTATA--TAT-ATGCACTTAAGACC-ATTTTTGCATTCACCCCt
gi|7 : GGGGTGAAAGCACAAAA-AGGTCTAAGTGCTTCTTTATT--TAT-ATGCTCTT-ACACT-TATTTCGCAGTAACTCCt
gi|8 : GGAGTGAAAGCG-AAAA-AGGTCTAAGTGCTTCTTTATT--TAT-ATGCACTT-ATACC-TTTTTCGCTTTCACCCCt
gi|9 : gGAGGTCAAAGCA-AAAA-AAACCTAAGTGATTCTTTAAT--TAC-ATGCACTT-AGACC-TTTTTCGCATTCACCCC