lowQualScore : 1 1 1 3333333 111 111111111111
lowQualScore : 1 9999999 1 1 6 4 1 3 77 3 2 6 1 7 1 88 5 7 4 1 3 3333333 1 000 3 1 555555555555 1 44444 222 44 7 1 0 33 8 4 5 5
lowQualScore : . ....... . . . . . . .. . . . . . . .. . . . . . ....... . ... . . ............ . ..... ... .. . . . .. . . . .
lowQualScore : 4 3333333 7 8 1 2 7 5 22 5 4 4 7 4 7 55 7 0 7 7 1 6666666 7 000 3 7 444444444444 6 00000 888 44 0 7 8 88 0 6 0 0
consensus : CGTAGAAATT-------TATGAAAATCACTGTATGAAATGTGAAAC-CCAAAATAGCATCATGACT-T-TT--T-CTGTTTTAGATACTTTATCTTTTGTTACATGGGTGACAACAATA-TTTTGTTGAAATATATCACTTTNTT-AG-TAAATNAAACANGATTTATAACTTACACC-CNTTTGCTGTTTTTTCTTT-T----AAAAAATGTAAA-ACGGTGTAGTTT-AAAAAT-A-GTCGTAGC------------AAAA-A-----A---AC--AAGCATGGTGACCTATATTTTTTTCTAG-TGTTTTAAACTTGTCTTACTTCAAAGTACTTGTGTGCAAAA--TTT-AAAAAAAATCTCCGCGCTAGAAGTNACTCGAAGAAACGTC
Reference ( gi|3 ) : CGTAGAAATT-------TATGAAAATCACTGTATGAAATGTGAAAC-TCACAATAGCATCATGACT-T-TT--T-CTGTTTGAGATACTTTATCTTTTGTTACATGAGTGACAACAACA-TTTTGTTGAAATATATCACTTTGTT-AA-TAAATTAAACAAGATTTATATCTTACACC-CATTTGCTGTTTTTTCTTC-C----AAAAAATGTAAA-ACGGTGTAGTTT-AGAAAT-A-GTCATAGC------------AAAA-A-----A---AC--AAGCATGGTGACCTATATTTTTTTTTAG-TGTTTTAAACTTGTCTTACTTCAAAGTACTTGTGTGCAAAA--TTT-AAAAAAAATCTCCGTGCTAGAACTTACTCGAAGAAACGTC
gi|2 : CGTAGAAATT-------TATGAAAATTACTGTATAAAATGTGAAAC-TCAAAAGAGCATCATGACT-T-TT--T-CTGTTTTAGATACTTTATCTTTTGTTACATGAGTGACAACAATA-TTTTGTTGAAATATATCACTTTGTT-AG-TAAATTAAACAAGATTTATAACTTACACC-AATTTGCTGTTTTTTTCTT-T----AAAAAATGTAAA-ACTGTGTAGTTT-AAAAAT-A-GTCATAGC------------AAAA-A-----A---AC--AAGCATGGGGACCTATATTTTTTTTTAG-TGTTTTAAACTTGTCTTACTTCAAAGTACTTGTGTGCAAAA--TTT-AAAAAAAATCTCCGCGCTACAACTTACTCGAAGAAACGTC
gi|7 : CGTAGAAATG-------TATGAAAATTACTGTATGAAATGTGAAAC-TCAAAATAGCATCATGACT-T-TT--T-CTGTTTTAGATACTTTATCTTTTGTTACATGAGTGACAACAATA-TTTTGTTGCAATATATCACTTTGTT-AG-TAAATTAAACAAGATTTATAACTTACACC-CATTTTCTGTTTTTTCTTT-A----AAATAA-GTAAA-ACGGTGTAGTTT-AAAAAT-A-GTCATAGC------------AAAA-A-----A---AC--AAGCATGGGGACCTATATTATTTTTTAG-TGTTTTAAACTTGTCTTACTTCAAAGTACTTGTGTGCAAAA--TTT-AAAAAAAATCTCTGCGCTAGAACTTACTCGAAGAAACG
gi|4 : CGTAGAAATT-------TATGAAAATTACCGTATGAAATGTGAAAC-TCAAAAGAGCATCATGACT-T-TT--T-CTGTTTTAGATGCTTTATCTTTTGTTACATGAGTGACAACAATA-CTTTGTTGAAATATATCACTTTGTT-AA-TAAATTAAACAAGATTTATAACTTACACC-AATTTGCTGTTTTTTCTT--T----AAAAAATGTTAA-ACGGTGTAGTTT-AAAAAT-A-GTCATAGC------------AAAA-A-----A---AC--AAGCATGGGGACCTATATTATTTTTTAG-TGTTTTAAACTTGTCTTACTTCAAAGTACATGTGTGCAAAA--TTT--AAAAAAATCTTCGGGCTAGAACTTACTCGAAGAAACGTC
gi|5 : atCGTAGAAATT-------TATGAAAATTACTGTATGAAATGTGAAAC-TCAAAAGAGCATCATGACA-T-TT--T-CTGTTTTAGATACTTTATCTTTTGTTACATGAGTGACAACAATA-TTCTGTTGAAATATATCACTTTGTT-AG-TAAATTAAACACGATTTATAACTTACACC-AATTTGCTGTTTTTTCTT--T----AAAAAATGTAAA-ACAGTGTAGTTT-AAAAAT-A-GTCATAGC------------CAAA-A-----A---AC--AAGCATGGGGACCTATA--TATTTTTAG-TGTTTTAAACTTGTCGTACTTCAAAGTACTTGTGTGCAAAA--TTT-AAAAAAAATCTCCGCGCTAGAACTTACTCGGAGAAACGT
gi|14 : atCGTAGAAATTCATGATGTATGAAAATCAGTGTATGAAATGTGAAAC-TCAAAATAGCATCATGACT-T-TT--T-CTGTTTTAGATACTTTATCTTTTGTTACATGATTGACAACAATA-TTTTGTTGAAATATATCACTTTGTT-AG-TAAATTAATCAAGATTTATAACTTACACC-CATTTGCTGTTTTTTCTT--T----AAAAAATGTAAA-ACGGTGTAATTT-AAAAAT-A-GTTATATC------------------------------------------------TTTT--TTTAG-TGTTTTAAACTAGTCTTACTTCAAAGTACTTTTGTGCAAAA--TTT-AAAAAAAATCTCCGCGCTAGAACTTACTCGAAGAAA
gi|9 : CGTAATAATT-------TATGAAAATCACTGTATGAAATGTGAAAC-TCAAACTTACATCAT-ATT-T-TTTTT-CTGTTTAAGATACTTTATCTTTTGTTACATGGATGACAACAATA-TTTTGTTGAAATATATCACTTTGTT-AG-TAAATAAAACATAATTTAAAACTTACACA-CCTTTGCTGTTTTTTCTT--T----AAAAAATGTAAA-AAGGTGTAGTTT-AAAAAA-A-GTCATAGC------------AAAA-A-----AAACAC--AAACATGGTGACCTATATTTTTTTCGAG-TGTTTTAAACTTGTCTTACTTTAAAGTACTTGTGTGCAAAT--TTT-AAAAAAAATCACCGCGCTAGAATTAACTCG
gi|1 : CGTAGCAATT-------TATGAAAATT-TTGTATGAATAATCAAAC-CCAAAATAGCATCATGATT-T-TTTTT-CTGTTTTAGATACTTTATCCTTTGTTACATGGGTGACAACAATA-TTTTGTTGAAATATATCACTTTTTC-AG-TAAA-TAAACATGATTTATAACTTGCATC-TCTTTGCTGTCTTTTCTTT-A----AAAAAATATAAA-ACAGTGTAGTTA-AAAATT-A-GTCGTAGCAAAAATAACATAAAAA-A-----A---AC--AAGCATGATAACCTATTTTTTTTTCAAG-TGTTTTAAACTTGTCTTACTTCAAAGTACTTGTGCGC--------------AAAATCTCCGCGCTAGAAGTAACTTAAAGAAATGTCt
gi|24 : tCGTAGAAATT-------TATGAAAATTACTGTATGAAATGTGAAAC-TCAAAAGAGCATCATGACT-T-TT--T-CTATTTTAGATACTTTATCTTTTGTGACAGGAGTGACAACAATA-TTTTGTTGAAATATATCACTTTGTT-AG-TAAATTAAACAAGATTTATAAATTACACC-AATTTGCTGTTTTTTCTT--T----AAATAATGTCAA-ACGGTGTAGTTT-AAAAAT-A-GTCATAGC------------AAAA-A-----A---AC--AAGCATGGGGACC
gi|11 : atCGTAGCAATT-------TATGAAAATCATTGTATAAAAGTTGAAAC-CCAAAATAGCATCAT-ATT-T-TTTTT-CTGTTTTAGATACTTTATCTTCTGTTACATGAATGACAACAATATTTTTGTTGAAATATATCACTTTTTT-AG-GAAATAAAACGTGATTCATAACTTGCATC-CCTCTGCAG-TATTTCTTT-A----AAAAAATGTAAA-AAGGTATTGTTT-A-AAATAA-GTCATAGC------------AAAA-AAAAACA---AC--AAGCATGGCGACCTATAC-------------------ACTTGTCTTACTTCAAAGTACTTGTGTGCAAAA--TTT-AAAAAAAAT---CGCGCTAGAAGTTTCTCAAAGAAATGTC
gi|19 : tCGTAGCAATT-------TATGAAAATCACTTTATGAAA--------------A-AGCATCAT-ATT-TGTT--T-ATGTTTTAGATATTGTATCTTTTGTTACATGGATGATAACAATA-TTTTGTTCATATATATCCCTTCCTT-AG-TAAATAAAATA----TTATATCTTACACCTCA-TTGCAGTTTTTTCTTT-A----AGAAAAT-TAGATACGGTGTAGTTA-AAAAAT-A-GTCGTAGC------------AAAATA-----A---AC--AAGCATGGTGACCAATA---TGTTTTAGTTCTTTTAAACTTGT----------------------CAAAA--TTT--TAGAAATTCCTCGTGCTAGAAGTAACTCGAAGAAA
gi|26 : CGTAGAAATT-------TATGAAAATTACTGTATGAAATGTAAAAC-TCAAAAGAGCATCATCACT-T-TT--T-CTGTTTTAGATACTTTATCTTTTGTTACATGAGTGACAACAATA-TTTT-T---AATATATttc
gi|8 : atGTAAACATT-------TATGAAAATCACTGTATGAAATGTGAAAC-TCAAAATAGCATCATGACT-T-TT--T-CTGTTTTAGATACTGTATCTTTTGTAACATGAGTGACAACAATA-TTTTGTTGAAATATATCACTTTGTT-AG-TAAATTAAACAAGATTTATAACTTACACC-CATTTGCTGTTTTTTTTTT-T----AAAAAATGTAAA-ACGGTGTAGTTT-TAAAAT-A-GTCATAGC------------AAAA-A-----A---AC--AAGCATGGTGACCTATA-GTTTTTTTAG-TGTTTTGAACTGGTCGTACTTTAAAGTACTTGTGTGCAAAA--TTT-AAAAAAAATCTCTGCGCTAGAACTTACTCCAAGAAACGT
gi|10 : GTAGCAATC-------CATAAAAA-CACTGAATGAAAGGTGAAAC-CCTAAATAGCTTCATGATTAT-TT--T-CTGTTTCTGATACTTTATCTTTTGTTACATGGATGACAACAATA-TTTTGTTGAAATATATGACTTCTTT-AG-TAAATAAAGCATGATTCATA------ACT-CATTTACTGTCTTTTCTT--T----AAAAAATGAAAA-ACTGTGTAGCTTAAAAAAC-A-GTCGTAGCAAAA--------AAAA-A-----A---AC--AAGCATGTTGATCTATATTTTAGTCTAG-TGTTTTAAACTCG---------AAAA-ACTTGTGGGTAAAA--TTA-AAAAAAAATCTCTTCGCGAGAAGTAACATGAAGAAATGT
gi|6 : tTAGCAATT-------TATGAAAATCATTGTATGAAAGGTGAAAC-CCAAAACAGCATCATGATT-TGTT--T-CTGTTTTAGATACTTTATCTTTTGTTTCATGGATGACAACAATA-TTTTGTTGAAATATATCACTCTTTT-AG-TAAATAAAACAAGATTTATAACTTGCACT-CCTTTGCTGTCTTTTCTTTAT----AAAAAA-ATAAA-ATGGTGTTGTTT-AAAATT-A-GTCGTAGC-------------AAA-A-----A---AC--AAGCATGGTTACCTATATTGTTTTTTAG-TGTTTTAAACTTGTCTTACTTCAAAGTAA--GTGTGCAAAA--TTTAAAAAAAAATCTCTGCGCTAGAAGTAACTCGAAGAAATATC
gi|13 : aATTGTATGAAAGGTGAAAC-CCAAAATAGCATCATGA-T-T-TT--T-CTGCTTTAGATACTTTATCTTTTGTGACATGGATGACAACAATA-TTTTGTTAAAATATATCACTCTTTT-AG-TAAATAAAACATAATTTATAACTTTCACA-CCTTTGCTGTCTTTTCTTT-A----AAAAAATGTAAA-ACGGTGTAGTTT-A-AAAT-AGGTCGTACCA-----------AAAA-A-----A---AC--AAGCATGGTGACCTG-AATTTTTTCAAG-TGTTTTAAACTTGTCTTACTTCAAAGTCCTTGTGTGCAAAA--TTTAAAAAAAAATCTCCGCGCTAGAAGTAACTCGAAGAAA
gi|12 : GCATGAATTGTGAAAC-TCAAAATAGCATCATGACT-T-TT--T-CTGTTTTAGATACTTTAGCTTTTGTTACATGAGTGACAACAATA-TTTTGTTGAAATATATCACTTTGTT-AG-TAAATCAAACAAGATTTATAACTTACACC-CATTTGCTGTTTTTTTTTC-TTTAAAAAAAAAGTAAA-ACGGCGTAGTTT-AAAAAT-A-GTCATAGC------------AAAA-A-----C---AC--AAGCATGGTGACCTATA-TTTGTTTTAG-TGTTTTAAACTTGTCTTACTTCAAAGTACTTGTGTGCAAAA--TTT-AAAAAAAATCTCCGCGCTAGAACTTACTCGAAGAAACGT
gi|17 : TGAAAC-CTAAAATAGCATCATGA-T-T-TT--T-CTGTTTGAGATACTTTATCTTTTGTTACATGGATGACAACAATA-TTTTGTTGAAATATATCACTTC-TT-AAGTAAATAAAACATGATTTATATCTTACATA-CCTTTTCTTTTTTTTTCTT-T----AAAAAATG-AAA-ACTGTGTAGCTTAAAAAAT-A-GTCG-AAT------------AAAA-A-----A---ATAAAAGCATGGTGAACTATA--TTTTTCTAG-TGTTTTCAACTTGTCTTACTTCAAAGTACGTGTGTGC--AC--TTT-TTAAACAATCTCCGCACTAGAAGTAACTCTAAGAAATGTC
gi|18 : TGAAAC-CTAAAATAGCATCATGA-T-T-TT--T-CTGTTTGAGATACTTTATCTTTTGTTACATGGATGACAACAATA-TTTTGTTGAAATATATCACTTC-TT-AAGTAAATAAAACATGATTTATATCTTACATA-CCTTTTCTTTTTTTTTCTT-T----AAAAAATG-AAA-ACTGTGTAGCTTAAAAAAT-A-GTCG-AAT------------AAAA-A-----A---ATAAAAGCATGGTGAACTATA--TTTTTCTAG-TGTTTTCAACTTGTCTTACTTCAAAGTACGTGTGTGC--AC--TTT-TTAAACAATCTCCGCACTAGAAGTAACTCTAAGAAATGT
gi|29 : GAAACCTCA-AATAGCATCATGATT-T-TT--T-CTGTTTTAGATA
gi|20 : aaAAAC-CCAAAATAACATCATGATT-T-TT--T-CTGTTTTAGATACTTTATCTTTTGTTACATGGATAACAACAATA-TTTTGTTGAAATATATCACTCTTAT-AG-TCAATAAAACATGATTTATAACTTGCACC-CCTTTGATGTCTTTTCTTT-TA---AAAAAATGTAAA-ACGGTGTAGTTT-AAGATT-A-GTTGTAGC------------AAAA-C-----A---AC--AAGCATGGTGA-TTATA-TCTTTTCTAG-TTTTTTAAATTTGTCTTAATTCAAAGCATTTGTGTGCAAAA--T---------AATCT---TGTTAGAAGTAACTCGAAGA
gi|15 : AAC-CCCAAATAGCATCATAATT-T-TT--T-CTGTTTTAGATACTTTATCTTTTGTTACATGGATTACAACAATA-TTTGGTTGAAATATATCACTTTTTTTAG-TAAATAAAACATGATTTATAACTTGCACC-CCTTTGCTGTCTTTTCTTT-A----AAAAAATGTAAA-ACGGTGTAGTTT-AAAATT-A-GTCGTAGC------------AAAA-A-----A---AC--AAGCATGGTCACTTATATTTTTTTCTAG-TGTTTTAAACTTGTCTTACTTCAAAGTACTTGTGTGCAAAA--TTTAAAAAAAAATCTCCGCGCTAGAAGTAACTCGAAGAAACGTCcatg
gi|16 : AAC-ACAAAATAGCATCATGATT-T-TT--TTCTAATTTAGATACTTTATCATTTGTTTCATGAATGACAAAAATA-TTTTGTTGAAATATTTCACTCTTTT-AG-TAAATAAAACATGATTTATAACTTGCACC-CCTTTGCTGTATTTTCTTT------AAAAAATGTAAA-ACGGTGTAGTTT-AAAATT-A-GTCGTAGCG-----------AAAA-A-----A---AC--AAACAAGGTGACCTATATTTTTTGCTAG-TGTTTTAAACTTATCTTACTTCAAAGTACTTGTGTGCAAAA--TTT-AAAAAAAATCTCCGCGCTAGAAGTAACTCGAAGTAATGTC
gi|21 : CATCATGATT-T-TT--TTCTGTTTCAGATACTTTATC--------------------------TTTCGTTGAAATACATCACTTT--T-AAGTAAATAAAACATGTTTTATAACTTGCACC-CTTTTGCTGTCTTTTCTTT-T----AAAAAATGTAAA-ACGGTGTATTTT--TAAATAA-ATCGTAGA------------AAAA-A-----A---AC--AAGCATGGTGACCTATATTTTTTTCTAG-TGTTTTAAACTTGTCTTACTTCAAAGTGCTTGAGTGAAAAA--TTTAAAAAAAAATCTCCGCGCCAGAAGTTTCTCGAAGAAATGTC
gi|22 : AGTGACAACAATA-TTTTGTTGAAATATATCACTATGTT-AG-TAAATTAAACAAGATTTATAACTTACACC-CATTTGCTGTTTTTTCTT--T----AAAAAATGTAAA-ACCGCATAGTTTAAAAAAT-A-GTCATAGC------------AAAA-A-----A---AC--AAGCATGGGGACCTATATTTTTTTTTAG-TGTTTTAAACTTGTCTTATTTCAAAGTACTTGTGTGCAAAA--TTT-AAAAAAAATCTCCGCGCTAGAACTTATTCGAAGAAACGTC
gi|23 : GACAATAATA-TTTTGTTGAAATATAGCACTCTTTT-AG-TACATAAAACATGATTTATAACTTTCACC-CCTTTGCTGTCTTTTCTTT-A----AAAAAATGTTAA-ACGGTGTAGTTT-AAAATT-A-GTCGTAGC------------AAAA-A-----A---AC--AAGCATGGTGACCTATATTTTATCTT-G-TGTTTTAAACTTGTCTTACTTCAAAGTCCTTGTGTGCAAAAT-TTT-AAAAAAATTCTCAGCGCTAAAAGTAACTCTAGGAAATGT
gi|25 : TT-GG-TAAATTAAACAAGATTTATAACTTACACC-CATTTGCTGTTTTTTCTTT------AAAAAATGTAAA-ACGGTGTAGTTT-AAAAAT-A-GTCATAGC------------AAAA-A-----A---AC--AAGCAAGGCGACCTATATTTTTTTTTAG-TGTTTTAAACTTGTCTTACTTCAAAGTGCTTGTGTGCAAAA--TTT-AAGAAAAATCTCCGTGCCAGAACTTACTCAAAGAAACGTC
gi|27 : tgt-A-----A---AC--AAGCATGGTGATCTATATTTTTTCT-AG-TGTTTTAAACTTGTCTTACGTCAAAGTAA--ATGTGCAAAA--TTTAAAAAAAAATCTCCGCGCTAGAAGTAACTCGAAGAAATGTC
gi|28 : TGTCTTACTTCAAAGTAA--GTGTGCAAACTTTTT-AAAAAAAATCTCCGCGCTAGAAGTAACTTGAATAAA
gi|30 : ATCTCCGCGCTAGAACTTACTCGAAGAATCGTCt
Alignments
lowQualScore : 1 111111111111
lowQualScore : 0 8888888 1 3 1 3 66 3 1 2 1 2 2 1 0 666666 1 6 1 444444444444 1 33333 222 44 1 2 1 0 33 6 1 1 1
lowQualScore : . ....... . . . . .. . . . . . . . . ...... . . . ............ . ..... ... .. . . . . .. . . . .
lowQualScore : 7 7777777 1 6 7 3 99 3 6 6 6 6 6 0 4 444444 6 4 6 888888888888 5 88888 777 22 4 5 6 4 77 2 5 1 0
consensus : CGTAGAAATT-------TATGAAAATCACTGTATGAAATGTGAAACCCAAAATAGCATCATGACT-T-TT--T-CTGTTTTAGATACTTTATCTTTTGTTACATGGGTGACAACAATA-TTTTGTTGAAATATATCACTTTNTT-AGTAAATNAAACANGATTTATAACTTACACCCNTTTGCTGTTTTTTCTTT-T----AAAAAATGTAAA-ACGGTGTAGTTT-AAAAATA-GTCGTAGC------------AAAA-A-----A---AC--AAGCATGGTGACCTATATTTTTTTCTAG-TGTTTTAAACTTGTCTTACTTCAAAGTACTTGTGTGCAAAA--TTT-AAAA-AAAATCTCCGCGCTAGAAGTNACTCGAAGAAACGTC
Reference ( family-5015 ) : CGTAGAAATT-------TATGAAAATCACTGTATGAAATGTGAAACCCAAAATAGCATCATGACT-T-TT--T-CTGTTTTAGATACTTTATCTTTTGTTACATGGGTGACAACAATA-TTTTGTTGAAATATATCACTTTNTT-AGTAAATNAAACANGATTTATAACTTACACCCNTTTGCTGTTTTTTCTTT-T----AAAAAATGTAAA-ACGGTGTAGTTT-AAAAATA-GTCGTAGC------------AAAA-A-----A---AC--AAGCATGGTGACCTATATTTTTTTCTAG-TGTTTTAAACTTGTCTTACTTCAAAGTACTTGTGTGCAAAA--TTT-AAAA-AAAATCTCCGCGCTAGAAGTNACTCGAAGAAACGTC
gi|1 : CGTAGCAATT-------TATGAAAATT-TTGTATGAATAATCAAACCCAAAATAGCATCATGATT-T-TTTTT-CTGTTTTAGATACTTTATCCTTTGTTACATGGGTGACAACAATA-TTTTGTTGAAATATATCACTTTTTC-AGTAAAT-AAACATGATTTATAACTTGCATCTCTTTGCTGTCTTTTCTTT-A----AAAAAATATAAA-ACAGTGTAGTTA-AAAATTA-GTCGTAGCAAAAATAACATAAAAA-A-----A---AC--AAGCATGATAACCTATTTTTTTTTCAAG-TGTTTTAAACTTGTCTTACTTCAAAGTACTTGTGCGC---------------AAAATCTCCGCGCTAGAAGTAACTTAAAGAAATGTC
gi|10 : tGTAGCAATC-------CATAAAAA-CACTGAATGAAAGGTGAAACCCTAAATAGCTTCATGATTAT-TT--T-CTGTTTCTGATACTTTATCTTTTGTTACATGGATGACAACAATA-TTTTGTTGAAATATATGACTTCTTT-AGTAAATAAAGCATGATTCATAACT------CATTTACTGTCTTTTC-TT-T----AAAAAATGAAAA-ACTGTGTAGCTTAAAAAACA-GTCGTAGCAAAA--------AAAA-A-----A---AC--AAGCATGTTGATCTATATTTTAGTCTAG-TGTTTTAAACTCG---------AAAA-ACTTGTGGGTAAAA--TTA-AAAA-AAAATCTCTTCGCGAGAAGTAACATGAAGAAATGT
gi|11 : tCGTAGCAATT-------TATGAAAATCATTGTATAAAAGTTGAAACCCAAAATAGCATCAT-ATT-T-TTTTT-CTGTTTTAGATACTTTATCTTCTGTTACATGAATGACAACAATATTTTTGTTGAAATATATCACTTTTTT-AGGAAATAAAACGTGATTCATAACTTGCATCCCTCTGCAG-TATTTCTTT-A----AAAAAATGTAAA-AAGGTATTGTTT-AAAATAA-GTCATAGC------------AAAA-AAAAACA---AC--AAGCATGGCGACCTATAC-------------------ACTTGTCTTACTTCAAAGTACTTGTGTGCAAAA--TTT-AAAA-AAAAT---CGCGCTAGAAGTTTCTCAAAGAAATGTC
gi|12 : tGCATGAATTGTGAAACTCAAAATAGCATCATGACT-T-TT--T-CTGTTTTAGATACTTTAGCTTTTGTTACATGAGTGACAACAATA-TTTTGTTGAAATATATCACTTTGTT-AGTAAATCAAACAAGATTTATAACTTACACCCATTTGCTGTTTTTTTTTC-TTTAAAAAAAAAGTAAA-ACGGCGTAGTTT-AAAAATA-GTCATAGC------------AAAA-A-----C---AC--AAGCATGGTGACCTATATTTGTTT-TAG-TGTTTTAAACTTGTCTTACTTCAAAGTACTTGTGTGCAAAA--TTT-AAAA-AAAATCTCCGCGCTAGAACTTACTCGAAGAAACGT
gi|13 : ATTGTATGAAAGGTGAAACCCAAAATAGCATCATGA-T-T-TT--T-CTGCTTTAGATACTTTATCTTTTGTGACATGGATGACAACAATA-TTTTGTTAAAATATATCACTCTTTT-AGTAAATAAAACATAATTTATAACTTTCACACCTTTGCTGTCTTTTCTTT-A----AAAAAATGTAAA-ACGGTGTAGTTT--AAAATAGGTCGTACCA-----------AAAA-A-----A---AC--AAGCATGGTGACCTG-AATTTTTTCAAG-TGTTTTAAACTTGTCTTACTTCAAAGTCCTTGTGTGCAAAA--TTTAAAAA-AAAATCTCCGCGCTAGAAGTAACTCGAAGAAA
gi|14 : CGTAGAAATTCATGATGTATGAAAATCAGTGTATGAAATGTGAAACTCAAAATAGCATCATGACT-T-TT--T-CTGTTTTAGATACTTTATCTTTTGTTACATGATTGACAACAATA-TTTTGTTGAAATATATCACTTTGTT-AGTAAATTAATCAAGATTTATAACTTACACCCATTTGCTGTTTTTTC-TT-T----AAAAAATGTAAA-ACGGTGTAATTT-AAAAATA-GT--TA----------------------------------------------TATCTTTTTT--TAG-TGTTTTAAACTAGTCTTACTTCAAAGTACTTTTGTGCAAAA--TTT-AAAA-AAAATCTCCGCGCTAGAACTTACTCGAAGAAA
gi|15 : AACCCCAAATAGCATCATAATT-T-TT--T-CTGTTTTAGATACTTTATCTTTTGTTACATGGATTACAACAATA-TTTGGTTGAAATATATCACTTTTTTTAGTAAATAAAACATGATTTATAACTTGCACCCCTTTGCTGTCTTTTCTTT-A----AAAAAATGTAAA-ACGGTGTAGTTT-AAAATTA-GTCGTAGC------------AAAA-A-----A---AC--AAGCATGGTCACTTATATTTTTTTCTAG-TGTTTTAAACTTGTCTTACTTCAAAGTACTTGTGTGCAAAA--TTTAAAAA-AAAATCTCCGCGCTAGAAGTAACTCGAAGAAACGTC
gi|16 : AACACAAAATAGCATCATGATT-T-TT--TTCTAATTTAGATACTTTATCATTTGTTTCATGAATGACAAAAATA-TTTTGTTGAAATATTTCACTCTTTT-AGTAAATAAAACATGATTTATAACTTGCACCCCTTTGCTGTATTTTC-TT-T----AAAAAATGTAAA-ACGGTGTAGTTT-AAAATTA-GTCGTAGCG-----------AAAA-A-----A---AC--AAACAAGGTGACCTATATTTTTTGCTAG-TGTTTTAAACTTATCTTACTTCAAAGTACTTGTGTGCAAAA--TTT-AAAA-AAAATCTCCGCGCTAGAAGTAACTCGAAGTAATGTC
gi|17 : TGAAACCTAAAATAGCATCATGA-T-T-TT--T-CTGTTTGAGATACTTTATCTTTTGTTACATGGATGACAACAATA-TTTTGTTGAAATATATCACTTCTTA-AGTAAATAAAACATGATTTATATCTTACATACCTTTTCTTTTTTTTTCTT-T----AAAAAATG-AAA-ACTGTGTAGCTTAAAAAATA-GTCG-AAT------------AAAA-A-----A---ATAAAAGCATGGTGAACTATA--TTTTTCTAG-TGTTTTCAACTTGTCTTACTTCAAAGTACGTGTGTGC--AC--TTT-TTAA-ACAATCTCCGCACTAGAAGTAACTCTAAGAAATGTC
gi|18 : TGAAACCTAAAATAGCATCATGA-T-T-TT--T-CTGTTTGAGATACTTTATCTTTTGTTACATGGATGACAACAATA-TTTTGTTGAAATATATCACTTCTTA-AGTAAATAAAACATGATTTATATCTTACATACCTTTTCTTTTTTTTTCTT-T----AAAAAATG-AAA-ACTGTGTAGCTTAAAAAATA-GTCG-AAT------------AAAA-A-----A---ATAAAAGCATGGTGAACTATA--TTTTTCTAG-TGTTTTCAACTTGTCTTACTTCAAAGTACGTGTGTGC--AC--TTT-TTAA-ACAATCTCCGCACTAGAAGTAACTCTAAGAAATGT
gi|19 : CGTAGCAATT-------TATGAAAATCACTTTATGAAA-------------A-AGCATCAT-ATT-TGTT--T-ATGTTTTAGATATTGTATCTTTTGTTACATGGATGATAACAATA-TTTTGTTCATATATATCCCTTCCTT-AGTAAATAAAATA----TTATATCTTACACCTCATTGCAGTTTTTTCTTT-A----AGAAAAT-TAGATACGGTGTAGTTA-AAAAATA-GTCGTAGC------------AAAATA-----A---AC--AAGCATGGTGACCAATATGTTT---TAGTTCTTTTAAACTTGT----------------------CAAAA--TTT--TAG-AAATTCCTCGTGCTAGAAGTAACTCGAAGAAA
gi|2 : CGTAGAAATT-------TATGAAAATTACTGTATAAAATGTGAAACTCAAAAGAGCATCATGACT-T-TT--T-CTGTTTTAGATACTTTATCTTTTGTTACATGAGTGACAACAATA-TTTTGTTGAAATATATCACTTTGTT-AGTAAATTAAACAAGATTTATAACTTACACCAATTTGCTGTTTTTTTCTT-T----AAAAAATGTAAA-ACTGTGTAGTTT-AAAAATA-GTCATAGC------------AAAA-A-----A---AC--AAGCATGGGGACCTATATTTTTTTTTAG-TGTTTTAAACTTGTCTTACTTCAAAGTACTTGTGTGCAAAA--TTT-AAAA-AAAATCTCCGCGCTACAACTTACTCGAAGAAACGTCttc
gi|20 : AAACCCAAAATAACATCATGATT-T-TT--T-CTGTTTTAGATACTTTATCTTTTGTTACATGGATAACAACAATA-TTTTGTTGAAATATATCACTCTTAT-AGTCAATAAAACATGATTTATAACTTGCACCCCTTTGATGTCTTTTCTTT-TA---AAAAAATGTAAA-ACGGTGTAGTTT-AAGATTA-GTTGTAGC------------AAAA-C-----A---AC--AAGCATGGTGA-TTATA-TCTTTTCTAG-TTTTTTAAATTTGTCTTAATTCAAAGCATTTGTGTGCAAAA--T----------AATCT---TGTTAGAAGTAACTCGAAGA
gi|21 : CATCATGATT-T-TT--TTCTGTTTCAGATACTTTATCTT--------------------------TCGTTGAAATACATCACTTT-TA-AGTAAATAAAACATGTTTTATAACTTGCACCCTTTTGCTGTCTTTTCTTT-T----AAAAAATGTAAA-ACGGTGTATTTT-TAAATAA-ATCGTAGA------------AAAA-A-----A---AC--AAGCATGGTGACCTATATTTTTTTCTAG-TGTTTTAAACTTGTCTTACTTCAAAGTGCTTGAGTGAAAAA--TTTAAAAA-AAAATCTCCGCGCCAGAAGTTTCTCGAAGAAATGTCcatg
gi|22 : GTGACAACAATA-TTTTGTTGAAATATATCACTATGTT-AGTAAATTAAACAAGATTTATAACTTACACCCATTTGCTGTTTTTTC-TT-T----AAAAAATGTAAA-ACCGCATAGTTTAAAAAATA-GTCATAGC------------AAAA-A-----A---AC--AAGCATGGGGACCTATATTTTTTTTTAG-TGTTTTAAACTTGTCTTATTTCAAAGTACTTGTGTGCAAAA--TTT-AAAA-AAAATCTCCGCGCTAGAACTTATTCGAAGAAACGTC
gi|23 : aGACAATAATA-TTTTGTTGAAATATAGCACTCTTTT-AGTACATAAAACATGATTTATAACTTTCACCCCTTTGCTGTCTTTTCTTT-A----AAAAAATGTTAA-ACGGTGTAGTTT-AAAATTA-GTCGTAGC------------AAAA-A-----A---AC--AAGCATGGTGACCTATA-TTTTATCTTG-TGTTTTAAACTTGTCTTACTTCAAAGTCCTTGTGTGCAAAAT-TTT-AAAA-AAATTCTCAGCGCTAAAAGTAACTCTAGGAAATGT
gi|24 : CGTAGAAATT-------TATGAAAATTACTGTATGAAATGTGAAACTCAAAAGAGCATCATGACT-T-TT--T-CTATTTTAGATACTTTATCTTTTGTGACAGGAGTGACAACAATA-TTTTGTTGAAATATATCACTTTGTT-AGTAAATTAAACAAGATTTATAAATTACACCAATTTGCTGTTTTTTC-TT-T----AAATAATGTCAA-ACGGTGTAGTTT-AAAAATA-GTCATAGC------------AAAA-A-----A---AC--AAGCATGGGGACC
gi|25 : atTT-GGTAAATTAAACAAGATTTATAACTTACACCCATTTGCTGTTTTTTCTTT------AAAAAATGTAAA-ACGGTGTAGTTT-AAAAATA-GTCATAGC------------AAAA-A-----A---AC--AAGCAAGGCGACCTATATTTTTTTTTAG-TGTTTTAAACTTGTCTTACTTCAAAGTGCTTGTGTGCAAAA--TTT-AAGA-AAAATCTCCGTGCCAGAACTTACTCAAAGAAACGTC
gi|26 : tgtCGTAGAAATT-------TATGAAAATTACTGTATGAAATGTAAAACTCAAAAGAGCATCATCACT-T-TT--T-CTGTTTTAGATACTTTATCTTTTGTTACATGAGTGACAACAATA-TTTT-T---AATATAT
gi|27 : at-A-----A---AC--AAGCATGGTGATCTATATTTTTT-CTAG-TGTTTTAAACTTGTCTTACGTCAAAGTAA--ATGTGCAAAA--TTT-AAAAAAAAATCTCCGCGCTAGAAGTAACTCGAAGAAATGTC
gi|28 : TGTCTTACTTCAAAGTAA--GTGTGCAAACTTTTT-AAAA-AAAATCTCCGCGCTAGAAGTAACTTGAATAAA
gi|29 : GAAACCTCAAATAGCATCATGATT-T-TT--T-CTGTTTTAGATAt
gi|3 : aaCGTAGAAATT-------TATGAAAATCACTGTATGAAATGTGAAACTCACAATAGCATCATGACT-T-TT--T-CTGTTTGAGATACTTTATCTTTTGTTACATGAGTGACAACAACA-TTTTGTTGAAATATATCACTTTGTT-AATAAATTAAACAAGATTTATATCTTACACCCATTTGCTGTTTTTTCTTC-C----AAAAAATGTAAA-ACGGTGTAGTTT-AGAAATA-GTCATAGC------------AAAA-A-----A---AC--AAGCATGGTGACCTATATTTTTTTTTAG-TGTTTTAAACTTGTCTTACTTCAAAGTACTTGTGTGCAAAA--TTT-AAAA-AAAATCTCCGTGCTAGAACTTACTCGAAGAAACGTC
gi|30 : ATCTCCGCGCTAGAACTTACTCGAAGAATCGTC
gi|4 : CGTAGAAATT-------TATGAAAATTACCGTATGAAATGTGAAACTCAAAAGAGCATCATGACT-T-TT--T-CTGTTTTAGATGCTTTATCTTTTGTTACATGAGTGACAACAATA-CTTTGTTGAAATATATCACTTTGTT-AATAAATTAAACAAGATTTATAACTTACACCAATTTGCTGTTTTTTC-TT-T----AAAAAATGTTAA-ACGGTGTAGTTT-AAAAATA-GTCATAGC------------AAAA-A-----A---AC--AAGCATGGGGACCTATATTATTTTTTAG-TGTTTTAAACTTGTCTTACTTCAAAGTACATGTGTGCAAAA--TTT--AAA-AAAATCTTCGGGCTAGAACTTACTCGAAGAAACGTCt
gi|5 : atCGTAGAAATT-------TATGAAAATTACTGTATGAAATGTGAAACTCAAAAGAGCATCATGACA-T-TT--T-CTGTTTTAGATACTTTATCTTTTGTTACATGAGTGACAACAATA-TTCTGTTGAAATATATCACTTTGTT-AGTAAATTAAACACGATTTATAACTTACACCAATTTGCTGTTTTTTC-TT-T----AAAAAATGTAAA-ACAGTGTAGTTT-AAAAATA-GTCATAGC------------CAAA-A-----A---AC--AAGCATGGGGACCTATATATTTT--TAG-TGTTTTAAACTTGTCGTACTTCAAAGTACTTGTGTGCAAAA--TTT-AAAA-AAAATCTCCGCGCTAGAACTTACTCGGAGAAACGT
gi|6 : atTAGCAATT-------TATGAAAATCATTGTATGAAAGGTGAAACCCAAAACAGCATCATGATT-TGTT--T-CTGTTTTAGATACTTTATCTTTTGTTTCATGGATGACAACAATA-TTTTGTTGAAATATATCACTCTTTT-AGTAAATAAAACAAGATTTATAACTTGCACTCCTTTGCTGTCTTTTCTTTAT----AAAAAA-ATAAA-ATGGTGTTGTTT-AAAATTA-GTCGTAGC-------------AAA-A-----A---AC--AAGCATGGTTACCTATATTGTTTTTTAG-TGTTTTAAACTTGTCTTACTTCAAAGTAA--GTGTGCAAAA--TTTAAAAA-AAAATCTCTGCGCTAGAAGTAACTCGAAGAAATATC
gi|7 : aCGTAGAAATG-------TATGAAAATTACTGTATGAAATGTGAAACTCAAAATAGCATCATGACT-T-TT--T-CTGTTTTAGATACTTTATCTTTTGTTACATGAGTGACAACAATA-TTTTGTTGCAATATATCACTTTGTT-AGTAAATTAAACAAGATTTATAACTTACACCCATTTTCTGTTTTTTC-TT-T----AAAATAAGTAAA-ACGGTGTAGTTT-AAAAATA-GTCATAGC------------AAAA-A-----A---AC--AAGCATGGGGACCTATATTATTTTTTAG-TGTTTTAAACTTGTCTTACTTCAAAGTACTTGTGTGCAAAA--TTT-AAAA-AAAATCTCTGCGCTAGAACTTACTCGAAGAAACG
gi|8 : GTAAACATT-------TATGAAAATCACTGTATGAAATGTGAAACTCAAAATAGCATCATGACT-T-TT--T-CTGTTTTAGATACTGTATCTTTTGTAACATGAGTGACAACAATA-TTTTGTTGAAATATATCACTTTGTT-AGTAAATTAAACAAGATTTATAACTTACACCCATTTGCTGTTTTTTTTTT-T----AAAAAATGTAAA-ACGGTGTAGTTT-TAAAATA-GTCATAGC------------AAAA-A-----A---AC--AAGCATGGTGACCTATAGTTTTTT-TAG-TGTTTTGAACTGGTCGTACTTTAAAGTACTTGTGTGCAAAA--TTT-AAAA-AAAATCTCTGCGCTAGAACTTACTCCAAGAAACGT
gi|9 : CGTAATAATT-------TATGAAAATCACTGTATGAAATGTGAAACTCAAACTTACATCAT-ATT-T-TTTTT-CTGTTTAAGATACTTTATCTTTTGTTACATGGATGACAACAATA-TTTTGTTGAAATATATCACTTTGTT-AGTAAATAAAACATAATTTAAAACTTACACACCTTTGCTGTTTTTTC-TT-T----AAAAAATGTAAA-AAGGTGTAGTTT-AAAAAAA-GTCATAGC------------AAAA-A-----AAACAC--AAACATGGTGACCTATATTTTTTTCGAG-TGTTTTAAACTTGTCTTACTTTAAAGTACTTGTGTGCAAAT--TTT-AAAA-AAAATCACCGCGCTAGAATTAACTCG
Alignments
lowQualScore : 1 111111111111
lowQualScore : 0 8888888 1 3 1 3 66 3 1 2 1 2 2 1 0 666666 1 6 1 444444444444 1 33333 222 44 1 2 1 0 33 6 1 1 1
lowQualScore : . ....... . . . . .. . . . . . . . . ...... . . . ............ . ..... ... .. . . . . .. . . . .
lowQualScore : 7 7777777 1 6 7 3 99 3 6 6 6 6 6 0 4 444444 6 4 6 888888888888 5 88888 777 22 4 5 6 4 77 2 5 1 0
consensus : CGTAGAAATT-------TATGAAAATCACTGTATGAAATGTGAAACCCAAAATAGCATCATGACT-T-TT--T-CTGTTTTAGATACTTTATCTTTTGTTACATGGGTGACAACAATA-TTTTGTTGAAATATATCACTTTNTT-AGTAAATNAAACANGATTTATAACTTACACCCNTTTGCTGTTTTTTCTTT-T----AAAAAATGTAAA-ACGGTGTAGTTT-AAAAATA-GTCGTAGC------------AAAA-A-----A---AC--AAGCATGGTGACCTATATTTTTTTCTAG-TGTTTTAAACTTGTCTTACTTCAAAGTACTTGTGTGCAAAA--TTT-AAAA-AAAATCTCCGCGCTAGAAGTNACTCGAAGAAACGTC
Reference ( family-5015 ) : CGTAGAAATT-------TATGAAAATCACTGTATGAAATGTGAAACCCAAAATAGCATCATGACT-T-TT--T-CTGTTTTAGATACTTTATCTTTTGTTACATGGGTGACAACAATA-TTTTGTTGAAATATATCACTTTNTT-AGTAAATNAAACANGATTTATAACTTACACCCNTTTGCTGTTTTTTCTTT-T----AAAAAATGTAAA-ACGGTGTAGTTT-AAAAATA-GTCGTAGC------------AAAA-A-----A---AC--AAGCATGGTGACCTATATTTTTTTCTAG-TGTTTTAAACTTGTCTTACTTCAAAGTACTTGTGTGCAAAA--TTT-AAAA-AAAATCTCCGCGCTAGAAGTNACTCGAAGAAACGTC
gi|1 : CGTAGCAATT-------TATGAAAATT-TTGTATGAATAATCAAACCCAAAATAGCATCATGATT-T-TTTTT-CTGTTTTAGATACTTTATCCTTTGTTACATGGGTGACAACAATA-TTTTGTTGAAATATATCACTTTTTC-AGTAAAT-AAACATGATTTATAACTTGCATCTCTTTGCTGTCTTTTCTTT-A----AAAAAATATAAA-ACAGTGTAGTTA-AAAATTA-GTCGTAGCAAAAATAACATAAAAA-A-----A---AC--AAGCATGATAACCTATTTTTTTTTCAAG-TGTTTTAAACTTGTCTTACTTCAAAGTACTTGTGCGC---------------AAAATCTCCGCGCTAGAAGTAACTTAAAGAAATGTC
gi|10 : tGTAGCAATC-------CATAAAAA-CACTGAATGAAAGGTGAAACCCTAAATAGCTTCATGATTAT-TT--T-CTGTTTCTGATACTTTATCTTTTGTTACATGGATGACAACAATA-TTTTGTTGAAATATATGACTTCTTT-AGTAAATAAAGCATGATTCATAACT------CATTTACTGTCTTTTC-TT-T----AAAAAATGAAAA-ACTGTGTAGCTTAAAAAACA-GTCGTAGCAAAA--------AAAA-A-----A---AC--AAGCATGTTGATCTATATTTTAGTCTAG-TGTTTTAAACTCG---------AAAA-ACTTGTGGGTAAAA--TTA-AAAA-AAAATCTCTTCGCGAGAAGTAACATGAAGAAATGT
gi|11 : tCGTAGCAATT-------TATGAAAATCATTGTATAAAAGTTGAAACCCAAAATAGCATCAT-ATT-T-TTTTT-CTGTTTTAGATACTTTATCTTCTGTTACATGAATGACAACAATATTTTTGTTGAAATATATCACTTTTTT-AGGAAATAAAACGTGATTCATAACTTGCATCCCTCTGCAG-TATTTCTTT-A----AAAAAATGTAAA-AAGGTATTGTTT-AAAATAA-GTCATAGC------------AAAA-AAAAACA---AC--AAGCATGGCGACCTATAC-------------------ACTTGTCTTACTTCAAAGTACTTGTGTGCAAAA--TTT-AAAA-AAAAT---CGCGCTAGAAGTTTCTCAAAGAAATGTC
gi|12 : tGCATGAATTGTGAAACTCAAAATAGCATCATGACT-T-TT--T-CTGTTTTAGATACTTTAGCTTTTGTTACATGAGTGACAACAATA-TTTTGTTGAAATATATCACTTTGTT-AGTAAATCAAACAAGATTTATAACTTACACCCATTTGCTGTTTTTTTTTC-TTTAAAAAAAAAGTAAA-ACGGCGTAGTTT-AAAAATA-GTCATAGC------------AAAA-A-----C---AC--AAGCATGGTGACCTATATTTGTTT-TAG-TGTTTTAAACTTGTCTTACTTCAAAGTACTTGTGTGCAAAA--TTT-AAAA-AAAATCTCCGCGCTAGAACTTACTCGAAGAAACGT
gi|13 : ATTGTATGAAAGGTGAAACCCAAAATAGCATCATGA-T-T-TT--T-CTGCTTTAGATACTTTATCTTTTGTGACATGGATGACAACAATA-TTTTGTTAAAATATATCACTCTTTT-AGTAAATAAAACATAATTTATAACTTTCACACCTTTGCTGTCTTTTCTTT-A----AAAAAATGTAAA-ACGGTGTAGTTT--AAAATAGGTCGTACCA-----------AAAA-A-----A---AC--AAGCATGGTGACCTG-AATTTTTTCAAG-TGTTTTAAACTTGTCTTACTTCAAAGTCCTTGTGTGCAAAA--TTTAAAAA-AAAATCTCCGCGCTAGAAGTAACTCGAAGAAA
gi|14 : CGTAGAAATTCATGATGTATGAAAATCAGTGTATGAAATGTGAAACTCAAAATAGCATCATGACT-T-TT--T-CTGTTTTAGATACTTTATCTTTTGTTACATGATTGACAACAATA-TTTTGTTGAAATATATCACTTTGTT-AGTAAATTAATCAAGATTTATAACTTACACCCATTTGCTGTTTTTTC-TT-T----AAAAAATGTAAA-ACGGTGTAATTT-AAAAATA-GT--TA----------------------------------------------TATCTTTTTT--TAG-TGTTTTAAACTAGTCTTACTTCAAAGTACTTTTGTGCAAAA--TTT-AAAA-AAAATCTCCGCGCTAGAACTTACTCGAAGAAA
gi|15 : AACCCCAAATAGCATCATAATT-T-TT--T-CTGTTTTAGATACTTTATCTTTTGTTACATGGATTACAACAATA-TTTGGTTGAAATATATCACTTTTTTTAGTAAATAAAACATGATTTATAACTTGCACCCCTTTGCTGTCTTTTCTTT-A----AAAAAATGTAAA-ACGGTGTAGTTT-AAAATTA-GTCGTAGC------------AAAA-A-----A---AC--AAGCATGGTCACTTATATTTTTTTCTAG-TGTTTTAAACTTGTCTTACTTCAAAGTACTTGTGTGCAAAA--TTTAAAAA-AAAATCTCCGCGCTAGAAGTAACTCGAAGAAACGTC
gi|16 : AACACAAAATAGCATCATGATT-T-TT--TTCTAATTTAGATACTTTATCATTTGTTTCATGAATGACAAAAATA-TTTTGTTGAAATATTTCACTCTTTT-AGTAAATAAAACATGATTTATAACTTGCACCCCTTTGCTGTATTTTC-TT-T----AAAAAATGTAAA-ACGGTGTAGTTT-AAAATTA-GTCGTAGCG-----------AAAA-A-----A---AC--AAACAAGGTGACCTATATTTTTTGCTAG-TGTTTTAAACTTATCTTACTTCAAAGTACTTGTGTGCAAAA--TTT-AAAA-AAAATCTCCGCGCTAGAAGTAACTCGAAGTAATGTC
gi|17 : TGAAACCTAAAATAGCATCATGA-T-T-TT--T-CTGTTTGAGATACTTTATCTTTTGTTACATGGATGACAACAATA-TTTTGTTGAAATATATCACTTCTTA-AGTAAATAAAACATGATTTATATCTTACATACCTTTTCTTTTTTTTTCTT-T----AAAAAATG-AAA-ACTGTGTAGCTTAAAAAATA-GTCG-AAT------------AAAA-A-----A---ATAAAAGCATGGTGAACTATA--TTTTTCTAG-TGTTTTCAACTTGTCTTACTTCAAAGTACGTGTGTGC--AC--TTT-TTAA-ACAATCTCCGCACTAGAAGTAACTCTAAGAAATGTC
gi|18 : TGAAACCTAAAATAGCATCATGA-T-T-TT--T-CTGTTTGAGATACTTTATCTTTTGTTACATGGATGACAACAATA-TTTTGTTGAAATATATCACTTCTTA-AGTAAATAAAACATGATTTATATCTTACATACCTTTTCTTTTTTTTTCTT-T----AAAAAATG-AAA-ACTGTGTAGCTTAAAAAATA-GTCG-AAT------------AAAA-A-----A---ATAAAAGCATGGTGAACTATA--TTTTTCTAG-TGTTTTCAACTTGTCTTACTTCAAAGTACGTGTGTGC--AC--TTT-TTAA-ACAATCTCCGCACTAGAAGTAACTCTAAGAAATGT
gi|19 : CGTAGCAATT-------TATGAAAATCACTTTATGAAA-------------A-AGCATCAT-ATT-TGTT--T-ATGTTTTAGATATTGTATCTTTTGTTACATGGATGATAACAATA-TTTTGTTCATATATATCCCTTCCTT-AGTAAATAAAATA----TTATATCTTACACCTCATTGCAGTTTTTTCTTT-A----AGAAAAT-TAGATACGGTGTAGTTA-AAAAATA-GTCGTAGC------------AAAATA-----A---AC--AAGCATGGTGACCAATATGTTT---TAGTTCTTTTAAACTTGT----------------------CAAAA--TTT--TAG-AAATTCCTCGTGCTAGAAGTAACTCGAAGAAA
gi|2 : CGTAGAAATT-------TATGAAAATTACTGTATAAAATGTGAAACTCAAAAGAGCATCATGACT-T-TT--T-CTGTTTTAGATACTTTATCTTTTGTTACATGAGTGACAACAATA-TTTTGTTGAAATATATCACTTTGTT-AGTAAATTAAACAAGATTTATAACTTACACCAATTTGCTGTTTTTTTCTT-T----AAAAAATGTAAA-ACTGTGTAGTTT-AAAAATA-GTCATAGC------------AAAA-A-----A---AC--AAGCATGGGGACCTATATTTTTTTTTAG-TGTTTTAAACTTGTCTTACTTCAAAGTACTTGTGTGCAAAA--TTT-AAAA-AAAATCTCCGCGCTACAACTTACTCGAAGAAACGTCttc
gi|20 : AAACCCAAAATAACATCATGATT-T-TT--T-CTGTTTTAGATACTTTATCTTTTGTTACATGGATAACAACAATA-TTTTGTTGAAATATATCACTCTTAT-AGTCAATAAAACATGATTTATAACTTGCACCCCTTTGATGTCTTTTCTTT-TA---AAAAAATGTAAA-ACGGTGTAGTTT-AAGATTA-GTTGTAGC------------AAAA-C-----A---AC--AAGCATGGTGA-TTATA-TCTTTTCTAG-TTTTTTAAATTTGTCTTAATTCAAAGCATTTGTGTGCAAAA--T----------AATCT---TGTTAGAAGTAACTCGAAGA
gi|21 : CATCATGATT-T-TT--TTCTGTTTCAGATACTTTATCTT--------------------------TCGTTGAAATACATCACTTT-TA-AGTAAATAAAACATGTTTTATAACTTGCACCCTTTTGCTGTCTTTTCTTT-T----AAAAAATGTAAA-ACGGTGTATTTT-TAAATAA-ATCGTAGA------------AAAA-A-----A---AC--AAGCATGGTGACCTATATTTTTTTCTAG-TGTTTTAAACTTGTCTTACTTCAAAGTGCTTGAGTGAAAAA--TTTAAAAA-AAAATCTCCGCGCCAGAAGTTTCTCGAAGAAATGTCcatg
gi|22 : GTGACAACAATA-TTTTGTTGAAATATATCACTATGTT-AGTAAATTAAACAAGATTTATAACTTACACCCATTTGCTGTTTTTTC-TT-T----AAAAAATGTAAA-ACCGCATAGTTTAAAAAATA-GTCATAGC------------AAAA-A-----A---AC--AAGCATGGGGACCTATATTTTTTTTTAG-TGTTTTAAACTTGTCTTATTTCAAAGTACTTGTGTGCAAAA--TTT-AAAA-AAAATCTCCGCGCTAGAACTTATTCGAAGAAACGTC
gi|23 : aGACAATAATA-TTTTGTTGAAATATAGCACTCTTTT-AGTACATAAAACATGATTTATAACTTTCACCCCTTTGCTGTCTTTTCTTT-A----AAAAAATGTTAA-ACGGTGTAGTTT-AAAATTA-GTCGTAGC------------AAAA-A-----A---AC--AAGCATGGTGACCTATA-TTTTATCTTG-TGTTTTAAACTTGTCTTACTTCAAAGTCCTTGTGTGCAAAAT-TTT-AAAA-AAATTCTCAGCGCTAAAAGTAACTCTAGGAAATGT
gi|24 : CGTAGAAATT-------TATGAAAATTACTGTATGAAATGTGAAACTCAAAAGAGCATCATGACT-T-TT--T-CTATTTTAGATACTTTATCTTTTGTGACAGGAGTGACAACAATA-TTTTGTTGAAATATATCACTTTGTT-AGTAAATTAAACAAGATTTATAAATTACACCAATTTGCTGTTTTTTC-TT-T----AAATAATGTCAA-ACGGTGTAGTTT-AAAAATA-GTCATAGC------------AAAA-A-----A---AC--AAGCATGGGGACC
gi|25 : atTT-GGTAAATTAAACAAGATTTATAACTTACACCCATTTGCTGTTTTTTCTTT------AAAAAATGTAAA-ACGGTGTAGTTT-AAAAATA-GTCATAGC------------AAAA-A-----A---AC--AAGCAAGGCGACCTATATTTTTTTTTAG-TGTTTTAAACTTGTCTTACTTCAAAGTGCTTGTGTGCAAAA--TTT-AAGA-AAAATCTCCGTGCCAGAACTTACTCAAAGAAACGTC
gi|26 : tgtCGTAGAAATT-------TATGAAAATTACTGTATGAAATGTAAAACTCAAAAGAGCATCATCACT-T-TT--T-CTGTTTTAGATACTTTATCTTTTGTTACATGAGTGACAACAATA-TTTT-T---AATATAT
gi|27 : at-A-----A---AC--AAGCATGGTGATCTATATTTTTT-CTAG-TGTTTTAAACTTGTCTTACGTCAAAGTAA--ATGTGCAAAA--TTT-AAAAAAAAATCTCCGCGCTAGAAGTAACTCGAAGAAATGTC
gi|28 : TGTCTTACTTCAAAGTAA--GTGTGCAAACTTTTT-AAAA-AAAATCTCCGCGCTAGAAGTAACTTGAATAAA
gi|29 : GAAACCTCAAATAGCATCATGATT-T-TT--T-CTGTTTTAGATAt
gi|3 : aaCGTAGAAATT-------TATGAAAATCACTGTATGAAATGTGAAACTCACAATAGCATCATGACT-T-TT--T-CTGTTTGAGATACTTTATCTTTTGTTACATGAGTGACAACAACA-TTTTGTTGAAATATATCACTTTGTT-AATAAATTAAACAAGATTTATATCTTACACCCATTTGCTGTTTTTTCTTC-C----AAAAAATGTAAA-ACGGTGTAGTTT-AGAAATA-GTCATAGC------------AAAA-A-----A---AC--AAGCATGGTGACCTATATTTTTTTTTAG-TGTTTTAAACTTGTCTTACTTCAAAGTACTTGTGTGCAAAA--TTT-AAAA-AAAATCTCCGTGCTAGAACTTACTCGAAGAAACGTC
gi|30 : ATCTCCGCGCTAGAACTTACTCGAAGAATCGTC
gi|4 : CGTAGAAATT-------TATGAAAATTACCGTATGAAATGTGAAACTCAAAAGAGCATCATGACT-T-TT--T-CTGTTTTAGATGCTTTATCTTTTGTTACATGAGTGACAACAATA-CTTTGTTGAAATATATCACTTTGTT-AATAAATTAAACAAGATTTATAACTTACACCAATTTGCTGTTTTTTC-TT-T----AAAAAATGTTAA-ACGGTGTAGTTT-AAAAATA-GTCATAGC------------AAAA-A-----A---AC--AAGCATGGGGACCTATATTATTTTTTAG-TGTTTTAAACTTGTCTTACTTCAAAGTACATGTGTGCAAAA--TTT--AAA-AAAATCTTCGGGCTAGAACTTACTCGAAGAAACGTCt
gi|5 : atCGTAGAAATT-------TATGAAAATTACTGTATGAAATGTGAAACTCAAAAGAGCATCATGACA-T-TT--T-CTGTTTTAGATACTTTATCTTTTGTTACATGAGTGACAACAATA-TTCTGTTGAAATATATCACTTTGTT-AGTAAATTAAACACGATTTATAACTTACACCAATTTGCTGTTTTTTC-TT-T----AAAAAATGTAAA-ACAGTGTAGTTT-AAAAATA-GTCATAGC------------CAAA-A-----A---AC--AAGCATGGGGACCTATATATTTT--TAG-TGTTTTAAACTTGTCGTACTTCAAAGTACTTGTGTGCAAAA--TTT-AAAA-AAAATCTCCGCGCTAGAACTTACTCGGAGAAACGT
gi|6 : atTAGCAATT-------TATGAAAATCATTGTATGAAAGGTGAAACCCAAAACAGCATCATGATT-TGTT--T-CTGTTTTAGATACTTTATCTTTTGTTTCATGGATGACAACAATA-TTTTGTTGAAATATATCACTCTTTT-AGTAAATAAAACAAGATTTATAACTTGCACTCCTTTGCTGTCTTTTCTTTAT----AAAAAA-ATAAA-ATGGTGTTGTTT-AAAATTA-GTCGTAGC-------------AAA-A-----A---AC--AAGCATGGTTACCTATATTGTTTTTTAG-TGTTTTAAACTTGTCTTACTTCAAAGTAA--GTGTGCAAAA--TTTAAAAA-AAAATCTCTGCGCTAGAAGTAACTCGAAGAAATATC
gi|7 : aCGTAGAAATG-------TATGAAAATTACTGTATGAAATGTGAAACTCAAAATAGCATCATGACT-T-TT--T-CTGTTTTAGATACTTTATCTTTTGTTACATGAGTGACAACAATA-TTTTGTTGCAATATATCACTTTGTT-AGTAAATTAAACAAGATTTATAACTTACACCCATTTTCTGTTTTTTC-TT-T----AAAATAAGTAAA-ACGGTGTAGTTT-AAAAATA-GTCATAGC------------AAAA-A-----A---AC--AAGCATGGGGACCTATATTATTTTTTAG-TGTTTTAAACTTGTCTTACTTCAAAGTACTTGTGTGCAAAA--TTT-AAAA-AAAATCTCTGCGCTAGAACTTACTCGAAGAAACG
gi|8 : GTAAACATT-------TATGAAAATCACTGTATGAAATGTGAAACTCAAAATAGCATCATGACT-T-TT--T-CTGTTTTAGATACTGTATCTTTTGTAACATGAGTGACAACAATA-TTTTGTTGAAATATATCACTTTGTT-AGTAAATTAAACAAGATTTATAACTTACACCCATTTGCTGTTTTTTTTTT-T----AAAAAATGTAAA-ACGGTGTAGTTT-TAAAATA-GTCATAGC------------AAAA-A-----A---AC--AAGCATGGTGACCTATAGTTTTTT-TAG-TGTTTTGAACTGGTCGTACTTTAAAGTACTTGTGTGCAAAA--TTT-AAAA-AAAATCTCTGCGCTAGAACTTACTCCAAGAAACGT
gi|9 : CGTAATAATT-------TATGAAAATCACTGTATGAAATGTGAAACTCAAACTTACATCAT-ATT-T-TTTTT-CTGTTTAAGATACTTTATCTTTTGTTACATGGATGACAACAATA-TTTTGTTGAAATATATCACTTTGTT-AGTAAATAAAACATAATTTAAAACTTACACACCTTTGCTGTTTTTTC-TT-T----AAAAAATGTAAA-AAGGTGTAGTTT-AAAAAAA-GTCATAGC------------AAAA-A-----AAACAC--AAACATGGTGACCTATATTTTTTTCGAG-TGTTTTAAACTTGTCTTACTTTAAAGTACTTGTGTGCAAAT--TTT-AAAA-AAAATCACCGCGCTAGAATTAACTCG
blockSeqs : CATGATG G T A G TT T T T T A T A T TTTAA T A G AAAA T AAAAC AAC AA T C T TT A A G A
blockSeqs : . G T . G TT T . T . A T C T TA . A . A . . . AA C C . T A . G T
blockSeqs : . T C . . . . . G . C A A T AT . A . G . . . . T C . . A . C T
blockSeqs : . G C . . . . . T . A T C T T . A . . . . . . A C . . A . G A
blockSeqs : . T T . . . . . G . T A A C A . . . . . . . . T C . . . . C T
blockSeqs : . T T . . . . . T . A T C C A . . . . . . . . T C . . . . G A
blockSeqs : . T T . . . . . T . A T C T T . . . . . . . . T T . . . . G A
blockSeqs : . T C . . . . . T . A T C C A . . . . . . . . T C . . . . G A
blockSeqs : . T T . . . . . T . A T C T T . . . . . . . . T C . . . . G A
blockSeqs : . T T . . . . . C . A A C T T . . . . . . . . T T . . . . G A
blockSeqs : . T C . . . . . G . T T A T T . . . . . . . . T C . . . . C T
blockSeqs : . G C . . . . . T . A T C T A . . . . . . . . T T . . . . G A
blockSeqs : . T T . . . . . G . A A T T T . . . . . . . . T C . . . . G T
blockSeqs : . T C . . . . . T . T T A T T . . . . . . . . T T . . . . C T
blockSeqs : T C . . . . . G . A A C T T . . . . . . . . T T . . . . G A
blockSeqs : . C . . . . . G . T A A . A . . . . . . . . T T . . . . C T
blockSeqs : T . . . . . G . T A A . T . . . . . . . . T T . . . . G A
blockSeqs : C . . . . . G . T A A . C . . . . . . . . T C . . . . G A
blockSeqs : C . . . . . T . T C A . T . . . . . . . . G . . . . . C T
blockSeqs : T . . . . . G . T A A . T . . . . . . . . T . . . . . C T
blockSeqs : . . . . . . G . A A C . T . . . . . . . . . . . . . . C T
blockSeqs : . . . . . . G . T A A . T . . . . . . . . . . . . . . C T
blockSeqs : . . . . . . . . T T A . T . . . . . . . . . . . . . . G A
blockSeqs : . . A . C . . . . . . . . . . . . . . . . C T
blockSeqs : . . . . . . . C T
blockSeqs : T A
blockSeqCons : ** ************
originalCons : CGTAGAAATT-------TATGAAAATCACTGTATGAAATGTGAAACCCAAAATAGCATCATGACT-T-TT--T-CTGTTTTAGATACTTTATCTTTTGTTACATGGGTGACAACAATA-TTTTGTTGAAATATATCACTTTNTT-AGTAAATNAAACANGATTTATAACTTACACCCNTTTGCTGTTTTTTCTTT-T----AAAAAATGTAAA-ACGGTGTAGTTT-AAAAATA-GTCGTAGC------------AAAA-A-----A---AC--AAGCATGGTGACCTATATTTTTTTCTAG-TGTTTTAAACTTGTCTTACTTCAAAGTACTTGTGTGCAAAA--TTT-AAAA-AAAATCTCCGCGCTAGAAGTNACTCGAAGAAACGTC
finalCons : CGTAGAAATT-------TATGAAAATCACTGTATGAAATGTGAAACCCAAAATAGCATCATGACT-T-TT--T-CTGTTTTAGATACTTTATCTTTTGTTACATGGGTGACAACAATA-TTTTGTTGAAATATATCACTTTNTT-AGTAAATNAAACANGATTTATAACTTACACCCNTTTGCTGTTTTTTCTTT-T----AAAAAATGTAAA-ACGGTGTAGTTT-AAAAATA-GTCGTAGC------------AAAA-A-----A---AC--AAGCATGGTGACCTATATTTTTTTCTAG-TGTTTTAAACTTGTCTTACTTCAAAGTACTTGTGTGCAAAA--TTT-AAAA-AAAATCTCCGCGCTAGAAGTNACTCGAAGAAACGTC
Alignments
lowQualScore : 1 111111111111
lowQualScore : 0 8888888 1 3 1 3 66 3 1 2 1 2 2 1 0 666666 1 6 1 444444444444 1 33333 222 44 1 2 1 0 33 6 1 1 1
lowQualScore : . ....... . . . . .. . . . . . . . . ...... . . . ............ . ..... ... .. . . . . .. . . . .
lowQualScore : 7 7777777 1 6 7 3 99 3 6 6 6 6 6 0 4 444444 6 4 6 888888888888 5 88888 777 22 4 5 6 4 77 2 5 1 0
consensus : CGTAGAAATT-------TATGAAAATCACTGTATGAAATGTGAAACCCAAAATAGCATCATGACT-T-TT--T-CTGTTTTAGATACTTTATCTTTTGTTACATGGGTGACAACAATA-TTTTGTTGAAATATATCACTTTNTT-AGTAAATNAAACANGATTTATAACTTACACCCNTTTGCTGTTTTTTCTTT-T----AAAAAATGTAAA-ACGGTGTAGTTT-AAAAATA-GTCGTAGC------------AAAA-A-----A---AC--AAGCATGGTGACCTATATTTTTTTCTAG-TGTTTTAAACTTGTCTTACTTCAAAGTACTTGTGTGCAAAA--TTT-AAAA-AAAATCTCCGCGCTAGAAGTNACTCGAAGAAACGTC
Reference ( family-5015 ) : CGTAGAAATT-------TATGAAAATCACTGTATGAAATGTGAAACCCAAAATAGCATCATGACT-T-TT--T-CTGTTTTAGATACTTTATCTTTTGTTACATGGGTGACAACAATA-TTTTGTTGAAATATATCACTTTNTT-AGTAAATNAAACANGATTTATAACTTACACCCNTTTGCTGTTTTTTCTTT-T----AAAAAATGTAAA-ACGGTGTAGTTT-AAAAATA-GTCGTAGC------------AAAA-A-----A---AC--AAGCATGGTGACCTATATTTTTTTCTAG-TGTTTTAAACTTGTCTTACTTCAAAGTACTTGTGTGCAAAA--TTT-AAAA-AAAATCTCCGCGCTAGAAGTNACTCGAAGAAACGTC
gi|1 : CGTAGCAATT-------TATGAAAATT-TTGTATGAATAATCAAACCCAAAATAGCATCATGATT-T-TTTTT-CTGTTTTAGATACTTTATCCTTTGTTACATGGGTGACAACAATA-TTTTGTTGAAATATATCACTTTTTC-AGTAAAT-AAACATGATTTATAACTTGCATCTCTTTGCTGTCTTTTCTTT-A----AAAAAATATAAA-ACAGTGTAGTTA-AAAATTA-GTCGTAGCAAAAATAACATAAAAA-A-----A---AC--AAGCATGATAACCTATTTTTTTTTCAAG-TGTTTTAAACTTGTCTTACTTCAAAGTACTTGTGCGC---------------AAAATCTCCGCGCTAGAAGTAACTTAAAGAAATGTC
gi|10 : tGTAGCAATC-------CATAAAAA-CACTGAATGAAAGGTGAAACCCTAAATAGCTTCATGATTAT-TT--T-CTGTTTCTGATACTTTATCTTTTGTTACATGGATGACAACAATA-TTTTGTTGAAATATATGACTTCTTT-AGTAAATAAAGCATGATTCATAACT------CATTTACTGTCTTTTC-TT-T----AAAAAATGAAAA-ACTGTGTAGCTTAAAAAACA-GTCGTAGCAAAA--------AAAA-A-----A---AC--AAGCATGTTGATCTATATTTTAGTCTAG-TGTTTTAAACTCG---------AAAA-ACTTGTGGGTAAAA--TTA-AAAA-AAAATCTCTTCGCGAGAAGTAACATGAAGAAATGT
gi|11 : tCGTAGCAATT-------TATGAAAATCATTGTATAAAAGTTGAAACCCAAAATAGCATCAT-ATT-T-TTTTT-CTGTTTTAGATACTTTATCTTCTGTTACATGAATGACAACAATATTTTTGTTGAAATATATCACTTTTTT-AGGAAATAAAACGTGATTCATAACTTGCATCCCTCTGCAG-TATTTCTTT-A----AAAAAATGTAAA-AAGGTATTGTTT-AAAATAA-GTCATAGC------------AAAA-AAAAACA---AC--AAGCATGGCGACCTATAC-------------------ACTTGTCTTACTTCAAAGTACTTGTGTGCAAAA--TTT-AAAA-AAAAT---CGCGCTAGAAGTTTCTCAAAGAAATGTC
gi|12 : tGCATGAATTGTGAAACTCAAAATAGCATCATGACT-T-TT--T-CTGTTTTAGATACTTTAGCTTTTGTTACATGAGTGACAACAATA-TTTTGTTGAAATATATCACTTTGTT-AGTAAATCAAACAAGATTTATAACTTACACCCATTTGCTGTTTTTTTTTC-TTTAAAAAAAAAGTAAA-ACGGCGTAGTTT-AAAAATA-GTCATAGC------------AAAA-A-----C---AC--AAGCATGGTGACCTATATTTGTTT-TAG-TGTTTTAAACTTGTCTTACTTCAAAGTACTTGTGTGCAAAA--TTT-AAAA-AAAATCTCCGCGCTAGAACTTACTCGAAGAAACGT
gi|13 : ATTGTATGAAAGGTGAAACCCAAAATAGCATCATGA-T-T-TT--T-CTGCTTTAGATACTTTATCTTTTGTGACATGGATGACAACAATA-TTTTGTTAAAATATATCACTCTTTT-AGTAAATAAAACATAATTTATAACTTTCACACCTTTGCTGTCTTTTCTTT-A----AAAAAATGTAAA-ACGGTGTAGTTT--AAAATAGGTCGTACCA-----------AAAA-A-----A---AC--AAGCATGGTGACCTG-AATTTTTTCAAG-TGTTTTAAACTTGTCTTACTTCAAAGTCCTTGTGTGCAAAA--TTTAAAAA-AAAATCTCCGCGCTAGAAGTAACTCGAAGAAA
gi|14 : CGTAGAAATTCATGATGTATGAAAATCAGTGTATGAAATGTGAAACTCAAAATAGCATCATGACT-T-TT--T-CTGTTTTAGATACTTTATCTTTTGTTACATGATTGACAACAATA-TTTTGTTGAAATATATCACTTTGTT-AGTAAATTAATCAAGATTTATAACTTACACCCATTTGCTGTTTTTTC-TT-T----AAAAAATGTAAA-ACGGTGTAATTT-AAAAATA-GT--TA----------------------------------------------TATCTTTTTT--TAG-TGTTTTAAACTAGTCTTACTTCAAAGTACTTTTGTGCAAAA--TTT-AAAA-AAAATCTCCGCGCTAGAACTTACTCGAAGAAA
gi|15 : AACCCCAAATAGCATCATAATT-T-TT--T-CTGTTTTAGATACTTTATCTTTTGTTACATGGATTACAACAATA-TTTGGTTGAAATATATCACTTTTTTTAGTAAATAAAACATGATTTATAACTTGCACCCCTTTGCTGTCTTTTCTTT-A----AAAAAATGTAAA-ACGGTGTAGTTT-AAAATTA-GTCGTAGC------------AAAA-A-----A---AC--AAGCATGGTCACTTATATTTTTTTCTAG-TGTTTTAAACTTGTCTTACTTCAAAGTACTTGTGTGCAAAA--TTTAAAAA-AAAATCTCCGCGCTAGAAGTAACTCGAAGAAACGTC
gi|16 : AACACAAAATAGCATCATGATT-T-TT--TTCTAATTTAGATACTTTATCATTTGTTTCATGAATGACAAAAATA-TTTTGTTGAAATATTTCACTCTTTT-AGTAAATAAAACATGATTTATAACTTGCACCCCTTTGCTGTATTTTC-TT-T----AAAAAATGTAAA-ACGGTGTAGTTT-AAAATTA-GTCGTAGCG-----------AAAA-A-----A---AC--AAACAAGGTGACCTATATTTTTTGCTAG-TGTTTTAAACTTATCTTACTTCAAAGTACTTGTGTGCAAAA--TTT-AAAA-AAAATCTCCGCGCTAGAAGTAACTCGAAGTAATGTC
gi|17 : TGAAACCTAAAATAGCATCATGA-T-T-TT--T-CTGTTTGAGATACTTTATCTTTTGTTACATGGATGACAACAATA-TTTTGTTGAAATATATCACTTCTTA-AGTAAATAAAACATGATTTATATCTTACATACCTTTTCTTTTTTTTTCTT-T----AAAAAATG-AAA-ACTGTGTAGCTTAAAAAATA-GTCG-AAT------------AAAA-A-----A---ATAAAAGCATGGTGAACTATA--TTTTTCTAG-TGTTTTCAACTTGTCTTACTTCAAAGTACGTGTGTGC--AC--TTT-TTAA-ACAATCTCCGCACTAGAAGTAACTCTAAGAAATGTC
gi|18 : TGAAACCTAAAATAGCATCATGA-T-T-TT--T-CTGTTTGAGATACTTTATCTTTTGTTACATGGATGACAACAATA-TTTTGTTGAAATATATCACTTCTTA-AGTAAATAAAACATGATTTATATCTTACATACCTTTTCTTTTTTTTTCTT-T----AAAAAATG-AAA-ACTGTGTAGCTTAAAAAATA-GTCG-AAT------------AAAA-A-----A---ATAAAAGCATGGTGAACTATA--TTTTTCTAG-TGTTTTCAACTTGTCTTACTTCAAAGTACGTGTGTGC--AC--TTT-TTAA-ACAATCTCCGCACTAGAAGTAACTCTAAGAAATGT
gi|19 : CGTAGCAATT-------TATGAAAATCACTTTATGAAA-------------A-AGCATCAT-ATT-TGTT--T-ATGTTTTAGATATTGTATCTTTTGTTACATGGATGATAACAATA-TTTTGTTCATATATATCCCTTCCTT-AGTAAATAAAATA----TTATATCTTACACCTCATTGCAGTTTTTTCTTT-A----AGAAAAT-TAGATACGGTGTAGTTA-AAAAATA-GTCGTAGC------------AAAATA-----A---AC--AAGCATGGTGACCAATATGTTT---TAGTTCTTTTAAACTTGT----------------------CAAAA--TTT--TAG-AAATTCCTCGTGCTAGAAGTAACTCGAAGAAA
gi|2 : CGTAGAAATT-------TATGAAAATTACTGTATAAAATGTGAAACTCAAAAGAGCATCATGACT-T-TT--T-CTGTTTTAGATACTTTATCTTTTGTTACATGAGTGACAACAATA-TTTTGTTGAAATATATCACTTTGTT-AGTAAATTAAACAAGATTTATAACTTACACCAATTTGCTGTTTTTTTCTT-T----AAAAAATGTAAA-ACTGTGTAGTTT-AAAAATA-GTCATAGC------------AAAA-A-----A---AC--AAGCATGGGGACCTATATTTTTTTTTAG-TGTTTTAAACTTGTCTTACTTCAAAGTACTTGTGTGCAAAA--TTT-AAAA-AAAATCTCCGCGCTACAACTTACTCGAAGAAACGTCttc
gi|20 : AAACCCAAAATAACATCATGATT-T-TT--T-CTGTTTTAGATACTTTATCTTTTGTTACATGGATAACAACAATA-TTTTGTTGAAATATATCACTCTTAT-AGTCAATAAAACATGATTTATAACTTGCACCCCTTTGATGTCTTTTCTTT-TA---AAAAAATGTAAA-ACGGTGTAGTTT-AAGATTA-GTTGTAGC------------AAAA-C-----A---AC--AAGCATGGTGA-TTATA-TCTTTTCTAG-TTTTTTAAATTTGTCTTAATTCAAAGCATTTGTGTGCAAAA--T----------AATCT---TGTTAGAAGTAACTCGAAGA
gi|21 : CATCATGATT-T-TT--TTCTGTTTCAGATACTTTATCTT--------------------------TCGTTGAAATACATCACTTT-TA-AGTAAATAAAACATGTTTTATAACTTGCACCCTTTTGCTGTCTTTTCTTT-T----AAAAAATGTAAA-ACGGTGTATTTT-TAAATAA-ATCGTAGA------------AAAA-A-----A---AC--AAGCATGGTGACCTATATTTTTTTCTAG-TGTTTTAAACTTGTCTTACTTCAAAGTGCTTGAGTGAAAAA--TTTAAAAA-AAAATCTCCGCGCCAGAAGTTTCTCGAAGAAATGTCcatg
gi|22 : GTGACAACAATA-TTTTGTTGAAATATATCACTATGTT-AGTAAATTAAACAAGATTTATAACTTACACCCATTTGCTGTTTTTTC-TT-T----AAAAAATGTAAA-ACCGCATAGTTTAAAAAATA-GTCATAGC------------AAAA-A-----A---AC--AAGCATGGGGACCTATATTTTTTTTTAG-TGTTTTAAACTTGTCTTATTTCAAAGTACTTGTGTGCAAAA--TTT-AAAA-AAAATCTCCGCGCTAGAACTTATTCGAAGAAACGTC
gi|23 : aGACAATAATA-TTTTGTTGAAATATAGCACTCTTTT-AGTACATAAAACATGATTTATAACTTTCACCCCTTTGCTGTCTTTTCTTT-A----AAAAAATGTTAA-ACGGTGTAGTTT-AAAATTA-GTCGTAGC------------AAAA-A-----A---AC--AAGCATGGTGACCTATA-TTTTATCTTG-TGTTTTAAACTTGTCTTACTTCAAAGTCCTTGTGTGCAAAAT-TTT-AAAA-AAATTCTCAGCGCTAAAAGTAACTCTAGGAAATGT
gi|24 : CGTAGAAATT-------TATGAAAATTACTGTATGAAATGTGAAACTCAAAAGAGCATCATGACT-T-TT--T-CTATTTTAGATACTTTATCTTTTGTGACAGGAGTGACAACAATA-TTTTGTTGAAATATATCACTTTGTT-AGTAAATTAAACAAGATTTATAAATTACACCAATTTGCTGTTTTTTC-TT-T----AAATAATGTCAA-ACGGTGTAGTTT-AAAAATA-GTCATAGC------------AAAA-A-----A---AC--AAGCATGGGGACC
gi|25 : atTT-GGTAAATTAAACAAGATTTATAACTTACACCCATTTGCTGTTTTTTCTTT------AAAAAATGTAAA-ACGGTGTAGTTT-AAAAATA-GTCATAGC------------AAAA-A-----A---AC--AAGCAAGGCGACCTATATTTTTTTTTAG-TGTTTTAAACTTGTCTTACTTCAAAGTGCTTGTGTGCAAAA--TTT-AAGA-AAAATCTCCGTGCCAGAACTTACTCAAAGAAACGTC
gi|26 : tgtCGTAGAAATT-------TATGAAAATTACTGTATGAAATGTAAAACTCAAAAGAGCATCATCACT-T-TT--T-CTGTTTTAGATACTTTATCTTTTGTTACATGAGTGACAACAATA-TTTT-T---AATATAT
gi|27 : at-A-----A---AC--AAGCATGGTGATCTATATTTTTT-CTAG-TGTTTTAAACTTGTCTTACGTCAAAGTAA--ATGTGCAAAA--TTT-AAAAAAAAATCTCCGCGCTAGAAGTAACTCGAAGAAATGTC
gi|28 : TGTCTTACTTCAAAGTAA--GTGTGCAAACTTTTT-AAAA-AAAATCTCCGCGCTAGAAGTAACTTGAATAAA
gi|29 : GAAACCTCAAATAGCATCATGATT-T-TT--T-CTGTTTTAGATAt
gi|3 : aaCGTAGAAATT-------TATGAAAATCACTGTATGAAATGTGAAACTCACAATAGCATCATGACT-T-TT--T-CTGTTTGAGATACTTTATCTTTTGTTACATGAGTGACAACAACA-TTTTGTTGAAATATATCACTTTGTT-AATAAATTAAACAAGATTTATATCTTACACCCATTTGCTGTTTTTTCTTC-C----AAAAAATGTAAA-ACGGTGTAGTTT-AGAAATA-GTCATAGC------------AAAA-A-----A---AC--AAGCATGGTGACCTATATTTTTTTTTAG-TGTTTTAAACTTGTCTTACTTCAAAGTACTTGTGTGCAAAA--TTT-AAAA-AAAATCTCCGTGCTAGAACTTACTCGAAGAAACGTC
gi|30 : ATCTCCGCGCTAGAACTTACTCGAAGAATCGTC
gi|4 : CGTAGAAATT-------TATGAAAATTACCGTATGAAATGTGAAACTCAAAAGAGCATCATGACT-T-TT--T-CTGTTTTAGATGCTTTATCTTTTGTTACATGAGTGACAACAATA-CTTTGTTGAAATATATCACTTTGTT-AATAAATTAAACAAGATTTATAACTTACACCAATTTGCTGTTTTTTC-TT-T----AAAAAATGTTAA-ACGGTGTAGTTT-AAAAATA-GTCATAGC------------AAAA-A-----A---AC--AAGCATGGGGACCTATATTATTTTTTAG-TGTTTTAAACTTGTCTTACTTCAAAGTACATGTGTGCAAAA--TTT--AAA-AAAATCTTCGGGCTAGAACTTACTCGAAGAAACGTCt
gi|5 : atCGTAGAAATT-------TATGAAAATTACTGTATGAAATGTGAAACTCAAAAGAGCATCATGACA-T-TT--T-CTGTTTTAGATACTTTATCTTTTGTTACATGAGTGACAACAATA-TTCTGTTGAAATATATCACTTTGTT-AGTAAATTAAACACGATTTATAACTTACACCAATTTGCTGTTTTTTC-TT-T----AAAAAATGTAAA-ACAGTGTAGTTT-AAAAATA-GTCATAGC------------CAAA-A-----A---AC--AAGCATGGGGACCTATATATTTT--TAG-TGTTTTAAACTTGTCGTACTTCAAAGTACTTGTGTGCAAAA--TTT-AAAA-AAAATCTCCGCGCTAGAACTTACTCGGAGAAACGT
gi|6 : atTAGCAATT-------TATGAAAATCATTGTATGAAAGGTGAAACCCAAAACAGCATCATGATT-TGTT--T-CTGTTTTAGATACTTTATCTTTTGTTTCATGGATGACAACAATA-TTTTGTTGAAATATATCACTCTTTT-AGTAAATAAAACAAGATTTATAACTTGCACTCCTTTGCTGTCTTTTCTTTAT----AAAAAA-ATAAA-ATGGTGTTGTTT-AAAATTA-GTCGTAGC-------------AAA-A-----A---AC--AAGCATGGTTACCTATATTGTTTTTTAG-TGTTTTAAACTTGTCTTACTTCAAAGTAA--GTGTGCAAAA--TTTAAAAA-AAAATCTCTGCGCTAGAAGTAACTCGAAGAAATATC
gi|7 : aCGTAGAAATG-------TATGAAAATTACTGTATGAAATGTGAAACTCAAAATAGCATCATGACT-T-TT--T-CTGTTTTAGATACTTTATCTTTTGTTACATGAGTGACAACAATA-TTTTGTTGCAATATATCACTTTGTT-AGTAAATTAAACAAGATTTATAACTTACACCCATTTTCTGTTTTTTC-TT-T----AAAATAAGTAAA-ACGGTGTAGTTT-AAAAATA-GTCATAGC------------AAAA-A-----A---AC--AAGCATGGGGACCTATATTATTTTTTAG-TGTTTTAAACTTGTCTTACTTCAAAGTACTTGTGTGCAAAA--TTT-AAAA-AAAATCTCTGCGCTAGAACTTACTCGAAGAAACG
gi|8 : GTAAACATT-------TATGAAAATCACTGTATGAAATGTGAAACTCAAAATAGCATCATGACT-T-TT--T-CTGTTTTAGATACTGTATCTTTTGTAACATGAGTGACAACAATA-TTTTGTTGAAATATATCACTTTGTT-AGTAAATTAAACAAGATTTATAACTTACACCCATTTGCTGTTTTTTTTTT-T----AAAAAATGTAAA-ACGGTGTAGTTT-TAAAATA-GTCATAGC------------AAAA-A-----A---AC--AAGCATGGTGACCTATAGTTTTTT-TAG-TGTTTTGAACTGGTCGTACTTTAAAGTACTTGTGTGCAAAA--TTT-AAAA-AAAATCTCTGCGCTAGAACTTACTCCAAGAAACGT
gi|9 : CGTAATAATT-------TATGAAAATCACTGTATGAAATGTGAAACTCAAACTTACATCAT-ATT-T-TTTTT-CTGTTTAAGATACTTTATCTTTTGTTACATGGATGACAACAATA-TTTTGTTGAAATATATCACTTTGTT-AGTAAATAAAACATAATTTAAAACTTACACACCTTTGCTGTTTTTTC-TT-T----AAAAAATGTAAA-AAGGTGTAGTTT-AAAAAAA-GTCATAGC------------AAAA-A-----AAACAC--AAACATGGTGACCTATATTTTTTTCGAG-TGTTTTAAACTTGTCTTACTTTAAAGTACTTGTGTGCAAAT--TTT-AAAA-AAAATCACCGCGCTAGAATTAACTCG