lowQualScore : 1 6 8 33333 3 55555 1 3 3
lowQualScore : . . . ..... . ..... . . .
lowQualScore : 7 9 9 88888 1 44444 5 3 0
consensus : GCCTGGGGC-TTGCCCCAAAGGCCATA-----GT-ACC-----AA-TGCTGGATTTCTGACGANCTC
Reference ( gi|21 ) : GCCTGGGGC-TTACCCCAAAGGTCATA-----GT-ACC-----AA-TGCTGGATTTCTGATAAACTC
gi|12 : GCCTGGAAC-TTGCCCGAAAGGCCATA-----GT-ACA-----AA-TGTTGGATTTCTGAAGAGCTC
gi|7 : GCCTGGGAC-TTGCCCCAAAGGCTGTA-----GT-ACC-----AA-TACTGGATTAATGACGATCTCcacttt
gi|6 : gGCATGGGGC-TTGCCCCAAAGGCCGTA-----AG-ACC-----AA-TATTGGATTTCTGAcgcttt
gi|25 : gGCCTGGG-C-TAGCCCCAAAGGACATA-----GC-ACC-----AA-TGTTGGATTTTTcgcaatccccttt
gi|11 : gGCCTGAGGC-TTGCTCTAAATGCCATT-----GT-GCC-----AA-TGCTGCATTTCTGA
gi|24 : tgGCCTAAGGC-TAGCCCCAAAGGGCAAA-----GT-ACC-----AA-TGCCGGATTTcgatatccact
gi|13 : ttcaGTCTGGGAC-TTGCCCCAAAGA-CATA-----GA-AGC-----AA-TGTTGGATTTCTAA
gi|8 : ttgGTCTTGGAC-TTTCCCCAAATGCCATA-----AT-ACTAAATAAA-TGCTGGATTACTGATGAAagctatccac
gi|14 : tttgGCCTAGGTC-CTTCCCCAA-TGTCACA-----AT-AGC-----AA-TGCTGGATTTCTGGT
gi|5 : ttgGCCTGGGGC-TTGCTCCAAATTGCATT-----GT-AGC-----GA-TGCCATATTTCTAATgccatccac
gi|3 : ttgtGCCTGGGGC-TTGCTCCAAATTGCATT-----GT-AGC-----GA-TGCCATATTTCTAATgctatccact
gi|4 : tttgtGCCTGGGGC-TTGCTCCAAGTG-CATT-----GT-AGC-----GA-TGCCATATTTCTTATgctatccact
gi|9 : tttgtCCTGGGAC-TTGCCACAAAGGCTGTA-----GT-ACC-----AA-TACTGGATTTATGAgctatccactt
gi|18 : CCAGGGGC-TTGTCCAAAATGCCATA-----GC-ACC-----AA-TGCTGGGTTTCTGGCAAcgatatccactttt
gi|15 : gaCTTGGGC-TTGCCCCAAATGCGATA-----GT-ACC-----AA-TGTTGGATTTCTtacca
gi|16 : CTGGAGC-TTGCCCAAAAGTCCA-A-----GT-ACC-----AA-TGCTGGATtacgtatccacgtt
gi|10 : TAGGGC-TTGTCCTAAAGGTCATA-----GT-ACC-----AA-TGCTGGATTTCTAATGAAATCgctgacgatatttactttt
gi|1 : ttTGGGGT-TTGCCCCAAAGGTCATAGTACTGT-ACC-----AG-TGTTGGATTTCTGACGAACTCtgctgtt
gi|19 : GAGGC-TTGCCTTAAAGGTCATA-----AT-ACTA----AA-TGCTGAATTTCAGACGATCTCcactttt
gi|17 : GAGC-TTGTCCCAAAGGCCATA-----GTTACT-----AA-TGCTGGATTTCTGACGAGTTCtattt
gi|2 : GGCATTGCCATAAAGGCCACG-----GT-ACC-----AAATGCTGGATTCCTGAtacttt
gi|27 : tgtttcGGC-TTGCCACCAAGG-CATA-----GT-ACC-----AA-TGCTCAATTTccatatctactttt
gi|20 : GGC-TTGCCAAGATGGCCGTG-----GT-ACC-----AA-TGTTGGATTCATGA
gi|22 : tcta-TTGCCCCAAATGAGATA-----GTTATT-----AA-TGCTGGATTTTGGACGGACTCctccaccgttg
gi|23 : CCAAAGGTCATA-----GT-ACC-----AA-TGCTGGATTGCTAACAATCTCcactttt
gi|26 : cttttAAAGGCCATA-----GT-ACC-----AA-TGCTGGATTTCTAATGAaactttt
Alignments
lowQualScore : 1 3 33333 66666 33
lowQualScore : . . ..... ..... ..
lowQualScore : 6 0 77777 77777 77
consensus : GCCTGGGGC-TTGCCCCAAAGGCCATAGT-AC-----C-----AATGCTGGATTTCTGACGA-NCTC
Reference ( family-4943 ) : GCCTGGGGC-TTGCCCCAAAGGCCATAGT-AC-----C-----AATGCTGGATTTCTGACGA-NCTC
gi|1 : TGGGGT-TTGCCCCAAAGGTCATAGT-ACTGTACC-----AGTGTTGGATTTCTGACGA-ACTC
gi|10 : TAGGGC-TTGTCCTAAAGGTCATAGT-AC-----C-----AATGCTGGATTTCTAATGA-AATCcactttt
gi|11 : ttGCCTGAGGC-TTGCTCTAAATGCCATTGT-GC-----C-----AATGCTGCATTTCTGACGA-TATCtgctgtt
gi|12 : tgGCCTGGAAC-TTGCCCGAAAGGCCATAGT-AC-----A-----AATGTTGGATTTCTGAAGA-GCTCcact
gi|13 : GTCTGGGAC-TTGCCCCAAAGAC-ATAGA-AG-----C-----AATGTTGGATTTCTAAcacttt
gi|14 : ttgGCCTAGGTC-CTTCCCCAA-TGTCACAAT-AG-----C-----AATGCTGGATTTCTGagctatccac
gi|15 : ttgCTTGGGC-TTGCCCCAAATGCGATAGT-AC-----C-----AATGTTGGATTTCTTACGgtgccatccac
gi|16 : CTGGAGC-TTGCCCAAAAGTCCA-AGT-AC-----C-----AATGCTGGA-TGCTGACGA-tatccacgtt
gi|17 : GAGC-TTGTCCCAAAGGCCATAGTTAC-----T-----AATGCTGGATTTCTGACGA-GTTCtatttactttt
gi|18 : CCAGGGGC-TTGTCCAAAATGCCATAGC-AC-----C-----AATGCTGGGTTTCTGGCAA-tacttt
gi|19 : gaGAGGC-TTGCCTTAAAGGTCATAAT-AC-----TA----AATGCTGAATTTCAGACGA-TCTCtacca
gi|2 : GGCATTGCCATAAAGGCCACGGT-AC-----CA----AATGCTGGATTCCTGACtattt
gi|20 : tgtttcGGC-TTGCCAAGATGGCCGTGGT-AC-----C-----AATGTTGGATTCATGACcatatctactttt
gi|21 : tctaGCCTGGGGC-TTACCCCAAAGGTCATAGT-AC-----C-----AATGCTGGATTTCTGATAA-ACTCtccaccgttg
gi|22 : -TTGCCCCAAATGAGATAGTTAT-----T-----AATGCTGGATTTTGGACGG-ACTC
gi|23 : CCAAAGGTCATAGT-AC-----C-----AATGCTGGATTGCTAACAA-TCTCcactttt
gi|24 : cttttGCCTAAGGC-TAGCCCCAAAGGGCAAAGT-AC-----C-----AATGCCGGATTTaactttt
gi|25 : ttcaGCCTGGG-C-TAGCCCCAAAGGACATAGC-AC-----C-----AATGTTGGATTTTT
gi|26 : gAAAGGCCATAGT-AC-----C-----AATGCTGGATTTCTAATGATGCTC
gi|27 : GGC-TTGCCACCAAGGC-ATAGT-AC-----C-----AATGCTCAATTTacttt
gi|3 : GCCTGGGGC-TTGCTCCAAATTGCATTGT-AG-----C-----GATGCCATATTTCTAATG
gi|4 : tttgtGCCTGGGGC-TTGCTCCAAGTG-CATTGT-AG-----C-----GATGCCATATTTCTctatccact
gi|5 : tttgtGCCTGGGGC-TTGCTCCAAATTGCATTGT-AG-----C-----GATGCCATATTTCTAATGtatgctatccactt
gi|6 : ttgtGCATGGGGC-TTGCCCCAAAGGCCGTAAG-AC-----C-----AATATTGGATTTCTGACGctatccact
gi|7 : gGCCTGGGAC-TTGCCCCAAAGGCTGTAGT-AC-----C-----AATACTGGATTAATGACGA-TCTCcaatccccttt
gi|8 : gGTCTTGGAC-TTTCCCCAAATGCCATAAT-AC-----TAAATAAATGCTGGATTACTGATGA-Acgcttt
gi|9 : tttgCCTGGGAC-TTGCCACAAAGGCTGTAGT-AC-----C-----AATACTGGATTTATGACGA-TATC
Alignments
lowQualScore : 1 3 33333 66666 33
lowQualScore : . . ..... ..... ..
lowQualScore : 6 0 77777 77777 77
consensus : GCCTGGGGC-TTGCCCCAAAGGCCATAGT-AC-----C-----AATGCTGGATTTCTGACGA-NCTC
Reference ( family-4943 ) : GCCTGGGGC-TTGCCCCAAAGGCCATAGT-AC-----C-----AATGCTGGATTTCTGACGA-NCTC
gi|1 : TGGGGT-TTGCCCCAAAGGTCATAGT-ACTGTACC-----AGTGTTGGATTTCTGACGA-ACTC
gi|10 : TAGGGC-TTGTCCTAAAGGTCATAGT-AC-----C-----AATGCTGGATTTCTAATGA-AATCcactttt
gi|11 : ttGCCTGAGGC-TTGCTCTAAATGCCATTGT-GC-----C-----AATGCTGCATTTCTGACGA-TATCtgctgtt
gi|12 : tgGCCTGGAAC-TTGCCCGAAAGGCCATAGT-AC-----A-----AATGTTGGATTTCTGAAGA-GCTCcact
gi|13 : GTCTGGGAC-TTGCCCCAAAGAC-ATAGA-AG-----C-----AATGTTGGATTTCTAAcacttt
gi|14 : ttgGCCTAGGTC-CTTCCCCAA-TGTCACAAT-AG-----C-----AATGCTGGATTTCTGagctatccac
gi|15 : ttgCTTGGGC-TTGCCCCAAATGCGATAGT-AC-----C-----AATGTTGGATTTCTTACGgtgccatccac
gi|16 : CTGGAGC-TTGCCCAAAAGTCCA-AGT-AC-----C-----AATGCTGGA-TGCTGACGA-tatccacgtt
gi|17 : GAGC-TTGTCCCAAAGGCCATAGTTAC-----T-----AATGCTGGATTTCTGACGA-GTTCtatttactttt
gi|18 : CCAGGGGC-TTGTCCAAAATGCCATAGC-AC-----C-----AATGCTGGGTTTCTGGCAA-tacttt
gi|19 : gaGAGGC-TTGCCTTAAAGGTCATAAT-AC-----TA----AATGCTGAATTTCAGACGA-TCTCtacca
gi|2 : GGCATTGCCATAAAGGCCACGGT-AC-----CA----AATGCTGGATTCCTGACtattt
gi|20 : tgtttcGGC-TTGCCAAGATGGCCGTGGT-AC-----C-----AATGTTGGATTCATGACcatatctactttt
gi|21 : tctaGCCTGGGGC-TTACCCCAAAGGTCATAGT-AC-----C-----AATGCTGGATTTCTGATAA-ACTCtccaccgttg
gi|22 : -TTGCCCCAAATGAGATAGTTAT-----T-----AATGCTGGATTTTGGACGG-ACTC
gi|23 : CCAAAGGTCATAGT-AC-----C-----AATGCTGGATTGCTAACAA-TCTCcactttt
gi|24 : cttttGCCTAAGGC-TAGCCCCAAAGGGCAAAGT-AC-----C-----AATGCCGGATTTaactttt
gi|25 : ttcaGCCTGGG-C-TAGCCCCAAAGGACATAGC-AC-----C-----AATGTTGGATTTTT
gi|26 : gAAAGGCCATAGT-AC-----C-----AATGCTGGATTTCTAATGATGCTC
gi|27 : GGC-TTGCCACCAAGGC-ATAGT-AC-----C-----AATGCTCAATTTacttt
gi|3 : GCCTGGGGC-TTGCTCCAAATTGCATTGT-AG-----C-----GATGCCATATTTCTAATG
gi|4 : tttgtGCCTGGGGC-TTGCTCCAAGTG-CATTGT-AG-----C-----GATGCCATATTTCTctatccact
gi|5 : tttgtGCCTGGGGC-TTGCTCCAAATTGCATTGT-AG-----C-----GATGCCATATTTCTAATGtatgctatccactt
gi|6 : ttgtGCATGGGGC-TTGCCCCAAAGGCCGTAAG-AC-----C-----AATATTGGATTTCTGACGctatccact
gi|7 : gGCCTGGGAC-TTGCCCCAAAGGCTGTAGT-AC-----C-----AATACTGGATTAATGACGA-TCTCcaatccccttt
gi|8 : gGTCTTGGAC-TTTCCCCAAATGCCATAAT-AC-----TAAATAAATGCTGGATTACTGATGA-Acgcttt
gi|9 : tttgCCTGGGAC-TTGCCACAAAGGCTGTAGT-AC-----C-----AATACTGGATTTATGACGA-TATC
blockSeqs : A T . AAATA TG
blockSeqs : . T . A A
blockSeqs : . . . A T
blockSeqs : . . . . G
blockSeqs : . . . . G
blockSeqs : . . . . T
blockSeqs : . . . . A
blockSeqs : . . . . A
blockSeqs : . . . . T
blockSeqs : . . . . T
blockSeqs : . . . . A
blockSeqs : . . . . T
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqCons : *****
originalCons : GCCTGGGGC-TTGCCCCAAAGGCCATAGT-AC-----C-----AATGCTGGATTTCTGACGA-NCTC
finalCons : GCCTGGGGC-TTGCCCCAAAGGCCATAGT-AC-----C-----AATGCTGGATTTCTGACGA-NCTC
Alignments
lowQualScore : 1 3 33333 66666 33
lowQualScore : . . ..... ..... ..
lowQualScore : 6 0 77777 77777 77
consensus : GCCTGGGGC-TTGCCCCAAAGGCCATAGT-AC-----C-----AATGCTGGATTTCTGACGA-NCTC
Reference ( family-4943 ) : GCCTGGGGC-TTGCCCCAAAGGCCATAGT-AC-----C-----AATGCTGGATTTCTGACGA-NCTC
gi|1 : TGGGGT-TTGCCCCAAAGGTCATAGT-ACTGTACC-----AGTGTTGGATTTCTGACGA-ACTC
gi|10 : TAGGGC-TTGTCCTAAAGGTCATAGT-AC-----C-----AATGCTGGATTTCTAATGA-AATCcactttt
gi|11 : ttGCCTGAGGC-TTGCTCTAAATGCCATTGT-GC-----C-----AATGCTGCATTTCTGACGA-TATCtgctgtt
gi|12 : tgGCCTGGAAC-TTGCCCGAAAGGCCATAGT-AC-----A-----AATGTTGGATTTCTGAAGA-GCTCcact
gi|13 : GTCTGGGAC-TTGCCCCAAAGAC-ATAGA-AG-----C-----AATGTTGGATTTCTAAcacttt
gi|14 : ttgGCCTAGGTC-CTTCCCCAA-TGTCACAAT-AG-----C-----AATGCTGGATTTCTGagctatccac
gi|15 : ttgCTTGGGC-TTGCCCCAAATGCGATAGT-AC-----C-----AATGTTGGATTTCTTACGgtgccatccac
gi|16 : CTGGAGC-TTGCCCAAAAGTCCA-AGT-AC-----C-----AATGCTGGA-TGCTGACGA-tatccacgtt
gi|17 : GAGC-TTGTCCCAAAGGCCATAGTTAC-----T-----AATGCTGGATTTCTGACGA-GTTCtatttactttt
gi|18 : CCAGGGGC-TTGTCCAAAATGCCATAGC-AC-----C-----AATGCTGGGTTTCTGGCAA-tacttt
gi|19 : gaGAGGC-TTGCCTTAAAGGTCATAAT-AC-----TA----AATGCTGAATTTCAGACGA-TCTCtacca
gi|2 : GGCATTGCCATAAAGGCCACGGT-AC-----CA----AATGCTGGATTCCTGACtattt
gi|20 : tgtttcGGC-TTGCCAAGATGGCCGTGGT-AC-----C-----AATGTTGGATTCATGACcatatctactttt
gi|21 : tctaGCCTGGGGC-TTACCCCAAAGGTCATAGT-AC-----C-----AATGCTGGATTTCTGATAA-ACTCtccaccgttg
gi|22 : -TTGCCCCAAATGAGATAGTTAT-----T-----AATGCTGGATTTTGGACGG-ACTC
gi|23 : CCAAAGGTCATAGT-AC-----C-----AATGCTGGATTGCTAACAA-TCTCcactttt
gi|24 : cttttGCCTAAGGC-TAGCCCCAAAGGGCAAAGT-AC-----C-----AATGCCGGATTTaactttt
gi|25 : ttcaGCCTGGG-C-TAGCCCCAAAGGACATAGC-AC-----C-----AATGTTGGATTTTT
gi|26 : gAAAGGCCATAGT-AC-----C-----AATGCTGGATTTCTAATGATGCTC
gi|27 : GGC-TTGCCACCAAGGC-ATAGT-AC-----C-----AATGCTCAATTTacttt
gi|3 : GCCTGGGGC-TTGCTCCAAATTGCATTGT-AG-----C-----GATGCCATATTTCTAATG
gi|4 : tttgtGCCTGGGGC-TTGCTCCAAGTG-CATTGT-AG-----C-----GATGCCATATTTCTctatccact
gi|5 : tttgtGCCTGGGGC-TTGCTCCAAATTGCATTGT-AG-----C-----GATGCCATATTTCTAATGtatgctatccactt
gi|6 : ttgtGCATGGGGC-TTGCCCCAAAGGCCGTAAG-AC-----C-----AATATTGGATTTCTGACGctatccact
gi|7 : gGCCTGGGAC-TTGCCCCAAAGGCTGTAGT-AC-----C-----AATACTGGATTAATGACGA-TCTCcaatccccttt
gi|8 : gGTCTTGGAC-TTTCCCCAAATGCCATAAT-AC-----TAAATAAATGCTGGATTACTGATGA-Acgcttt
gi|9 : tttgCCTGGGAC-TTGCCACAAAGGCTGTAGT-AC-----C-----AATACTGGATTTATGACGA-TATC