lowQualScore : 11 22 111111111111111111111 11
lowQualScore : 66 2 4444 333 333 5 333 22 2 33 2 2 2 999999 555555555555555555555 2 33 8 2 3 2
lowQualScore : .. . .... ... ... . ... .. . .. . . . ...... ..................... . .. . . . .
lowQualScore : 00 1 5555 777 777 4 777 22 2 11 2 2 2 666666 444444444444444444444 5 44 7 5 5 2
consensus : NTACACGAT-CTTCC-TAAATGTAAGATCTGATGAC----GAC---C---TATTCAAATTC---TTCTTCTAGA-ATAACTGGA-TTTCCA-A-TAT-C-----GCTATTTTTA----------G----------CTA-TTTTTATTTCAACCAATCAGAG-TACTCGTTTCAACAGCCGTTCGGCATAACCT
Reference ( gi|10 ) : TTACACGAT-TTTCC-TAAATGTAAGATCTGATGAC----GAC---C---TATTCAAACTC---TTCTTCTAGT-ATAACTGGA-TTATCA-A-TAT-C-----ACTATTTTTA----------G----------CTA-TTTTCGTTTCAACTAATCAGAG-TACTCGTTTCAACAGCTGTTTGGCATAACCT
gi|3 : TACGCAAT-TTTCC-TAAATGTAAGATCTGATGAC----GAC---C---AATTCAAACAC---TTCTTCTAGA-ATAACTGAA-TTTCCA-A-TAT-C-----GCTATTTTTA----------G----------CTATTTTTCATTTCAACCAATCAGAG-TACTTGTTTCAACAGCTGTTCAGAATAACCT
gi|11 : atgactaccaagTACACGAT-TTTCC-TAAAGGTAAGATCTGATGAC----GAT---C---TATTCAAATTC---TTCT-CTATT-ACAATTAAA-TTTTCA-T-TAT-C-----GCTATTTTTA----------G----------CTA-TTGTTATGTCAACCAATCAGAA-TACTCGTTTTAACAGTCGTTCAGCATAAC
gi|6 : agTACACAAT-CTTCC-CTTATGTAAGATCTGATGAC----GAC---C---TATTCAA---C---TTCTTCTAGA-AAAACTGGA-TT-TCATA-TAT-C-----GCTATTTTTA----------G----------TTA-TTTTTATTTCAACCAATGAGAG-TACTTTTTCCAACAGCCGTTCGGCATAACa
gi|7 : tctgacttaagTACACGAT-CTTCC-TAACTGTAAGATCTGATGAC----GAA---C---TATTAAAATTC---TTCTTCTAGA-ATAACTGCA-TTTCCA-A-TAT-C-----GCCATGTTTA----------G----------CTA-------TTTCAACGAATCAGAG-TACTCAATTTAACAGCCGCTCGGCATAACCT
gi|5 : ctgactaaagTACACGAT-GTTCC-TAAATGTAAGATTTGATGAC----GAC---C---TATTCAAATTT---TTCTTCTAGA-CTAACTGGA-TTTTCA-A-TATACTGGTAGCTATTTTTA----------G----------CTA-TATTTATTTCAACCAGTCAGAG-AACTCGTTTCAACAGC
gi|1 : acaatctaacttaaagTACACGATCTTTCA-TAAATGTAAGATCTGATGGC----GAT---C---CATTCGAATTC---ATCTTCTTGT-TTTATCGGA-TTTCCA-A-TAT-C-----GCTATTTTTA----------GATCCACCAATCTA-TTTTTAGATCAACCAATCAGAG-GACTCGTTTCAACAGCCGTTTGGCTTAACCTc
gi|8 : tctgactaaagTACACTAT-TTTCC-TATATGTAAGATCTGATGAT----GAC---C---TATCAAAACT-----------------AACTGAAATCA-CA-A-TAT-C-----GCTTTTTTTA----------A----------CTA-CTTTTATTTCAACCAATAAGAG-TACTCGTTTCAACAGCCATATGGCATAACCTt
gi|12 : caattggaccaaagTGCATGAT-CTTCC-TAAATGTAAGATCTGATGCT----GAC---C---TATTCAAATTC---TTCTCCTTGA-GTAACTGGA-TTTCCA-G-TAT-C-----GCAAGTTTTA-------------------------------TTTCAATCAATCAGAG-TACT-GTTTCAACAGCCATTCGGCATAATCa
gi|2 : ctgactaaagTACACGAT-CTTCCATAAATGTAAGATCTGATGGC----GAT---C---CATTCGAATTC---ATCTTCTTGT-TTATC-GCA-TTTCCA-A-TAT-C-----GCTATTTTTAAATCCACCGAG----------CTA-TTTTTAGATCCACCAATCAGAG-GACTCGTTTCAACAACCGTTTGGCTTAACCT
gi|4 : actaaagTACACGAT-ATTCA-AATATGTAAGATCTGATGAC----GAC---C---TACTCAAACTC---TTATGCTAGA-CTAACCGGA-TTTCCA-A-TAT-C-----GCTTATTTAA----------A----------CTA-CTTTTATTGCAGCCAAATATAG-TAACCGTTTCAACAGCCGTCCGGCATAAt
gi|19 : tctgactaaagTATACGAT-CTCCC-TAAATATAAGATCTGATGAC----GAC---C---TATTCAAATTC---TTCTTCTAGA-ATAACCGGA-TTTCCA-A-TAT-C-----GATATTTT
gi|20 : aatctgacttaggTACAGGAT-CTTCC-AAAATTTAAGATCTGATGAC----GAC---C---TATTCAAA------TTCTTCAAGA-ATAACTGGA-TTTCCA-A-TAT-T-----GCT-TTTTTA----------G----------CTagt
gi|9 : ctgactaaagTACTCCAC-CTTCC-AAAA-GTAAGATCTGATGAC----GAC---C---TATTTAAGCTC----TCTTTTACTCATAATAGGA-TTTCCA-A-TA--------A--------A----------G----------GTA-TTT--ATTTTAGCCAATCAGAGATG-TCGTTTCAACAtg
gi|21 : aatctaactaaagTACATGAT-CTTCC-TAA-TGTAAGATCTGATGAC----GAT---CTAGTATTCAAATTCTCATTCCTCAAGT-cagacattcggcctatctt
gi|16 : ctgactaaagATACAAT-CTTCC-TAAATGTAAGATCTGATGAT----GAC---C---TATTCAAGTTC---TTCTTCTAGA-ATAAATGGA-TTTCCA-A-TAT-T-----ATTATTTTTA----------G----------CTA-TTTTTACTTCAGCCAATCAGAG-TACTCATTgca
gi|18 : CACGAT-CATTC-TCAATGTACGATAT-ATGAC----GAT---C---TGTTCAAATTA---TTCTTCTAGA-ATAATCGG-----------------------TGTGTTTA----------G----------CTA-TTTTAATTTAAACCAATCAGAG-T
gi|13 : taagctAT-CTTCC-TAAATGTAAGATCTGATGACTGATGACTACC---TGTTCA---TG---TTCTCCTAGA-ATAACTGGA-TT-TCA-GCTAT-C-----ACTATTTTTA----------G----------CAA-TTTTTATTTCAAC----CAGAT-TATTCAGTTCAACAGTCGTTCGGCATAACTT
gi|15 : aCC-TTAATGTAAGATCTAATGGT----GAC---C---TTTTCAGATTC---TTCTTCTAGA-ATACCTGGA-TTTCCA-A-TGT-C-----GCTA-TTTTA----------G----------CTA-TTTTTATTTCACCCATTCAGAG-TACTGGTTTCAACAGCCGTTCTGCATAACCT
gi|14 : -TACATGTAAGATTTGATGAT----GAC---C---TATTTAAATTC---TTCTTCTGGA-ATAACTGGA-TTTCCA-A-TAT-T-----GCTATTGTTA----------G----------CTA-TTTTCATTTCAACCAATCAGAA-CACTTTTTTCAACAGCTGCTCGACAAAACCTtc
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): GATGACGCATTCTCTAATTTATCTTGCTTGTTTGTTGCATTTCAATATCGCTAGTTACCGCTTGAAAGTCACATTGATTGATTTTTATACAATCAAGGCACGCTTGAA
Alignments
lowQualScore : 111111111111111111111
lowQualScore : 4 4444 333 333 1 2 2 55555 0 111111111111111111111 2 2 33
lowQualScore : . .... ... ... . . . ..... . ..................... . . ..
lowQualScore : 0 2222 555 555 3 1 1 33333 1 222222222222222222222 4 5 77
consensus : NTACACGATCTTCC-TAAATGTAAGATCTGATGAC----GAC---C---TATTCAAATTCTTCTTCTA-GAATAACTGGATTTCCAATAT-C-----GCTATTTTTA----------G----------CTATTTTT-ATTTCAACCAATCAGAGTAC-TCGTTTCA--ACAGCCGTTCGGCATAACCT
Reference ( family-4878 ) : NTACACGATCTTCC-TAAATGTAAGATCTGATGAC----GAC---C---TATTCAAATTCTTCTTCTA-GAATAACTGGATTTCCAATAT-C-----GCTATTTTTA----------G----------CTATTTTT-ATTTCAACCAATCAGAGTAC-TCGTTTCA--ACAGCCGTTCGGCATAACCT
gi|1 : TACACGATCTTTCATAAATGTAAGATCTGATGGC----GAT---C---CATTCGAATTCATCTTCTT-GTTTTATCGGATTTCCAATAT-C-----GCTATTTTTA----------GATCCACCAATCTATTTTT-AGATCAACCAATCAGAGGAC-TCGTTTCA--ACAGCCGTTTGGCTTAACCT
gi|10 : tctgactaaagTACACGATTTTCC-TAAATGTAAGATCTGATGAC----GAC---C---TATTCAAACTCTTCTTCTA-GTATAACTGGATTATCAATAT-C-----ACTATTTTTA----------G----------CTATTTTC-GTTTCAACTAATCAGAGTAC-TCGTTTCA--ACAGCTGTTTGGCATAACCTt
gi|11 : tTACACGATTTTCC-TAAAGGTAAGATCTGATGAC----GAT---C---TATTCAAATTCTTCT-CTA-TTACAATTAAATTTTCATTAT-C-----GCTATTTTTA----------G----------CTATTGTT-ATGTCAACCAATCAGAATAC-TCGTTTTA--ACAGTCGTTCAGCATAAC
gi|12 : agTGCATGATCTTCC-TAAATGTAAGATCTGATGCT----GAC---C---TATTCAAATTCTTCTCCTT-GAGTAACTGGATTTCCAGTAT-C-----GC-A-----A----------G--------------TTTT-ATTTCAATCAATCAGAGTAC-T-GTTTCA--ACAGCCATTCGGCATAATCa
gi|13 : ctgactaaagATCTTCC-TAAATGTAAGATCTGATGACTGATGACTACC---TGTTCA---TGTTCTCCTA-GAATAACTGGATTTCAGCTAT-C-----ACTATTTTTA----------G----------CAATTTTT-ATTTCAAC----CAGATTAT-TCAGTTCA--ACAGTCGTTCGGCATAACTT
gi|14 : a-TACATGTAAGATTTGATGAT----GAC---C---TATTTAAATTCTTCTTCTG-GAATAACTGGATTTCCAATAT-T-----GCTATTGTTA----------G----------CTATTTTC-ATTTCAACCAATCAGAACAC-TTTTTTCA--ACAGCTGCTCGACAAAACCT
gi|15 : ctaaagCC-TTAATGTAAGATCTAATGGT----GAC---C---TTTTCAGATTCTTCTTCTA-GAATACCTGGATTTCCAATGT-C-----GCTA-TTTTA----------G----------CTATTTTT-ATTTCACCCATTCAGAGTAC-TGGTTTCA--ACAGCCGTTCTGCATAACCTt
gi|16 : ATACAATCTTCC-TAAATGTAAGATCTGATGAT----GAC---C---TATTCAAGTTCTTCTTCTA-GAATAAATGGATTTCCAATAT-T-----ATTATTTTTA----------G----------CTATTTTT-ACTTCAGCCAATCAGAGTAC-TCATTtc
gi|18 : CACGATCATTC-TCAATGTACGATAT-ATGAC----GAT---C---TGTTCAAATTATTCTTCTA-GAATA--------------AT-C-----GGTGTGTTTA----------G----------CTATTTTA-ATTTAAACCAATCAGAGT
gi|19 : taagctTATACGATCTCCC-TAAATATAAGATCTGATGAC----GAC---C---TATTCAAATTCTTCTTCTA-GAATAACCGGATTTCCAATAT-C-----GATATTTT
gi|2 : aatctgacttaggTACACGATCTTCCATAAATGTAAGATCTGATGGC----GAT---C---CATTCGAATTCATCTTCTT-GTTTATC-GCATTTCCAATAT-C-----GCTATTTTTAAATCCACCGAG----------CTATTTTT-AGATCCACCAATCAGAGGAC-TCGTTTCA--ACAACCGTTTGGCTTAACCTagt
gi|20 : actaaagTACAGGATCTTCC-AAAATTTAAGATCTGATGAC----GAC---C---TATTCAAA---TTCTTCAA-GAATAACTGGATTTCCAATAT-T-----GCT-TTTTTA----------G----------CTt
gi|21 : ctgactaaagTACATGATCTTCC-TAA-TGTAAGATCTGATGAC----GAT---CTAGTATTCAAATTCTCATTCtg
gi|3 : ctgactaaagTACGCAATTTTCC-TAAATGTAAGATCTGATGAC----GAC---C---AATTCAAACACTTCTTCTA-GAATAACTGAATTTCCAATAT-C-----GCTATTTTTA----------G----------CTATTTTTCATTTCAACCAATCAGAGTAC-TTGTTTCA--ACAGCTGTTCAGAATAACCTctcaagtgca
gi|4 : atgactaccaagTACACGATATTCA-AATATGTAAGATCTGATGAC----GAC---C---TACTCAAACTCTTATGCTA-GACTAACCGGATTTCCAATAT-C-----GCTTATTTAA----------A----------CTACTTTT-ATTGCAGCCAAATATAGTAA-CCGTTTCA--ACAGCCGTCCGGCATAA
gi|5 : tctgactaaagTACACGATGTTCC-TAAATGTAAGATTTGATGAC----GAC---C---TATTCAAATTTTTCTTCTA-GACTAACTGGATTTTCAATATACTGGTAGCTATTTTTA----------G----------CTATATTT-ATTTCAACCAGTCAGAGAAC-TCGTTTCA--ACAGCC
gi|6 : acaatctaacttaaagTACACAATCTTCC-CTTATGTAAGATCTGATGAC----GAC---C---TATTCAA---CTTCTTCTA-GAAAAACTGGATTTCATATAT-C-----GCTATTTTTA----------G----------TTATTTTT-ATTTCAACCAATGAGAGTAC-TTTTTCCA--ACAGCCGTTCGGCATAAC
gi|7 : tctgacttaagTACACGATCTTCC-TAACTGTAAGATCTGATGAC----GAA---C---TATTAAAATTCTTCTTCTA-GAATAACTGCATTTCCAATAT-C-----GCCATGTTTA----------G----------C------T-ATTTCAACGAATCAGAGTAC-TCAATTTA--ACAGCCGCTCGGCATAACCT
gi|8 : ctgactaaagTACACTATTTTCC-TATATGTAAGATCTGATGAT----GAC---C---TAT-CAAA-------------ACTAACTGAAATCACAATAT-C-----GCTTTTTTTA----------A----------CTACTTTT-ATTTCAACCAATAAGAGTAC-TCGTTTCA--ACAGCCATATGGCATAACCT
gi|9 : caattggaccaaagTACTCCACCTTCC-AAAA-GTAAGATCTGATGAC----GAC---C---TATTTAAGCTC-TCTTTTACTCATAATAGGATTTCCAATA-----------A-----A----------G----------GTA--TTT-ATTTTAGCCAATCAGAG-ATGTCGTTTCAACACAGACATTCGGCCTAa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GATGACGCATTCTCTAATTTATCTTGCTTGTTTGTTGCATTTCAATATCGCTAGTTACCGCTTGAAAGTCACATTGATTGATTTTTATACAATCAAGGCACGCTTGAA
Alignments
lowQualScore : 111111111111111111111
lowQualScore : 4 4444 333 333 1 2 2 55555 0 111111111111111111111 2 2 33
lowQualScore : . .... ... ... . . . ..... . ..................... . . ..
lowQualScore : 0 2222 555 555 3 1 1 33333 1 222222222222222222222 4 5 77
consensus : NTACACGATCTTCC-TAAATGTAAGATCTGATGAC----GAC---C---TATTCAAATTCTTCTTCTA-GAATAACTGGATTTCCAATAT-C-----GCTATTTTTA----------G----------CTATTTTT-ATTTCAACCAATCAGAGTAC-TCGTTTCA--ACAGCCGTTCGGCATAACCT
Reference ( family-4878 ) : NTACACGATCTTCC-TAAATGTAAGATCTGATGAC----GAC---C---TATTCAAATTCTTCTTCTA-GAATAACTGGATTTCCAATAT-C-----GCTATTTTTA----------G----------CTATTTTT-ATTTCAACCAATCAGAGTAC-TCGTTTCA--ACAGCCGTTCGGCATAACCT
gi|1 : TACACGATCTTTCATAAATGTAAGATCTGATGGC----GAT---C---CATTCGAATTCATCTTCTT-GTTTTATCGGATTTCCAATAT-C-----GCTATTTTTA----------GATCCACCAATCTATTTTT-AGATCAACCAATCAGAGGAC-TCGTTTCA--ACAGCCGTTTGGCTTAACCT
gi|10 : tctgactaaagTACACGATTTTCC-TAAATGTAAGATCTGATGAC----GAC---C---TATTCAAACTCTTCTTCTA-GTATAACTGGATTATCAATAT-C-----ACTATTTTTA----------G----------CTATTTTC-GTTTCAACTAATCAGAGTAC-TCGTTTCA--ACAGCTGTTTGGCATAACCTt
gi|11 : tTACACGATTTTCC-TAAAGGTAAGATCTGATGAC----GAT---C---TATTCAAATTCTTCT-CTA-TTACAATTAAATTTTCATTAT-C-----GCTATTTTTA----------G----------CTATTGTT-ATGTCAACCAATCAGAATAC-TCGTTTTA--ACAGTCGTTCAGCATAAC
gi|12 : agTGCATGATCTTCC-TAAATGTAAGATCTGATGCT----GAC---C---TATTCAAATTCTTCTCCTT-GAGTAACTGGATTTCCAGTAT-C-----GC-A-----A----------G--------------TTTT-ATTTCAATCAATCAGAGTAC-T-GTTTCA--ACAGCCATTCGGCATAATCa
gi|13 : ctgactaaagATCTTCC-TAAATGTAAGATCTGATGACTGATGACTACC---TGTTCA---TGTTCTCCTA-GAATAACTGGATTTCAGCTAT-C-----ACTATTTTTA----------G----------CAATTTTT-ATTTCAAC----CAGATTAT-TCAGTTCA--ACAGTCGTTCGGCATAACTT
gi|14 : a-TACATGTAAGATTTGATGAT----GAC---C---TATTTAAATTCTTCTTCTG-GAATAACTGGATTTCCAATAT-T-----GCTATTGTTA----------G----------CTATTTTC-ATTTCAACCAATCAGAACAC-TTTTTTCA--ACAGCTGCTCGACAAAACCT
gi|15 : ctaaagCC-TTAATGTAAGATCTAATGGT----GAC---C---TTTTCAGATTCTTCTTCTA-GAATACCTGGATTTCCAATGT-C-----GCTA-TTTTA----------G----------CTATTTTT-ATTTCACCCATTCAGAGTAC-TGGTTTCA--ACAGCCGTTCTGCATAACCTt
gi|16 : ATACAATCTTCC-TAAATGTAAGATCTGATGAT----GAC---C---TATTCAAGTTCTTCTTCTA-GAATAAATGGATTTCCAATAT-T-----ATTATTTTTA----------G----------CTATTTTT-ACTTCAGCCAATCAGAGTAC-TCATTtc
gi|18 : CACGATCATTC-TCAATGTACGATAT-ATGAC----GAT---C---TGTTCAAATTATTCTTCTA-GAATA--------------AT-C-----GGTGTGTTTA----------G----------CTATTTTA-ATTTAAACCAATCAGAGT
gi|19 : taagctTATACGATCTCCC-TAAATATAAGATCTGATGAC----GAC---C---TATTCAAATTCTTCTTCTA-GAATAACCGGATTTCCAATAT-C-----GATATTTT
gi|2 : aatctgacttaggTACACGATCTTCCATAAATGTAAGATCTGATGGC----GAT---C---CATTCGAATTCATCTTCTT-GTTTATC-GCATTTCCAATAT-C-----GCTATTTTTAAATCCACCGAG----------CTATTTTT-AGATCCACCAATCAGAGGAC-TCGTTTCA--ACAACCGTTTGGCTTAACCTagt
gi|20 : actaaagTACAGGATCTTCC-AAAATTTAAGATCTGATGAC----GAC---C---TATTCAAA---TTCTTCAA-GAATAACTGGATTTCCAATAT-T-----GCT-TTTTTA----------G----------CTt
gi|21 : ctgactaaagTACATGATCTTCC-TAA-TGTAAGATCTGATGAC----GAT---CTAGTATTCAAATTCTCATTCtg
gi|3 : ctgactaaagTACGCAATTTTCC-TAAATGTAAGATCTGATGAC----GAC---C---AATTCAAACACTTCTTCTA-GAATAACTGAATTTCCAATAT-C-----GCTATTTTTA----------G----------CTATTTTTCATTTCAACCAATCAGAGTAC-TTGTTTCA--ACAGCTGTTCAGAATAACCTctcaagtgca
gi|4 : atgactaccaagTACACGATATTCA-AATATGTAAGATCTGATGAC----GAC---C---TACTCAAACTCTTATGCTA-GACTAACCGGATTTCCAATAT-C-----GCTTATTTAA----------A----------CTACTTTT-ATTGCAGCCAAATATAGTAA-CCGTTTCA--ACAGCCGTCCGGCATAA
gi|5 : tctgactaaagTACACGATGTTCC-TAAATGTAAGATTTGATGAC----GAC---C---TATTCAAATTTTTCTTCTA-GACTAACTGGATTTTCAATATACTGGTAGCTATTTTTA----------G----------CTATATTT-ATTTCAACCAGTCAGAGAAC-TCGTTTCA--ACAGCC
gi|6 : acaatctaacttaaagTACACAATCTTCC-CTTATGTAAGATCTGATGAC----GAC---C---TATTCAA---CTTCTTCTA-GAAAAACTGGATTTCATATAT-C-----GCTATTTTTA----------G----------TTATTTTT-ATTTCAACCAATGAGAGTAC-TTTTTCCA--ACAGCCGTTCGGCATAAC
gi|7 : tctgacttaagTACACGATCTTCC-TAACTGTAAGATCTGATGAC----GAA---C---TATTAAAATTCTTCTTCTA-GAATAACTGCATTTCCAATAT-C-----GCCATGTTTA----------G----------C------T-ATTTCAACGAATCAGAGTAC-TCAATTTA--ACAGCCGCTCGGCATAACCT
gi|8 : ctgactaaagTACACTATTTTCC-TATATGTAAGATCTGATGAT----GAC---C---TAT-CAAA-------------ACTAACTGAAATCACAATAT-C-----GCTTTTTTTA----------A----------CTACTTTT-ATTTCAACCAATAAGAGTAC-TCGTTTCA--ACAGCCATATGGCATAACCT
gi|9 : caattggaccaaagTACTCCACCTTCC-AAAA-GTAAGATCTGATGAC----GAC---C---TATTTAAGCTC-TCTTTTACTCATAATAGGATTTCCAATA-----------A-----A----------G----------GTA--TTT-ATTTTAGCCAATCAGAG-ATGTCGTTTCAACACAGACATTCGGCCTAa
blockSeqs : A TGAT TAC TAG C C A TGGTA AATCCACCGAG C G AC
blockSeqs : . . . . T . . . G . . .
blockSeqs : . . . . T . . . G . . .
blockSeqs : . . . . T . . . G . . .
blockSeqs : . . . . T . . . G . . .
blockSeqs : . . . . T . . . G . . .
blockSeqs : . . . . T . . . G . . .
blockSeqs : . . . . T . . . G . . .
blockSeqs : . . . . T . . . G . . .
blockSeqs : . . . . T . . . G . . .
blockSeqs : . . . . C . . . G . . .
blockSeqs : . . . . C . . . A . . .
blockSeqs : . . . . T . . . G . . .
blockSeqs : . . . . T . . . G . . .
blockSeqs : . . . . C . . . G . .
blockSeqs : . . . . . . . . A .
blockSeqs : . . . . . . . . G
blockSeqs : . . . . . . . .
blockSeqs : . . . . .
blockSeqCons : G********************
originalCons : NTACACGATCTTCC-TAAATGTAAGATCTGATGAC----GAC---C---TATTCAAATTCTTCTTCTA-GAATAACTGGATTTCCAATAT-C-----GCTATTTTTA----------G----------CTATTTTT-ATTTCAACCAATCAGAGTAC-TCGTTTCA--ACAGCCGTTCGGCATAACCT
finalCons : NTACACGATCTTCC-TAAATGTAAGATCTGATGAC----GAC---C---TATTCAAATTCTTCTTCTA-GAATAACTGGATTTCCAATAT-C-----GCTATTTTTAG--------------------CTATTTTT-ATTTCAACCAATCAGAGTAC-TCGTTTCA--ACAGCCGTTCGGCATAACCT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GATGACGCATTCTCTAATTTATCTTGCTTGTTTGTTGCATTTCAATATCGCTAGTTACCGCTTGAAAGTCACATTGATTGATTTTTATACAATCAAGGCACGCTTGAA
Alignments
lowQualScore : 111111111111111111111
lowQualScore : 4 4444 333 333 1 2 2 55555 0 111111111111111111111 2 2 33
lowQualScore : . .... ... ... . . . ..... . ..................... . . ..
lowQualScore : 0 2222 555 555 3 1 1 33333 1 222222222222222222222 4 5 77
consensus : NTACACGATCTTCC-TAAATGTAAGATCTGATGAC----GAC---C---TATTCAAATTCTTCTTCTA-GAATAACTGGATTTCCAATAT-C-----GCTATTTTTA----------G----------CTATTTTT-ATTTCAACCAATCAGAGTAC-TCGTTTCA--ACAGCCGTTCGGCATAACCT
Reference ( family-4878 ) : NTACACGATCTTCC-TAAATGTAAGATCTGATGAC----GAC---C---TATTCAAATTCTTCTTCTA-GAATAACTGGATTTCCAATAT-C-----GCTATTTTTA----------G----------CTATTTTT-ATTTCAACCAATCAGAGTAC-TCGTTTCA--ACAGCCGTTCGGCATAACCT
gi|1 : TACACGATCTTTCATAAATGTAAGATCTGATGGC----GAT---C---CATTCGAATTCATCTTCTT-GTTTTATCGGATTTCCAATAT-C-----GCTATTTTTA----------GATCCACCAATCTATTTTT-AGATCAACCAATCAGAGGAC-TCGTTTCA--ACAGCCGTTTGGCTTAACCT
gi|10 : tctgactaaagTACACGATTTTCC-TAAATGTAAGATCTGATGAC----GAC---C---TATTCAAACTCTTCTTCTA-GTATAACTGGATTATCAATAT-C-----ACTATTTTTA----------G----------CTATTTTC-GTTTCAACTAATCAGAGTAC-TCGTTTCA--ACAGCTGTTTGGCATAACCTt
gi|11 : tTACACGATTTTCC-TAAAGGTAAGATCTGATGAC----GAT---C---TATTCAAATTCTTCT-CTA-TTACAATTAAATTTTCATTAT-C-----GCTATTTTTA----------G----------CTATTGTT-ATGTCAACCAATCAGAATAC-TCGTTTTA--ACAGTCGTTCAGCATAAC
gi|12 : agTGCATGATCTTCC-TAAATGTAAGATCTGATGCT----GAC---C---TATTCAAATTCTTCTCCTT-GAGTAACTGGATTTCCAGTAT-C-----GC-A-----A----------G--------------TTTT-ATTTCAATCAATCAGAGTAC-T-GTTTCA--ACAGCCATTCGGCATAATCa
gi|13 : ctgactaaagATCTTCC-TAAATGTAAGATCTGATGACTGATGACTACC---TGTTCA---TGTTCTCCTA-GAATAACTGGATTTCAGCTAT-C-----ACTATTTTTA----------G----------CAATTTTT-ATTTCAAC----CAGATTAT-TCAGTTCA--ACAGTCGTTCGGCATAACTT
gi|14 : a-TACATGTAAGATTTGATGAT----GAC---C---TATTTAAATTCTTCTTCTG-GAATAACTGGATTTCCAATAT-T-----GCTATTGTTA----------G----------CTATTTTC-ATTTCAACCAATCAGAACAC-TTTTTTCA--ACAGCTGCTCGACAAAACCT
gi|15 : ctaaagCC-TTAATGTAAGATCTAATGGT----GAC---C---TTTTCAGATTCTTCTTCTA-GAATACCTGGATTTCCAATGT-C-----GCTA-TTTTA----------G----------CTATTTTT-ATTTCACCCATTCAGAGTAC-TGGTTTCA--ACAGCCGTTCTGCATAACCTt
gi|16 : ATACAATCTTCC-TAAATGTAAGATCTGATGAT----GAC---C---TATTCAAGTTCTTCTTCTA-GAATAAATGGATTTCCAATAT-T-----ATTATTTTTA----------G----------CTATTTTT-ACTTCAGCCAATCAGAGTAC-TCATTtc
gi|18 : CACGATCATTC-TCAATGTACGATAT-ATGAC----GAT---C---TGTTCAAATTATTCTTCTA-GAATA--------------AT-C-----GGTGTGTTTA----------G----------CTATTTTA-ATTTAAACCAATCAGAGT
gi|19 : taagctTATACGATCTCCC-TAAATATAAGATCTGATGAC----GAC---C---TATTCAAATTCTTCTTCTA-GAATAACCGGATTTCCAATAT-C-----GATATTTT
gi|2 : aatctgacttaggTACACGATCTTCCATAAATGTAAGATCTGATGGC----GAT---C---CATTCGAATTCATCTTCTT-GTTTATC-GCATTTCCAATAT-C-----GCTATTTTTAAATCCACCGAG----------CTATTTTT-AGATCCACCAATCAGAGGAC-TCGTTTCA--ACAACCGTTTGGCTTAACCTagt
gi|20 : actaaagTACAGGATCTTCC-AAAATTTAAGATCTGATGAC----GAC---C---TATTCAAA---TTCTTCAA-GAATAACTGGATTTCCAATAT-T-----GCT-TTTTTA----------G----------CTt
gi|21 : ctgactaaagTACATGATCTTCC-TAA-TGTAAGATCTGATGAC----GAT---CTAGTATTCAAATTCTCATTCtg
gi|3 : ctgactaaagTACGCAATTTTCC-TAAATGTAAGATCTGATGAC----GAC---C---AATTCAAACACTTCTTCTA-GAATAACTGAATTTCCAATAT-C-----GCTATTTTTA----------G----------CTATTTTTCATTTCAACCAATCAGAGTAC-TTGTTTCA--ACAGCTGTTCAGAATAACCTctcaagtgca
gi|4 : atgactaccaagTACACGATATTCA-AATATGTAAGATCTGATGAC----GAC---C---TACTCAAACTCTTATGCTA-GACTAACCGGATTTCCAATAT-C-----GCTTATTTAA----------A----------CTACTTTT-ATTGCAGCCAAATATAGTAA-CCGTTTCA--ACAGCCGTCCGGCATAA
gi|5 : tctgactaaagTACACGATGTTCC-TAAATGTAAGATTTGATGAC----GAC---C---TATTCAAATTTTTCTTCTA-GACTAACTGGATTTTCAATATACTGGTAGCTATTTTTA----------G----------CTATATTT-ATTTCAACCAGTCAGAGAAC-TCGTTTCA--ACAGCC
gi|6 : acaatctaacttaaagTACACAATCTTCC-CTTATGTAAGATCTGATGAC----GAC---C---TATTCAA---CTTCTTCTA-GAAAAACTGGATTTCATATAT-C-----GCTATTTTTA----------G----------TTATTTTT-ATTTCAACCAATGAGAGTAC-TTTTTCCA--ACAGCCGTTCGGCATAAC
gi|7 : tctgacttaagTACACGATCTTCC-TAACTGTAAGATCTGATGAC----GAA---C---TATTAAAATTCTTCTTCTA-GAATAACTGCATTTCCAATAT-C-----GCCATGTTTA----------G----------C------T-ATTTCAACGAATCAGAGTAC-TCAATTTA--ACAGCCGCTCGGCATAACCT
gi|8 : ctgactaaagTACACTATTTTCC-TATATGTAAGATCTGATGAT----GAC---C---TAT-CAAA-------------ACTAACTGAAATCACAATAT-C-----GCTTTTTTTA----------A----------CTACTTTT-ATTTCAACCAATAAGAGTAC-TCGTTTCA--ACAGCCATATGGCATAACCT
gi|9 : caattggaccaaagTACTCCACCTTCC-AAAA-GTAAGATCTGATGAC----GAC---C---TATTTAAGCTC-TCTTTTACTCATAATAGGATTTCCAATA-----------A-----A----------G----------GTA--TTT-ATTTTAGCCAATCAGAG-ATGTCGTTTCAACACAGACATTCGGCCTAa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GATGACGCATTCTCTAATTTATCTTGCTTGTTTGTTGCATTTCAATATCGCTAGTTACCGCTTGAAAGTCACATTGATTGATTTTTATACAATCAAGGCACGCTTGAA