lowQualScore : 111111
lowQualScore : 1111111 22222222 1111111111 22 11 1 1 1 1 4444444444444444 111 1 111111 11111111111111 55555555555555555555555555555555555555555555555555555555555555 1 3333333 44444 1 1 1111 55555555555555555555555555555 111111111 1111111 111111 333 22222222222 111 11 11111 999999999999999999999999 1 1 22 11 111111
lowQualScore : 55 6666666 11111111 55555 333 777777 6 2 6 333 1111111111 4444 66 2 44 2 11 333 2 0 1 3 22 6666666666666666 2 7 999 2 9 999999 333 2 2 55 22 11111111111111 4 22 333 77777777777777777777777777777777777777777777777777777777777777 77 6 7 9999999 444 5 77 00000 555 1 8 444 1 2 5555 9999 5 2 2 2 777777 6 6 44444444444444444444444444444 5 2 6 6 3 999999999 6 44 9 0000000 8 444444 66 4 333 9 4 1 2 88888888888 6 444 4 55 77777 0 444444444444444444444444 6 6 5 5 11 8 33 7 4 555555
lowQualScore : .. ....... ........ ..... ... ...... . . . ... .......... .... .. . .. . .. ... . . . . .. ................ . . ... . . ...... ... . . .. .. .............. . .. ... .............................................................. .. . . ....... ... . .. ..... ... . . ... . . .... .... . . . . ...... . . ............................. . . . . . ......... . .. . ....... . ...... .. . ... . . . . ........... . ... . .. ..... . ........................ . . . . .. . .. . . ......
lowQualScore : 99 7777777 66666666 00000 222 888888 9 1 3 555 9999999999 2222 44 1 22 0 11 555 6 3 1 8 99 7777777777777777 4 6 000 2 2 111111 777 1 1 55 88 88888888888888 0 88 000 99999999999999999999999999999999999999999999999999999999999999 33 7 2 3333333 777 3 33 00000 000 2 1 777 7 7 7777 1111 3 7 7 7 777777 6 1 44444444444444444444444444444 7 9 8 5 1 111111111 2 22 0 2222222 0 555555 11 4 333 4 4 9 0 77777777777 0 111 9 33 88888 7 555555555555555555555555 0 0 7 0 77 2 88 3 0 000000
consensus : GAACAGAA--CA----T--TTT-------ATTTCGT-----AATA-T-A------GTACAT-TGTACAACATAA---TTTGAAA------TAG-GT----CATTATGACC-CGTG-AT-CAAACATTTC---AGAATATTGTTATTACAAATAT--AC--ATATAA-ATGA-CGG-ATATAATTACTGATTT-CAAACATAAAGAT---TG-G---G-T-TGTAAC--AT--A--------------T-A--T--GTC-----A-----AT-ATG-T--T-A-TA-------G-TATT--AC-ANNC---A---------C--TGCACCACTTTGGTATCNTGTGTG---CTAACATATTTAT-TTT--AAAAAGGA-T---TTACTCATCAATTACTAC---TACAATG-AT----C--T-G-G-G-AGTA-TA------TATTGCATTTTAACAGTG-TANA--C----TTAAA-C-----NA---T-T-TATTTCNTTTGATTTA-CAAT-----T-GATTTCTAT--CNATG------ACCATAGACTCG-----TTTTTCAGTTTAAACGCTTTGT--AT-ATGTAAACAGACATGTT-TCTTATAA---A-NTGTTTGCTGTCAGTTTGTA-ACAGTTCAA-TAGTTTTAAACATACTTGGGTTGATAT-AATAATAACTTTTAATATATATAGGTCCCAA-TCGCCCTTGTATAAACGACATTCAAATAAAAA-ATGATACTCGTCCTCTA--GAACTCGGCACGTATTACATAATC------GTTCTT
Reference ( gi|1 ) : GAACAGAA--CA----T--TTT-------GTTTCGT-----AATA-T-A------GCACAT-TGTATAACATAA---TTTGAAA------TAG-GT----CATACTGACC-CGTA-AT-CAAATGTTTC---ATAATATTGATATAACAATTAT--AC--TTATAA-GTGA-GTG-ATATAACTACTGCTGT-CAAACATCAAGAT---TT-G---G-T-TGTAAC--AT--A--------------T-A--T--GTC-----A-----AT-ACG-T--T-A-TA-------G-TATT--AC-ACTA---A---------C--TGCAGCACCTTGGTTTCAT-TGTG---CTAACATATTTAT-TTT--AAAACTGG-T---TTACTCATCAATAACTAC---TACACTG-AT----C--T-G-G-G-AGTA-TA------TATCGCATTTTGACAGTG-AAGA--C----TTAGA-T-----TA---T-T-TATTTCTTTTAATTTA-CAAT-----T-ATTTTCTGT--CTATA------ACCATAGACTCG-----CTTTTCAGTTTAAACGCTTTGT--AT-ATGTAAAGTGACAGGTT-TCTTATAA---A-ATGTCTGCTGTCAGTTTATA-AAAATTCAT-TAGTTTTAAACATACTTGGGTTGATAT-AGTCATAACCTTTACTATACA-AGGTCGTAAGTCGTTTTTGTATAGACGGCATTAAACTAAAAT-ATGATACCCGTCCTCTA--GAACTCAGCATGTATTACATAATCACGCTAGTTCTT
gi|2 : GAACAGAA--CG----T--TTTTT-----ATTTCGT-----AATA-A-A------GTACAC-CTTACCATATAA---TT--AAA------T---GTACAACATTATGACT-CGTG-AT-TAATCAGTTC---AGAATATTGTTATTACGCATAT--A---TAATAA-ATGG-CGG-ATATAATTACTGATTT-C-AACAT--ATATA--CC-A---G-TATGTCAT--ATTGA--------------T-A--T---TT-----A-----AT-AC-----C-A-TA-------A-CA-A--AA-AC-----A---------C--TGCACCACTTCAGTGCC---TGGGGTTCTAACATATTTTT-TTTTAAAAAAAGA-T---TTACTCATTAATTATT-T---TACAATGAAT----T--G-G-G-G-AGTG-TA------CATTGCATTTCAACAGTG-TATA--C----TTTAA-T----------T-T-TATTTCCC---------------------TTTTCTAT--CAATG------ACCATA------------TTTTAAGTTTAAACGCTTTGC--AT-ATATAAACAGACATGTT-TCTTATA----------------TCAGTTTGTA-ACAGTT-ATACACTTTTAAACAAACATAGGTTGATAT-AATAA-GACCTCTAATTTATATAGGCCCCAAGTC---CTTATGTAAACGACATTCAAATAAAAA-ATGATACTCGTCCTCTGATGAAA-CAGCATG
gi|7 : GAACAGAA--CA----TCTTTT-------ATTTTGT-----AATA-T-A------GTATGT-TGCACAACATTA---TTTGAAA------TAA-GT----CATTATGACC-CGTG-AT-CAAACATTTC---AGAAAATTGTTATTACAAATAT--AC--AT-TAA-ATGATGTG--TAAAATTACTGATTT-CAAACATAAAGTT---AG-G---G-T-TCTAAG--AT--A--------------TAA--TAAGTC-----A-----A----A-T--TAA-CA-------G-TATT--ACAATTAAACA---------C--TGTACCACTTTAGTATCTG-TGTG---CTAACATATTTAT-TAT--AAAA--GGAT---TTACGTGTCAAT--TTAC---TACCATG-ATGCAAT--G-G-G-G-AGTA-TA------TATTGCAATTTGACAGTG-TATC--C----TTAAA-C-----AAT--T-T-TATTTCATTTGA-TTA-TATT-----T-AATTTCTAT--CAATG------Aagacata
gi|8 : caGAACTGAAA-TA----T--GTT-------ATTTTGT-----AATA-C-T------GTAGAT-TGTACAACGTAA---CTTAAAA------TAA-TT----CATAATGACC-AGTG-AT-CAAACATTTA---AAAAAAGTGTTATTACAAATAA--AC--A-ATAA-ATGA-CAA-ATATAATCACTGATTT-CAAACATAAAGAT---TG-G---G-T-TGTAGC--AT--A--------------T-A--T--GTCATGTAA-----AT-ATT-T--A-A-AA-------G-TATT--AC-AAAC---A---------C--TGCACCACTTTGG-CACATGTGTG---CTAAAAT-CTTA-------AAAAAAGA-T---TTACTCATCGATTACTAC---AACAAAG-AT----C--T-G-G-GTAGTA-TA------TATTGCATTTTAACAGTG-CTGA--T----TTAAA-C-----AA---T-T---TTTCATTTGGTTGA-CAAT-----T-AATTTCTCT--CAATG------ACCt
gi|12 : aaaGAACAGAA--CA----TCTTTT-------ATTACGT-----AATA-A-A------GTACAT-TGTACAATATTA---TTTGAAA------TAG-GT----TATTATAATT-CATG-AT-CAAACATTTC---AGAATAT---TATTACAA--AA--AC--CCAT----TAA-ATA-ACATAG-TATTACTTT-CAAACAT-A--------C-G---G-T-T---AC--AT-----------------T-A--T--ATC-----A-----GT-ATG-T--A-A-TA-------G-TATT--AC-AAAT---A---------C--TACA-----------TCGT---TG---CCAACATATTAAT-CTTAGAAAAAGGA-T---TTAGTCATCAATAACTAC---TATAATG-AT----C--TAG-G-G-AGTA-CA------TATGACATTTTAACAGTG-TAGA--T----GTAAA-C-----AA---TAT-TATCTCATTTtat
gi|10 : ataGAACAGAAGGTA----T--TCT-------ATTTCGT-----AATA-T-A------GTACAT-TGT---ACATAA---ATCTAAA------TAG-GT----CATTCTGACC-CGTG-AT--AAACATTTC---AGAATAACGG-ATAA-AATTAC-------------------TG-AT-----------TTT-C-AATATAAAGAT---AG-G---G-C-TGTTAC--AT--G--------------TCG--T--ATC-----A-----------------A-TA-------G-TAT-------------A---------C--TG--------TGG-TACATGTGTG---CTAAAATATTTAT-TCT--AAAAAGGA-T---TT-----------ACTGC---TATAAGG-AT----C--T-ATG-G-TGCA-TA------TACTGCAGTTAAACAGTG-TATAATT----TTAAAGT-----TT---T-G-TATTCATCAT-ATTTA-CAAT-----T-TATTTCTTT--CCATG------ACTATAAACTCG-----TTTTTTAATTTg
gi|6 : caGAACAGAA--CA----T--TTTTT-----ATTTCGT-----AATA-TTAT-----ATACAT-AGTACAACTTAA---TTGGAAA------TCG-GT----CATTATGATCACACA-TTTCATACATTTC---A-AACATTAATA---CAAATAT--AC--AT-TAA-ATGA-CGG-ATATAATTACTGATTT-CAAATTTAAAGAT---TG-G---G-T-TGTTAC--AT--A--------------T----T--ATC-----------TT-ATA-T--TAA-TA-------G-TATT-----ATTA---A---------CATTACATCACTTTGGTATC---TATG---TT--C---TCTGT-TCT--CAG----------TTACT--------ACTACATGTACAATG-AT----C--GAG-G-G-AATA-TA------TATTGCATTTTAA----G-AATA--CCCCTCTATA-T-----TT---T-TGTAGTTGACTTATTGTG-CAATATGTGT-ATTTTATAGAATTACA------ACCATG---TTG-----C-TTTCTGTT-----GGTTTAT--AT--TTTAAA-TGA----TTATTTTATTA---A-AT
gi|18 : gGAACTGAA--CA-----------------GTTT--T-----AAT--T-G------GTACAT-TATACAACATAA---ACTGAAA--------G-GT----CATTATGGCG-CGTG-AT-CAAACATTTC---ACAATATTGTTACTACAAATAT--AC--AT-TAA-ATGA-CAG-ATATAATTACCGATTT-ATAACAT-AAATT---TT-G---A-T-TGTGAA--AG--A--------------T-C--T--GTCATATTA-----AT-ACG-G--T-A-Taatttacacagccaagt
gi|35 : aatacaGAACTAAA--CA----TCTTTT-------ATTTCGT-----AATA-A-A------GTACATCTG-ACAATACAA---TTTGAAA------CAA-GT----Cttgccattggtaatgatacgttctctattcattatatcctagatccacatatggctgaga
gi|36 : caGAACTGAA--CA----T--TTTTTCTTTTATTTCGT-----AATA-T-A------GTA
gi|9 : aacaAACAGAA--CA----TATTTT-------ATTTCGT-----TATA-T-A------GTACAT-TGAACAACATAA---ATTGAAA------AAAAGT----CATTTTAACC-CGTG-AT-TCAACATTTC---ACAATATTATTATAACAAATAT--ACATCTAT----TGA-TTG-ATATAGTTATTGTTTA-TAAATATATAGATATATTGG---G-T-TGTAAC--AT--ATATACGGCATATATT-A--T--ATT-----A-----AT-ATG-T--T-A-TA-------G-AATT--AT-AAAC---A---------C--TGCACCACTTTGGTATCTG-AGTG---CTAACATATTTAT-TTT--AAAAAAA-------TACTCCTCAGTTACTAC---TACAAAG-AT----A--TGG-G-G-AGTA-TA------TATTGCATTTTAACAGTGTATAA--T----TTAG
gi|21 : AACAAAA--CA----T--CTTTA-----ATTTCGT-----AATA-C-A------GTACAT-TGTACAACATAA---TTTAAAATACTAGTAG-GT----CATTATGACC-CGTA-AT-CAAACATTTC---AGAATATttgcgtgaag
gi|34 : aaaaaAACTAAA--CACTTTT--TTT-------ATTTCGT-----AATA-T-ACATGTAGTACAT-TGGACAATATAA---TTTGAAA------CAA-GT----CAaacatatatctgcttgattaagagtttagtttaaaataaatcatagttgcatgtacccttttggaggaataatatactttgtgctatacacattttctatatacgat
gi|3 : aaACAGAA--CA----TCTTTT-------ATATCGT-----CATA-T-A------GTAAAT-TGCACAACATAA---TTTAAAA-------AA-GT----CATCATAACC-CGTG-AG-CAAACATTTC---AGAATATTAAAATA-----TAC--AT--TTA----GTGT-TGG-ATATTACTACTGATTT-CAAACATAAAGAT---AA-G---G-T-TGTAAC--AT--A--------------T-ACAT--GTA-----T-----GT-ATA-T--TGA-TA-------G-TATT--TC-AAAC---A---------C--TGTACCACTTTGGTAT-ATGTGTT---CTAACATGTTTAT-TTT--ACAAAGGA-T---TCAGTCATCAATTAATGT---TACACTG-AT----C--T-G-GAG-AGTA-TA------TATTGCATAT-AACAATG-TATA--C----ATCAA-TA----CAAT-T-T-TATTTCATTTGATTGA-CAAT-----T-GATTTCTAT--CAATG------CCCATTGACTCGGGGTTTTTTTCAATTTAAGCTCTTTAT--AT-ATGTGAACAGACATGTT-T-TGACAATATATATGTTTGCTGTCAATGTGTA-ACAATTCAA-TAATTTTAAACATACTTGGATTAATAT-GATGATAACTTT
gi|23 : agtACAGAA--CA----A--ATT--------TTTCGA-----AATA-T-A------GTACAT-TGTACAAGATAAACATATGAAA------CAG-GT----CATAATGACC-CATG-AT-CAAATATTTC---AGAATATTGATATTACAAATATAAAC-----TAA-ATGA-CGG-ATATGATTAGTAGTTT-AACACATACATAT---TG-G---G-T-TGTAAC--AT--A--------------T-G--T--CCC-----AT----AT-ATG-A--T-ATTA-------A-TATT--aaaatatgtatgtcttgagtgcttgt
gi|32 : ctCAGGA--CA----T--TTT-------ATTTTTTTTATCAATAAC-A------GTACAT-TGTACAGTATCA---TTTGAAA------TAA-AT----CATTATGACC-CTGATAT-CAAAAATCCC---ATtaa
gi|24 : atatacatagagggGAA--CAAG--T--ATT-------ATTTCGT-----AATA-A-A------GAACAT-TGTACAACATAA---ATTGAAA------------------------------A-A---AAATATTTC---AGAGTACTGTTATTACAATAA---AC--AT-TAA-ATGA-CGG-ATATAATTACTGATTT-CAAATACAGAGAT---TG-G---G-T-CGTTTC--AG--A--------------T-A--T--GCC-----------AT-ATGATAAT-A-TA---------TATT--AC-ACT
gi|19 : ----T--TTT-------ATTTCGT-----AATA-T-A------GAACAG-TGTACAACATTA---TT----------------------------ACC-TCTG-AT-CAAACATTTC---AGAATATTATTATTACAAACAT--AC--AT-TAA-ATGA-CGG-ATATAATTATTAATTT-CAAACATGCAGAT---TG-G---G-T-TGTAAT--AT--A--------------T-A--T--GTC-----A------T-ATG-C--T-A-TATTA----A-TATTTAAT-AGTA---ATCATAAACAC--TGCACCACTGCGGTACCTG-TGTG---CTAACATATTTAT-TTT--AAgt
gi|27 : att----T--TTT-------ATTTCGT-----AATA-T-A------GTACAC-TGTAAAACATAA---TTTGAAA------TAA-GT----CATTATGACC-CGTG-AT--AAACATTTC---AGAATAATATTATTACAAATAT--AC--T
gi|22 : cagaacagaacatatttcatttcgtaatgtagtaaattc--TTT-------ATTTTGT-----A-TA-T-A------GTATAT-TGTACAACATCA---TTTGAAA------TAG-GT----CATTAAGACA-TATA-AT-CAAACATTTC---AGAATATTGTTGTTACAAATAT--AC--AT-TAA-ATGA-CCA-ATATAATTACTGATTT-CAAAGGTAATGA----TT-GCATG-T-TGCAGG--AT--G--------------T-A------CC-----A-----GT-ATG--------TA-------GATATT--TT-GCTA---A---------
gi|30 : c--TTC-------ATTTCA------AATA-C-A------GTTCAT-TGTAT--CATTA------GAAA------TAG-AT----CATTATGACC-CATG-AT-CAAACATGTCAGTATAATGTTAACACAA-AGTTAC--Aaaattaaatcttaaaaac
gi|4 : ttcACATAA---TTCGAAA------ATG-GT----TATTTTGACC-TGTG-AT-CAAACATTTC---CCAATATTGTTATTACAAATAT--AC--AT-TAA-ATGA-CGG-ATATAATTACTGATTCACAAACAAAAAGAT---TG-G---G-T-TGTAAT--TT--A--------------T-A--T--GTC-----ATATTAAT-ATT-T--G-A-TA-------G-TATT--AC-AAAC---A---------C--T-CACCCCTTTGGTACCTG-TGTG---CTAACATATTTAT-TTT--TAAAAGGA-T---TAACTAATCAAT------------------T----C--T-GTG-G-AGTA-TA------TATT-CGTTTTAATAGTG-TAGA--C----TTAAA-C-----AA---CGT-TATTTCATTTGATATA-CTTT-----T-GATTTATAT--CGATG------ACCATAGATTCG-----TTTTTCAGTTTAAACGCTTTGT--AT-ATATAAACAGACAGGTT-TCTTATAA---T-GTGTTTACT-TCAGTGTGTATCAATTTTAT-CGTTTTTTAACATACTTGGGTTGATAT-AATATTAACTTTTA---------------AATTAGCCCTTGTATAAACGACATTTAAATAAAAA-ATGATACTCGTCCTCCA--AAAgtcgggaatgtgt
gi|11 : TGACA-CGTG-AT-CAAACATTTC---AGAATATAGCTATTACAAATAT--AC--ATACTA-TTAC-G-G-ATATAATTACTGATTT-CAAACATAAAGAT---CG-A---G-T-TGTAACTTAT--A--------------C-A--T--GTG-----T-----ATCATG-T--TTA-TATTTAATTG-TATT--AT-AAAC---A---------C--TGCACCACTTTGGTA-CATGTGTG---CTAAAGTATTTATGTTT--GAAA--GGAT---TTACTTATCATTTACTAC---TACAATG-AT----CTGT-G-G-G-AGTA-TA------TATTGCATTTTTACAGTG-TAGA---------AGA-T----------T-T-TATTCTTTTTGATTTG-CAAT-----TGATTTCC
gi|13 : GTG-AT-CAAACATTTC---AGAATATAGCTATTACAAATAT--AC----ATAATATTA-CGG-TTATAATTACTGATTT-CAAACATAAAGAT---CG-A---G-T-TGTAACTTAT--A--------------C-A--T--GTG-----T-----ATCATG-T--TTA-TATTTAATTG-TATT--AT-AAAC---A---------C--TGCACCACTTTGGTA-CATGTGTG---CTAAAATATTTATGTTT--GAAA--GGAT---TTACTGATCAATTACTAC---TACAATG-AT----CTGT-G-G-G-AGTA-TA------TATTGAATTTTTACAGTG-TAGA---------AGA-T----------T-T-TATTCTTTTTGATTTG-CAAT-----T-GATTTCTAT--CAATG------ACTATaccactgactatgtcatcc
gi|29 : TAT--AC--ATA-AA-AT-A-GCGGATAGGATTACTGGTTT-CAAATATAAAGAT------G---GAT-TGTTAC--AT--A--------------T-A--T--GCC--------------ATG-T--TCA-TA-------G-TAg
gi|14 : aT-TAGACTTAAATAT---TC-A---G-T-GATAAC--AT--A--------------T-A--T--TTC-----ATATTAAT-ATT-T--A-A-TA-------T-TATT--AC-AAAC---A---------C--TGCACCACTTTG--TACCTGTGTG---CTAACATATTTAT-TTT--AAAAATGA-T---TTGCTCATCAATTGCTAC---TACAATG-AC----C--TAG-G-G-AGAA-TA------TATTGCATTTGAACAGTG-TAGG--C----TTAAA-C-----AAT--T-T-TATTTCATTTAATTTA-TAAT-----T-GATTTCTAT--CAATA------ACCATGGACTCG-----TTTTTCAG-TTAAACGCcatgtcgcaatgtgttgattttatactaaa
gi|5 : aacGAT---TG-G---A-T-TGAAAT--AT--A--------------T-A--T--GTC-----A------T-A---T--T-AATA-------G-CAAT--AC-A--A---A---------CAGTGCATCACTTTGGTATCTT-TATG---TTAACATTTTTAT-TT---AAAATTAA-TATTTTACTCATCAATTGCTAT---TACAATG-AT----C--T-A-G-G-GATAATG------TATTCCATTTTAACAGTG-TATG--C----TAAAA-CACACGTAAGTT-T-TATTTCGTTTGATTTA-CAAT-----T-TATTTATAT--CGATG------ACCATATACTAG-----TTTGTCAGTTTAAACGCTTTGT--ATAATGCAA----ACATGCT-TCTAATAC---A-CAGT-TGCTGTCAGTTTGTA-GCGGTTCAA-TAGTTTTAAACATACGTGGGCTGGTA----TTATA--CTAAAATATAT--AGGTATTA---CGTTCTTGTACAAATAACATTCAAGTAAAATAATGATACTCTTCCTCTA--GAACTCGGCACATATTACATA
gi|16 : tcattatagaaaaatattgactaaatgacggataatatttactgattC--AT--A--------------T-A--T--ATC-----A---------------T-A-TA----------ACT--AG-TTTA---A---------C--TGCACCACTTGGGTTTC-T-T------------TATTTAT-TTT--GAAAAGGA-T---TTGCTCATCATTTACTAC---GATACTG-TT----C--TAG-G-G-TCTA-TACATGTCTATTGCATTTTAACAGTG-TATA--C----TT----T-----TA---T-A-CAATTTT----ATTTA-CATT-----T-GATTTCTAT--TCATA------ACCATAGACTCG-----TTTCTCAGTTTAAACGCTTTGT--AT-ATGTAAACAGACATGTT-TTTT---------ATGTTTGCTGTCA
gi|17 : TAT---TATAATG-AA----C--TAG-G-G-AGTA-TA------TATTACTTTTCAACAGTG-TATT--T----TTATA-C-----AAC--T-T-TATTCATTTTA--TTATCAAT-----G-AAGTCCTAT--CTATG------ACCATAAACTTG-----TTTTTCAGCTGAAACGCTTTGT--AC-TTGTAA----ACA---------------------TTTGCTGTCTGTTTGTA-ATAGTTCAA-TAGAGTTAAACATACTTGGGTTGATAT-AATAATAACTTTTAGAATATATAGGTCaa
gi|26 : TGT--CTATATTTAAAAAGATAAACATG-----TTTTCCAGTTTAAATGTTTTGTTTAT-ATATAAACAAACAGGTT-TCTTATAA---T-TTGTTTGCTGTCAGTTTGTA-ACATTTCAA-TAGTTATAAACAAACTTGGGTTGATAT-AATtgtgtttaaacgacaaacaaata
gi|15 : gaCATATACTCG-----TTATTGAGTTTAAATGCTTTGT--AC-ATATGAACAGACAGGTT-TCTTTTAA---A-TTGTTTGCTGTCAGTTTGTA-ACAATTCAA-TAGTTTTAAACAT--TTCGGTTTATATAAAAAATAACTTTTA
gi|33 : ttttaagtttaaaaaaatagaagtctaattagttttgtttttaacaataattaatgtgaaatccgatcactgtataatgtggtgctaattcaaacttttacaatggtATACGCGCTCTCTA--GAACTCCGCATGTATTACATAATC------GTTCTTaaatatatag
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|20 ): TTAAAACATATTGCAAGTTTTATAAATTCATTGCCCGTTACTATTTATATGTTTATTTATACTAACAATTGATAATTAATATTAACATTATTGCATAGATGTTTTCTTAAGCTATGTTTGTATGTACGTTTATAACATGTCGCAATTATGGTATGATGAAATAGAAATTTTGTATATTGATGCTTATGCTGTTCATTTGAACCAAAGTGTAAATAAAAGAA
Unaligned ( gi|25 ): TAAATTGAGAATCATTAAACAATAATTTATTACATAGCCATTTCCTTCAGCTATGATTGTATTTACGTTTGTTACATGTCGCCATTATGTCAGGATGATATAGAAATGTGTATATTGATACTTATGCTGTAAATATGAACCTAACATTAAAT
Unaligned ( gi|28 ): ATTTTTTTAGAAACATATATATAAACGTTTATTACATGTCGCCATTATGTTATGATAATATAGAAATTTGCATAGTTATGCTTTTGCTGTTCATATGAACCTAAGTGTAAATAAATAACTGAA
Unaligned ( gi|31 ): TTATGTATATGTATTACATGTCGCCATTACGTTATACTTAAATTGAAACTTGTACATTTGATGCTAATGTTGTTCATATGAAAATAAGTGTAAATAAAGAATT
Unaligned ( gi|37 ): AACAAAACACAACATTGCACAACACATGCAACGCAA
Unaligned ( gi|38 ): CATGTACCTTAAGTTTCCATAACATGCAATTTC
Alignments
lowQualScore : 1111111 1111111 22 4444444444444444444444444444444444444444444444 1111111 111 1111 3333333333 222 1 5555555555 1 555555
lowQualScore : 55 5555555 3333333 44444 222 777777 1 333 8888888888 4444 333 22 0 0 22 00 0 2 2 0 4444 22 0 55 4444 22 2222222222222222222222222222222222222222222222 4 5555555 2 9999999 444 3 888 33 444 2 5555 7777 5 2 2 2 777777 1 8888 0 2 2222222222 5 2 2 1 0 1 3 99999 66 4 4 9999 222 1 5 5 33 5 2 5 8888888888 0 3 0 777777
lowQualScore : .. ....... ....... ..... ... ...... . ... .......... .... ... .. . . .. .. . . . . .... .. . .. .... .. .............................................. . ....... . ....... ... . ... .. ... . .... .... . . . . ...... . .... . . .......... . . . . . . . ..... .. . . .... ... . . . .. . . . .......... . . . ......
lowQualScore : 33 5555555 4444444 55555 111 000000 9 333 9999999999 0000 555 66 4 4 66 22 8 1 0 4 2222 88 6 22 7777 66 8888888888888888888888888888888888888888888888 0 8888888 0 1111111 888 5 222 77 444 5 3333 4444 0 5 5 5 222222 0 9999 2 9 4444444444 7 9 9 0 7 0 5 11111 11 4 3 4444 111 1 0 0 11 7 9 0 0000000000 0 7 7 555555
consensus : GAACAGAA--CA----T--TTT-------ATTTCGT-----AATA-T-A------GTACAT-TGTACAACATAA---TTTGAAA------TAG-GT----CATTATGACC---CGTG--ATCAAACATTTCAGAATATTGTTATTACAAATAT--ACAT--TAAATGACGGATA-TAATTACTGATTT-CAAACATAAAGAT----TG--GGTTGTAAC--ATAT-A--T--G--------------TC-----A------------AT-ATG-T--N-A-TA-------GTA-TTAC----AAACACTGCACCACTTTGGTATCNTGTGTGCTAACATATTTATTTT--AAA--AAGGATTTACTCATCAATTACTAC---TACAATG-AT----C--T-G-G-G-AGTA-TA------TATTGCATTTTAACAGTGTANA--C-TTAA-ACA------A--T-TT-AT-TTCATTTGATTTACAATTGATTTCTATCAATGACCATAGACTCG-----TTTTTCAGTTTAAACGCTTTGT--AT-ATGTAAACAGACANGTTTCT----TATAAA-TGTTTGCTGTCAGTTTGTAACAGTTCAATAG-TTTTAAACATACTTGGGTTGATAT-AATAATAACTTTTAAAATATATAGGTC-TAA--CGTCCTTGTATAAACGACATTCAAATAAAA-AATGATACTCGTCCTCTAGAACTCGGCACGTATTACATAATCACGCTAGTTCTT
Reference ( family-4809 ) : GAACAGAA--CA----T--TTT-------ATTTCGT-----AATA-T-A------GTACAT-TGTACAACATAA---TTTGAAA------TAG-GT----CATTATGACC---CGTG--ATCAAACATTTCAGAATATTGTTATTACAAATAT--ACATA-TAAATGACGGATA-TAATTACTGATTT-CAAACATAAAGAT----TG--GGTTGTAAC--ATAT-A--T--G--------------TC-----A------------AT-ATG-T--T-A-TA-------GTA-TTAC----ANNCACTGCACCACTTTGGTATCNTGTGTGCTAACATATTTATTTT--AAA--AAGGATTTACTCATCAATTACTAC---TACAATG-AT----C--T-G-G-G-AGTA-TA------TATTGCATTTTAACAGTGTANA--C-TTAA-ACN------A--T-TT-AT-TTCNTTTGATTTACAATTGATTTCTATCNATGACCATAGACTCG-----TTTTTCAGTTTAAACGCTTTGT--AT-ATGTAAACAGACATGTTTCT----TATAAANTGTTTGCTGTCAGTTTGTAACAGTTCAATAG-TTTTAAACATACTTGGGTTGATAT-AATAATAACTTTTAATATATATAGGTCCCAA-TCGCCCTTGTATAAACGACATTCAAATAAAA-AATGATACTCGTCCTCTAGAACTCGGCACGTATTACATAATC------GTTCTT
gi|1 : GAACAGAA--CA----T--TTT-------GTTTCGT-----AATA-T-A------GCACAT-TGTATAACATAA---TTTGAAA------TAG-GT----CATACTGACC---CGTA--ATCAAATGTTTCATAATATTGATATAACAATTAT--ACTTA-TAAGTGAGTGATA-TAACTACTGCTGT-CAAACATCAAGAT----TT--GGTTGTAAC--ATAT-A--T--G--------------TC-----A------------AT-ACG-T--T-A-TA-------GTA-TTAC----ACTAACTGCAGCACCTTGGTTTCAT-TGTGCTAACATATTTATTTT--AAA--ACTGGTTTACTCATCAATAACTAC---TACACTG-AT----C--T-G-G-G-AGTA-TA------TATCGCATTTTGACAGTGAAGA--C-TTAG-ATT------A--T-TT-AT-TTCTTTTAATTTACAATTATTTTCTGTCTATAACCATAGACTCG-----CTTTTCAGTTTAAACGCTTTGT--AT-ATGTAAAGTGACAGGTTTCT----TATAAAATGTCTGCTGTCAGTTTATAAAAATTCATTAG-TTTTAAACATACTTGGGTTGATAT-AGTCATAACCTTTACTATACA-AGGTCGTAAGTCGTTTTTGTATAGACGGCATTAAACTAAAA-TATGATACCCGTCCTCTAGAACTCAGCATGTATTACATAATCACGCTAGTTCTT
gi|10 : GAACAGAAGGTA----T--TCT-------ATTTCGT-----AATA-T-A------GTACAT-TGT---ACATAA---ATCTAAA------TAG-GT----CATTCTGACC---CGTG--AT-AAACATTTCAGAATA------------------ACGGA-TAA------------AATTACTGATTT-TCAATATAAAGAT----AG--GGCTGTTAC--ATGTCG--T--A--------------TC-----A------------------------A-TA-------GTA-T-----------ACTG--------TGGTA-CATGTGTGCTAAAATATTTATTCT--AAA--AAGGAT-----------TTACTGC---TATAAGG-AT----C--T-ATG-G-TGCA-TA------TACTGCAGTTAAACAGTGTATAATT-TTAA-AGT---------T-TT-GTATTCATCATATTTACAATTTATTTCTTTCCATGACTATAAACTCG-----TTTTTTAATTT
gi|11 : caTGACA---CGTG--ATCAAACATTTCAGAATATAGCTATTACAAATAT--ACATACTA--TTACGGATA-TAATTACTGATTT-CAAACATAAAGAT----CG--AGTTGTAACTTATAC-A--T--G--------------TG-----T------------ATCATG-T--TTA-TATTTAATTGTA-TTAT----AAACACTGCACCACTTTGGTA-CATGTGTGCTAAAGTATTTATGTT--TGA--AAGGATTTACTTATCATTTACTAC---TACAATG-AT----CTGT-G-G-G-AGTA-TA------TATTGCATTTTTACAGTGTAGA------AG-AT----------T-TT-AT-TCTTTTTGATTTGCAATTGATTTCCACCACTGACTAT
gi|12 : GAACAGAA--CA----TCTTTT-------ATTACGT-----AATA-A-A------GTACAT-TGTACAATATTA---TTTGAAA------TAG-GT----TATTATAATT---CATG--ATCAAACATTTCAGAATA---TTATTACAAAAAC--CCAT--TAAATAAC--ATA-GTATTAC---TTT-CAAACATA----------C--GGTT---AC--AT-T-A--T--A--------------TC-----A------------GT-ATG-T--A-A-TA-------GTA-TTAC----AAATACTAC-----------ATCGT---TGCCAACATATTAATCTTAGAAA--AAGGATTTAGTCATCAATAACTAC---TATAATG-AT----C--TAG-G-G-AGTA-CA------TATGACATTTTAACAGTGTAGA--T-GTAA-ACA------A--TATT-AT-CTCATTTGgtcatcc
gi|13 : ataGTG--ATCAAACATTTCAGAATATAGCTATTACAAATAT--ACATA--ATATTACGGTTA-TAATTACTGATTT-CAAACATAAAGAT----CG--AGTTGTAACTTATAC-A--T--G--------------TG-----T------------ATCATG-T--TTA-TATTTAATTGTA-TTAT----AAACACTGCACCACTTTGGTA-CATGTGTGCTAAAATATTTATGTT--TGA--AAGGATTTACTGATCAATTACTAC---TACAATG-AT----CTGT-G-G-G-AGTA-TA------TATTGAATTTTTACAGTGTAGA------AG-AT----------T-TT-AT-TCTTTTTGATTTGCAATTGATTTCTATCAATGACTAT
gi|14 : T-TAGACTTAAATAT----TC--AGTGATAAC--ATAT-A--T--T--------------TC-----ATATTA-------AT-ATT-T--A-A-TA-------TTA-TTAC----AAACACTGCACCACTTTG-TA-CCTGTGTGCTAACATATTTATTTT--AAA--AATGATTTGCTCATCAATTGCTAC---TACAATG-AC----C--TAG-G-G-AGAA-TA------TATTGCATTTGAACAGTGTAGG--C-TTAA-ACA------AT-T-TT-AT-TTCATTTAATTTATAATTGATTTCTATCAATAACCATGGACTCG-----TTTTTCAG-TTAAACGCg
gi|15 : aacACTTTTA-CAATGGTCATATACTCG-----TTATTGAGTTTAAATGCTTTGT--AC-ATATGAACAGACAGGTTTCT----TTTAAATTGTTTGCTGTCAGTTTGTAACAATTCAATAG-TTTTAAACAT--TTCGGTTTATATAAAAAATAACTTTTAAAATATATAG
gi|16 : ttttaagtttaaaaaaatagaagtctaattagttttgtttttaacaataattaatgtgaaatccgatcactgtataatgtggtgctaattcaaC--ATAT-A--T--A--------------TC-----A-------------T-ATA------ACTA-------GT--TTA---------ACTGCACCACTTGGGTTTCTT-----------TATTTATTTT--GAA--AAGGATTTGCTCATCATTTACTAC---GATACTG-TT----C--TAG-G-G-TCTA-TACATGTCTATTGCATTTTAACAGTGTATA--C-T----------------T-TT-AT-ACAATTTTATTTACATTTGATTTCTATTCATAACCATAGACTCG-----TTTCTCAGTTTAAACGCTTTGT--AT-ATGTAAACAGACATGTTTTT----TA-----TGTTTGCTGTCA
gi|17 : TAT---TATAATG-AA----C--TAG-G-G-AGTA-TA------TATTACTTTTCAACAGTGTATT--T-TTAT-ACA------AC-T-TT-A--TTCATTTTATTATCAATGAAGTCCTATCTATGACCATAAACTTG-----TTTTTCAGCTGAAACGCTTTGT--AC-TTGTAAACA------------------------TTTGCTGTCTGTTTGTAATAGTTCAATAG-AGTTAAACATACTTGGGTTGATAT-AATAATAACTTTTAGAATATATAGGTC------TG----TGTTTAAACGACAAACAAATAaa
gi|18 : GAACTGAA--CA----G--TTT-------------T-----AAT--T-G------GTACAT-TATACAACATAA---ACTGAAA--------G-GT----CATTATGGCG---CGTG--ATCAAACATTTCACAATATTGTTACTACAAATAT--ACAT--TAAATGACAGATA-TAATTACCGATTT-ATAACATAAAT-T----TT--GATTGTGAA--AGAT-C--T--G--------------TC------------------AT-AT--T--A-A-TACG-----GTA-TT
gi|19 : aataca----T--TTT-------ATTTCGT-----AATA-T-A------GAACAG-TGTACAACAT-------------------------------TATTACC---TCTG--ATCAAACATTTCAGAATATTATTATTACAAACAT--ACAT--TAAATGACGGATA-TAATTATTAATTT-CAAACATGCAGAT----TG--GGTTGTAAT--ATAT-A--T--G--------------TC-----ATATGCTATATTAAT-ATT-T--A-A-TA-------GTAATCAT----AAACACTGCACCACTGCGGTA-CCTGTGTGCTAACATATTTATTTT--AAtgccattggtaatgatacgttctctattcattatatcctagatccacatatggctgaga
gi|2 : attGAACAGAA--CG----T--TTTTT-----ATTTCGT-----AATA-A-A------GTACAC-CTTACCATATAA---TT--AAA------T---GTACAACATTATGACT---CGTG--ATTAATCAGTTCAGAATATTGTTATTACGCATAT--ATA-A-TAAATGGCGGATA-TAATTACTGATTT-C-AACATATATAC----CA--GTATGT--C--ATAT----T--G----------------------------------AT-ATT-T--A-A-TA-------CCA-TAACAA--AAACACTGCACCACTTCAGTGCCTGGGGTTCTAACATATTTTTTTTTAAAA--AAAGATTTACTCATTAATTATT-T---TACAATGAAT----T--G-G-G-G-AGTG-TA------CATTGCATTTCAACAGTGTATA--C-TTTA-AT----------T-TT-AT-TTCCCT--------------TTTCTATCAATGACCATA------------TTTTAAGTTTAAACGCTTTGC--AT-ATATAAACAGACATGTTTCT----TATA------------TCAGTTTGTAACAGTTATACAC-TTTTAAACAAACATAGGTTGATAT-AATAA-GACCTCTAATTTATATAGGCCCCAA---GTCCTTATGTAAACGACATTCAAATAAAA-AATGATACTCGTCCTCT
gi|21 : AACAAAA--CA----T--CTTTA-----ATTTCGT-----AATA-C-A------GTACAT-TGTACAACATAA---TTTAAAATACTAGTAG-GT----CATTATGACC---CGTA--ATCAAACATTTCAGAATATgatgaaacagcatgagacata
gi|22 : aaaaa--TTT-------ATTTTGT-----A-TA-T-A------GTATAT-TGTACAACATCA---TTTGAAA------TAG-GT----CATTAAGACA---TATA--ATCAAACATTTCAGAATATTGTTGTTACAAATAT--ACAT--TAAATGACCAATA-TAATTACTGATTT-CAAAGGTAATGAT----TGCATGTTGCAGG--ATGT-A--------------------CC-----A------------GT-ATG-T--aacatatatctgcttgattaagagtttagtttaaaataaatcatagttgcatgtacccttttggaggaataatatactttgtgctatacacattttctatatacgat
gi|23 : cACAGAA--CA----A--ATT--------TTTCGA-----AATA-T-A------GTACAT-TGTACAAGATAAACATATGAAA------CAG-GT----CATAATGACC---CATG--ATCAAATATTTCAGAATATTGATATTACAAATAT--AAAC--TAAATGACGGATA-TGATTAGTAGTTT-AACACATACATAT----TG--GGTTGTAAC--ATAT-G--T--C--------------CC-----AT-----------AT-ATG-A--T-ATTA-------ATA-TTagatattttgctaaaaattaaatcttaaaaac
gi|24 : ctGAA--CAAG--T--ATT-------ATTTCGT-----AATA-A-A------GAACAT-TGTACAACATAA---ATTGAAA------AA------------------------------AAATATTTCAGAGTACTGTTATTACAA-TAA--ACAT--TAAATGACGGATA-TAATTACTGATTT-CAAATACAGAGAT----TG--GGTCGTTTC--AGAT-A--T--G--------------CC------------------AT-ATGATAAT-A-TA--------TA-TTAC----Ataa
gi|26 : ATAAACATG-----TTTTCCAGTTTAAATGTTTTGTTTAT-ATATAAACAAACAGGTTTCT----TATAATTTGTTTGCTGTCAGTTTGTAACATTTCAATAG-TTATAAACAAACTTGGGTTGATAT-AATctgt
gi|27 : gatgtctatatttaaaaagGAACAGAA--CA----TATTTC-------ATTTCGT-----AATG-T-A------GTAAAT-T
gi|27 : ca----T--TTT-------ATTTCGT-----AATA-T-A------GTACAC-TGTAAAACATAA---TTTGAAA------TAA-GT----CATTATGACC---CGTG--AT-AAACATTTCAGAATAATATTATTACAAATAT--ACcttttatttcgtaatatagtacactgtaaaacataatttgaaataagtcattatgacccgtgataaacatttcagaataatattattacaaatatact
gi|29 : cagaacagaacatatttcatttcgtaatgtagtaaattcATAT--ACATA--AAATAGCGGATA-GGATTACTGGTTT-CAAATATAAAGA-----TG--GATTGTTAC--ATAT-A--T--G--------------CC---------------------ATG-T--TCA-TA-------GTA-t
gi|3 : ACAGAA--CA----TCTTTT-------ATATCGT-----CATA-T-A------GTAAAT-TGCACAACATAA---TTTAAAA-------AA-GT----CATCATAACC---CGTG--AGCAAACATTTCAGAATATTA-------AAATAT--ACATT-TAG-TGTTGGATA-TTACTACTGATTT-CAAACATAAAGAT----AA--GGTTGTAAC--ATAT-ACAT--G--------------TA-----T------------GT-ATA-T--TGA-TA-------GTA-TTTC----AAACACTGTACCACTTTGGTAT-ATGTGTTCTAACATGTTTATTTT--ACA--AAGGATTCAGTCATCAATTAATGT---TACACTG-AT----C--T-G-GAG-AGTA-TA------TATTGCATAT-AACAATGTATA--CATCAATACA------A--T-TTTAT-TTCATTTGATTGACAATTGATTTCTATCAATGCCCATTGACTCGGGGTTTTTTTCAATTTAAGCTCTTTAT--AT-ATGTGAACAGACATGTTTTGACAATATATA-TGTTTGCTGTCAATGTGTAACAATTCAATAA-TTTTAAACATACTTGGATTAATAT-GATGATAAC-TTTAAAATATGTATGTCcatgtcgcaatgtgttgattttatactaaa
gi|30 : agt--TTC-------ATTTCA------AATA-C-A------GTTCAT-TGTA-----TCA---TTAGAAA------TAG-AT----CATTATGACC---CATG--ATCAAACATGTCAGTATAATGTTAACACAAAGTT--ACAttgagtgcttgt
gi|32 : ttcCAGGA--CA----T--TTT-------ATTTTTTTTATCAATAAC-A------GTACAT-TGTACAGTATCA---TTTGAAA------TAA-AT----CATTATGACC---C-TGATATCAAAAATCCCAgtcgggaatgtgt
gi|33 : atatacatagagggATACGCGCTCTCTAGAACTCCGCATGTATTACATAATC------GTTCTTt
gi|34 : AACTAAA--CACTTTT--TTT-------ATTTCGT-----AATA-T-ACATGTAGTACAT-TGGACAATATAA---TTTGAAA------CAA-GT----CAagaaaggtgtcctccgttgcttccatttacccttttatacctcaagcacatg
gi|35 : aaGAACTAAA--CA----TCTTTT-------ATTTCGT-----AATA-A-A------GTACATCTG-ACAATACAA---TTTGAAA------CAA-GT----C
gi|36 : caGAACTGAA--CA----T--TTTTTCTTTTATTTCGT-----AATA-T-A------GTA
gi|4 : aacaACATAA---TTCGAAA------ATG-GT----TATTTTGACC---TGTG--ATCAAACATTTCCCAATATTGTTATTACAAATAT--ACAT--TAAATGACGGATA-TAATTACTGATTCACAAACAAAAAGAT----TG--GGTTGTAAT--TTAT-A--T--G--------------TC-----ATATTA-------AT-ATT-T--G-A-TA-------GTA-TTAC----AAACACT-CACCCCTTTGGTA-CCTGTGTGCTAACATATTTATTTT--TAA--AAGGATTAACTAATCAATT----------------------C--T-GTG-G-AGTA-TA------TATT-CGTTTTAATAGTGTAGA--C-TTAA-ACA------A--CGTT-AT-TTCATTTGATATACTTTTGATTTATATCGATGACCATAGATTCG-----TTTTTCAGTTTAAACGCTTTGT--AT-ATATAAACAGACAGGTTTCT----TATAATGTGTTTACT-TCAGTGTGTATCAATTTTATCGTTTTTTAACATACTTGGGTTGATAT-AATATTAACTTTTAA-AT-TA-------------GCCCTTGTATAAACGACATTTAAATAAAA-AATGATACTCGTCCTCCAAAA
gi|5 : AAATATTGAC----TAAATGACGGATAATATTTACTGATT------------GAT----TG--GATTGAAAT--ATAT-A--T--G--------------TC-----A-------------T-AT--T--A-A-TA-------GCA-ATAC----AAACAGTGCATCACTTTGGTATCTT-TATGTTAACATTTTTATTTA--AAATTAATATTTTACTCATCAATTGCTAT---TACAATG-AT----C--T-A-G-G-GATAATG------TATTCCATTTTAACAGTGTATG--C-TAAA-ACACACGTAAGTT-TT-AT-TTCGTTTGATTTACAATTTATTTATATCGATGACCATATACTAG-----TTTGTCAGTTTAAACGCTTTGT--ATAATG----CAAACATGCTTCT----AATACACAG-TTGCTGTCAGTTTGTAGCGGTTCAATAG-TTTTAAACATACGTGGGCTGGTAT-TATA-------CTAAAATATATAGGTATTA---CGTTCTTGTACAAATAACATTCAAGTAAAATAATGATACTCTTCCTCTAGAACTCGGCACATATTACATA
gi|6 : tcattatagaaGAACAGAA--CA----T--TTTTT-----ATTTCGT-----AATA-TTAT-----ATACAT-AGTACAACTTAA---TTGGAAA------TCG-GT----CATTATGATCACACATT---TCATACATTTCA-AACATT---AATACAAATAT--ACAT--TAAATGACGGATA-TAATTACTGATTT-CAAATTTAAAGAT----TG--GGTTGTTAC--ATAT----T--A--------------TC------------------TT-ATA-T--TAA-TA-------GTA-TTAT----TAACATTACATCACTTTGGTATC-TATGTTC-------TCTGTTCT--CAG--------TTAC--------TACTACATGTACAATG-AT----C--GAG-G-G-AATA-TA------TATTGCATTTTAA
gi|7 : gGAACAGAA--CA----TCTTTT-------ATTTTGT-----AATA-T-A------GTATGT-TGCACAACATTA---TTTGAAA------TAA-GT----CATTATGACC---CGTG--ATCAAACATTTCAGAAAATTGTTATTACAAATAT--ACAT--TAAATGATGTGTA-AAATTACTGATTT-CAAACATAAAGTT----AG--GGTTCTAAG--ATATAA--TAAG--------------TC-----A------------A--AT--T--A-A-CA-------GTA-TTACAATTAAACACTGTACCACTTTAGTATC-TGTGTGCTAACATATTTATTAT---AA--AAGGATTTACGTGTCAATT--TAC---TACCATG-ATGCAAT--G-G-G-G-AGTA-TA------TATTGCAATTTGACAGTGTATC--C-TTAA-ACA------AT-T-TT-AT-TTCATTTGA-TTATATTTAATTTCTATCAATGAgaatacccctctatatttttgtagttgacttattgtgcaatatgtgtattttatagaattacaaccatgttgctttctgttggtttatattttaaatgattattttattaaataatttacacagccaagt
gi|8 : caGAACTGAAA-TA----T--GTT-------ATTTTGT-----AATA-C-T------GTAGAT-TGTACAACGTAA---CTTAAAA------TAA-TT----CATAATGACC---AGTG--ATCAAACATTTAAAAAAAGTGTTATTACAAATAA--ACA-A-TAAATGACAAATA-TAATCACTGATTT-CAAACATAAAGAT----TG--GGTTGTAGC--ATAT-A--T--G--------------TCATGTAA------------AT-ATT-T--A-A-AA-------GTA-TTAC----AAACACTGCACCACTTTGGCA-CATGTGTGCTAAAAT-CTTA------AAA--AAAGATTTACTCATCGATTACTAC---AACAAAG-AT----C--T-G-G-GTAGTA-TA------TATTGCATTTTAACAGTGCTGA--T-TTAA-ACA------A--T-T---T-TTCATTTGGTTGACAATTAATTTCTCTCAATGACCt
gi|9 : aaaAACAGAA--CA----TATTTT-------ATTTCGT-----TATA-T-A------GTACAT-TGAACAACATAA---ATTGAAA------AAAAGT----CATTTTAACC---CGTG--ATTCAACATTTCACAATATTATTATAACAAATAT--ACATC-TAT-TGATTGATA-TAGTTATTGTTTA-TAAATATATAGATATATTG--GGTTGTAAC--ATAT-A--T--ACGGCATATATTATATT-----A------------AT-ATG-T--T-A-TA-------GAA-TTAT----AAACACTGCACCACTTTGGTATC-TGAGTGCTAACATATTTATTTT--AAA--AAAA---TACTCCTCAGTTACTAC---TACAAAG-AT----A--TGG-G-G-AGTA-TA------TATTGCATTTTAACAGTGTATA--A-TTtat
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TTAAAACATATTGCAAGTTTTATAAATTCATTGCCCGTTACTATTTATATGTTTATTTATACTAACAATTGATAATTAATATTAACATTATTGCATAGATGTTTTCTTAAGCTATGTTTGTATGTACGTTTATAACATGTCGCAATTATGGTATGATGAAATAGAAATTTTGTATATTGATGCTTATGCTGTTCATTTGAACCAAAGTGTAAATAAAAGAA
Unaligned ( gi|25 ): TAAATTGAGAATCATTAAACAATAATTTATTACATAGCCATTTCCTTCAGCTATGATTGTATTTACGTTTGTTACATGTCGCCATTATGTCAGGATGATATAGAAATGTGTATATTGATACTTATGCTGTAAATATGAACCTAACATTAAAT
Unaligned ( gi|28 ): ATTTTTTTAGAAACATATATATAAACGTTTATTACATGTCGCCATTATGTTATGATAATATAGAAATTTGCATAGTTATGCTTTTGCTGTTCATATGAACCTAAGTGTAAATAAATAACTGAA
Unaligned ( gi|31 ): TTATGTATATGTATTACATGTCGCCATTACGTTATACTTAAATTGAAACTTGTACATTTGATGCTAATGTTGTTCATATGAAAATAAGTGTAAATAAAGAATT
Unaligned ( gi|37 ): AACAAAACACAACATTGCACAACACATGCAACGCAA
Unaligned ( gi|38 ): CATGTACCTTAAGTTTCCATAACATGCAATTTC
Alignments
lowQualScore : 1111111 1111111 444444444444444444444444444444444444444444444444444 11 111 1111 22222222222 22222222222222 3333333 1 222222
lowQualScore : 55 5555555 3333333 44444 222 777777 1 333 8888888888 4444 333 22 1 2 2 2 4444 22 1 55 000000000000000000000000000000000000000000000000000 88 22 1 44 2 8888 444 3 88888 33 0 444 2 5555 7777 5 2 2 2 777777 999999 0 2 11111111111 5 2 2 0 0 3 99999 66 4 2 44444444444444 1 5 888 5 0 1 5555555 3 0 3 0 999999
lowQualScore : .. ....... ....... ..... ... ...... . ... .......... .... ... .. . . . . .... .. . .. ................................................... .. .. . .. . .... ... . ..... .. . ... . .... .... . . . . ...... ...... . . ........... . . . . . . ..... .. . . .............. . . ... . . . ....... . . . . ......
lowQualScore : 33 5555555 4444444 55555 111 000000 9 333 9999999999 0000 555 66 7 1 1 0 2222 88 8 22 444444444444444444444444444444444444444444444444444 44 99 9 55 0 2222 888 5 22222 77 5 444 5 3333 4444 0 5 5 5 222222 555555 2 9 11111111111 7 9 9 7 3 5 11111 11 4 6 77777777777777 1 0 999 7 1 4 8888888 7 0 7 7 000000
consensus : GAACAGAA--CA----T--TTT-------ATTTCGT-----AATA-T-A------GTACAT-TGTACAACATAA---TTTGAAA------TAG-GT----CATTATGACC---CGTG--ATCAAACATTTCAGAATATTGTTATTACAAATATACAT-TAAATGACGGATA-TAATTACTGATTT-CAAACATAAAG----ATTG--GGTTGTAAC--ATA--------------T-A------T--G----TC-----A------------ATAT--T-AA-TA--GTA-TTAC----AAACACTGCACCACTTTGGTATCNTGTGTGCTAACATATTTATTTT--A--AA--AAGGATTTACTCATCAATTACTAC---TACAATG-AT----C--T-G-G-G-AGTA-TA------TATTGCATTTTAACAGTGTANA--C-TTAA-ACA------A--T-TT-AT-TTCATTTGATTTACAATTGATTTCTATCAATGACCATAGACTCG-----TTTTTCAGTTTAAACGCTTTGT--AT-ATGTAAACAGACANGTTTCT----TAT-AA-AT-GTTTGCTGTCAGTTTGTAACAGTTCAATAG-TTTTAAACATACTTGGGTTGATATAATAA-TAACTTTTAAAATATATAGGTC-TNA---GTCCTTGTATAAACGACATTCAAATAAAA-AATGATACTCGTCCTCTAGAACTCGGCACGTATTACATAATCACGCTAGTTCTT
Reference ( family-4809 ) : GAACAGAA--CA----T--TTT-------ATTTCGT-----AATA-T-A------GTACAT-TGTACAACATAA---TTTGAAA------TAG-GT----CATTATGACC---CGTG--ATCAAACATTTCAGAATATTGTTATTACAAATATACAT-TAAATGACGGATA-TAATTACTGATTT-CAAACATAAAG----ATTG--GGTTGTAAC--ATA--------------T-A------T--G----TC-----A------------ATATG-T-NA-TA--GTA-TTAC----AAACACTGCACCACTTTGGTATCNTGTGTGCTAACATATTTATTTT--A--AA--AAGGATTTACTCATCAATTACTAC---TACAATG-AT----C--T-G-G-G-AGTA-TA------TATTGCATTTTAACAGTGTANA--C-TTAA-ACA------A--T-TT-AT-TTCATTTGATTTACAATTGATTTCTATCAATGACCATAGACTCG-----TTTTTCAGTTTAAACGCTTTGT--AT-ATGTAAACAGACANGTTTCT----TAT-AA-AT-GTTTGCTGTCAGTTTGTAACAGTTCAATAG-TTTTAAACATACTTGGGTTGATATAATAA-TAACTTTTAAAATATATAGGTC-TAA--CGTCCTTGTATAAACGACATTCAAATAAAA-AATGATACTCGTCCTCTAGAACTCGGCACGTATTACATAATCACGCTAGTTCTT
gi|1 : GAACAGAA--CA----T--TTT-------GTTTCGT-----AATA-T-A------GCACAT-TGTATAACATAA---TTTGAAA------TAG-GT----CATACTGACC---CGTA--ATCAAATGTTTCATAATATTGATATAACAATTATACTTATAAGTGAGTGATA-TAACTACTGCTGT-CAAACATCAAG----ATTT--GGTTGTAAC--ATA--------------T-A------T--G----TC-----A------------ATACG-T-TA-TA--GTA-TTAC----ACTAACTGCAGCACCTTGGTTTCAT-TGTGCTAACATATTTATTTT--A--AA--ACTGGTTTACTCATCAATAACTAC---TACACTG-AT----C--T-G-G-G-AGTA-TA------TATCGCATTTTGACAGTGAAGA--C-TTAG-ATT------A--T-TT-AT-TTCTTTTAATTTACAATTATTTTCTGTCTATAACCATAGACTCG-----CTTTTCAGTTTAAACGCTTTGT--AT-ATGTAAAGTGACAGGTTTCT----TATAAA-AT-GTCTGCTGTCAGTTTATAAAAATTCATTAG-TTTTAAACATACTTGGGTTGATATAGTCA-TAACCTTTACTATACA-AGGTCGTAAGTCGTTTTTGTATAGACGGCATTAAACTAAAA-TATGATACCCGTCCTCTAGAACTCAGCATGTATTACATAATCACGCTAGTTCTT
gi|10 : GAACAGAAGGTA----T--TCT-------ATTTCGT-----AATA-T-A------GTACAT-TGTACA---TAA---ATCTAAA------TAG-GT----CATTCTGACC---CGTG--AT-AAACATTTCAGAATA---------------------------ACGGATA-AAATTACTGATTT-TCAATATAAAG----ATAG--GGCTGT------TA--------------C-A------T--G----TC-----G-------------TAT--C-AA-TA--GTA-T-----------ACTG--------TGGTA-CATGTGTGCTAAAATATTTATTCT--A--AA--AAGGATTTACT-----------GC---TATAAGG-AT----C--T-ATG-G-TGCA-TA------TACTGCAGTTAAACAGTGTATAATT-TTAA-A-G------T--T-TT-GTATTCATCATATTTACAATTTATTTCTTTCCATGACTATAAACTCG-----TTTTTTAATTT
gi|11 : caTGACA---CGTG--ATCAAACATTTCAGAATATAGCTATTACAAATATACAT-ACTATTACGGATA-TAATTACTGATTT-CAAACATAAAG----ATCG--AGTTGTAACTTATA--------------C-A------T--GTGTATC-----ATGTTT-------ATATT-T-AA-TT--GTA-TTAT----AAACACTGCACCACTTTGGTA-CATGTGTGCTAAAGTATTTATGTT--T--GA--AAGGATTTACTTATCATTTACTAC---TACAATG-AT----CTGT-G-G-G-AGTA-TA------TATTGCATTTTTACAGTGTAG--------A-AGA------T--T-TT-AT-TCTTTTTGATTTGCAATTGATTTCCACCACTGACTAT
gi|12 : GAACAGAA--CA----TCTTTT-------ATTACGT-----AATA-A-A------GTACAT-TGTACAATATTA---TTTGAAA------TAG-GT----TATTATAATT---CATG--ATCAAACATTTCAGAATATT---ATTACAAAAACCCAT-TAAATAAC--ATA-GTATTACT---TT-CAAACATAC------------GGTT---AC--AT---------------T-A------T--A----TC-----A------------GTATG-T-AA-TA--GTA-TTAC----AAATACTACA-----------TCGT---TGCCAACATATTAATCTT--AGAAA--AAGGATTTAGTCATCAATAACTAC---TATAATG-AT----C--TAG-G-G-AGTA-CA------TATGACATTTTAACAGTGTAGA--T-GTAA-ACA------A--TATT-AT-CTCATTTGgtcatcc
gi|13 : ataGTG--ATCAAACATTTCAGAATATAGCTATTACAAATATACAT-AATATTACGGTTA-TAATTACTGATTT-CAAACATAAAG----ATCG--AGTTGTAACTTATA--------------C-A------T--GTGTATC-----ATGTTT-------ATATT-T-AA-TT--GTA-TTAT----AAACACTGCACCACTTTGGTA-CATGTGTGCTAAAATATTTATGTT--T--GA--AAGGATTTACTGATCAATTACTAC---TACAATG-AT----CTGT-G-G-G-AGTA-TA------TATTGAATTTTTACAGTGTAG--------A-AGA------T--T-TT-AT-TCTTTTTGATTTGCAATTGATTTCTATCAATGACTAT
gi|14 : T-TAGACTTAAAT----ATTC--AGTGATAAC--ATA--------------T-A------T--T----TC-----ATATTA-------ATATT-T-AA-TA--TTA-TTAC----AAACACTGCACCACTTTG-TA-CCTGTGTGCTAACATATTTATTTT--A--AA--AATGATTTGCTCATCAATTGCTAC---TACAATG-AC----C--TAG-G-G-AGAA-TA------TATTGCATTTGAACAGTGTAGG--C-TTAA-ACA------AT-T-TT-AT-TTCATTTAATTTATAATTGATTTCTATCAATAACCATGGACTCG-----TTTTTCAG-TTAAACGCg
gi|15 : aacACTTTTA-CAATGGTCATATACTCG-----TTATTGAGTTTAAATGCTTTGT--AC-ATATGAACAGACAGGTTTCT----TTT-AA-ATTGTTTGCTGTCAGTTTGTAACAATTCAATAG-TTTTAAACAT--TTCGGTTTATATAAAAAATAACTTTTAAAATATATAG
gi|16 : ttttaagtttaaaaaaatagaagtctaattagttttgtttttaacaataattaatgtgaaatccgatcactgtataatgtggtgctaattcaaC--ATA--------------T-A------T--A----TC-----A---------------TA-T-AACTA--GT--TTA---------ACTGCACCACTTGGGTTTCTT-----------TATTTATTTT--G--AA--AAGGATTTGCTCATCATTTACTAC---GATACTG-TT----C--TAG-G-G-TCTA-TACATGTCTATTGCATTTTAACAGTGTATA--C-T----------------T-TT-AT-ACAATTTTATTTACATTTGATTTCTATTCATAACCATAGACTCG-----TTTCTCAGTTTAAACGCTTTGT--AT-ATGTAAACAGACATGTTTTT----T------AT-GTTTGCTGTCA
gi|17 : TAT---TATAATG-AA----C--TAG-G-G-AGTA-TA------TATTACTTTTCAACAGTGTATT--T-TTAT-ACA------AC-T-TT-AT-T-CATTTTATTATCAATGAAGTCCTATCTATGACCATAAACTTG-----TTTTTCAGCTGAAACGCTTTGT--AC-TTGTAAACA--------------------------TTTGCTGTCTGTTTGTAATAGTTCAATAG-AGTTAAACATACTTGGGTTGATATAATAA-TAACTTTTAGAATATATAGGTC-TG---------TGTTTAAACGACAAACAAATAaa
gi|18 : GAACTGAA--CA----G--TTT-------------T-----AAT--T-G------GTACAT-TATACAACATAA---ACTGAAA--------G-GT----CATTATGGCG---CGTG--ATCAAACATTTCACAATATTGTTACTACAAATATACAT-TAAATGACAGATA-TAATTACCGATTT-ATAACATAAAT-----TTT--GATTGTGAA--AGA--------------T-C------T--G----TC------------------ATAT--T-AA-TACGGTA-TT
gi|19 : aataca----T--TTT-------ATTTCGT-----AATA-T-A------GAACAG-TGTACAACAT-------------------------------TATTACC---TCTG--ATCAAACATTTCAGAATATTATTATTACAAACATACAT-TAAATGACGGATA-TAATTATTAATTT-CAAACATGCAG----ATTG--GGTTGTAAT--ATA--------------T-A------T--G----TC-----ATATGCTATATTAATATT-T-AA-TA--GTAATCAT----AAACACTGCACCACTGCGGTA-CCTGTGTGCTAACATATTTATTTT--A--Atgccattggtaatgatacgttctctattcattatatcctagatccacatatggctgaga
gi|2 : attGAACAGAA--CG----T--TTTTT-----ATTTCGT-----AATA-A-A------GTACAC-CTTACCATATAA---TT--AAA------T---GTACAACATTATGACT---CGTG--ATTAATCAGTTCAGAATATTGTTATTACGCATATATAA-TAAATGGCGGATA-TAATTACTGATTT-C-AACATATAT----ACCA--GTATGT--C--ATA--------------T--------T--G------------------------ATATT-T-AA-TA--CCA-TAACAA--AAACACTGCACCACTTCAGTGCCTGGGGTTCTAACATATTTTTTTTTAA--AA--AAAGATTTACTCATTAATTATT-T---TACAATGAAT----T--G-G-G-G-AGTG-TA------CATTGCATTTCAACAGTGTATA--C-TTTA-AT----------T-TT-AT-TTCCCT--------------TTTCTATCAATGACCATA------------TTTTAAGTTTAAACGCTTTGC--AT-ATATAAACAGACATGTTTCT----TAT-A-------------TCAGTTTGTAACAGTTATACAC-TTTTAAACAAACATAGGTTGATATAATAA--GACCTCTAATTTATATAGGCC-CCA--AGTCCTTATGTAAACGACATTCAAATAAAA-AATGATACTCGTCCTCT
gi|21 : AACAAAA--CA----T--CTTTA-----ATTTCGT-----AATA-C-A------GTACAT-TGTACAACATAA---TTTAAAATACTAGTAG-GT----CATTATGACC---CGTA--ATCAAACATTTCAGAATATgatgaaacagcatgagacata
gi|22 : aaaaa--TTT-------ATTTTGT-----A-TA-T-A------GTATAT-TGTACAACATCA---TTTGAAA------TAG-GT----CATTAAGACA---TATA--ATCAAACATTTCAGAATATTGTTGTTACAAATATACAT-TAAATGACCAATA-TAATTACTGATTT-CAAAGGTAATG----ATTGCATGTTGCAGG--ATG--------------T-A--------------CC-----A------------GTATG-TAGA-TA--aacatatatctgcttgattaagagtttagtttaaaataaatcatagttgcatgtacccttttggaggaataatatactttgtgctatacacattttctatatacgat
gi|23 : cACAGAA--CA----A--ATT--------TTTCGA-----AATA-T-A------GTACAT-TGTACAAGATAAACATATGAAA------CAG-GT----CATAATGACC---CATG--ATCAAATATTTCAGAATATTGATATTACAAATATAAAC-TAAATGACGGATA-TGATTAGTAGTTT-AACACATACAT----ATTG--GGTTGTAAC--ATA--------------T-G------T-------CC-----C------------ATATA-T-GA-TA--TTA-ATAttttgctaaaaattaaatcttaaaaac
gi|24 : ctGAA--CAAG--T--ATT-------ATTTCGT-----AATA-A-A------GAACAT-TGTACAACATAA---ATTGAAA------AA------------------------------AAATATTTCAGAGTACTGTTATTACAA-TAAACAT-TAAATGACGGATA-TAATTACTGATTT-CAAATACAGAG----ATTG--GGTCGTTTC--AGA--------------T-A------T--G----CC------------------ATATGAT-AA-TAT-ATA-TTAC----Atttaa
gi|26 : ATAAACATG-----TTTTCCAGTTTAAATGTTTTGTTTAT-ATATAAACAAACAGGTTTCT----TAT-AA-TTTGTTTGCTGTCAGTTTGTAACATTTCAATAG-TTATAAACAAACTTGGGTTGATATAATctgt
gi|27 : gatgtctatatttaaaaagGAACAGAA--CA----TATTTC-------ATTTCGT-----AATG-T-A------GTAAAT-T
gi|27 : ca----T--TTT-------ATTTCGT-----AATA-T-A------GTACAC-TGTAAAACATAA---TTTGAAA------TAA-GT----CATTATGACC---CGTG--AT-AAACATTTCAGAATAATATTATTACAAATATACcttttatttcgtaatatagtacactgtaaaacataatttgaaataagtcattatgacccgtgataaacatttcagaataatattattacaaatatact
gi|29 : cagaacagaacatatttcatttcgtaatgtagtaaattcATATACAT-AAAATAGCGGATA-GGATTACTGGTTT-CAAATATAAAG----A-TG--GATTGTTAC--ATA--------------T-A------T--G----CC------------------ATGT--T-CA-TA--GTA-t
gi|3 : ACAGAA--CA----TCTTTT-------ATATCGT-----CATA-T-A------GTAAAT-TGCACAACATAA---TTTAAAA-------AA-GT----CATCATAACC---CGTG--AGCAAACATTTCAGAATATTA-------AAATATACAT-TTAGTGTTGGATA-TTACTACTGATTT-CAAACATAAAG----ATAA--GGTTGTAAC--ATA--------------T-ACATGTAT--G----T-------------------ATAT--T-GA-TA--GTA-TTTC----AAACACTGTACCACTTTGGTAT-ATGTGTTCTAACATGTTTATTTT--A--CA--AAGGATTCAGTCATCAATTAATGT---TACACTG-AT----C--T-G-GAG-AGTA-TA------TATTGCATAT-AACAATGTATA--CATCAATACA------A--T-TTTAT-TTCATTTGATTGACAATTGATTTCTATCAATGCCCATTGACTCGGGGTTTTTTTCAATTTAAGCTCTTTAT--AT-ATGTGAACAGACATGTTTTGACAATAT-AT-AT-GTTTGCTGTCAATGTGTAACAATTCAATAA-TTTTAAACATACTTGGATTAATATGATGA-TAAC-TTTAAAATATGTATGTC-TTG--AGTGCTTGTcatgtcgcaatgtgttgattttatactaaa
gi|30 : agt--TTC-------ATTTCA------AATA-C-A------GTTCAT-TGTA-----TCA---TTAGAAA------TAG-AT----CATTATGACC---CATG--ATCAAACATGTCAGTATAATGTTAACACAAAGTTACA
gi|32 : ttcCAGGA--CA----T--TTT-------ATTTTTTTTATCAATAAC-A------GTACAT-TGTACAGTATCA---TTTGAAA------TAA-AT----CATTATGACC---C-TGATATCAAAAATCCCAgtcgggaatgtgt
gi|33 : atatacatagagggATACGCGCTCTCTAGAACTCCGCATGTATTACATAATC------GTTCTTt
gi|34 : AACTAAA--CACTTTT--TTT-------ATTTCGT-----AATA-T-ACATGTAGTACAT-TGGACAATATAA---TTTGAAA------CAA-GT----CAagaaaggtgtcctccgttgcttccatttacccttttatacctcaagcacatg
gi|35 : aaGAACTAAA--CA----TCTTTT-------ATTTCGT-----AATA-A-A------GTACATCTG-ACAATACAA---TTTGAAA------CAA-GT----C
gi|36 : caGAACTGAA--CA----T--TTTTTCTTTTATTTCGT-----AATA-T-A------GTA
gi|4 : aacaACATAA---TTCGAAA------ATG-GT----TATTTTGACC---TGTG--ATCAAACATTTCCCAATATTGTTATTACAAATATACAT-TAAATGACGGATA-TAATTACTGATTCACAAACAAAAAG----ATTG--GGTTGTAAT--TTA--------------T-A------T--G----TCATATTA------------ATATT-T-GA-TA--GTA-TTAC----AAACACT-CACCCCTTTGGTA-CCTGTGTGCTAACATATTTATTTT--T--AA--AAGGATTAACTAATCAAT------------------T----C--T-GTG-G-AGTA-TA------TATT-CGTTTTAATAGTGTAGA--C-TTAA-ACA------A--CGTT-AT-TTCATTTGATATACTTTTGATTTATATCGATGACCATAGATTCG-----TTTTTCAGTTTAAACGCTTTGT--AT-ATATAAACAGACAGGTTTCT----TAT-AATGT-GTTTACT-TCAGTGTGTATCAATTTTATCGTTTTTTAACATACTTGGGTTGATATAATAT-TAACTTTTAAATTA---------------GCCCTTGTATAAACGACATTTAAATAAAA-AATGATACTCGTCCTCCAAAA
gi|5 : AAATATTGAC-TAAATGACGGATAATATTTACTGATT------------G----ATTG--GATTGAAAT--ATA--------------T-A------T--G----TC-----A-------------TAT--T-AA-TA--GCA-ATAC----AAACAGTGCATCACTTTGGTATCTT-TATGTTAACATTTTTATTTA--A--AATTAATATTTTACTCATCAATTGCTAT---TACAATG-AT----C--T-A-G-G-GATAATG------TATTCCATTTTAACAGTGTATG--C-TAAA-ACACACGTAAGTT-TT-AT-TTCGTTTGATTTACAATTTATTTATATCGATGACCATATACTAG-----TTTGTCAGTTTAAACGCTTTGT--ATAATG----CAAACATGCTTCT----AAT-AC-AC-AGTTGCTGTCAGTTTGTAGCGGTTCAATAG-TTTTAAACATACGTGGGCTGGTATTATA--------CTAAAATATATAGGTA-TTA--CGTTCTTGTACAAATAACATTCAAGTAAAATAATGATACTCTTCCTCTAGAACTCGGCACATATTACATA
gi|6 : tcattatagaaGAACAGAA--CA----T--TTTTT-----ATTTCGT-----AATA-TTAT-----ATACAT-AGTACAACTTAA---TTGGAAA------TCG-GT----CATTATGATCACACATT---TCATACATTTCA-AACATT---AATACAAATATACAT-TAAATGACGGATA-TAATTACTGATTT-CAAATTTAAAG----ATTG--GGTTGTTAC--ATAT-------------T-A------T--C----TT------------------ATAT--T-AA-TA--GTA-TTAT----TAACATTACATCACTTTGGTATC-TATGTTC-------TCTGTTCT--C--AG--------TTAC--------TACTACATGTACAATG-AT----C--GAG-G-G-AATA-TA------TATTGCATTTTAA
gi|7 : gGAACAGAA--CA----TCTTTT-------ATTTTGT-----AATA-T-A------GTATGT-TGCACAACATTA---TTTGAAA------TAA-GT----CATTATGACC---CGTG--ATCAAACATTTCAGAAAATTGTTATTACAAATATACAT-TAAATGATGTGTA-AAATTACTGATTT-CAAACATAAAG----TTAG--GGTTCTAAG--ATA--------------TAA------TAAG----TC-----A------------A-AT--T-AA-CA--GTA-TTACAATTAAACACTGTACCACTTTAGTATC-TGTGTGCTAACATATTTATTAT-----AA--AAGGATTTACGTGTCAATT--TAC---TACCATG-ATGCAAT--G-G-G-G-AGTA-TA------TATTGCAATTTGACAGTGTATC--C-TTAA-ACA------AT-T-TT-AT-TTCATTTGA-TTATATTTAATTTCTATCAATGAgaatacccctctatatttttgtagttgacttattgtgcaatatgtgtattttatagaattacaaccatgttgctttctgttggtttatattttaaatgattattttattaaataatttacacagccaagt
gi|8 : caGAACTGAAA-TA----T--GTT-------ATTTTGT-----AATA-C-T------GTAGAT-TGTACAACGTAA---CTTAAAA------TAA-TT----CATAATGACC---AGTG--ATCAAACATTTAAAAAAAGTGTTATTACAAATAAACAA-TAAATGACAAATA-TAATCACTGATTT-CAAACATAAAG----ATTG--GGTTGTAGC--ATA--------------T-A------T--G----TCATGTAA------------ATATT-T-AA-AA--GTA-TTAC----AAACACTGCACCACTTTGGCA-CATGTGTGCTAAAAT-CTTA------A--AA--AAAGATTTACTCATCGATTACTAC---AACAAAG-AT----C--T-G-G-GTAGTA-TA------TATTGCATTTTAACAGTGCTGA--T-TTAA-ACA------A--T-T---T-TTCATTTGGTTGACAATTAATTTCTCTCAATGACCt
gi|9 : aaaAACAGAA--CA----TATTTT-------ATTTCGT-----TATA-T-A------GTACAT-TGAACAACATAA---ATTGAAA------AAAAGT----CATTTTAACC---CGTG--ATTCAACATTTCACAATATTATTATAACAAATATACAT-CTATTGATTGATA-TAGTTATTGTTTA-TAAATATATAGATATATTG--GGTTGTAAC--ATATATACGGCATATATT-A------T--A----TT-----A------------ATATG-T-TA-TA--GAA-TTAT----AAACACTGCACCACTTTGGTATC-TGAGTGCTAACATATTTATTTT--A--AA--AAAA---TACTCCTCAGTTACTAC---TACAAAG-AT----A--TGG-G-G-AGTA-TA------TATTGCATTTTAACAGTGTATA--A-TTtat
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TTAAAACATATTGCAAGTTTTATAAATTCATTGCCCGTTACTATTTATATGTTTATTTATACTAACAATTGATAATTAATATTAACATTATTGCATAGATGTTTTCTTAAGCTATGTTTGTATGTACGTTTATAACATGTCGCAATTATGGTATGATGAAATAGAAATTTTGTATATTGATGCTTATGCTGTTCATTTGAACCAAAGTGTAAATAAAAGAA
Unaligned ( gi|25 ): TAAATTGAGAATCATTAAACAATAATTTATTACATAGCCATTTCCTTCAGCTATGATTGTATTTACGTTTGTTACATGTCGCCATTATGTCAGGATGATATAGAAATGTGTATATTGATACTTATGCTGTAAATATGAACCTAACATTAAAT
Unaligned ( gi|28 ): ATTTTTTTAGAAACATATATATAAACGTTTATTACATGTCGCCATTATGTTATGATAATATAGAAATTTGCATAGTTATGCTTTTGCTGTTCATATGAACCTAAGTGTAAATAAATAACTGAA
Unaligned ( gi|31 ): TTATGTATATGTATTACATGTCGCCATTACGTTATACTTAAATTGAAACTTGTACATTTGATGCTAATGTTGTTCATATGAAAATAAGTGTAAATAAAGAATT
Unaligned ( gi|37 ): AACAAAACACAACATTGCACAACACATGCAACGCAA
Unaligned ( gi|38 ): CATGTACCTTAAGTTTCCATAACATGCAATTTC
Alignments
lowQualScore : 1111111 1111111 4444444444444444444444444444444 111 1111 22222222222 22222222222222 22222222222222 1 222222
lowQualScore : 55 5555555 3333333 44444 222 777777 1 333 8888888888 4444 333 22 0 0 2 2 2 0 4444 888888888 1 55 1 1 555555 5555555555555555555555555555555 44 3 66 888888 8888 444 3 888 33 0 1 444 2 5555 7777 5 2 2 2 777777 999999 2 11111111111 5 2 2 0 0 3 99999 66 4 2 44444444444444 1 5 888 5 1 1 00000000000000 0 3 0 999999
lowQualScore : .. ....... ....... ..... ... ...... . ... .......... .... ... .. . . . . . . .... ......... . .. . . ...... ............................... .. . .. ...... .... ... . ... .. . . ... . .... .... . . . . ...... ...... . ........... . . . . . . ..... .. . . .............. . . ... . . . .............. . . . ......
lowQualScore : 33 5555555 4444444 55555 111 000000 9 333 9999999999 0000 555 66 4 4 1 1 0 4 2222 000000000 8 22 9 9 555555 0000000000000000000000000000000 55 8 88 222222 2222 888 5 222 77 5 1 444 5 3333 4444 0 5 5 5 222222 555555 9 11111111111 7 9 9 7 3 5 11111 11 4 6 77777777777777 1 0 999 7 7 4 55555555555555 0 7 7 000000
consensus : GAACAGAA--CA----T--TTT-------ATTTCGT-----AATA-T-A------GTACAT-TGTACAACATAA---TTTGAAA------TAG-GT----CATTATGACC---CGTG--ATCAAACATTTCAGAATATTGTTATTACAAATATACAT-TAAATGACGGATA-TAATTACTGATTT-CAAACATAAAG----ATTG---------GGTTGTAAC--ATA-T-A------T--G----TC-----A------ATA-------T--T-AATA--GT------ATTAC----AAACACTGCACCACTTTGGTATCNTGTGTGCTAACATATTTATTTT--AAA--AAGGATTTACTCATCAATTACTAC---TACAATG-AT----C--T-G-G-G-AGTA-TA------TATTGCATTTTAACAGTGTANA--C-TTAA-ACA------A--T-TT-AT-TTCATTTGATTTACAATTGATTTCTATCAATGACCATAGACTCG-----TTTTTCAGTTTAAACGCTTTGT--AT-ATGTAAACAGACANGTTTCT----TAT-AA-AT-GTTTGCTGTCAGTTTGTAACAGTTCAATAG-TTTTAAACATACTTGGGTTGATATAATAA-TAACTTTTAAAATATATAGG-TC-TNA-GTC---CTTGTATAAACGACATTCAAATAAAA-AATGATACTCGTCCTCTAGAACTCGGCACGTATTACATAATCACGCTAGTTCTT
Reference ( family-4809 ) : GAACAGAA--CA----T--TTT-------ATTTCGT-----AATA-T-A------GTACAT-TGTACAACATAA---TTTGAAA------TAG-GT----CATTATGACC---CGTG--ATCAAACATTTCAGAATATTGTTATTACAAATATACAT-TAAATGACGGATA-TAATTACTGATTT-CAAACATAAAG----ATTG---------GGTTGTAAC--ATA-T-A------T--G----TC-----A------ATA-------T--T-AATA--GT------ATTAC----AAACACTGCACCACTTTGGTATCNTGTGTGCTAACATATTTATTTT--AAA--AAGGATTTACTCATCAATTACTAC---TACAATG-AT----C--T-G-G-G-AGTA-TA------TATTGCATTTTAACAGTGTANA--C-TTAA-ACA------A--T-TT-AT-TTCATTTGATTTACAATTGATTTCTATCAATGACCATAGACTCG-----TTTTTCAGTTTAAACGCTTTGT--AT-ATGTAAACAGACANGTTTCT----TAT-AA-AT-GTTTGCTGTCAGTTTGTAACAGTTCAATAG-TTTTAAACATACTTGGGTTGATATAATAA-TAACTTTTAAAATATATAGG-TC-TNA-GTC---CTTGTATAAACGACATTCAAATAAAA-AATGATACTCGTCCTCTAGAACTCGGCACGTATTACATAATCACGCTAGTTCTT
gi|1 : GAACAGAA--CA----T--TTT-------GTTTCGT-----AATA-T-A------GCACAT-TGTATAACATAA---TTTGAAA------TAG-GT----CATACTGACC---CGTA--ATCAAATGTTTCATAATATTGATATAACAATTATACTTATAAGTGAGTGATA-TAACTACTGCTGT-CAAACATCAAG----ATTT---------GGTTGTAAC--ATA-T-A------T--G----TC-----A------ATACG-----T--T-A-TA--GT------ATTAC----ACTAACTGCAGCACCTTGGTTTCAT-TGTGCTAACATATTTATTTT--AAA--ACTGGTTTACTCATCAATAACTAC---TACACTG-AT----C--T-G-G-G-AGTA-TA------TATCGCATTTTGACAGTGAAGA--C-TTAG-ATT------A--T-TT-AT-TTCTTTTAATTTACAATTATTTTCTGTCTATAACCATAGACTCG-----CTTTTCAGTTTAAACGCTTTGT--AT-ATGTAAAGTGACAGGTTTCT----TATAAA-AT-GTCTGCTGTCAGTTTATAAAAATTCATTAG-TTTTAAACATACTTGGGTTGATATAGTCA-TAACCTTTACTATACA-AGG-TCGTAA-GTCGTTTTTGTATAGACGGCATTAAACTAAAA-TATGATACCCGTCCTCTAGAACTCAGCATGTATTACATAATCACGCTAGTTCTT
gi|10 : GAACAGAAGGTA----T--TCT-------ATTTCGT-----AATA-T-A------GTACAT-TGTACA---TAA---ATCTAAA------TAG-GT----CATTCTGACC---CGTG--AT-AAACATTTCAGAATA---------------------------ACGGATA-AAATTACTGATTT-TCAATATAAAG----ATAG---------GGCTGT------TA-C-A------T--G----TC-----G-------TA-------T--C-AATA--GT------AT-----------ACTG--------TGGTA-CATGTGTGCTAAAATATTTATTCT--AAA--AAGGATTTACT-----------GC---TATAAGG-AT----C--T-ATG-G-TGCA-TA------TACTGCAGTTAAACAGTGTATAATT-TTAA-A-G------T--T-TT-GTATTCATCATATTTACAATTTATTTCTTTCCATGACTATAAACTCG-----TTTTTTAATTT
gi|11 : caTGACA---CGTG--ATCAAACATTTCAGAATATAGCTATTACAAATATACAT-ACTATTACGGATA-TAATTACTGATTT-CAAACATAAAG----ATCG---------AGTTGTAACTTATA-C-A------T--GTGTATC-----ATGTTT-ATAT------T--T-AATT--GT------ATTAT----AAACACTGCACCACTTTGGTA-CATGTGTGCTAAAGTATTTATGTT--TGA--AAGGATTTACTTATCATTTACTAC---TACAATG-AT----CTGT-G-G-G-AGTA-TA------TATTGCATTTTTACAGTGTAG--------A-AGA------T--T-TT-AT-TCTTTTTGATTTGCAATTGATTTCCACCACTGACTAT
gi|12 : GAACAGAA--CA----TCTTTT-------ATTACGT-----AATA-A-A------GTACAT-TGTACAATATTA---TTTGAAA------TAG-GT----TATTATAATT---CATG--ATCAAACATTTCAGAATA---TTATTACAAAAACCCAT-TAAATAAC--ATA-GTATTAC---TTT-CAAACATA----------C---------GGTT---AC--AT--T-A------T--A----TC-----A------GTA-------TG-T-AATA--GT------ATTAC----AAATACTAC-----------ATCGT---TGCCAACATATTAATCTTAGAAA--AAGGATTTAGTCATCAATAACTAC---TATAATG-AT----C--TAG-G-G-AGTA-CA------TATGACATTTTAACAGTGTAGA--T-GTAA-ACA------A--TATT-AT-CTCATTTGgtcatcc
gi|13 : ataGTG--ATCAAACATTTCAGAATATAGCTATTACAAATATACAT-AATATTACGGTTA-TAATTACTGATTT-CAAACATAAAG----ATCG---------AGTTGTAACTTATA-C-A------T--GTGTATC-----ATGTTT-ATAT------T--T-AATT--GT------ATTAT----AAACACTGCACCACTTTGGTA-CATGTGTGCTAAAATATTTATGTT--TGA--AAGGATTTACTGATCAATTACTAC---TACAATG-AT----CTGT-G-G-G-AGTA-TA------TATTGAATTTTTACAGTGTAG--------A-AGA------T--T-TT-AT-TCTTTTTGATTTGCAATTGATTTCTATCAATGACTAT
gi|14 : T-TAGACTTAAAT----ATTC---------AGTGATAAC--ATA-T-A------T--T----TC-----ATATTA-ATA-------T--TTAATA--TT------ATTAC----AAACACTGCACCACTTTG-TA-CCTGTGTGCTAACATATTTATTTT--AAA--AATGATTTGCTCATCAATTGCTAC---TACAATG-AC----C--TAG-G-G-AGAA-TA------TATTGCATTTGAACAGTGTAGG--C-TTAA-ACA------AT-T-TT-AT-TTCATTTAATTTATAATTGATTTCTATCAATAACCATGGACTCG-----TTTTTCAG-TTAAACGCg
gi|15 : aacACTTTTA-CAATGGTCATATACTCG-----TTATTGAGTTTAAATGCTTTGT--AC-ATATGAACAGACAGGTTTCT----TTT-AA-ATTGTTTGCTGTCAGTTTGTAACAATTCAATAG-TTTTAAACAT--TTCGGTTTATATAAAAAATAACTTTTAAAATATATAG
gi|16 : ttttaagtttaaaaaaatagaagtctaattagttttgtttttaacaataattaatgtgaaatccgatcactgtataatgtggtgctaattcaaC--ATA-T-A------T--A----TC-----A-------TA-------T--A-ACTA--GT-------TTA---------ACTGCACCACTTGGGTTTCTT-----------TATTTATTTT--GAA--AAGGATTTGCTCATCATTTACTAC---GATACTG-TT----C--TAG-G-G-TCTA-TACATGTCTATTGCATTTTAACAGTGTATA--C-TT-----------------TT-AT-ACAATTTTATTTACATTTGATTTCTATTCATAACCATAGACTCG-----TTTCTCAGTTTAAACGCTTTGT--AT-ATGTAAACAGACATGTTTTT----T------AT-GTTTGCTGTCA
gi|17 : TAT---TATAATG-AA----C--TAG-G-G-AGTA-TA------TATTACTTTTCAACAGTGTATT--T-TTAT-ACA------AC-T-TT-AT-T-CATTTTATTATCAATGAAGTCCTATCTATGACCATAAACTTG-----TTTTTCAGCTGAAACGCTTTGT--AC-TTGTAAACA--------------------------TTTGCTGTCTGTTTGTAATAGTTCAATAG-AGTTAAACATACTTGGGTTGATATAATAA-TAACTTTTAGAATATATAGG-TC-TG----------TGTTTAAACGACAAACAAATAaa
gi|18 : GAACTGAA--CA----G--TTT-------------T-----AAT--T-G------GTACAT-TATACAACATAA---ACTGAAA--------G-GT----CATTATGGCG---CGTG--ATCAAACATTTCACAATATTGTTACTACAAATATACAT-TAAATGACAGATA-TAATTACCGATTT-ATAACATAAAT-----TTT---------GATTGTGAA--AGA-T-C------T--G----TC------------ATA-------T--T-AATACGGT------ATT
gi|19 : aataca----T--TTT-------ATTTCGT-----AATA-T-A------GAACAG-TGTACAACAT-------------------------------TATTACC---TCTG--ATCAAACATTTCAGAATATTATTATTACAAACATACAT-TAAATGACGGATA-TAATTATTAATTT-CAAACATGCAG----ATTG---------GGTTGTAAT--ATA-T-A------T--G----TC-----ATATGCTATATTAATATT--T-AATA--GTA-----ATCAT----AAACACTGCACCACTGCGGTA-CCTGTGTGCTAACATATTTATTTT--AAtgccattggtaatgatacgttctctattcattatatcctagatccacatatggctgaga
gi|2 : attGAACAGAA--CG----T--TTTTT-----ATTTCGT-----AATA-A-A------GTACAC-CTTACCATATAA---TT--AAA------T---GTACAACATTATGACT---CGTG--ATTAATCAGTTCAGAATATTGTTATTACGCATATATAA-TAAATGGCGGATA-TAATTACTGATTT-C-AACATATAT----ACCA---------GTATGT--C--ATA-T--------T--G------------------ATAT------T--T-AATA--CC------ATAACAA--AAACACTGCACCACTTCAGTGCCTGGGGTTCTAACATATTTTTTTTTAAAA--AAAGATTTACTCATTAATTATT-T---TACAATGAAT----T--G-G-G-G-AGTG-TA------CATTGCATTTCAACAGTGTATA--C-TTTA-AT----------T-TT-AT-TTCCCT--------------TTTCTATCAATGACCATA------------TTTTAAGTTTAAACGCTTTGC--AT-ATATAAACAGACATGTTTCT----TAT-A-------------TCAGTTTGTAACAGTTATACAC-TTTTAAACAAACATAGGTTGATATAATAA--GACCTCTAATTTATATAGGCCC-CAA-GTC---CTTATGTAAACGACATTCAAATAAAA-AATGATACTCGTCCTCT
gi|21 : AACAAAA--CA----T--CTTTA-----ATTTCGT-----AATA-C-A------GTACAT-TGTACAACATAA---TTTAAAATACTAGTAG-GT----CATTATGACC---CGTA--ATCAAACATTTCAGAATATgatgaaacagcatgagacata
gi|22 : aaaaa--TTT-------ATTTTGT-----A-TA-T-A------GTATAT-TGTACAACATCA---TTTGAAA------TAG-GT----CATTAAGACA---TATA--ATCAAACATTTCAGAATATTGTTGTTACAAATATACAT-TAAATGACCAATA-TAATTACTGATTT-CAAAGGTAATG----ATTGCATGTTGCAGGATGTACC--A-G-T-A------T--G----TA-----G------ATA-------T--T-aacatatatctgcttgattaagagtttagtttaaaataaatcatagttgcatgtacccttttggaggaataatatactttgtgctatacacattttctatatacgat
gi|23 : cACAGAA--CA----A--ATT--------TTTCGA-----AATA-T-A------GTACAT-TGTACAAGATAAACATATGAAA------CAG-GT----CATAATGACC---CATG--ATCAAATATTTCAGAATATTGATATTACAAATATAAAC-TAAATGACGGATA-TGATTAGTAGTTT-AACACATACAT----ATTG---------GGTTGTAAC--ATA-T-G------T--C----CC-----ATATATGATA-------T--T-AATA--ttgctaaaaattaaatcttaaaaac
gi|24 : ctGAA--CAAG--T--ATT-------ATTTCGT-----AATA-A-A------GAACAT-TGTACAACATAA---ATTGAAA------AA------------------------------AAATATTTCAGAGTACTGTTATTACAA-TAAACAT-TAAATGACGGATA-TAATTACTGATTT-CAAATACAGAG----ATTG---------GGTCGTTTC--AGA-T-A------T--G----CC------------ATA-------TGAT-AATAT-AT------ATTAC----Atttaa
gi|26 : ATAAACATG-----TTTTCCAGTTTAAATGTTTTGTTTAT-ATATAAACAAACAGGTTTCT----TAT-AA-TTTGTTTGCTGTCAGTTTGTAACATTTCAATAG-TTATAAACAAACTTGGGTTGATATAATctgt
gi|27 : gatgtctatatttaaaaagGAACAGAA--CA----TATTTC-------ATTTCGT-----AATG-T-A------GTAAAT-T
gi|27 : ca----T--TTT-------ATTTCGT-----AATA-T-A------GTACAC-TGTAAAACATAA---TTTGAAA------TAA-GT----CATTATGACC---CGTG--AT-AAACATTTCAGAATAATATTATTACAAATATACcttttatttcgtaatatagtacactgtaaaacataatttgaaataagtcattatgacccgtgataaacatttcagaataatattattacaaatatact
gi|29 : cagaacagaacatatttcatttcgtaatgtagtaaattcATATACAT-AAAATAGCGGATA-GGATTACTGGTTT-CAAATATAAAG----A-TG---------GATTGTTAC--ATA-T-A------T--G----CC------------ATG-------T--T-CATA--GT------At
gi|3 : ACAGAA--CA----TCTTTT-------ATATCGT-----CATA-T-A------GTAAAT-TGCACAACATAA---TTTAAAA-------AA-GT----CATCATAACC---CGTG--AGCAAACATTTCAGAATATTA-------AAATATACAT-TTAGTGTTGGATA-TTACTACTGATTT-CAAACATAAAG----ATAA---------GGTTGTAAC--ATA-T-ACATGTAT--G----T-------------ATA-------T--T-GATA--GT------ATTTC----AAACACTGTACCACTTTGGTAT-ATGTGTTCTAACATGTTTATTTT--ACA--AAGGATTCAGTCATCAATTAATGT---TACACTG-AT----C--T-G-GAG-AGTA-TA------TATTGCATAT-AACAATGTATA--CATCAATACA------A--T-TTTAT-TTCATTTGATTGACAATTGATTTCTATCAATGCCCATTGACTCGGGGTTTTTTTCAATTTAAGCTCTTTAT--AT-ATGTGAACAGACATGTTTTGACAATAT-AT-AT-GTTTGCTGTCAATGTGTAACAATTCAATAA-TTTTAAACATACTTGGATTAATATGATGA-TAAC-TTTAAAATATGTATG-TCTTGA-GTG---CTTGTcatgtcgcaatgtgttgattttatactaaa
gi|30 : agt--TTC-------ATTTCA------AATA-C-A------GTTCAT-TGTA-----TCA---TTAGAAA------TAG-AT----CATTATGACC---CATG--ATCAAACATGTCAGTATAATGTTAACACAAAGTTACA
gi|32 : ttcCAGGA--CA----T--TTT-------ATTTTTTTTATCAATAAC-A------GTACAT-TGTACAGTATCA---TTTGAAA------TAA-AT----CATTATGACC---C-TGATATCAAAAATCCCAgtcgggaatgtgt
gi|33 : atatacatagagggATACGCGCTCTCTAGAACTCCGCATGTATTACATAATC------GTTCTTt
gi|34 : AACTAAA--CACTTTT--TTT-------ATTTCGT-----AATA-T-ACATGTAGTACAT-TGGACAATATAA---TTTGAAA------CAA-GT----CAagaaaggtgtcctccgttgcttccatttacccttttatacctcaagcacatg
gi|35 : aaGAACTAAA--CA----TCTTTT-------ATTTCGT-----AATA-A-A------GTACATCTG-ACAATACAA---TTTGAAA------CAA-GT----C
gi|36 : caGAACTGAA--CA----T--TTTTTCTTTTATTTCGT-----AATA-T-A------GTA
gi|4 : aacaACATAA---TTCGAAA------ATG-GT----TATTTTGACC---TGTG--ATCAAACATTTCCCAATATTGTTATTACAAATATACAT-TAAATGACGGATA-TAATTACTGATTCACAAACAAAAAG----ATTG---------GGTTGTAAT--TTA-T-A------T--G----TC-----ATATTA-ATA-------T--TTGATA--GT------ATTAC----AAACACT-CACCCCTTTGGTA-CCTGTGTGCTAACATATTTATTTT--TAA--AAGGATTAACTAATCAATT----------------------C--T-GTG-G-AGTA-TA------TATT-CGTTTTAATAGTGTAGA--C-TTAA-ACA------A--CGTT-AT-TTCATTTGATATACTTTTGATTTATATCGATGACCATAGATTCG-----TTTTTCAGTTTAAACGCTTTGT--AT-ATATAAACAGACAGGTTTCT----TAT-AATGT-GTTTACT-TCAGTGTGTATCAATTTTATCGTTTTTTAACATACTTGGGTTGATATAATAT-TAACTTTTAAA-------------TTA-GCC---CTTGTATAAACGACATTTAAATAAAA-AATGATACTCGTCCTCCAAAA
gi|5 : AAATATTGAC-TAAATGACGGATAATATTTACTGATT------------G----ATTG---------GATTGAAAT--ATA-T-A------T--G----TC-----A-------TA-------T--T-AATA--GC------AATAC----AAACAGTGCATCACTTTGGTATCTT-TATGTTAACATTTTTATTTA--AAATTAATATTTTACTCATCAATTGCTAT---TACAATG-AT----C--T-A-G-G-GATAATG------TATTCCATTTTAACAGTGTATG--C-TAAA-ACACACGTAAGTT-TT-AT-TTCGTTTGATTTACAATTTATTTATATCGATGACCATATACTAG-----TTTGTCAGTTTAAACGCTTTGT--ATAATG----CAAACATGCTTCT----AAT-AC-AC-AGTTGCTGTCAGTTTGTAGCGGTTCAATAG-TTTTAAACATACGTGGGCTGGTATTATA--------CTAAAATATATAGG-TA-TTACGTT---CTTGTACAAATAACATTCAAGTAAAATAATGATACTCTTCCTCTAGAACTCGGCACATATTACATA
gi|6 : tcattatagaaGAACAGAA--CA----T--TTTTT-----ATTTCGT-----AATA-TTAT-----ATACAT-AGTACAACTTAA---TTGGAAA------TCG-GT----CATTATGATCACACATT---TCATACATTTCA-AACATT---AATACAAATATACAT-TAAATGACGGATA-TAATTACTGATTT-CAAATTTAAAG----ATTG---------GGTTGTTAC--ATATT-A------T--C----TT------------ATA-------T--T-AATA--GT------ATTAT----TAACATTACATCACTTTGGTATC-TATGTTC-------TCTGTTCT--CAG--------TTAC--------TACTACATGTACAATG-AT----C--GAG-G-G-AATA-TA------TATTGCATTTTAA
gi|7 : gGAACAGAA--CA----TCTTTT-------ATTTTGT-----AATA-T-A------GTATGT-TGCACAACATTA---TTTGAAA------TAA-GT----CATTATGACC---CGTG--ATCAAACATTTCAGAAAATTGTTATTACAAATATACAT-TAAATGATGTGTA-AAATTACTGATTT-CAAACATAAAG----TTAG---------GGTTCTAAG--ATA-TAA------TAAG----TC-----A------A-A-------T--T-AACA--GT------ATTACAATTAAACACTGTACCACTTTAGTATC-TGTGTGCTAACATATTTATTAT---AA--AAGGATTTACGTGTCAATT--TAC---TACCATG-ATGCAAT--G-G-G-G-AGTA-TA------TATTGCAATTTGACAGTGTATC--C-TTAA-ACA------AT-T-TT-AT-TTCATTTGA-TTATATTTAATTTCTATCAATGAgaatacccctctatatttttgtagttgacttattgtgcaatatgtgtattttatagaattacaaccatgttgctttctgttggtttatattttaaatgattattttattaaataatttacacagccaagt
gi|8 : caGAACTGAAA-TA----T--GTT-------ATTTTGT-----AATA-C-T------GTAGAT-TGTACAACGTAA---CTTAAAA------TAA-TT----CATAATGACC---AGTG--ATCAAACATTTAAAAAAAGTGTTATTACAAATAAACAA-TAAATGACAAATA-TAATCACTGATTT-CAAACATAAAG----ATTG---------GGTTGTAGC--ATA-T-A------T--G----TCATGTAA------ATAT------T--T-AAAA--GT------ATTAC----AAACACTGCACCACTTTGGCA-CATGTGTGCTAAAAT-CTTA------AAA--AAAGATTTACTCATCGATTACTAC---AACAAAG-AT----C--T-G-G-GTAGTA-TA------TATTGCATTTTAACAGTGCTGA--T-TTAA-ACA------A--T-T---T-TTCATTTGGTTGACAATTAATTTCTCTCAATGACCt
gi|9 : aaaAACAGAA--CA----TATTTT-------ATTTCGT-----TATA-T-A------GTACAT-TGAACAACATAA---ATTGAAA------AAAAGT----CATTTTAACC---CGTG--ATTCAACATTTCACAATATTATTATAACAAATATACAT-CTATTGATTGATA-TAGTTATTGTTTA-TAAATATATAGATATATTG---------GGTTGTAAC--ATA-T-A------TACG----GC-----ATATATTATA-------T--T-AATAT-GTTATAGAATTAT----AAACACTGCACCACTTTGGTATC-TGAGTGCTAACATATTTATTTT--AAA--AAAA---TACTCCTCAGTTACTAC---TACAAAG-AT----A--TGG-G-G-AGTA-TA------TATTGCATTTTAACAGTGTATA--A-TTtat
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TTAAAACATATTGCAAGTTTTATAAATTCATTGCCCGTTACTATTTATATGTTTATTTATACTAACAATTGATAATTAATATTAACATTATTGCATAGATGTTTTCTTAAGCTATGTTTGTATGTACGTTTATAACATGTCGCAATTATGGTATGATGAAATAGAAATTTTGTATATTGATGCTTATGCTGTTCATTTGAACCAAAGTGTAAATAAAAGAA
Unaligned ( gi|25 ): TAAATTGAGAATCATTAAACAATAATTTATTACATAGCCATTTCCTTCAGCTATGATTGTATTTACGTTTGTTACATGTCGCCATTATGTCAGGATGATATAGAAATGTGTATATTGATACTTATGCTGTAAATATGAACCTAACATTAAAT
Unaligned ( gi|28 ): ATTTTTTTAGAAACATATATATAAACGTTTATTACATGTCGCCATTATGTTATGATAATATAGAAATTTGCATAGTTATGCTTTTGCTGTTCATATGAACCTAAGTGTAAATAAATAACTGAA
Unaligned ( gi|31 ): TTATGTATATGTATTACATGTCGCCATTACGTTATACTTAAATTGAAACTTGTACATTTGATGCTAATGTTGTTCATATGAAAATAAGTGTAAATAAAGAATT
Unaligned ( gi|37 ): AACAAAACACAACATTGCACAACACATGCAACGCAA
Unaligned ( gi|38 ): CATGTACCTTAAGTTTCCATAACATGCAATTTC
Alignments
lowQualScore : 1111111 1111111 4444444444444444444444444444444 111 1111 22222222222 22222222222222 22222222222222 1 222222
lowQualScore : 55 5555555 3333333 44444 222 777777 1 333 8888888888 4444 333 22 0 0 2 2 2 0 4444 888888888 1 55 1 1 555555 5555555555555555555555555555555 44 3 66 888888 8888 444 3 888 33 0 1 444 2 5555 7777 5 2 2 2 777777 999999 2 11111111111 5 2 2 0 0 3 99999 66 4 2 44444444444444 1 5 888 5 1 1 00000000000000 0 3 0 999999
lowQualScore : .. ....... ....... ..... ... ...... . ... .......... .... ... .. . . . . . . .... ......... . .. . . ...... ............................... .. . .. ...... .... ... . ... .. . . ... . .... .... . . . . ...... ...... . ........... . . . . . . ..... .. . . .............. . . ... . . . .............. . . . ......
lowQualScore : 33 5555555 4444444 55555 111 000000 9 333 9999999999 0000 555 66 4 4 1 1 0 4 2222 000000000 8 22 9 9 555555 0000000000000000000000000000000 55 8 88 222222 2222 888 5 222 77 5 1 444 5 3333 4444 0 5 5 5 222222 555555 9 11111111111 7 9 9 7 3 5 11111 11 4 6 77777777777777 1 0 999 7 7 4 55555555555555 0 7 7 000000
consensus : GAACAGAA--CA----T--TTT-------ATTTCGT-----AATA-T-A------GTACAT-TGTACAACATAA---TTTGAAA------TAG-GT----CATTATGACC---CGTG--ATCAAACATTTCAGAATATTGTTATTACAAATATACAT-TAAATGACGGATA-TAATTACTGATTT-CAAACATAAAG----ATTG---------GGTTGTAAC--ATA-T-A------T--G----TC-----A------ATA-------T--T-AATA--GT------ATTAC----AAACACTGCACCACTTTGGTATCNTGTGTGCTAACATATTTATTTT--AAA--AAGGATTTACTCATCAATTACTAC---TACAATG-AT----C--T-G-G-G-AGTA-TA------TATTGCATTTTAACAGTGTANA--C-TTAA-ACA------A--T-TT-AT-TTCATTTGATTTACAATTGATTTCTATCAATGACCATAGACTCG-----TTTTTCAGTTTAAACGCTTTGT--AT-ATGTAAACAGACANGTTTCT----TAT-AA-AT-GTTTGCTGTCAGTTTGTAACAGTTCAATAG-TTTTAAACATACTTGGGTTGATATAATAA-TAACTTTTAAAATATATAGG-TC-TNA-GTC---CTTGTATAAACGACATTCAAATAAAA-AATGATACTCGTCCTCTAGAACTCGGCACGTATTACATAATCACGCTAGTTCTT
Reference ( family-4809 ) : GAACAGAA--CA----T--TTT-------ATTTCGT-----AATA-T-A------GTACAT-TGTACAACATAA---TTTGAAA------TAG-GT----CATTATGACC---CGTG--ATCAAACATTTCAGAATATTGTTATTACAAATATACAT-TAAATGACGGATA-TAATTACTGATTT-CAAACATAAAG----ATTG---------GGTTGTAAC--ATA-T-A------T--G----TC-----A------ATA-------T--T-AATA--GT------ATTAC----AAACACTGCACCACTTTGGTATCNTGTGTGCTAACATATTTATTTT--AAA--AAGGATTTACTCATCAATTACTAC---TACAATG-AT----C--T-G-G-G-AGTA-TA------TATTGCATTTTAACAGTGTANA--C-TTAA-ACA------A--T-TT-AT-TTCATTTGATTTACAATTGATTTCTATCAATGACCATAGACTCG-----TTTTTCAGTTTAAACGCTTTGT--AT-ATGTAAACAGACANGTTTCT----TAT-AA-AT-GTTTGCTGTCAGTTTGTAACAGTTCAATAG-TTTTAAACATACTTGGGTTGATATAATAA-TAACTTTTAAAATATATAGG-TC-TNA-GTC---CTTGTATAAACGACATTCAAATAAAA-AATGATACTCGTCCTCTAGAACTCGGCACGTATTACATAATCACGCTAGTTCTT
gi|1 : GAACAGAA--CA----T--TTT-------GTTTCGT-----AATA-T-A------GCACAT-TGTATAACATAA---TTTGAAA------TAG-GT----CATACTGACC---CGTA--ATCAAATGTTTCATAATATTGATATAACAATTATACTTATAAGTGAGTGATA-TAACTACTGCTGT-CAAACATCAAG----ATTT---------GGTTGTAAC--ATA-T-A------T--G----TC-----A------ATACG-----T--T-A-TA--GT------ATTAC----ACTAACTGCAGCACCTTGGTTTCAT-TGTGCTAACATATTTATTTT--AAA--ACTGGTTTACTCATCAATAACTAC---TACACTG-AT----C--T-G-G-G-AGTA-TA------TATCGCATTTTGACAGTGAAGA--C-TTAG-ATT------A--T-TT-AT-TTCTTTTAATTTACAATTATTTTCTGTCTATAACCATAGACTCG-----CTTTTCAGTTTAAACGCTTTGT--AT-ATGTAAAGTGACAGGTTTCT----TATAAA-AT-GTCTGCTGTCAGTTTATAAAAATTCATTAG-TTTTAAACATACTTGGGTTGATATAGTCA-TAACCTTTACTATACA-AGG-TCGTAA-GTCGTTTTTGTATAGACGGCATTAAACTAAAA-TATGATACCCGTCCTCTAGAACTCAGCATGTATTACATAATCACGCTAGTTCTT
gi|10 : GAACAGAAGGTA----T--TCT-------ATTTCGT-----AATA-T-A------GTACAT-TGTACA---TAA---ATCTAAA------TAG-GT----CATTCTGACC---CGTG--AT-AAACATTTCAGAATA---------------------------ACGGATA-AAATTACTGATTT-TCAATATAAAG----ATAG---------GGCTGT------TA-C-A------T--G----TC-----G-------TA-------T--C-AATA--GT------AT-----------ACTG--------TGGTA-CATGTGTGCTAAAATATTTATTCT--AAA--AAGGATTTACT-----------GC---TATAAGG-AT----C--T-ATG-G-TGCA-TA------TACTGCAGTTAAACAGTGTATAATT-TTAA-A-G------T--T-TT-GTATTCATCATATTTACAATTTATTTCTTTCCATGACTATAAACTCG-----TTTTTTAATTT
gi|11 : caTGACA---CGTG--ATCAAACATTTCAGAATATAGCTATTACAAATATACAT-ACTATTACGGATA-TAATTACTGATTT-CAAACATAAAG----ATCG---------AGTTGTAACTTATA-C-A------T--GTGTATC-----ATGTTT-ATAT------T--T-AATT--GT------ATTAT----AAACACTGCACCACTTTGGTA-CATGTGTGCTAAAGTATTTATGTT--TGA--AAGGATTTACTTATCATTTACTAC---TACAATG-AT----CTGT-G-G-G-AGTA-TA------TATTGCATTTTTACAGTGTAG--------A-AGA------T--T-TT-AT-TCTTTTTGATTTGCAATTGATTTCCACCACTGACTAT
gi|12 : GAACAGAA--CA----TCTTTT-------ATTACGT-----AATA-A-A------GTACAT-TGTACAATATTA---TTTGAAA------TAG-GT----TATTATAATT---CATG--ATCAAACATTTCAGAATA---TTATTACAAAAACCCAT-TAAATAAC--ATA-GTATTAC---TTT-CAAACATA----------C---------GGTT---AC--AT--T-A------T--A----TC-----A------GTA-------TG-T-AATA--GT------ATTAC----AAATACTAC-----------ATCGT---TGCCAACATATTAATCTTAGAAA--AAGGATTTAGTCATCAATAACTAC---TATAATG-AT----C--TAG-G-G-AGTA-CA------TATGACATTTTAACAGTGTAGA--T-GTAA-ACA------A--TATT-AT-CTCATTTGgtcatcc
gi|13 : ataGTG--ATCAAACATTTCAGAATATAGCTATTACAAATATACAT-AATATTACGGTTA-TAATTACTGATTT-CAAACATAAAG----ATCG---------AGTTGTAACTTATA-C-A------T--GTGTATC-----ATGTTT-ATAT------T--T-AATT--GT------ATTAT----AAACACTGCACCACTTTGGTA-CATGTGTGCTAAAATATTTATGTT--TGA--AAGGATTTACTGATCAATTACTAC---TACAATG-AT----CTGT-G-G-G-AGTA-TA------TATTGAATTTTTACAGTGTAG--------A-AGA------T--T-TT-AT-TCTTTTTGATTTGCAATTGATTTCTATCAATGACTAT
gi|14 : T-TAGACTTAAAT----ATTC---------AGTGATAAC--ATA-T-A------T--T----TC-----ATATTA-ATA-------T--TTAATA--TT------ATTAC----AAACACTGCACCACTTTG-TA-CCTGTGTGCTAACATATTTATTTT--AAA--AATGATTTGCTCATCAATTGCTAC---TACAATG-AC----C--TAG-G-G-AGAA-TA------TATTGCATTTGAACAGTGTAGG--C-TTAA-ACA------AT-T-TT-AT-TTCATTTAATTTATAATTGATTTCTATCAATAACCATGGACTCG-----TTTTTCAG-TTAAACGCg
gi|15 : aacACTTTTA-CAATGGTCATATACTCG-----TTATTGAGTTTAAATGCTTTGT--AC-ATATGAACAGACAGGTTTCT----TTT-AA-ATTGTTTGCTGTCAGTTTGTAACAATTCAATAG-TTTTAAACAT--TTCGGTTTATATAAAAAATAACTTTTAAAATATATAG
gi|16 : ttttaagtttaaaaaaatagaagtctaattagttttgtttttaacaataattaatgtgaaatccgatcactgtataatgtggtgctaattcaaC--ATA-T-A------T--A----TC-----A-------TA-------T--A-ACTA--GT-------TTA---------ACTGCACCACTTGGGTTTCTT-----------TATTTATTTT--GAA--AAGGATTTGCTCATCATTTACTAC---GATACTG-TT----C--TAG-G-G-TCTA-TACATGTCTATTGCATTTTAACAGTGTATA--C-TT-----------------TT-AT-ACAATTTTATTTACATTTGATTTCTATTCATAACCATAGACTCG-----TTTCTCAGTTTAAACGCTTTGT--AT-ATGTAAACAGACATGTTTTT----T------AT-GTTTGCTGTCA
gi|17 : TAT---TATAATG-AA----C--TAG-G-G-AGTA-TA------TATTACTTTTCAACAGTGTATT--T-TTAT-ACA------AC-T-TT-AT-T-CATTTTATTATCAATGAAGTCCTATCTATGACCATAAACTTG-----TTTTTCAGCTGAAACGCTTTGT--AC-TTGTAAACA--------------------------TTTGCTGTCTGTTTGTAATAGTTCAATAG-AGTTAAACATACTTGGGTTGATATAATAA-TAACTTTTAGAATATATAGG-TC-TG----------TGTTTAAACGACAAACAAATAaa
gi|18 : GAACTGAA--CA----G--TTT-------------T-----AAT--T-G------GTACAT-TATACAACATAA---ACTGAAA--------G-GT----CATTATGGCG---CGTG--ATCAAACATTTCACAATATTGTTACTACAAATATACAT-TAAATGACAGATA-TAATTACCGATTT-ATAACATAAAT-----TTT---------GATTGTGAA--AGA-T-C------T--G----TC------------ATA-------T--T-AATACGGT------ATT
gi|19 : aataca----T--TTT-------ATTTCGT-----AATA-T-A------GAACAG-TGTACAACAT-------------------------------TATTACC---TCTG--ATCAAACATTTCAGAATATTATTATTACAAACATACAT-TAAATGACGGATA-TAATTATTAATTT-CAAACATGCAG----ATTG---------GGTTGTAAT--ATA-T-A------T--G----TC-----ATATGCTATATTAATATT--T-AATA--GTA-----ATCAT----AAACACTGCACCACTGCGGTA-CCTGTGTGCTAACATATTTATTTT--AAtgccattggtaatgatacgttctctattcattatatcctagatccacatatggctgaga
gi|2 : attGAACAGAA--CG----T--TTTTT-----ATTTCGT-----AATA-A-A------GTACAC-CTTACCATATAA---TT--AAA------T---GTACAACATTATGACT---CGTG--ATTAATCAGTTCAGAATATTGTTATTACGCATATATAA-TAAATGGCGGATA-TAATTACTGATTT-C-AACATATAT----ACCA---------GTATGT--C--ATA-T--------T--G------------------ATAT------T--T-AATA--CC------ATAACAA--AAACACTGCACCACTTCAGTGCCTGGGGTTCTAACATATTTTTTTTTAAAA--AAAGATTTACTCATTAATTATT-T---TACAATGAAT----T--G-G-G-G-AGTG-TA------CATTGCATTTCAACAGTGTATA--C-TTTA-AT----------T-TT-AT-TTCCCT--------------TTTCTATCAATGACCATA------------TTTTAAGTTTAAACGCTTTGC--AT-ATATAAACAGACATGTTTCT----TAT-A-------------TCAGTTTGTAACAGTTATACAC-TTTTAAACAAACATAGGTTGATATAATAA--GACCTCTAATTTATATAGGCCC-CAA-GTC---CTTATGTAAACGACATTCAAATAAAA-AATGATACTCGTCCTCT
gi|21 : AACAAAA--CA----T--CTTTA-----ATTTCGT-----AATA-C-A------GTACAT-TGTACAACATAA---TTTAAAATACTAGTAG-GT----CATTATGACC---CGTA--ATCAAACATTTCAGAATATgatgaaacagcatgagacata
gi|22 : aaaaa--TTT-------ATTTTGT-----A-TA-T-A------GTATAT-TGTACAACATCA---TTTGAAA------TAG-GT----CATTAAGACA---TATA--ATCAAACATTTCAGAATATTGTTGTTACAAATATACAT-TAAATGACCAATA-TAATTACTGATTT-CAAAGGTAATG----ATTGCATGTTGCAGGATGTACC--A-G-T-A------T--G----TA-----G------ATA-------T--T-aacatatatctgcttgattaagagtttagtttaaaataaatcatagttgcatgtacccttttggaggaataatatactttgtgctatacacattttctatatacgat
gi|23 : cACAGAA--CA----A--ATT--------TTTCGA-----AATA-T-A------GTACAT-TGTACAAGATAAACATATGAAA------CAG-GT----CATAATGACC---CATG--ATCAAATATTTCAGAATATTGATATTACAAATATAAAC-TAAATGACGGATA-TGATTAGTAGTTT-AACACATACAT----ATTG---------GGTTGTAAC--ATA-T-G------T--C----CC-----ATATATGATA-------T--T-AATA--ttgctaaaaattaaatcttaaaaac
gi|24 : ctGAA--CAAG--T--ATT-------ATTTCGT-----AATA-A-A------GAACAT-TGTACAACATAA---ATTGAAA------AA------------------------------AAATATTTCAGAGTACTGTTATTACAA-TAAACAT-TAAATGACGGATA-TAATTACTGATTT-CAAATACAGAG----ATTG---------GGTCGTTTC--AGA-T-A------T--G----CC------------ATA-------TGAT-AATAT-AT------ATTAC----Atttaa
gi|26 : ATAAACATG-----TTTTCCAGTTTAAATGTTTTGTTTAT-ATATAAACAAACAGGTTTCT----TAT-AA-TTTGTTTGCTGTCAGTTTGTAACATTTCAATAG-TTATAAACAAACTTGGGTTGATATAATctgt
gi|27 : gatgtctatatttaaaaagGAACAGAA--CA----TATTTC-------ATTTCGT-----AATG-T-A------GTAAAT-T
gi|27 : ca----T--TTT-------ATTTCGT-----AATA-T-A------GTACAC-TGTAAAACATAA---TTTGAAA------TAA-GT----CATTATGACC---CGTG--AT-AAACATTTCAGAATAATATTATTACAAATATACcttttatttcgtaatatagtacactgtaaaacataatttgaaataagtcattatgacccgtgataaacatttcagaataatattattacaaatatact
gi|29 : cagaacagaacatatttcatttcgtaatgtagtaaattcATATACAT-AAAATAGCGGATA-GGATTACTGGTTT-CAAATATAAAG----A-TG---------GATTGTTAC--ATA-T-A------T--G----CC------------ATG-------T--T-CATA--GT------At
gi|3 : ACAGAA--CA----TCTTTT-------ATATCGT-----CATA-T-A------GTAAAT-TGCACAACATAA---TTTAAAA-------AA-GT----CATCATAACC---CGTG--AGCAAACATTTCAGAATATTA-------AAATATACAT-TTAGTGTTGGATA-TTACTACTGATTT-CAAACATAAAG----ATAA---------GGTTGTAAC--ATA-T-ACATGTAT--G----T-------------ATA-------T--T-GATA--GT------ATTTC----AAACACTGTACCACTTTGGTAT-ATGTGTTCTAACATGTTTATTTT--ACA--AAGGATTCAGTCATCAATTAATGT---TACACTG-AT----C--T-G-GAG-AGTA-TA------TATTGCATAT-AACAATGTATA--CATCAATACA------A--T-TTTAT-TTCATTTGATTGACAATTGATTTCTATCAATGCCCATTGACTCGGGGTTTTTTTCAATTTAAGCTCTTTAT--AT-ATGTGAACAGACATGTTTTGACAATAT-AT-AT-GTTTGCTGTCAATGTGTAACAATTCAATAA-TTTTAAACATACTTGGATTAATATGATGA-TAAC-TTTAAAATATGTATG-TCTTGA-GTG---CTTGTcatgtcgcaatgtgttgattttatactaaa
gi|30 : agt--TTC-------ATTTCA------AATA-C-A------GTTCAT-TGTA-----TCA---TTAGAAA------TAG-AT----CATTATGACC---CATG--ATCAAACATGTCAGTATAATGTTAACACAAAGTTACA
gi|32 : ttcCAGGA--CA----T--TTT-------ATTTTTTTTATCAATAAC-A------GTACAT-TGTACAGTATCA---TTTGAAA------TAA-AT----CATTATGACC---C-TGATATCAAAAATCCCAgtcgggaatgtgt
gi|33 : atatacatagagggATACGCGCTCTCTAGAACTCCGCATGTATTACATAATC------GTTCTTt
gi|34 : AACTAAA--CACTTTT--TTT-------ATTTCGT-----AATA-T-ACATGTAGTACAT-TGGACAATATAA---TTTGAAA------CAA-GT----CAagaaaggtgtcctccgttgcttccatttacccttttatacctcaagcacatg
gi|35 : aaGAACTAAA--CA----TCTTTT-------ATTTCGT-----AATA-A-A------GTACATCTG-ACAATACAA---TTTGAAA------CAA-GT----C
gi|36 : caGAACTGAA--CA----T--TTTTTCTTTTATTTCGT-----AATA-T-A------GTA
gi|4 : aacaACATAA---TTCGAAA------ATG-GT----TATTTTGACC---TGTG--ATCAAACATTTCCCAATATTGTTATTACAAATATACAT-TAAATGACGGATA-TAATTACTGATTCACAAACAAAAAG----ATTG---------GGTTGTAAT--TTA-T-A------T--G----TC-----ATATTA-ATA-------T--TTGATA--GT------ATTAC----AAACACT-CACCCCTTTGGTA-CCTGTGTGCTAACATATTTATTTT--TAA--AAGGATTAACTAATCAATT----------------------C--T-GTG-G-AGTA-TA------TATT-CGTTTTAATAGTGTAGA--C-TTAA-ACA------A--CGTT-AT-TTCATTTGATATACTTTTGATTTATATCGATGACCATAGATTCG-----TTTTTCAGTTTAAACGCTTTGT--AT-ATATAAACAGACAGGTTTCT----TAT-AATGT-GTTTACT-TCAGTGTGTATCAATTTTATCGTTTTTTAACATACTTGGGTTGATATAATAT-TAACTTTTAAA-------------TTA-GCC---CTTGTATAAACGACATTTAAATAAAA-AATGATACTCGTCCTCCAAAA
gi|5 : AAATATTGAC-TAAATGACGGATAATATTTACTGATT------------G----ATTG---------GATTGAAAT--ATA-T-A------T--G----TC-----A-------TA-------T--T-AATA--GC------AATAC----AAACAGTGCATCACTTTGGTATCTT-TATGTTAACATTTTTATTTA--AAATTAATATTTTACTCATCAATTGCTAT---TACAATG-AT----C--T-A-G-G-GATAATG------TATTCCATTTTAACAGTGTATG--C-TAAA-ACACACGTAAGTT-TT-AT-TTCGTTTGATTTACAATTTATTTATATCGATGACCATATACTAG-----TTTGTCAGTTTAAACGCTTTGT--ATAATG----CAAACATGCTTCT----AAT-AC-AC-AGTTGCTGTCAGTTTGTAGCGGTTCAATAG-TTTTAAACATACGTGGGCTGGTATTATA--------CTAAAATATATAGG-TA-TTACGTT---CTTGTACAAATAACATTCAAGTAAAATAATGATACTCTTCCTCTAGAACTCGGCACATATTACATA
gi|6 : tcattatagaaGAACAGAA--CA----T--TTTTT-----ATTTCGT-----AATA-TTAT-----ATACAT-AGTACAACTTAA---TTGGAAA------TCG-GT----CATTATGATCACACATT---TCATACATTTCA-AACATT---AATACAAATATACAT-TAAATGACGGATA-TAATTACTGATTT-CAAATTTAAAG----ATTG---------GGTTGTTAC--ATATT-A------T--C----TT------------ATA-------T--T-AATA--GT------ATTAT----TAACATTACATCACTTTGGTATC-TATGTTC-------TCTGTTCT--CAG--------TTAC--------TACTACATGTACAATG-AT----C--GAG-G-G-AATA-TA------TATTGCATTTTAA
gi|7 : gGAACAGAA--CA----TCTTTT-------ATTTTGT-----AATA-T-A------GTATGT-TGCACAACATTA---TTTGAAA------TAA-GT----CATTATGACC---CGTG--ATCAAACATTTCAGAAAATTGTTATTACAAATATACAT-TAAATGATGTGTA-AAATTACTGATTT-CAAACATAAAG----TTAG---------GGTTCTAAG--ATA-TAA------TAAG----TC-----A------A-A-------T--T-AACA--GT------ATTACAATTAAACACTGTACCACTTTAGTATC-TGTGTGCTAACATATTTATTAT---AA--AAGGATTTACGTGTCAATT--TAC---TACCATG-ATGCAAT--G-G-G-G-AGTA-TA------TATTGCAATTTGACAGTGTATC--C-TTAA-ACA------AT-T-TT-AT-TTCATTTGA-TTATATTTAATTTCTATCAATGAgaatacccctctatatttttgtagttgacttattgtgcaatatgtgtattttatagaattacaaccatgttgctttctgttggtttatattttaaatgattattttattaaataatttacacagccaagt
gi|8 : caGAACTGAAA-TA----T--GTT-------ATTTTGT-----AATA-C-T------GTAGAT-TGTACAACGTAA---CTTAAAA------TAA-TT----CATAATGACC---AGTG--ATCAAACATTTAAAAAAAGTGTTATTACAAATAAACAA-TAAATGACAAATA-TAATCACTGATTT-CAAACATAAAG----ATTG---------GGTTGTAGC--ATA-T-A------T--G----TCATGTAA------ATAT------T--T-AAAA--GT------ATTAC----AAACACTGCACCACTTTGGCA-CATGTGTGCTAAAAT-CTTA------AAA--AAAGATTTACTCATCGATTACTAC---AACAAAG-AT----C--T-G-G-GTAGTA-TA------TATTGCATTTTAACAGTGCTGA--T-TTAA-ACA------A--T-T---T-TTCATTTGGTTGACAATTAATTTCTCTCAATGACCt
gi|9 : aaaAACAGAA--CA----TATTTT-------ATTTCGT-----TATA-T-A------GTACAT-TGAACAACATAA---ATTGAAA------AAAAGT----CATTTTAACC---CGTG--ATTCAACATTTCACAATATTATTATAACAAATATACAT-CTATTGATTGATA-TAGTTATTGTTTA-TAAATATATAGATATATTG---------GGTTGTAAC--ATA-T-A------TACG----GC-----ATATATTATA-------T--T-AATAT-GTTATAGAATTAT----AAACACTGCACCACTTTGGTATC-TGAGTGCTAACATATTTATTTT--AAA--AAAA---TACTCCTCAGTTACTAC---TACAAAG-AT----A--TGG-G-G-AGTA-TA------TATTGCATTTTAACAGTGTATA--A-TTtat
blockSeqs : GG CTTTT TTCTTTT TTATC AC CATGTA C ACA TACTAGTAG ACAA ACA AT . A A ATAT CATGTTGCA A TT T A CATGTA GTCATATGCTATATTAATAT GA T CG TATAGA AATT TCG G AGA TT A ATG A GCAA TGT T A T A CATGTC TAATT T CACACGTAAGT A T A A GGGTT TT A G ACAATATATAT A T AAT T A T CCCCAAGTC T C .
blockSeqs : A TCT TT . TT T . . AAAA . . . . . . . . A TT . . . GTGTATCATGTTTATAT G T T A AA TCT G TAA . A . . . TGT T . . . . TACA . CAAT G . . G . . . T TTTAAATT G . AT T A T TCTTGAGTG . G
blockSeqs : . AGT TA . T . . . TAG . . . . . . . . A . . . . GTGTATCATGTTTATAT . . T . . CCT G A . A . . . TA . . . . . GAT . CAAC . . . T . . . T TATAATTT G . AT C T T TATTACGTT .
blockSeqs : . TAT TT . A . . . TAG . . . . . . . . G . . . . ACGGCATATATTATA . . . . . TCT G T . G . . . TA . . . . . GGC . CAAT . . . G . . . G TATAATGT T . TT T A T TTAGCC
blockSeqs : . TCT . . T . . . TAG . . . . . . . . A . . . . CCCATATATGATA . . . . . CA G T . A . . . TA . . . . . TAC . GAT . . . A . . . T AATACAC A . A . A T TCTG
blockSeqs : . TCT . . T . . . CAG . . . . . . . . A . . . . GTCATGTAAATAT . . . . . CA G A . A . . . TA . . . . . TTT . CAA . . . A . . . G TATA A . . . . .
blockSeqs : . TCT . . A . . . TAA . . . . . . . . A . . . . TTCATATTAATA . . . . . CA G G . A . . . GA . . . . . TAC . GAT . . . G . . . T TAT G .
blockSeqs : . TAT . . C . . . TAG . . . . . . . . T . . . . GTCATATTAATA . . . . . CC G A . G . . . TG . . . . . GAC . CAA . . . G . . . . .
blockSeqs : . T . . T . . . TAA . . . . . . . . T . . . . AAGTCAAA . . . . . CC A A . A . . . T . . . . . TGC . CAA . . . T .
blockSeqs : . G . . T . . . CAA . . . . . . . . A . . . . ATCAGTA . . . . . TA G T . A . . . G . . . . . TCC . CAA . . . . .
blockSeqs : . T . . A . . . CAA . . . . . . . . A . . . . GTAGATA . . . . . CC G A . A . . . T . . . . . GAT . GT . . .
blockSeqs : . T . . T . . . ATG . . . . . . . . A . . . . GTCGTA . . . . . TC G C . . . . . T . . . . . TAA . T . . .
blockSeqs : . T . . T . . . TCG . . . . . . . . T . . . . ATCATA . . . . . TC . A . . . . . T . . . . . G . . . . .
blockSeqs : . A . . T . . . TAA . . . . . . . . A . . . . GTCATA . . . . . CA . A . . . . . G . . . . . G
blockSeqs : . T . . C . . . TAA . . . . . . . . A . . . . GCCATA . . . . . TC . . . . . T . . . . .
blockSeqs : . T . . T . . . AA . . . . . . . . A . . . . GCCATG . . . . .
blockSeqs : . T . . A . . . AA . . . . . . . . . . . . . GTCATA . . . .
blockSeqs : T . . T . . . G . . . . . . . . . . . . . CTTATA . . . .
blockSeqs : T . . T . . . T . . . . . . . . . . . GATAT . . .
blockSeqs : . . C . . . . . . . . . . GTATA . .
blockSeqs : . . T .
blockSeqCons : GTCATATTATA******************** CC* TCTTAAGTN*****
originalCons : GAACAGAA--CA----T--TTT-------ATTTCGT-----AATA-T-A------GTACAT-TGTACAACATAA---TTTGAAA------TAG-GT----CATTATGACC---CGTG--ATCAAACATTTCAGAATATTGTTATTACAAATATACAT-TAAATGACGGATA-TAATTACTGATTT-CAAACATAAAG----ATTG---------GGTTGTAAC--ATA-T-A------T--G----TC-----A------ATA-------T--T-AATA--GT------ATTAC----AAACACTGCACCACTTTGGTATCNTGTGTGCTAACATATTTATTTT--AAA--AAGGATTTACTCATCAATTACTAC---TACAATG-AT----C--T-G-G-G-AGTA-TA------TATTGCATTTTAACAGTGTANA--C-TTAA-ACA------A--T-TT-AT-TTCATTTGATTTACAATTGATTTCTATCAATGACCATAGACTCG-----TTTTTCAGTTTAAACGCTTTGT--AT-ATGTAAACAGACANGTTTCT----TAT-AA-AT-GTTTGCTGTCAGTTTGTAACAGTTCAATAG-TTTTAAACATACTTGGGTTGATATAATAA-TAACTTTTAAAATATATAGG-TC-TNA-GTC---CTTGTATAAACGACATTCAAATAAAA-AATGATACTCGTCCTCTAGAACTCGGCACGTATTACATAATCACGCTAGTTCTT
finalCons : GAACAGAA--CA----T--TTT-------ATTTCGT-----AATA-T-A------GTACAT-TGTACAACATAA---TTTGAAA------TAG-GT----CATTATGACC---CGTG--ATCAAACATTTCAGAATATTGTTATTACAAATATACAT-TAAATGACGGATA-TAATTACTGATTT-CAAACATAAAG----ATTG---------GGTTGTAAC--ATA-T-A------TGTCATATTATA--------------------T--T-AATA--GT------ATTAC----AAACACTGCACCACTTTGGTACC-TGTGTGCTAACATATTTATTTT--AAA--AAGGATTTACTCATCAATTACTAC---TACAATG-AT----C--T-G-G-G-AGTA-TA------TATTGCATTTTAACAGTGTANA--C-TTAA-ACA------A--T-TT-AT-TTCATTTGATTTACAATTGATTTCTATCAATGACCATAGACTCG-----TTTTTCAGTTTAAACGCTTTGT--AT-ATGTAAACAGACANGTTTCT----TAT-AA-AT-GTTTGCTGTCAGTTTGTAACAGTTCAATAG-TTTTAAACATACTTGGGTTGATATAATAA-TAACTTTTAAAATATATAGGTCTTAAGTN-----CTTGTATAAACGACATTCAAATAAAA-AATGATACTCGTCCTCTAGAACTCGGCACGTATTACATAATCACGCTAGTTCTT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TTAAAACATATTGCAAGTTTTATAAATTCATTGCCCGTTACTATTTATATGTTTATTTATACTAACAATTGATAATTAATATTAACATTATTGCATAGATGTTTTCTTAAGCTATGTTTGTATGTACGTTTATAACATGTCGCAATTATGGTATGATGAAATAGAAATTTTGTATATTGATGCTTATGCTGTTCATTTGAACCAAAGTGTAAATAAAAGAA
Unaligned ( gi|25 ): TAAATTGAGAATCATTAAACAATAATTTATTACATAGCCATTTCCTTCAGCTATGATTGTATTTACGTTTGTTACATGTCGCCATTATGTCAGGATGATATAGAAATGTGTATATTGATACTTATGCTGTAAATATGAACCTAACATTAAAT
Unaligned ( gi|28 ): ATTTTTTTAGAAACATATATATAAACGTTTATTACATGTCGCCATTATGTTATGATAATATAGAAATTTGCATAGTTATGCTTTTGCTGTTCATATGAACCTAAGTGTAAATAAATAACTGAA
Unaligned ( gi|31 ): TTATGTATATGTATTACATGTCGCCATTACGTTATACTTAAATTGAAACTTGTACATTTGATGCTAATGTTGTTCATATGAAAATAAGTGTAAATAAAGAATT
Unaligned ( gi|37 ): AACAAAACACAACATTGCACAACACATGCAACGCAA
Unaligned ( gi|38 ): CATGTACCTTAAGTTTCCATAACATGCAATTTC
Alignments
lowQualScore : 1111111 1111111 22222222222222222222 1111 22222222222 222222222222222 111111 1 222222
lowQualScore : 55 5555555 3333333 44444 222 777777 1 333 8888888888 4444 333 22 0 0 2 2 2 1 4444 888888888 55 22 4444 6666 22 44 55555555555555555555 2 2 888888 8888 2 888 33 0 1 444 2 5555 7777 5 2 2 2 777777 999999 0 2 33333333333 5 2 0 0 3 99999 66 4 2 0 666666666666666 1 5 888 5 1 1 888888 55 0 3 0 999999
lowQualScore : .. ....... ....... ..... ... ...... . ... .......... .... ... .. . . . . . . .... ......... .. .. .... .... .. .. .................... . . ...... .... . ... .. . . ... . .... .... . . . . ...... ...... . . ........... . . . . . ..... .. . . . ............... . . ... . . . ...... .. . . . ......
lowQualScore : 33 5555555 4444444 55555 111 000000 9 333 9999999999 0000 555 66 4 4 1 1 0 5 2222 000000000 22 66 0000 0000 66 55 99999999999999999999 0 1 666666 2222 5 222 77 5 1 444 5 3333 4444 0 5 5 5 222222 555555 2 9 99999999999 7 9 7 3 5 11111 11 4 6 1 333333333333333 1 0 999 7 7 4 000000 00 0 7 7 000000
consensus : GAACAGAA--CA----T--TTT-------ATTTCGT-----AATA-T-A------GTACAT-TGTACAACATAA---TTTGAAA------TAG-GT----CATTATGACC---CGTG--ATCAAACATTTCAGAATATTGTTATTACAAATATACAT-TAAATGACGGATA-TAATTACTGATTT-CAAACATAAAG----ATTG---------GGTTGTAAC--ATATAT--G----T----C--ATA--T---T-A-TA-------T-T-AA-TA-GT------ATTAC----AAACACTGCACCACTTTGGTACCT-GTGTGCTAACATATTTATTTT--AAA--AAGGATTTACTCATCAATTACTAC---TACAATG-AT----C--T-G-G-G-AGTA-TA------TATTGCATTTTAACAGTGTANA--C-TTAA-ACA------A--T-TTAT-TTCATTTGATTTACAATTGATTTCTATCAATGACCATAGACTCG-----TTTTTCAGTTTAAACGCTTTGT--AT-ATGTAAACAGACANGTTTCT-----TAT-AA-AT-GTTTGCTGTCAGTTTGTAACAGTTCAATAG-TTTTAAACATACTTGGGTTGATATAATAA-TAACTTTTAAAATATATAGGTCTTAA---GTCCTTGTATAAACGACATTCAAATAAAA-AATGATACTCGTCCTCTAGAACTCGGCACGTATTACATAATCACGCTAGTTCTT
Reference ( family-4809 ) : GAACAGAA--CA----T--TTT-------ATTTCGT-----AATA-T-A------GTACAT-TGTACAACATAA---TTTGAAA------TAG-GT----CATTATGACC---CGTG--ATCAAACATTTCAGAATATTGTTATTACAAATATACAT-TAAATGACGGATA-TAATTACTGATTT-CAAACATAAAG----ATTG---------GGTTGTAAC--ATATAT--G----T----C--ATA--T---T-A-TA-------T-T-AA-TA-GT------ATTAC----AAACACTGCACCACTTTGGTACCT-GTGTGCTAACATATTTATTTT--AAA--AAGGATTTACTCATCAATTACTAC---TACAATG-AT----C--T-G-G-G-AGTA-TA------TATTGCATTTTAACAGTGTANA--C-TTAA-ACA------A--T-TTAT-TTCATTTGATTTACAATTGATTTCTATCAATGACCATAGACTCG-----TTTTTCAGTTTAAACGCTTTGT--AT-ATGTAAACAGACANGTTTCT-----TAT-AA-AT-GTTTGCTGTCAGTTTGTAACAGTTCAATAG-TTTTAAACATACTTGGGTTGATATAATAA-TAACTTTTAAAATATATAGGTCTTAA---GTNCTTGTATAAACGACATTCAAATAAAA-AATGATACTCGTCCTCTAGAACTCGGCACGTATTACATAATCACGCTAGTTCTT
gi|1 : GAACAGAA--CA----T--TTT-------GTTTCGT-----AATA-T-A------GCACAT-TGTATAACATAA---TTTGAAA------TAG-GT----CATACTGACC---CGTA--ATCAAATGTTTCATAATATTGATATAACAATTATACTTATAAGTGAGTGATA-TAACTACTGCTGT-CAAACATCAAG----ATTT---------GGTTGTAAC--ATATAT--G----T----C--A-A--T-----A-CG-------T-T-A--TA-GT------ATTAC----ACTAACTGCAGCACCTTGGTTTCA-TTGTGCTAACATATTTATTTT--AAA--ACTGGTTTACTCATCAATAACTAC---TACACTG-AT----C--T-G-G-G-AGTA-TA------TATCGCATTTTGACAGTGAAGA--C-TTAG-ATT------A--T-TTAT-TTCTTTTAATTTACAATTATTTTCTGTCTATAACCATAGACTCG-----CTTTTCAGTTTAAACGCTTTGT--AT-ATGTAAAGTGACAGGTTTCT-----TATAAA-AT-GTCTGCTGTCAGTTTATAAAAATTCATTAG-TTTTAAACATACTTGGGTTGATATAGTCA-TAACCTTTACTATACA-AGGTCGTAAGTCGTTTTTGTATAGACGGCATTAAACTAAAA-TATGATACCCGTCCTCTAGAACTCAGCATGTATTACATAATCACGCTAGTTCTT
gi|10 : GAACAGAAGGTA----T--TCT-------ATTTCGT-----AATA-T-A------GTACAT-TGTACA---TAA---ATCTAAA------TAG-GT----CATTCTGACC---CGTG--AT-AAACATTTCAGAATA---------------------------ACGGATA-AAATTACTGATTT-TCAATATAAAG----ATAG---------GGCTGT------TACAT--G----T----C--GTA--T---C-A---------------A-TA-GT------AT-----------ACTG--------TGGTACAT-GTGTGCTAAAATATTTATTCT--AAA--AAGGATTTACT-----------GC---TATAAGG-AT----C--T-ATG-G-TGCA-TA------TACTGCAGTTAAACAGTGTATAATT-TTAA-A-G------T--T-TTGTATTCATCATATTTACAATTTATTTCTTTCCATGACTATAAACTCG-----TTTTTTAATTT
gi|11 : caTGACA---CGTG--ATCAAACATTTCAGAATATAGCTATTACAAATATACAT-ACTATTACGGATA-TAATTACTGATTT-CAAACATAAAG----ATCG---------AGTTGTAACTTATACAT--GTGTAT----C--ATGT-T---T-A-TAT------T-T-AA-TT-GT------ATTAT----AAACACTGCACCACTTTGGTACAT-GTGTGCTAAAGTATTTATGTT--TGA--AAGGATTTACTTATCATTTACTAC---TACAATG-AT----CTGT-G-G-G-AGTA-TA------TATTGCATTTTTACAGTGTAG--------A-AGA------T--T-TTAT-TCTTTTTGATTTGCAATTGATTTCCACCACTGACTAT
gi|12 : GAACAGAA--CA----TCTTTT-------ATTACGT-----AATA-A-A------GTACAT-TGTACAATATTA---TTTGAAA------TAG-GT----TATTATAATT---CATG--ATCAAACATTTCAGAATA---TTATTACAAAAACCCAT-TAAATAAC--ATA-GTATTAC---TTT-CAAACATA----------C---------GGTT---AC--AT-TAT--A----T----C--A----------G-TA-------TGT-AA-TA-GT------ATTAC----AAATACTACATC------GT--------TGCCAACATATTAATCTTAGAAA--AAGGATTTAGTCATCAATAACTAC---TATAATG-AT----C--TAG-G-G-AGTA-CA------TATGACATTTTAACAGTGTAGA--T-GTAA-ACA------A--TATTAT-CTCATTTGgtcatcc
gi|13 : ataGTG--ATCAAACATTTCAGAATATAGCTATTACAAATATACAT-AATATTACGGTTA-TAATTACTGATTT-CAAACATAAAG----ATCG---------AGTTGTAACTTATACAT--G----TGTATC--ATG--T---TTA-TA-------T-TTAA-TT-GT------ATTAT----AAACACTGCACCACTTTGGTACAT-GTGTGCTAAAATATTTATGTT--TGA--AAGGATTTACTGATCAATTACTAC---TACAATG-AT----CTGT-G-G-G-AGTA-TA------TATTGAATTTTTACAGTGTAG--------A-AGA------T--T-TTAT-TCTTTTTGATTTGCAATTGATTTCTATCAATGACTAT
gi|14 : T-TAGACTTAAAT----ATTC---------AGTGATAAC--ATATAT--T----T----C--ATA--T---T-AATA-------T-TTAA-TA-TT------ATTAC----AAACACTGCACCACTTTG-TACCT-GTGTGCTAACATATTTATTTT--AAA--AATGATTTGCTCATCAATTGCTAC---TACAATG-AC----C--TAG-G-G-AGAA-TA------TATTGCATTTGAACAGTGTAGG--C-TTAA-ACA------AT-T-TTAT-TTCATTTAATTTATAATTGATTTCTATCAATAACCATGGACTCG-----TTTTTCAG-TTAAACGCg
gi|15 : aacACTTTTA-CAATGGTCATATACTCG-----TTATTGAGTTTAAATGCTTTGT--AC-ATATGAACAGACAGGTTTCT-----TTT-AA-ATTGTTTGCTGTCAGTTTGTAACAATTCAATAG-TTTTAAACAT--TTCGGTTTATATAAAAAATAACTTTTAAAATATATAG
gi|16 : ttttaagtttaaaaaaatagaagtctaattagttttgtttttaacaataattaatgtgaaatccgatcactgtataatgtggtgctaattcaaC--ATATAT--A----T----C--ATA--T--------------------AACTA-GT-------TTA---------ACTGCACCACTTGGGTTTCT--T---------TATTTATTTT--GAA--AAGGATTTGCTCATCATTTACTAC---GATACTG-TT----C--TAG-G-G-TCTA-TACATGTCTATTGCATTTTAACAGTGTATA--C-T----------------T-TTAT-ACAATTTTATTTACATTTGATTTCTATTCATAACCATAGACTCG-----TTTCTCAGTTTAAACGCTTTGT--AT-ATGTAAACAGACATGTTTTT-----T------AT-GTTTGCTGTCA
gi|17 : TAT---TATAATG-AA----C--TAG-G-G-AGTA-TA------TATTACTTTTCAACAGTGTATT--T-TTAT-ACA------AC-T-TTAT-T-CATTTTATTATCAATGAAGTCCTATCTATGACCATAAACTTG-----TTTTTCAGCTGAAACGCTTTGT--AC-TTGTAAACA---------------------------TTTGCTGTCTGTTTGTAATAGTTCAATAG-AGTTAAACATACTTGGGTTGATATAATAA-TAACTTTTAGAATATATAGGTCT------G----TGTTTAAACGACAAACAAATAaa
gi|18 : GAACTGAA--CA----G--TTT-------------T-----AAT--T-G------GTACAT-TATACAACATAA---ACTGAAA--------G-GT----CATTATGGCG---CGTG--ATCAAACATTTCACAATATTGTTACTACAAATATACAT-TAAATGACAGATA-TAATTACCGATTT-ATAACATAAAT-----TTT---------GATTGTGAA--AGATCT--G----T----C--ATA--T---T-A--A-------T----A-CG-GT------ATT
gi|19 : aataca----T--TTT-------ATTTCGT-----AATA-T-A------GAACAG-TGTACAACAT-------------------------------TATTACC---TCTG--ATCAAACATTTCAGAATATTATTATTACAAACATACAT-TAAATGACGGATA-TAATTATTAATTT-CAAACATGCAG----ATTG---------GGTTGTAAT--ATATAT--G----T----C--ATA--TGC-T-A-TATTAATATT-T-AA-TA-GTA-----ATCAT----AAACACTGCACCACTGCGGTACCT-GTGTGCTAACATATTTATTTT--AAtgccattggtaatgatacgttctctattcattatatcctagatccacatatggctgaga
gi|2 : attGAACAGAA--CG----T--TTTTT-----ATTTCGT-----AATA-A-A------GTACAC-CTTACCATATAA---TT--AAA------T---GTACAACATTATGACT---CGTG--ATTAATCAGTTCAGAATATTGTTATTACGCATATATAA-TAAATGGCGGATA-TAATTACTGATTT-C-AACATA-----------------------TATACC--A-GTAT--G----T----C--ATA--T---TGA-TAT------T-T-AA-TA-CC------ATAACAA--AAACACTGCACCACTTCAGTGCCTGGGGTTCTAACATATTTTTTTTTAAAA--AAAGATTTACTCATTAATTATT-T---TACAATGAAT----T--G-G-G-G-AGTG-TA------CATTGCATTTCAACAGTGTATA--C-TTTA-AT----------T-TTAT-TTCCCT--------------TTTCTATCAATGACCATA------------TTTTAAGTTTAAACGCTTTGC--AT-ATATAAACAGACATGTTTCT-----TAT-A-------------TCAGTTTGTAACAGTTATACAC-TTTTAAACAAACATAGGTTGATATAATAA--GACCTCTAATTTATATAGGCCCCAA---GTCCTTATGTAAACGACATTCAAATAAAA-AATGATACTCGTCCTCT
gi|21 : AACAAAA--CA----T--CTTTA-----ATTTCGT-----AATA-C-A------GTACAT-TGTACAACATAA---TTTAAAATACTAGTAG-GT----CATTATGACC---CGTA--ATCAAACATTTCAGAATATgatgaaacagcatgagacata
gi|22 : aaaaa--TTT-------ATTTTGT-----A-TA-T-A------GTATAT-TGTACAACATCA---TTTGAAA------TAG-GT----CATTAAGACA---TATA--ATCAAACATTTCAGAATATTGTTGTTACAAATATACAT-TAAATGACCAATA-TAATTACTGATTT-CAAAGGTAATG----ATTGCATGTTGCAGGATGTACC--A-GTAT--G----TA---G--ATA--T---T-T-TG-------C-T-AA-aacatatatctgcttgattaagagtttagtttaaaataaatcatagttgcatgtacccttttggaggaataatatactttgtgctatacacattttctatatacgat
gi|23 : cACAGAA--CA----A--ATT--------TTTCGA-----AATA-T-A------GTACAT-TGTACAAGATAAACATATGAAA------CAG-GT----CATAATGACC---CATG--ATCAAATATTTCAGAATATTGATATTACAAATATAAAC-TAAATGACGGATA-TGATTAGTAGTTT-AACACATACAT----ATTG---------GGTTGTAAC--ATATGT--C----C----C--ATA--TA--TGA-TA-------T-T-AA-TA-aaattaaatcttaaaaac
gi|24 : ctGAA--CAAG--T--ATT-------ATTTCGT-----AATA-A-A------GAACAT-TGTACAACATAA---ATTGAAA------AA------------------------------AAATATTTCAGAGTACTGTTATTACAA-TAAACAT-TAAATGACGGATA-TAATTACTGATTT-CAAATACAGAG----ATTG---------GGTCGTTTC--AGATAT--G----C----C--ATA--T---G-A-TA-------A-T--A-TA--T------ATTAC----Atttaa
gi|26 : ATAAACATG-----TTTTCCAGTTTAAATGTTTTGTTTAT-ATATAAACAAACAGGTTTCT-----TAT-AA-TTTGTTTGCTGTCAGTTTGTAACATTTCAATAG-TTATAAACAAACTTGGGTTGATATAATctgt
gi|27 : gatgtctatatttaaaaagGAACAGAA--CA----TATTTC-------ATTTCGT-----AATG-T-A------GTAAAT-T
gi|27 : ca----T--TTT-------ATTTCGT-----AATA-T-A------GTACAC-TGTAAAACATAA---TTTGAAA------TAA-GT----CATTATGACC---CGTG--AT-AAACATTTCAGAATAATATTATTACAAATATACcttttatttcgtaatatagtacactgtaaaacataatttgaaataagtcattatgacccgtgataaacatttcagaataatattattacaaatatact
gi|29 : cagaacagaacatatttcatttcgtaatgtagtaaattcATATACAT-AAAATAGCGGATA-GGATTACTGGTTT-CAAATATAAAG----A-TG---------GATTGTTAC--ATATAT--G----C----C--ATG--T---TCA-TA-------G-T-At
gi|3 : ACAGAA--CA----TCTTTT-------ATATCGT-----CATA-T-A------GTAAAT-TGCACAACATAA---TTTAAAA-------AA-GT----CATCATAACC---CGTG--AGCAAACATTTCAGAATATTA-------AAATATACAT-TTAGTGTTGGATA-TTACTACTGATTT-CAAACATAAAG----ATAA---------GGTTGTAAC--ATATAC--A----T-------GTA--TG--T-A-TA-------T-T-GA-TA-GT------ATTTC----AAACACTGTACCACTTTGGTATAT-GTGTTCTAACATGTTTATTTT--ACA--AAGGATTCAGTCATCAATTAATGT---TACACTG-AT----C--T-G-GAG-AGTA-TA------TATTGCA-TATAACAATGTATA--CATCAATACA------AT-T-TTAT-TTCATTTGATTGACAATTGATTTCTATCAATGCCCATTGACTCGGGGTTTTTTTCAATTTAAGCTCTTTAT--AT-ATGTGAACAGACATGTTT-TGACAATAT-AT-AT-GTTTGCTGTCAATGTGTAACAATTCAATAA-TTTTAAACATACTTGGATTAATATGATGA-TAAC-TTTAAAATATGTATGTCTTGA---GTGCTTGTcatgtcgcaatgtgttgattttatactaaa
gi|30 : agt--TTC-------ATTTCA------AATA-C-A------GTTCAT-TGTA-----TCA---TTAGAAA------TAG-AT----CATTATGACC---CATG--ATCAAACATGTCAGTATAATGTTAACACAAAGTTACA
gi|32 : ttcCAGGA--CA----T--TTT-------ATTTTTTTTATCAATAAC-A------GTACAT-TGTACAGTATCA---TTTGAAA------TAA-AT----CATTATGACC---C-TGATATCAAAAATCCCAgtcgggaatgtgt
gi|33 : atatacatagagggATACGCGCTCTCTAGAACTCCGCATGTATTACATAATC------GTTCTTt
gi|34 : AACTAAA--CACTTTT--TTT-------ATTTCGT-----AATA-T-ACATGTAGTACAT-TGGACAATATAA---TTTGAAA------CAA-GT----CAagaaaggtgtcctccgttgcttccatttacccttttatacctcaagcacatg
gi|35 : aaGAACTAAA--CA----TCTTTT-------ATTTCGT-----AATA-A-A------GTACATCTG-ACAATACAA---TTTGAAA------CAA-GT----C
gi|36 : caGAACTGAA--CA----T--TTTTTCTTTTATTTCGT-----AATA-T-A------GTA
gi|4 : aacaACATAA---TTCGAAA------ATG-GT----TATTTTGACC---TGTG--ATCAAACATTTCCCAATATTGTTATTACAAATATACAT-TAAATGACGGATA-TAATTACTGATTCACAAACAAAAAG----ATTG---------GGTTGTAAT--TTATAT--G----T----C--ATA--T---T-AATA-------T-TTGA-TA-GT------ATTAC----AAACACT-CACCCCTTTGGTACCT-GTGTGCTAACATATTTATTTT--TAA--AAGGATTAACTAATCAATT----------------------C--T-GTG-G-AGTA-TA------TATT-CGTTTTAATAGTGTAGA--C-TTAA-ACA------A--CGTTAT-TTCATTTGATATACTTTTGATTTATATCGATGACCATAGATTCG-----TTTTTCAGTTTAAACGCTTTGT--AT-ATATAAACAGACAGGTTTCT-----TAT-AATGT-GTTTACT-TCAGTGTGTATCAATTTTATCGTTTTTTAACATACTTGGGTTGATATAATAT-TAACTTTTAAA-----------TT-A---GCCCTTGTATAAACGACATTTAAATAAAA-AATGATACTCGTCCTCCAAAA
gi|5 : AAATATTGAC-TAAATGACGGATAATATTTACTGATT------------G----ATTG---------GATTGAAAT--ATATAT--G----T----C--ATA--T---T-A---------------A-TA-GC------AATAC----AAACAGTGCATCACTTTGGTATCT-TTATGTTAACATTTTTATTTA--AAATTAATATTTTACTCATCAATTGCTAT---TACAATG-AT----C--T-A-G-G-GATAATG------TATTCCATTTTAACAGTGTATG--C-TAAA-ACACACGTAAGTT-TTAT-TTCGTTTGATTTACAATTTATTTATATCGATGACCATATACTAG-----TTTGTCAGTTTAAACGCTTTGT--ATAATG----CAAACATGCTTCT-----AAT-AC-AC-AGTTGCTGTCAGTTTGTAGCGGTTCAATAG-TTTTAAACATACGTGGGCTGGTATTATA--------CTAAAATATATAGGTATTAC---GTTCTTGTACAAATAACATTCAAGTAAAATAATGATACTCTTCCTCTAGAACTCGGCACATATTACATA
gi|6 : tcattatagaaGAACAGAA--CA----T--TTTTT-----ATTTCGT-----AATA-TTAT-----ATACAT-AGTACAACTTAA---TTGGAAA------TCG-GT----CATTATGATCACACATT---TCATACATTTCA-AACATT---AATACAAATATACAT-TAAATGACGGATA-TAATTACTGATTT-CAAATTTAAAG----ATTG---------GGTTGTTAC--ATAT-T--A----T----C-------T---T-A-TA-------T-T-AA-TA-GT------ATTAT----TAACATTACATCACTTTGGTATCT-ATGTTC-------TCTGTTCT--CAG--------TTAC--------TACTACATGTACAATG-AT----C--GAG-G-G-AATA-TA------TATTGCATTTTAA
gi|7 : gGAACAGAA--CA----TCTTTT-------ATTTTGT-----AATA-T-A------GTATGT-TGCACAACATTA---TTTGAAA------TAA-GT----CATTATGACC---CGTG--ATCAAACATTTCAGAAAATTGTTATTACAAATATACAT-TAAATGATGTGTA-AAATTACTGATTT-CAAACATAAAG----TTAG---------GGTTCTAAG--ATATA----------------ATAAGT---C-A-AA-------T-T-AA-CA-GT------ATTACAATTAAACACTGTACCACTTTAGTATCT-GTGTGCTAACATATTTATTAT---AA--AAGGATTTACGTGTCAATT--TAC---TACCATG-ATGCAAT--G-G-G-G-AGTA-TA------TATTGCAATTTGACAGTGTATC--C-TTAA-ACA------AT-T-TTAT-TTCATTTGA-TTATATTTAATTTCTATCAATGAgaatacccctctatatttttgtagttgacttattgtgcaatatgtgtattttatagaattacaaccatgttgctttctgttggtttatattttaaatgattattttattaaataatttacacagccaagt
gi|8 : caGAACTGAAA-TA----T--GTT-------ATTTTGT-----AATA-C-T------GTAGAT-TGTACAACGTAA---CTTAAAA------TAA-TT----CATAATGACC---AGTG--ATCAAACATTTAAAAAAAGTGTTATTACAAATAAACAA-TAAATGACAAATA-TAATCACTGATTT-CAAACATAAAG----ATTG---------GGTTGTAGC--ATATAT--G----T----C--ATG--TAAAT-A-T--------T-T-AA-AA-GT------ATTAC----AAACACTGCACCACTTTGGCACAT-GTGTGCTAAAAT-CTTA------AAA--AAAGATTTACTCATCGATTACTAC---AACAAAG-AT----C--T-G-G-GTAGTA-TA------TATTGCATTTTAACAGTGCTGA--T-TTAA-ACA------A--T-T--T-TTCATTTGGTTGACAATTAATTTCTCTCAATGACCt
gi|9 : aaaAACAGAA--CA----TATTTT-------ATTTCGT-----TATA-T-A------GTACAT-TGAACAACATAA---ATTGAAA------AAAAGT----CATTTTAACC---CGTG--ATTCAACATTTCACAATATTATTATAACAAATATACAT-CTATTGATTGATA-TAGTTATTGTTTA-TAAATATATAGATATATTG---------GGTTGTAAC--ATATATACG----G----CATATA--T---T-A-TA-------T-T-AA-TATGTTATAGAATTAT----AAACACTGCACCACTTTGGTATCT-GAGTGCTAACATATTTATTTT--AAA--AAAA---TACTCCTCAGTTACTAC---TACAAAG-AT----A--TGG-G-G-AGTA-TA------TATTGCATTTTAACAGTGTATA--A-TTtat
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TTAAAACATATTGCAAGTTTTATAAATTCATTGCCCGTTACTATTTATATGTTTATTTATACTAACAATTGATAATTAATATTAACATTATTGCATAGATGTTTTCTTAAGCTATGTTTGTATGTACGTTTATAACATGTCGCAATTATGGTATGATGAAATAGAAATTTTGTATATTGATGCTTATGCTGTTCATTTGAACCAAAGTGTAAATAAAAGAA
Unaligned ( gi|25 ): TAAATTGAGAATCATTAAACAATAATTTATTACATAGCCATTTCCTTCAGCTATGATTGTATTTACGTTTGTTACATGTCGCCATTATGTCAGGATGATATAGAAATGTGTATATTGATACTTATGCTGTAAATATGAACCTAACATTAAAT
Unaligned ( gi|28 ): ATTTTTTTAGAAACATATATATAAACGTTTATTACATGTCGCCATTATGTTATGATAATATAGAAATTTGCATAGTTATGCTTTTGCTGTTCATATGAACCTAAGTGTAAATAAATAACTGAA
Unaligned ( gi|31 ): TTATGTATATGTATTACATGTCGCCATTACGTTATACTTAAATTGAAACTTGTACATTTGATGCTAATGTTGTTCATATGAAAATAAGTGTAAATAAAGAATT
Unaligned ( gi|37 ): AACAAAACACAACATTGCACAACACATGCAACGCAA
Unaligned ( gi|38 ): CATGTACCTTAAGTTTCCATAACATGCAATTTC