lowQualScore : 1 222 11111 33 1 1 1 1 55555555555 11 11 333333 11 11 1111 1 111
lowQualScore : 2 1 2 3 5 2 33 333 22222 55 11 66 1 1 2 2 9 0 3 1 4 55 5 6 88888888888 44 6 4 88 00 5 666 33 3 555555 3 3 6 1 7 2 2 6 33 3 11 8888 2 1 0 3 8 888 1
lowQualScore : . . . . . . .. ... ..... .. .. .. . . . . . . . . . .. . . ........... .. . . .. .. . ... .. . ...... . . . . . . . . .. . .. .... . . . . . ... .
lowQualScore : 2 2 8 9 4 3 99 000 77777 00 66 88 1 9 5 5 2 0 3 4 7 00 0 0 44444444444 66 2 8 55 99 9 444 88 3 555555 6 3 8 9 0 2 2 7 00 2 55 8888 0 0 7 7 3 000 0
consensus : TTTCCGGCACGTGCTACAACATGACCTAAGTTCGAGGCCCGCTGGCGACCCCTGGCGGCC--A-T-TTTTT-----T--AAAAA-TAATTGTACCAACCTCAAGAGCTACTCANTACCTGTCGAACCCTTTGTTTTTGTTAAAAACGTCACANGAGTGAGCTCAGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCTGGCACGGGTTACCAA-TTTT-GACCCGAGCTATACGAAAAAGTATAAGTTATTTTTCGAAACGGT--AAAAATAAACTAGCCTTTATTTGACGAGATTGAGCTAATAAAA--A-ATTT--TTTTTCTCTAGGTCCCTTATTTCTATTTTTGCACGTGCACGTGCACGGGTTTGA---G-ATTTTTTAAC---AAAA-CTCGACGCCACTTTGTCAGGCTCGCGGAGACCTTTCNAACGATACCCAACT---TGAAAAAATCGGACCGAAAATGGCCTCTCGGCTCGGGTTCGAGCCCT
Reference ( gi|1 ) : TTTCCGACACGTGCTACAACATGACCTAAGTTTGAGGCCCGCTGGCGACTCTTTGCGGCC--A-C-TTTTT-----T--AAAAATTAATTGTACCAACCTCAACAGCTACTCACTACCTGTCAAACCCTTTGTTTTTGTTAAAAACGTCACACGAGTGAGCTCAGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCTAGCACGTGTTACCAA-TTTT-GACCCGAGCTATACAAAAAAGCATAAGTTATTTTTCGAAACGGT--AAAAATAAACTAGCATTTATTTAACGAGATTGAGCTAATAAAA--ACATAT--TTTTACCCTAGGTCTATTATTTCTATTTTTGCACGTGCACAGGCACGGGTTTCA---G-TTTTCTT--T---AAAA-CTTGACACCACTTTATAAAGTTCGCCGAGACCTTTAAAATGATACCAAACT---TGAAAAAATCGAACCGAAAATGGCCTCTCGGCACAGTTTCAAGCCCT
gi|3 : TTTCCGACACGTGCTACAACATGACGTAAGTTTGAGGCCCGCTGGCGACTCTTTGCGGCC--A-T-TTTTT-----TTTAAAAAT-AATTGTACCAACCTCAAGAGCTACTCACTATCTGTCAAACCCTTTGTTTTTGTTAAAAACGTCAC
gi|6 : TTTCCGGCACGTGCTACAACATAACCTAAGTTCGAGGCCCGCTGGCGACCCCTGGTTGTC--AGA-TTTTC-----T--AACAAATA----TACCAACTTCAAGAGCTACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttctagcacgtgttaccaattttgacccgagctatacaaaaaagcataagttatttttcgaaacggtaaaaataaactagcctttatttgacgagactgagctaataaaaatacatatttttaccctaggtctattatttctatctttgaacgtgcacagacacgggtttcagatttttttaaaacttgacgccactttataaagttc
gi|5 : TTACCGGCACGTGCTACAACATAACCTAAGTTCGAGGCCCGCTGGCGACCCCTGGTGGTC--A-TATTTTC-----T--AAAAA-AAAATATACCAATCTCAAGAACTACgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttctgtcacgggttaccaatttttgaaccgtgctatacgaaaaagtataagttatttttcgaaacggtaaaaataaactagcctttatttgacgagattgagctaattttttttctctaggtcccttatttctatttttgcacatgcacgtgcacgggtttgagattttttaacaaaactcgacgccactttgtcaggct
gi|4 : TTTCCGGCATGTGCTACAACATAACTTAAGTTCGAGGCCCGCTGGCGACCACTGGTGGTC--A-TATTTTC-----T--AAAAA-TA--TATATCAACCTCAAGAGCTGCaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttctagcacggttatcaatttttgatccgagctatacgaaaaagtataagttatttttcgatacggtaaaaataaactagccttcatttgacgagattgagctaatatttttttttttactctatgtcccttatttctatttttgcacatgcacgtgcacgggtatgagattttttaacaaaactcgacgccactttgtc
gi|20 : TTTCTGGCACGTGCTACCATTTGACCTAAGTTCGAGGACCGCTGGCGACCCATGGCGGCC--A-T-TTTTT-----T--AAAAAgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttctggcacgggttaccaatttttgattattttcgaaacggtaaaaataaactcgcctttatttgacgagattgagctatttttttttctctaggtcccttatttctatttttgcacatgcacgttcacgggtttgagattgtttaacaaaactcgaccccactttgtcaggctcgcgaagacctttccaacaatacccaacct
gi|19 : TTTCCGGCAGATGCTACAACATGACCTAAGTTCGAGGCCCACTGGCGACCCATAGCGGCC--A----TCTT-----T--AGAAA
gi|18 : TTTCCGGCACGTGCTACAACATAACCTAAGTTCGAGGCCTGCTTGCGACCCCTGGTAGTCATA-T-TTTCT-----T--AAAAAcaaaa
gi|2 : CGACACGTGCTACAAGATGACCTAAGTGTGAGGCCCGCTGGTGACTGTTTGCGGCC--A-C-TTTTT-----A--AAAAAATAATTGTATCAACCTCAAGAGCTACTCACTACCTGTCAAACCCTTTGTTTTTGTTAAAAACGTCACACGAGTGAGCTCAGTACaaat
gi|13 : CACATACCAGAACATGACCCAGGTTTGAGGCCCGCTGGAGACCCCTAGCGGCC--A-G-ATATTAGGAAT--AAAAA--AATCGCTTTAG---CACCAACTAATCAATACCTGCCGAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttctagcacgtgttaccaattttgacccgagttatacaaaaaaagttatttttcgaaacggtaaaaataaactagcctttatttgacgagattgagctgttaaaaaaatatttttaccctaggtctattatttctatttttgcacgtgcacaggcacgggtttcatattttttttttaaaacttgacgcaactttatatagttcgcagagacctttaaaatgataccaaacttgaaaaaattgaaccagaaatggcctctcggcacgggttcaagccct
gi|7 : ACAACATAAC------TCGAGGCCCGCTGGCGACCCCTGGTGGTC--A-TATTTTC-----T--AAAGA--AAATATACTAACCTCAAGAGCTACtggtacttaaattattaaaa
gi|21 : CAACTTGACAAAGGTTCGAGGCCTGCTGGCGACCCCTAGCGGCC--A-gnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttatggcacgggtaaccaatttttgatccgagcaatacgaaaaagtaaaagttatttttcgaaacggtaaaaataaactcgcctttatttgaccagattgagctaatcaatttttttctctaggtcccttatttctagttttgcacatgcacgtgcacgggtttgagattattttaacaaaactcgacgccactttgtcaggctc
gi|23 : gACATGATTAAGGTTCAAGGCCCGCTGGCGACCACTAGCGGCC--A-gatatcgaaaataaattagtc
gi|22 : TGACCAAGGTTCGAGGCCTGCTGGCAATCCCTAGCGGCC--A-gatattggaaataaaaatcgc
gi|14 : cccaaatACCAAAGTTCGAGGCCCGCTGGCGAACCCTGGCGGCC--A-T-TTTTTC----T--AAAAAATAATTATACCAACCTCAAGAGCTACTCAATACCTGTCGACTTCTGTGTCCGGGTTAAAAATGTCATAAGAggtatcgggaataaataaag
gi|2 : aTTTTCTAGCACGTGTTACCAA-TTTT-GACCCGAGTTATACAAAAAA-----AGTTATTTTTCGAAACGGT--AAAAATAAACTAGCCTTTATTTGACGAGATTGAGCTGTTAAAA--AAATAT--TTTTACCCTAGGTCTATTATTTCTATTTTTGCACGTGCACAGGCACGGGTTTCATATT-TTTTTTT--T---AAAA-CTTGACGCAACTTTATATAGTTCGCAGAGACCTTTAAAATGATACCAAACT---TGAAAAAATTGAACCAGAAATGGCCTCTCGGCACGGGTTCAAGCCCTa
gi|3 : cgacacgtgctacaagatgacctaagtgtgaggcccgctggtgactgtttgcggccactttttaaaaaaataattgtatcaacctcaagagctactcactacctgtcaaaccctttgtttttgttaaaaacgtcacacgagtgagctcagtacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTTCTAGCACGTGTTACCAA-TTTT-GACCCGAGCTATACAAAAAAGCATAAGTTATTTTTCGAAACGGT--AAAAATAAACTAGCCTTTATTTGACGAGACTGAGCTAATAAAAATACATAT--TTTTACCCTAGGTCTATTATTTCTATCTTTGAACGTGCACAGACACGGGTTTCA---G-ATTTTTT--T---AAAA-CTTGACGCCACTTTATAAAGTTC
gi|6 : tttccgacacgtgctacaacatgacgtaagtttgaggcccgctggcgactctttgcggccatttttttttaaaaataattgtaccaacctcaagagctactcactatctgtcaaaccctttgtttttgttaaaaacgtcacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTTCTGTCACGGGTTACCAA-TTTTTGAACCGTGCTATACGAAAAAGTATAAGTTATTTTTCGAAACGGT--AAAAATAAACTAGCCTTTATTTGACGAGATTGAGCTAAT---------T-T--TTTTTCTCTAGGTCCCTTATTTCTATTTTTGCACATGCACGTGCACGGGTTTGA---G-ATTTTTTAAC---AAAA-CTCGACGCCACTTTGTCAGGCT
gi|5 : tttccggcacgtgctacaacataacctaagttcgaggcccgctggcgacccctggttgtcagattttctaacaaatataccaacttcaagagctacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTTCTAGCACG-GTTATCAATTTTT-GATCCGAGCTATACGAAAAAGTATAAGTTATTTTTCGATACGGT--AAAAATAAACTAGCCTTCATTTGACGAGATTGAGCTAAT--AT--TTTTTT--TTTTACTCTATGTCCCTTATTTCTATTTTTGCACATGCACGTGCACGGGTATGA---G-ATTTTTTAAC---AAAA-CTCGACGCCACTTTGT
gi|7 : ttaccggcacgtgctacaacataacctaagttcgaggcccgctggcgacccctggtggtcatattttctaaaaaaaaatataccaatctcaagaactacaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTTATGGCACGGGTAACCAA-TTTTTGATCCGAGCAATACGAAAAAGTAAAAGTTATTTTTCGAAACGGT--AAAAATAAACTCGCCTTTATTTGACCAGATTGAGCTAATCA------AT-T--TTTTTCTCTAGGTCCCTTATTTCTAGTTTTGCACATGCACGTGCACGGGTTTGA---G-ATTATTT--TAACAAAA-CTCGACGCCACTTTGTCAGGCTCc
gi|4 : acaacataactcgaggcccgctggcgacccctggtggtcatattttctaaagaaaatatactaacctcaagagctacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTTCTGGCACGGGTTACCAA-TTTT-----TGA--------------------TTATTTT-CGAAACGGT--AAAAATAAACTCGCCTTTATTTGACGAGATTGAGCT-AT---------TTT--TTTTTCTCTAGGTCCCTTATTTCTATTTTTGCACATGCACGTTCACGGGTTTGA---G-ATTGTTTAAC---AAAA-CTCGACCCCACTTTGTCAGGCTCGCGAAGACCTTTCCAACAATACCCAACC---T
gi|17 : tttccggcatgtgctacaacataacttaagttcgaggcccgctggcgaccactggtggtcatattttctaaaaatatatatcaacctcaagagctgcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTTCTAACACGTGTTATCAA-TTTT-GACACGAGCTATACAAAAAAGCATAAGTTATTTTTTGAAACGGTAAAAAAATTAACTAGCCTTTATATGACGA
gi|8 : TTTCTGGCACGGGTTACCAA-TTTTTGGCCCAAGCTATACGAAAAAGTATAAGTTATTTTTCGAAACGGT--AAATATAAACTAGCCTTTATTTGACGAGATTGAGCTAATAA------ATTT--TTTTTCTCTAGGTCCCTTATTTCTATTTTTGCCCATGCACGTGCACGGGTTTGA---G-ATTTTTT--TAACAAAA-CTCGACGCCACTTTGTCAGGCTC
gi|10 : TTTCTGGCACGGGTTACCAA-TTTTTGAGCCGAGCTATACGAAAAAGTATAAGTTATTTTTCGAAACGGT--AAAAATAAACTAGCCTTTATTTGACGAGATTGAGCTAAT------ATTTTC--TTTTTCTCTAGGTCCCTTATTTCTATTTTTGCACAT------ACACGGGTTTGA---G-ATTTTTTAAC---AAAA-CTCGACGTCACTTTGTCAGGCT
gi|9 : TTTTTAGC-CGAGATACGAAACTTT-GACCCGAGCTATAGAAAAAAGTATAAGTTATTTTTTCAAACGGT--AAAAATAAACTAGCCTTTATTTGACGAGATAAAGCGAATAAAA--AAAGTT--TTTTTCATTAAGTCCGTGTTTTCTAATTATGCACGTGCACGTGCACGGGTTTGA---G-ATTTTTTAAC---AAAA-CTCGACGCCATCTTGT
gi|11 : TTTCTGGCACGGGTTACTAAATTTT-GACCCGAGCTATACGAAAAAGTATAAGTTATTTTTCGAAACGGT--AAAAATAAACTAGCCTTTATTTGACGAGATTGAGCTAAT---------TTT--TTTTTCTCTAGGTCCCTTATTTCTATGCATGCACcaggc
gi|20 : TTTCTGGCACGTGCTACCA---TTT-GACCTAAGTT
gi|16 : TGAGCTAATAAAAAAACATAT--TTTTACTCTAGGTCTATTATTTCTATTTTTGCACGTGCACAGGCACGGGTCTCC---G-ACTTTTT--T---AAAA-CTCGACGCCACTTTATAAcgaggaccgctggcgacccatggcggccatttttttaaaaa
gi|12 : AA--ATGTATGGTTTCA---TAGGCTTGT-GTTGCGAGTTTTGCACGTGCACGTGCATTGGTTTCA---GATTTTCTg
gi|15 : -TTTTCTA--T---AAAAACTCGACGTCACTTTGTCAGGCTTGCCGATACTTTTCTAATGATACCCAAGT---AGAAAAGATCGGACCGAAATTGGCCGCTTTGTTCATGTTCGAGCCagagaccttttaatgatacactagtcgaaaaaatggactaaaaatggcctctcaactctggttcgagcct
gi|12 : tgagaGAGACCTTTTAA-TGATAC---ACTAGTCGAAAAAAT-GGACTAAAAATGGCCTCTCAACTCTGGTTCGAGCCt
Alignments
lowQualScore : 11 1 4444444444444 1111 11
lowQualScore : 0 0 33 44 44 88888 44 3 3 99 1 1 1 6 6 44 8888888888888 44 0000 0 3 3 6666 6 11 2 6 0 4 4
lowQualScore : . . .. .. .. ..... .. . . .. . . . . . .. ............. .. .... . . . .... . .. . . . . .
lowQualScore : 5 3 77 99 66 33333 66 3 3 66 0 0 0 7 7 66 9999999999999 66 4444 4 1 1 4444 5 00 8 5 2 0 2
consensus : TTTCCGGCACGTGCTACAACATGACCTAAGTTCGAGGCCCGCTGGCGACCCCTGGCGGCC--AT-TTT--TT-----T--AA-AA-AT-AATTGTACCAACCTCAAGAGCTACTCACTACCTGTCGAACCCTTTGTTTTTGTTAAAAACGTCACACGAGTGAGCTCAGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCTGGCACGGGTTACCAA-TTTTTGACCCGAGCTATACGAAAAAGTATAAGTTATTTTTCGAAACGGT--AAAAATAAACTAGCCTTTATTTGACGAGATTGAGCTAAT-AAAAA---A---TTT--TTTTT----CTCTAGGTCCCTTATTTCTATTTTTGCACGTGCACGTGCACGGGTTTGAGA-TT-TTTTAAC-AAAACTCGACGCCACTTTGTCAGGCTCGCCGAGACCTTTNNAATGATACCCAACTTGAAAAAATCGGACCGAAAATGGCCTCTCGGCNCGGGTTCGAGCCCT
Reference ( family-473 ) : TTTCCGGCACGTGCTACAACATGACCTAAGTTCGAGGCCCGCTGGCGACCCCTGGCGGCC--AT-TTT--TT-----T--AA-AA-AT-AATTGTACCAACCTCAAGAGCTACTCANTACCTGTCGAACCCTTTGTTTTTGTTAAAAACGTCACANGAGTGAGCTCAGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCTGGCACGGGTTACCAA-TTTT-GACCCGAGCTATACGAAAAAGTATAAGTTATTTTTCGAAACGGT--AAAAATAAACTAGCCTTTATTTGACGAGATTGAGCTAAT-AAAAA---A---TTT--TTTTT----CTCTAGGTCCCTTATTTCTATTTTTGCACGTGCACGTGCACGGGTTTGAGA-TT-TTTTAAC-AAAACTCGACGCCACTTTGTCAGGCTCGCGGAGACCTTTCNAACGATACCCAACTTGAAAAAATCGGACCGAAAATGGCCTCTCGGCTCGGGTTCGAGCCCT
gi|1 : TTTCCGACACGTGCTACAACATGACCTAAGTTTGAGGCCCGCTGGCGACTCTTTGCGGCC--AC-TTT--TT-----T--AA-AA-ATTAATTGTACCAACCTCAACAGCTACTCACTACCTGTCAAACCCTTTGTTTTTGTTAAAAACGTCACACGAGTGAGCTCAGTAC
gi|1 : TTTTCTAGCACGTGTTACCAA-TTTT-GACCCGAGCTATACAAAAAAGCATAAGTTATTTTTCGAAACGGT--AAAAATAAACTAGCATTTATTTAACGAGATTGAGCTAAT-AAAAAC--A---TAT--TTTTA----CCCTAGGTCTATTATTTCTATTTTTGCACGTGCACAGGCACGGGTTTCAGT-TT-TCTT--T-AAAACTTGACACCACTTTATAAAGTTCGCCGAGACCTTTAAAATGATACCAAACTTGAAAAAATCGAACCGAAAATGGCCTCTCGGCACAGTTTCAAGCCCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttctagcacgtgttaccaattttgacccgagctatacaaaaaagcataagttatttttcgaaacggtaaaaataaactagcatttatttaacgagattgagctaataaaaacatatttttaccctaggtctattatttctatttttgcacgtgcacaggcacgggtttcagttttctttaaaacttgacaccactttataaagttcgccgagacctttaaaatgataccaaacttgaaaaaatcgaaccgaaaatggcctctcggcacagtttcaagccct
gi|10 : tttccgacacgtgctacaacatgacctaagtttgaggcccgctggcgactctttgcggccacttttttaaaaattaattgtaccaacctcaacagctactcactacctgtcaaaccctttgtttttgttaaaaacgtcacacgagtgagctcagtacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTCTGGCACGGGTTACCAA-TTTTTGAGCCGAGCTATACGAAAAAGTATAAGTTATTTTTCGAAACGGT--AAAAATAAACTAGCCTTTATTTGACGAGATTGAGCTAAT---------A---TTTTCTTTTT----CTCTAGGTCCCTTATTTCTATTTT------TGCACATACACGGGTTTGAGA-TT-TTTTAAC-AAAACTCGACGTCACTTTGTCAGGCT
gi|11 : TTTCTGGCACGGGTTACTAAATTTT-GACCCGAGCTATACGAAAAAGTATAAGTTATTTTTCGAAACGGT--AAAAATAAACTAGCCTTTATTTGACGAGATTGAGCTAAT-------------TTT--TTTTT----CTCTAGGTCCCTTATTTCTATGCATGCAC
gi|12 : TTTTGCACGTGCACGTGCATTGGTTTCAGA-TT-TTCTA
gi|12 : aaatgtatggtttcataggcttgtgttgcgagGAGACCTTT-TAATGATACACTAGTCGAAAAAAT-GGACTAAAAATGGCCTCTCAACTCTGGTTCGAGCCgagaccttttaatgatacactagtcgaaaaaatggactaaaaatggcctctcaactctggttcgagcct
gi|13 : aaatgtatggtttcataggcttgtgttgcgagttttgcacgtgcacgtgcattggtttcagattttctaCACATACCAGAACATGACCCAGGTTTGAGGCCCGCTGGAGACCCCTAGCGGCC--AG-ATA--TTAGGAAT--AA-AA-A--AATCGCTTTAGCACCAA---CTAATCAATACCTGCCGAAt
gi|14 : ACCAAAGTTCGAGGCCCGCTGGCGAACCCTGGCGGCC--AT-TTT--TT-----CTAAA-AA-AT-AATTATACCAACCTCAAGAGCTACTCAATACCTGTCGACTTCTGTGTCCGGGTTAAAAATGTCATAAGAtggtacttaaattattaaaa
gi|15 : aTGAGA-TT-TTCTATA-AAAACTCGACGTCACTTTGTCAGGCTTGCCGATACTTTTCTAATGATACCCAAGTAGAAAAGATCGGACCGAAATTGGCCGCTTTGTTCATGTTCGAGCCa
gi|16 : TGAGCTAAT-AAAAA---AACATAT--TTTTA----CTCTAGGTCTATTATTTCTATTTTTGCACGTGCACAGGCACGGGTCTCCGA-CT-TTTT--T-AAAACTCGACGCCACTTTATAAGt
gi|17 : TTTTCTAACACGTGTTATCAA-TTTT-GACACGAGCTATACAAAAAAGCATAAGTTATTTTTTGAAACGGTAAAAAAATTAACTAGCCTTTATATGACGA
gi|18 : TTTCCGGCACGTGCTACAACATAACCTAAGTTCGAGGCCTGCTTGCGACCCCTGGTAGTCATAT-TTT--CT-----T--AA-AA-AA-AAT
gi|19 : TTTCCGGCAGATGCTACAACATGACCTAAGTTCGAGGCCCACTGGCGACCCATAGCGGCC--A---TC--TT-----T--AG-AA-AC-AA
gi|2 : CGACACGTGCTACAAGATGACCTAAGTGTGAGGCCCGCTGGTGACTGTTTGCGGCC--AC-TTT--TT-----A--AA-AAAAT-AATTGTATCAACCTCAAGAGCTACTCACTACCTGTCAAACCCTTTGTTTTTGTTAAAAACGTCACACGAGTGAGCTCAGTACaa
gi|2 : TTTTCTAGCACGTGTTACCAA-TTTT-GACCCGAGTTATACAAAAAA-----AGTTATTTTTCGAAACGGT--AAAAATAAACTAGCCTTTATTTGACGAGATTGAGCTGTT-AAAAA---A---ATA--TTTTTA---CCCTAGGTCTATTATTTCTATTTTTGCACGTGCACAGGCACGGGTTTCATA-TT-TTTTTTTTAAAACTTGACGCAACTTTATATAGTTCGCAGAGACCTTTAAAATGATACCAAACTTGAAAAAATTGAACCAGAAATGGCCTCTCGGCACGGGTTCAAGCCCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttctagcacgtgttaccaattttgacccgagttatacaaaaaaagttatttttcgaaacggtaaaaataaactagcctttatttgacgagattgagctgttaaaaaaatatttttaccctaggtctattatttctatttttgcacgtgcacaggcacgggtttcatattttttttttaaaacttgacgcaactttatatagttcgcagagacctttaaaatgataccaaacttgaaaaaattgaaccagaaatggcctctcggcacgggttcaagccct
gi|20 : cgacacgtgctacaagatgacctaagtgtgaggcccgctggtgactgtttgcggccactttttaaaaaaataattgtatcaacctcaagagctactcactacctgtcaaaccctttgtttttgttaaaaacgtcacacgagtgagctcagtacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTCTGGCACGTGCTACCATTTGACCTAAGTTCGAGGACCGCTGGCGACCCATGGCGGCC--AT-TTT--TT-----T--AA-AA-A
gi|21 : CAACTTGACAAAGGTTCGAGGCCTGCTGGCGACCCCTAGCGGCC--A
gi|22 : gTGACCAAGGTTCGAGGCCTGCTGGCAATCCCTAGCGGCC--Agatatcgaaaataaattagtc
gi|23 : cccaaatACATGATTAAGGTTCAAGGCCCGCTGGCGACCACTAGCGGCC--Aggtatcgggaataaataaag
gi|3 : TTTCCGACACGTGCTACAACATGACGTAAGTTTGAGGCCCGCTGGCGACTCTTTGCGGCC--AT-TTTTTTT-----T--AA-AA-AT-AATTGTACCAACCTCAAGAGCTACTCACTATCTGTCAAACCCTTTGTTTTTGTTAAAAACGTCACgatattggaaataaaaatcgc
gi|3 : TTTTCTAGCACGTGTTACCAA-TTTT-GACCCGAGCTATACAAAAAAGCATAAGTTATTTTTCGAAACGGT--AAAAATAAACTAGCCTTTATTTGACGAGACTGAGCTAAT-AAAAATACA---TAT--TTTTA----CCCTAGGTCTATTATTTCTATCTTTGAACGTGCACAGACACGGGTTTCAGA-TT-TTTT--T-AAAACTTGACGCCACTTTATAAAGTTCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttctagcacgtgttaccaattttgacccgagctatacaaaaaagcataagttatttttcgaaacggtaaaaataaactagcctttatttgacgagactgagctaataaaaatacatatttttaccctaggtctattatttctatctttgaacgtgcacagacacgggtttcagatttttttaaaacttgacgccactttataaagttc
gi|4 : tttccgacacgtgctacaacatgacgtaagtttgaggcccgctggcgactctttgcggccatttttttttaaaaataattgtaccaacctcaagagctactcactatctgtcaaaccctttgtttttgttaaaaacgtcacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTCCGGCATGTGCTACAACATAACTTAAGTTCGAGGCCCGCTGGCGACCACTGGTGGTC--ATATTT--TC-----T--AA-AA-AT-A--TATATCAACCTCAAGAGCTGC
gi|4 : TTTTCTGGCACGGGTTACCAA-TTTT--------------TGA-----------TTATTTT-CGAAACGGT--AAAAATAAACTCGCCTTTATTTGACGAGATTGAGCTA-T-------------TTT--TTTTT----CTCTAGGTCCCTTATTTCTATTTTTGCACATGCACGTTCACGGGTTTGAGA-TT-GTTTAAC-AAAACTCGACCCCACTTTGTCAGGCTCGCGAAGACCTTTCCAACAATACCCAACCTgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttctggcacgggttaccaatttttgattattttcgaaacggtaaaaataaactcgcctttatttgacgagattgagctatttttttttctctaggtcccttatttctatttttgcacatgcacgttcacgggtttgagattgtttaacaaaactcgaccccactttgtcaggctcgcgaagacctttccaacaatacccaacct
gi|5 : tttccggcatgtgctacaacataacttaagttcgaggcccgctggcgaccactggtggtcatattttctaaaaatatatatcaacctcaagagctgcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTACCGGCACGTGCTACAACATAACCTAAGTTCGAGGCCCGCTGGCGACCCCTGGTGGTC--ATATTT--TC-----T--AA-AA-AA-AAATATACCAATCTCAAGAACTAC
gi|5 : TTTTCTAGCACGG-TTATCAA-TTTTTGATCCGAGCTATACGAAAAAGTATAAGTTATTTTTCGATACGGT--AAAAATAAACTAGCCTTCATTTGACGAGATTGAGCTAAT-A-----------TTT--TTTTTTTTACTCTATGTCCCTTATTTCTATTTTTGCACATGCACGTGCACGGGTATGAGA-TT-TTTTAAC-AAAACTCGACGCCACTTTGTCaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttctagcacggttatcaatttttgatccgagctatacgaaaaagtataagttatttttcgatacggtaaaaataaactagccttcatttgacgagattgagctaatatttttttttttactctatgtcccttatttctatttttgcacatgcacgtgcacgggtatgagattttttaacaaaactcgacgccactttgtc
gi|6 : ttaccggcacgtgctacaacataacctaagttcgaggcccgctggcgacccctggtggtcatattttctaaaaaaaaatataccaatctcaagaactacaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTCCGGCACGTGCTACAACATAACCTAAGTTCGAGGCCCGCTGGCGACCCCTGGTTGTC--AGATTT--TC-----T--AACAA-AT-A----TACCAACTTCAAGAGCTAC
gi|6 : TTTTCTGTCACGGGTTACCAA-TTTTTGAACCGTGCTATACGAAAAAGTATAAGTTATTTTTCGAAACGGT--AAAAATAAACTAGCCTTTATTTGACGAGATTGAGCTAAT--------------TT--TTTTT----CTCTAGGTCCCTTATTTCTATTTTTGCACATGCACGTGCACGGGTTTGAGA-TT-TTTTAAC-AAAACTCGACGCCACTTTGTCAGGCTgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttctgtcacgggttaccaatttttgaaccgtgctatacgaaaaagtataagttatttttcgaaacggtaaaaataaactagcctttatttgacgagattgagctaattttttttctctaggtcccttatttctatttttgcacatgcacgtgcacgggtttgagattttttaacaaaactcgacgccactttgtcaggct
gi|7 : tttccggcacgtgctacaacataacctaagttcgaggcccgctggcgacccctggttgtcagattttctaacaaatataccaacttcaagagctacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACAACATAAC------TCGAGGCCCGCTGGCGACCCCTGGTGGTC--ATATTT--TC-----T--AA-AG-A--AAATATACTAACCTCAAGAGCTAC
gi|7 : TTTTATGGCACGGGTAACCAA-TTTTTGATCCGAGCAATACGAAAAAGTAAAAGTTATTTTTCGAAACGGT--AAAAATAAACTCGCCTTTATTTGACCAGATTGAGCTAAT-CAA----------TT--TTTTT----CTCTAGGTCCCTTATTTCTAGTTTTGCACATGCACGTGCACGGGTTTGAGA-TTATTTTAAC-AAAACTCGACGCCACTTTGTCAGGCTCgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttatggcacgggtaaccaatttttgatccgagcaatacgaaaaagtaaaagttatttttcgaaacggtaaaaataaactcgcctttatttgaccagattgagctaatcaatttttttctctaggtcccttatttctagttttgcacatgcacgtgcacgggtttgagattattttaacaaaactcgacgccactttgtcaggctc
gi|8 : acaacataactcgaggcccgctggcgacccctggtggtcatattttctaaagaaaatatactaacctcaagagctacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTCTGGCACGGGTTACCAA-TTTTTGGCCCAAGCTATACGAAAAAGTATAAGTTATTTTTCGAAACGGT--AAATATAAACTAGCCTTTATTTGACGAGATTGAGCTAAT----AA---A---TTT--TTTTT----CTCTAGGTCCCTTATTTCTATTTTTGCCCATGCACGTGCACGGGTTTGAGATTT-TTTTAAC-AAAACTCGACGCCACTTTGTCAGGCTC
gi|9 : TTTTTAGC-CGAGATACGAAACTTT-GACCCGAGCTATAGAAAAAAGTATAAGTTATTTTTTCAAACGGT--AAAAATAAACTAGCCTTTATTTGACGAGATAAAGCGAATAAAAAA---A---GTT--TTTTT----CATTAAGTCCGTGTTTTCTAATTATGCACGTGCACGTGCACGGGTTTGAGA-TT-TTTTAAC-AAAACTCGACGCCATCTTGTCAGGC
Alignments
lowQualScore : 11 5555555555555
lowQualScore : 0 0 33 44 44 88888 44 3 3 99 1 7 1 44 2222222222222 44 7777 0 6 3 55 2 99 6 0 1 4
lowQualScore : . . .. .. .. ..... .. . . .. . . . .. ............. .. .... . . . .. . .. . . . .
lowQualScore : 5 3 77 99 66 33333 66 3 3 66 0 3 0 66 2222222222222 66 1111 4 2 1 66 5 88 5 2 0 2
consensus : TTTCCGGCACGTGCTACAACATGACCTAAGTTCGAGGCCCGCTGGCGACCCCTGGCGGCC--AT-TTT--TT-----T--AA-AA-AT-AATTGTACCAACCTCAAGAGCTACTCACTACCTGTCGAACCCTTTGTTTTTGTTAAAAACGTCACACGAGTGAGCTCAGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCTGGCACGGGTTACCAATTTTTGACCCGAGCTATACGAAAAAGTATAAGTTATTTTTCGAAACGGT--AAAAATAAACTAGCCTTTATTTGACGAGATTGAGCTAAT-AAAAA---A---TTT--TTTTT----CTCTAGGTCCCTTATTTCTATTTTTGCACGTGCACGTGCACGGGTTTGAGA-TT-TTTTAACAAAACTCGACGCCACTTTGTCAGGCTCGCCGAGACCTTTNNAATGATACCCAACTTGAAAAAATCGGACCGAAAATGGCCTCTCGGCNCGGGTTCGAGCCCT
Reference ( family-473 ) : TTTCCGGCACGTGCTACAACATGACCTAAGTTCGAGGCCCGCTGGCGACCCCTGGCGGCC--AT-TTT--TT-----T--AA-AA-AT-AATTGTACCAACCTCAAGAGCTACTCACTACCTGTCGAACCCTTTGTTTTTGTTAAAAACGTCACACGAGTGAGCTCAGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCTGGCACGGGTTACCAATTTTTGACCCGAGCTATACGAAAAAGTATAAGTTATTTTTCGAAACGGT--AAAAATAAACTAGCCTTTATTTGACGAGATTGAGCTAAT-AAAAA---A---TTT--TTTTT----CTCTAGGTCCCTTATTTCTATTTTTGCACGTGCACGTGCACGGGTTTGAGA-TT-TTTTAACAAAACTCGACGCCACTTTGTCAGGCTCGCCGAGACCTTTNNAATGATACCCAACTTGAAAAAATCGGACCGAAAATGGCCTCTCGGCNCGGGTTCGAGCCCT
gi|1 : TTTCCGACACGTGCTACAACATGACCTAAGTTTGAGGCCCGCTGGCGACTCTTTGCGGCC--AC-TTT--TT-----T--AA-AA-ATTAATTGTACCAACCTCAACAGCTACTCACTACCTGTCAAACCCTTTGTTTTTGTTAAAAACGTCACACGAGTGAGCTCAGTAC
gi|1 : TTTTCTAGCACGTGTTACCAATTTT-GACCCGAGCTATACAAAAAAGCATAAGTTATTTTTCGAAACGGT--AAAAATAAACTAGCATTTATTTAACGAGATTGAGCTAAT-AAAAAC--A---TAT--TTTTA----CCCTAGGTCTATTATTTCTATTTTTGCACGTGCACAGGCACGGGTTTCAGT-TT-TCTT--TAAAACTTGACACCACTTTATAAAGTTCGCCGAGACCTTTAAAATGATACCAAACTTGAAAAAATCGAACCGAAAATGGCCTCTCGGCACAGTTTCAAGCCCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttctagcacgtgttaccaattttgacccgagctatacaaaaaagcataagttatttttcgaaacggtaaaaataaactagcatttatttaacgagattgagctaataaaaacatatttttaccctaggtctattatttctatttttgcacgtgcacaggcacgggtttcagttttctttaaaacttgacaccactttataaagttcgccgagacctttaaaatgataccaaacttgaaaaaatcgaaccgaaaatggcctctcggcacagtttcaagccct
gi|10 : tttccgacacgtgctacaacatgacctaagtttgaggcccgctggcgactctttgcggccacttttttaaaaattaattgtaccaacctcaacagctactcactacctgtcaaaccctttgtttttgttaaaaacgtcacacgagtgagctcagtacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTCTGGCACGGGTTACCAATTTTTGAGCCGAGCTATACGAAAAAGTATAAGTTATTTTTCGAAACGGT--AAAAATAAACTAGCCTTTATTTGACGAGATTGAGCTAAT---------A---TTTTCTTTTT----CTCTAGGTCCCTTATTTCTATTTT------TGCACATACACGGGTTTGAGA-TT-TTTTAACAAAACTCGACGTCACTTTGTCAGGCT
gi|11 : TTTCTGGCACGGGTTACTAAATTTTGACCCGAGCTATACGAAAAAGTATAAGTTATTTTTCGAAACGGT--AAAAATAAACTAGCCTTTATTTGACGAGATTGAGCTAAT-------------TTT--TTTTT----CTCTAGGTCCCTTATTTCTATGCATGCAC
gi|12 : TTTTGCACGTGCACGTGCATTGGTTTCAGA-TT-TTCTA
gi|12 : aaatgtatggtttcataggcttgtgttgcgagGAGACCTTTT-AATGATACACTAGTCGAAAAAAT-GGACTAAAAATGGCCTCTCAACTCTGGTTCGAGCCgagaccttttaatgatacactagtcgaaaaaatggactaaaaatggcctctcaactctggttcgagcct
gi|13 : aaatgtatggtttcataggcttgtgttgcgagttttgcacgtgcacgtgcattggtttcagattttctaCACATACCAGAACATGACCCAGGTTTGAGGCCCGCTGGAGACCCCTAGCGGCC--AG-ATA--TTAGGAAT--AA-AA-A--AATCGCTTTAGCACCAA---CTAATCAATACCTGCCGAAt
gi|14 : ACCAAAGTTCGAGGCCCGCTGGCGAACCCTGGCGGCC--AT-TTT--TT-----CTAAA-AA-AT-AATTATACCAACCTCAAGAGCTACTCAATACCTGTCGACTTCTGTGTCCGGGTTAAAAATGTCATAAGAtggtacttaaattattaaaa
gi|15 : aTGAGA-TT-TTCTATAAAAACTCGACGTCACTTTGTCAGGCTTGCCGATACTTTTCTAATGATACCCAAGTAGAAAAGATCGGACCGAAATTGGCCGCTTTGTTCATGTTCGAGCCa
gi|16 : TGAGCTAAT-AAAAA---AACATAT--TTTTA----CTCTAGGTCTATTATTTCTATTTTTGCACGTGCACAGGCACGGGTCTCCGA-CT-TTTT--TAAAACTCGACGCCACTTTATAAGt
gi|17 : TTTTCTAACACGTGTTATCAATTTT-GACACGAGCTATACAAAAAAGCATAAGTTATTTTTTGAAACGGTAAAAAAATTAACTAGCCTTTATATGACGA
gi|18 : TTTCCGGCACGTGCTACAACATAACCTAAGTTCGAGGCCTGCTTGCGACCCCTGGTAGTCATAT-TTT--CT-----T--AA-AA-AA-AAT
gi|19 : TTTCCGGCAGATGCTACAACATGACCTAAGTTCGAGGCCCACTGGCGACCCATAGCGGCC--A---TC--TT-----T--AG-AA-AC-AA
gi|2 : CGACACGTGCTACAAGATGACCTAAGTGTGAGGCCCGCTGGTGACTGTTTGCGGCC--AC-TTT--TT-----A--AA-AAAAT-AATTGTATCAACCTCAAGAGCTACTCACTACCTGTCAAACCCTTTGTTTTTGTTAAAAACGTCACACGAGTGAGCTCAGTACaa
gi|2 : TTTTCTAGCACGTGTTACCAATTTT-GACCCGAGTTATACAAAAA-----AAGTTATTTTTCGAAACGGT--AAAAATAAACTAGCCTTTATTTGACGAGATTGAGCTGTTAAAAAA---A---TAT--TTTTA----CCCTAGGTCTATTATTTCTATTTTTGCACGTGCACAGGCACGGGTTTCATATTT-TTTTTTTAAAACTTGACGCAACTTTATATAGTTCGCAGAGACCTTTAAAATGATACCAAACTTGAAAAAATTGAACCAGAAATGGCCTCTCGGCACGGGTTCAAGCCCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttctagcacgtgttaccaattttgacccgagttatacaaaaaaagttatttttcgaaacggtaaaaataaactagcctttatttgacgagattgagctgttaaaaaaatatttttaccctaggtctattatttctatttttgcacgtgcacaggcacgggtttcatattttttttttaaaacttgacgcaactttatatagttcgcagagacctttaaaatgataccaaacttgaaaaaattgaaccagaaatggcctctcggcacgggttcaagccct
gi|20 : cgacacgtgctacaagatgacctaagtgtgaggcccgctggtgactgtttgcggccactttttaaaaaaataattgtatcaacctcaagagctactcactacctgtcaaaccctttgtttttgttaaaaacgtcacacgagtgagctcagtacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTCTGGCACGTGCTACCATTTGACCTAAGTTCGAGGACCGCTGGCGACCCATGGCGGCC--AT-TTT--TT-----T--AA-AA-A
gi|21 : CAACTTGACAAAGGTTCGAGGCCTGCTGGCGACCCCTAGCGGCC--A
gi|22 : gTGACCAAGGTTCGAGGCCTGCTGGCAATCCCTAGCGGCC--Agatatcgaaaataaattagtc
gi|23 : cccaaatACATGATTAAGGTTCAAGGCCCGCTGGCGACCACTAGCGGCC--Aggtatcgggaataaataaag
gi|3 : TTTCCGACACGTGCTACAACATGACGTAAGTTTGAGGCCCGCTGGCGACTCTTTGCGGCC--AT-TTTTTTT-----T--AA-AA-AT-AATTGTACCAACCTCAAGAGCTACTCACTATCTGTCAAACCCTTTGTTTTTGTTAAAAACGTCACgatattggaaataaaaatcgc
gi|3 : TTTTCTAGCACGTGTTACCAATTTT-GACCCGAGCTATACAAAAAAGCATAAGTTATTTTTCGAAACGGT--AAAAATAAACTAGCCTTTATTTGACGAGACTGAGCTAAT-AAAAATACA---TAT--TTTTA----CCCTAGGTCTATTATTTCTATCTTTGAACGTGCACAGACACGGGTTTCAGA-TT-TTTT--TAAAACTTGACGCCACTTTATAAAGTTCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttctagcacgtgttaccaattttgacccgagctatacaaaaaagcataagttatttttcgaaacggtaaaaataaactagcctttatttgacgagactgagctaataaaaatacatatttttaccctaggtctattatttctatctttgaacgtgcacagacacgggtttcagatttttttaaaacttgacgccactttataaagttc
gi|4 : tttccgacacgtgctacaacatgacgtaagtttgaggcccgctggcgactctttgcggccatttttttttaaaaataattgtaccaacctcaagagctactcactatctgtcaaaccctttgtttttgttaaaaacgtcacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTCCGGCATGTGCTACAACATAACTTAAGTTCGAGGCCCGCTGGCGACCACTGGTGGTC--ATATTT--TC-----T--AA-AA-AT-A--TATATCAACCTCAAGAGCTGC
gi|4 : TTTTCTGGCACGGGTTACCAATTTTTGA-------------------------TTATTTT-CGAAACGGT--AAAAATAAACTCGCCTTTATTTGACGAGATTGAGCTA-T-------------TTT--TTTTT----CTCTAGGTCCCTTATTTCTATTTTTGCACATGCACGTTCACGGGTTTGAGA-TT-GTTTAACAAAACTCGACCCCACTTTGTCAGGCTCGCGAAGACCTTTCCAACAATACCCAACCTgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttctggcacgggttaccaatttttgattattttcgaaacggtaaaaataaactcgcctttatttgacgagattgagctatttttttttctctaggtcccttatttctatttttgcacatgcacgttcacgggtttgagattgtttaacaaaactcgaccccactttgtcaggctcgcgaagacctttccaacaatacccaacct
gi|5 : tttccggcatgtgctacaacataacttaagttcgaggcccgctggcgaccactggtggtcatattttctaaaaatatatatcaacctcaagagctgcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTACCGGCACGTGCTACAACATAACCTAAGTTCGAGGCCCGCTGGCGACCCCTGGTGGTC--ATATTT--TC-----T--AA-AA-AA-AAATATACCAATCTCAAGAACTAC
gi|5 : TTTTCTAGCACGG-TTATCAATTTTTGATCCGAGCTATACGAAAAAGTATAAGTTATTTTTCGATACGGT--AAAAATAAACTAGCCTTCATTTGACGAGATTGAGCTAAT---------A---TTT--TTTTTTTTACTCTATGTCCCTTATTTCTATTTTTGCACATGCACGTGCACGGGTATGAGA-TT-TTTTAACAAAACTCGACGCCACTTTGTCaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttctagcacggttatcaatttttgatccgagctatacgaaaaagtataagttatttttcgatacggtaaaaataaactagccttcatttgacgagattgagctaatatttttttttttactctatgtcccttatttctatttttgcacatgcacgtgcacgggtatgagattttttaacaaaactcgacgccactttgtc
gi|6 : ttaccggcacgtgctacaacataacctaagttcgaggcccgctggcgacccctggtggtcatattttctaaaaaaaaatataccaatctcaagaactacaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTCCGGCACGTGCTACAACATAACCTAAGTTCGAGGCCCGCTGGCGACCCCTGGTTGTC--AGATTT--TC-----T--AACAA-AT-A----TACCAACTTCAAGAGCTAC
gi|6 : TTTTCTGTCACGGGTTACCAATTTTTGAACCGTGCTATACGAAAAAGTATAAGTTATTTTTCGAAACGGT--AAAAATAAACTAGCCTTTATTTGACGAGATTGAGCTAAT--------------TT--TTTTT----CTCTAGGTCCCTTATTTCTATTTTTGCACATGCACGTGCACGGGTTTGAGA-TT-TTTTAACAAAACTCGACGCCACTTTGTCAGGCTgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttctgtcacgggttaccaatttttgaaccgtgctatacgaaaaagtataagttatttttcgaaacggtaaaaataaactagcctttatttgacgagattgagctaattttttttctctaggtcccttatttctatttttgcacatgcacgtgcacgggtttgagattttttaacaaaactcgacgccactttgtcaggct
gi|7 : tttccggcacgtgctacaacataacctaagttcgaggcccgctggcgacccctggttgtcagattttctaacaaatataccaacttcaagagctacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACAACATAAC------TCGAGGCCCGCTGGCGACCCCTGGTGGTC--ATATTT--TC-----T--AA-AG-A--AAATATACTAACCTCAAGAGCTAC
gi|7 : TTTTATGGCACGGGTAACCAATTTTTGATCCGAGCAATACGAAAAAGTAAAAGTTATTTTTCGAAACGGT--AAAAATAAACTCGCCTTTATTTGACCAGATTGAGCTAAT-CAA----------TT--TTTTT----CTCTAGGTCCCTTATTTCTAGTTTTGCACATGCACGTGCACGGGTTTGAGA-TTATTTTAACAAAACTCGACGCCACTTTGTCAGGCTCgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttatggcacgggtaaccaatttttgatccgagcaatacgaaaaagtaaaagttatttttcgaaacggtaaaaataaactcgcctttatttgaccagattgagctaatcaatttttttctctaggtcccttatttctagttttgcacatgcacgtgcacgggtttgagattattttaacaaaactcgacgccactttgtcaggctc
gi|8 : acaacataactcgaggcccgctggcgacccctggtggtcatattttctaaagaaaatatactaacctcaagagctacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTCTGGCACGGGTTACCAATTTTTGGCCCAAGCTATACGAAAAAGTATAAGTTATTTTTCGAAACGGT--AAATATAAACTAGCCTTTATTTGACGAGATTGAGCTAAT----AA---A---TTT--TTTTT----CTCTAGGTCCCTTATTTCTATTTTTGCCCATGCACGTGCACGGGTTTGAGATTT-TTTTAACAAAACTCGACGCCACTTTGTCAGGCTC
gi|9 : TTTTTAGC-CGAGATACGAAACTTTGACCCGAGCTATAGAAAAAAGTATAAGTTATTTTTTCAAACGGT--AAAAATAAACTAGCCTTTATTTGACGAGATAAAGCGAATAAAAAA---A---GTT--TTTTT----CATTAAGTCCGTGTTTTCTAATTATGCACGTGCACGTGCACGGGTTTGAGA-TT-TTTTAACAAAACTCGACGCCATCTTGTCAGGC
Alignments
lowQualScore : 11 5555555555555
lowQualScore : 0 0 33 44 44 88888 44 3 3 99 1 7 1 44 2222222222222 44 7777 0 6 3 55 2 99 6 0 1 4
lowQualScore : . . .. .. .. ..... .. . . .. . . . .. ............. .. .... . . . .. . .. . . . .
lowQualScore : 5 3 77 99 66 33333 66 3 3 66 0 3 0 66 2222222222222 66 1111 4 2 1 66 5 88 5 2 0 2
consensus : TTTCCGGCACGTGCTACAACATGACCTAAGTTCGAGGCCCGCTGGCGACCCCTGGCGGCC--AT-TTT--TT-----T--AA-AA-AT-AATTGTACCAACCTCAAGAGCTACTCACTACCTGTCGAACCCTTTGTTTTTGTTAAAAACGTCACACGAGTGAGCTCAGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCTGGCACGGGTTACCAATTTTTGACCCGAGCTATACGAAAAAGTATAAGTTATTTTTCGAAACGGT--AAAAATAAACTAGCCTTTATTTGACGAGATTGAGCTAAT-AAAAA---A---TTT--TTTTT----CTCTAGGTCCCTTATTTCTATTTTTGCACGTGCACGTGCACGGGTTTGAGA-TT-TTTTAACAAAACTCGACGCCACTTTGTCAGGCTCGCCGAGACCTTTNNAATGATACCCAACTTGAAAAAATCGGACCGAAAATGGCCTCTCGGCNCGGGTTCGAGCCCT
Reference ( family-473 ) : TTTCCGGCACGTGCTACAACATGACCTAAGTTCGAGGCCCGCTGGCGACCCCTGGCGGCC--AT-TTT--TT-----T--AA-AA-AT-AATTGTACCAACCTCAAGAGCTACTCACTACCTGTCGAACCCTTTGTTTTTGTTAAAAACGTCACACGAGTGAGCTCAGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCTGGCACGGGTTACCAATTTTTGACCCGAGCTATACGAAAAAGTATAAGTTATTTTTCGAAACGGT--AAAAATAAACTAGCCTTTATTTGACGAGATTGAGCTAAT-AAAAA---A---TTT--TTTTT----CTCTAGGTCCCTTATTTCTATTTTTGCACGTGCACGTGCACGGGTTTGAGA-TT-TTTTAACAAAACTCGACGCCACTTTGTCAGGCTCGCCGAGACCTTTNNAATGATACCCAACTTGAAAAAATCGGACCGAAAATGGCCTCTCGGCNCGGGTTCGAGCCCT
gi|1 : TTTCCGACACGTGCTACAACATGACCTAAGTTTGAGGCCCGCTGGCGACTCTTTGCGGCC--AC-TTT--TT-----T--AA-AA-ATTAATTGTACCAACCTCAACAGCTACTCACTACCTGTCAAACCCTTTGTTTTTGTTAAAAACGTCACACGAGTGAGCTCAGTAC
gi|1 : TTTTCTAGCACGTGTTACCAATTTT-GACCCGAGCTATACAAAAAAGCATAAGTTATTTTTCGAAACGGT--AAAAATAAACTAGCATTTATTTAACGAGATTGAGCTAAT-AAAAAC--A---TAT--TTTTA----CCCTAGGTCTATTATTTCTATTTTTGCACGTGCACAGGCACGGGTTTCAGT-TT-TCTT--TAAAACTTGACACCACTTTATAAAGTTCGCCGAGACCTTTAAAATGATACCAAACTTGAAAAAATCGAACCGAAAATGGCCTCTCGGCACAGTTTCAAGCCCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttctagcacgtgttaccaattttgacccgagctatacaaaaaagcataagttatttttcgaaacggtaaaaataaactagcatttatttaacgagattgagctaataaaaacatatttttaccctaggtctattatttctatttttgcacgtgcacaggcacgggtttcagttttctttaaaacttgacaccactttataaagttcgccgagacctttaaaatgataccaaacttgaaaaaatcgaaccgaaaatggcctctcggcacagtttcaagccct
gi|10 : tttccgacacgtgctacaacatgacctaagtttgaggcccgctggcgactctttgcggccacttttttaaaaattaattgtaccaacctcaacagctactcactacctgtcaaaccctttgtttttgttaaaaacgtcacacgagtgagctcagtacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTCTGGCACGGGTTACCAATTTTTGAGCCGAGCTATACGAAAAAGTATAAGTTATTTTTCGAAACGGT--AAAAATAAACTAGCCTTTATTTGACGAGATTGAGCTAAT---------A---TTTTCTTTTT----CTCTAGGTCCCTTATTTCTATTTT------TGCACATACACGGGTTTGAGA-TT-TTTTAACAAAACTCGACGTCACTTTGTCAGGCT
gi|11 : TTTCTGGCACGGGTTACTAAATTTTGACCCGAGCTATACGAAAAAGTATAAGTTATTTTTCGAAACGGT--AAAAATAAACTAGCCTTTATTTGACGAGATTGAGCTAAT-------------TTT--TTTTT----CTCTAGGTCCCTTATTTCTATGCATGCAC
gi|12 : TTTTGCACGTGCACGTGCATTGGTTTCAGA-TT-TTCTA
gi|12 : aaatgtatggtttcataggcttgtgttgcgagGAGACCTTTT-AATGATACACTAGTCGAAAAAAT-GGACTAAAAATGGCCTCTCAACTCTGGTTCGAGCCgagaccttttaatgatacactagtcgaaaaaatggactaaaaatggcctctcaactctggttcgagcct
gi|13 : aaatgtatggtttcataggcttgtgttgcgagttttgcacgtgcacgtgcattggtttcagattttctaCACATACCAGAACATGACCCAGGTTTGAGGCCCGCTGGAGACCCCTAGCGGCC--AG-ATA--TTAGGAAT--AA-AA-A--AATCGCTTTAGCACCAA---CTAATCAATACCTGCCGAAt
gi|14 : ACCAAAGTTCGAGGCCCGCTGGCGAACCCTGGCGGCC--AT-TTT--TT-----CTAAA-AA-AT-AATTATACCAACCTCAAGAGCTACTCAATACCTGTCGACTTCTGTGTCCGGGTTAAAAATGTCATAAGAtggtacttaaattattaaaa
gi|15 : aTGAGA-TT-TTCTATAAAAACTCGACGTCACTTTGTCAGGCTTGCCGATACTTTTCTAATGATACCCAAGTAGAAAAGATCGGACCGAAATTGGCCGCTTTGTTCATGTTCGAGCCa
gi|16 : TGAGCTAAT-AAAAA---AACATAT--TTTTA----CTCTAGGTCTATTATTTCTATTTTTGCACGTGCACAGGCACGGGTCTCCGA-CT-TTTT--TAAAACTCGACGCCACTTTATAAGt
gi|17 : TTTTCTAACACGTGTTATCAATTTT-GACACGAGCTATACAAAAAAGCATAAGTTATTTTTTGAAACGGTAAAAAAATTAACTAGCCTTTATATGACGA
gi|18 : TTTCCGGCACGTGCTACAACATAACCTAAGTTCGAGGCCTGCTTGCGACCCCTGGTAGTCATAT-TTT--CT-----T--AA-AA-AA-AAT
gi|19 : TTTCCGGCAGATGCTACAACATGACCTAAGTTCGAGGCCCACTGGCGACCCATAGCGGCC--A---TC--TT-----T--AG-AA-AC-AA
gi|2 : CGACACGTGCTACAAGATGACCTAAGTGTGAGGCCCGCTGGTGACTGTTTGCGGCC--AC-TTT--TT-----A--AA-AAAAT-AATTGTATCAACCTCAAGAGCTACTCACTACCTGTCAAACCCTTTGTTTTTGTTAAAAACGTCACACGAGTGAGCTCAGTACaa
gi|2 : TTTTCTAGCACGTGTTACCAATTTT-GACCCGAGTTATACAAAAA-----AAGTTATTTTTCGAAACGGT--AAAAATAAACTAGCCTTTATTTGACGAGATTGAGCTGTTAAAAAA---A---TAT--TTTTA----CCCTAGGTCTATTATTTCTATTTTTGCACGTGCACAGGCACGGGTTTCATATTT-TTTTTTTAAAACTTGACGCAACTTTATATAGTTCGCAGAGACCTTTAAAATGATACCAAACTTGAAAAAATTGAACCAGAAATGGCCTCTCGGCACGGGTTCAAGCCCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttctagcacgtgttaccaattttgacccgagttatacaaaaaaagttatttttcgaaacggtaaaaataaactagcctttatttgacgagattgagctgttaaaaaaatatttttaccctaggtctattatttctatttttgcacgtgcacaggcacgggtttcatattttttttttaaaacttgacgcaactttatatagttcgcagagacctttaaaatgataccaaacttgaaaaaattgaaccagaaatggcctctcggcacgggttcaagccct
gi|20 : cgacacgtgctacaagatgacctaagtgtgaggcccgctggtgactgtttgcggccactttttaaaaaaataattgtatcaacctcaagagctactcactacctgtcaaaccctttgtttttgttaaaaacgtcacacgagtgagctcagtacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTCTGGCACGTGCTACCATTTGACCTAAGTTCGAGGACCGCTGGCGACCCATGGCGGCC--AT-TTT--TT-----T--AA-AA-A
gi|21 : CAACTTGACAAAGGTTCGAGGCCTGCTGGCGACCCCTAGCGGCC--A
gi|22 : gTGACCAAGGTTCGAGGCCTGCTGGCAATCCCTAGCGGCC--Agatatcgaaaataaattagtc
gi|23 : cccaaatACATGATTAAGGTTCAAGGCCCGCTGGCGACCACTAGCGGCC--Aggtatcgggaataaataaag
gi|3 : TTTCCGACACGTGCTACAACATGACGTAAGTTTGAGGCCCGCTGGCGACTCTTTGCGGCC--AT-TTTTTTT-----T--AA-AA-AT-AATTGTACCAACCTCAAGAGCTACTCACTATCTGTCAAACCCTTTGTTTTTGTTAAAAACGTCACgatattggaaataaaaatcgc
gi|3 : TTTTCTAGCACGTGTTACCAATTTT-GACCCGAGCTATACAAAAAAGCATAAGTTATTTTTCGAAACGGT--AAAAATAAACTAGCCTTTATTTGACGAGACTGAGCTAAT-AAAAATACA---TAT--TTTTA----CCCTAGGTCTATTATTTCTATCTTTGAACGTGCACAGACACGGGTTTCAGA-TT-TTTT--TAAAACTTGACGCCACTTTATAAAGTTCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttctagcacgtgttaccaattttgacccgagctatacaaaaaagcataagttatttttcgaaacggtaaaaataaactagcctttatttgacgagactgagctaataaaaatacatatttttaccctaggtctattatttctatctttgaacgtgcacagacacgggtttcagatttttttaaaacttgacgccactttataaagttc
gi|4 : tttccgacacgtgctacaacatgacgtaagtttgaggcccgctggcgactctttgcggccatttttttttaaaaataattgtaccaacctcaagagctactcactatctgtcaaaccctttgtttttgttaaaaacgtcacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTCCGGCATGTGCTACAACATAACTTAAGTTCGAGGCCCGCTGGCGACCACTGGTGGTC--ATATTT--TC-----T--AA-AA-AT-A--TATATCAACCTCAAGAGCTGC
gi|4 : TTTTCTGGCACGGGTTACCAATTTTTGA-------------------------TTATTTT-CGAAACGGT--AAAAATAAACTCGCCTTTATTTGACGAGATTGAGCTA-T-------------TTT--TTTTT----CTCTAGGTCCCTTATTTCTATTTTTGCACATGCACGTTCACGGGTTTGAGA-TT-GTTTAACAAAACTCGACCCCACTTTGTCAGGCTCGCGAAGACCTTTCCAACAATACCCAACCTgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttctggcacgggttaccaatttttgattattttcgaaacggtaaaaataaactcgcctttatttgacgagattgagctatttttttttctctaggtcccttatttctatttttgcacatgcacgttcacgggtttgagattgtttaacaaaactcgaccccactttgtcaggctcgcgaagacctttccaacaatacccaacct
gi|5 : tttccggcatgtgctacaacataacttaagttcgaggcccgctggcgaccactggtggtcatattttctaaaaatatatatcaacctcaagagctgcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTACCGGCACGTGCTACAACATAACCTAAGTTCGAGGCCCGCTGGCGACCCCTGGTGGTC--ATATTT--TC-----T--AA-AA-AA-AAATATACCAATCTCAAGAACTAC
gi|5 : TTTTCTAGCACGG-TTATCAATTTTTGATCCGAGCTATACGAAAAAGTATAAGTTATTTTTCGATACGGT--AAAAATAAACTAGCCTTCATTTGACGAGATTGAGCTAAT---------A---TTT--TTTTTTTTACTCTATGTCCCTTATTTCTATTTTTGCACATGCACGTGCACGGGTATGAGA-TT-TTTTAACAAAACTCGACGCCACTTTGTCaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttctagcacggttatcaatttttgatccgagctatacgaaaaagtataagttatttttcgatacggtaaaaataaactagccttcatttgacgagattgagctaatatttttttttttactctatgtcccttatttctatttttgcacatgcacgtgcacgggtatgagattttttaacaaaactcgacgccactttgtc
gi|6 : ttaccggcacgtgctacaacataacctaagttcgaggcccgctggcgacccctggtggtcatattttctaaaaaaaaatataccaatctcaagaactacaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTCCGGCACGTGCTACAACATAACCTAAGTTCGAGGCCCGCTGGCGACCCCTGGTTGTC--AGATTT--TC-----T--AACAA-AT-A----TACCAACTTCAAGAGCTAC
gi|6 : TTTTCTGTCACGGGTTACCAATTTTTGAACCGTGCTATACGAAAAAGTATAAGTTATTTTTCGAAACGGT--AAAAATAAACTAGCCTTTATTTGACGAGATTGAGCTAAT--------------TT--TTTTT----CTCTAGGTCCCTTATTTCTATTTTTGCACATGCACGTGCACGGGTTTGAGA-TT-TTTTAACAAAACTCGACGCCACTTTGTCAGGCTgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttctgtcacgggttaccaatttttgaaccgtgctatacgaaaaagtataagttatttttcgaaacggtaaaaataaactagcctttatttgacgagattgagctaattttttttctctaggtcccttatttctatttttgcacatgcacgtgcacgggtttgagattttttaacaaaactcgacgccactttgtcaggct
gi|7 : tttccggcacgtgctacaacataacctaagttcgaggcccgctggcgacccctggttgtcagattttctaacaaatataccaacttcaagagctacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACAACATAAC------TCGAGGCCCGCTGGCGACCCCTGGTGGTC--ATATTT--TC-----T--AA-AG-A--AAATATACTAACCTCAAGAGCTAC
gi|7 : TTTTATGGCACGGGTAACCAATTTTTGATCCGAGCAATACGAAAAAGTAAAAGTTATTTTTCGAAACGGT--AAAAATAAACTCGCCTTTATTTGACCAGATTGAGCTAAT-CAA----------TT--TTTTT----CTCTAGGTCCCTTATTTCTAGTTTTGCACATGCACGTGCACGGGTTTGAGA-TTATTTTAACAAAACTCGACGCCACTTTGTCAGGCTCgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttatggcacgggtaaccaatttttgatccgagcaatacgaaaaagtaaaagttatttttcgaaacggtaaaaataaactcgcctttatttgaccagattgagctaatcaatttttttctctaggtcccttatttctagttttgcacatgcacgtgcacgggtttgagattattttaacaaaactcgacgccactttgtcaggctc
gi|8 : acaacataactcgaggcccgctggcgacccctggtggtcatattttctaaagaaaatatactaacctcaagagctacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTCTGGCACGGGTTACCAATTTTTGGCCCAAGCTATACGAAAAAGTATAAGTTATTTTTCGAAACGGT--AAATATAAACTAGCCTTTATTTGACGAGATTGAGCTAAT----AA---A---TTT--TTTTT----CTCTAGGTCCCTTATTTCTATTTTTGCCCATGCACGTGCACGGGTTTGAGATTT-TTTTAACAAAACTCGACGCCACTTTGTCAGGCTC
gi|9 : TTTTTAGC-CGAGATACGAAACTTTGACCCGAGCTATAGAAAAAAGTATAAGTTATTTTTTCAAACGGT--AAAAATAAACTAGCCTTTATTTGACGAGATAAAGCGAATAAAAAA---A---GTT--TTTTT----CATTAAGTCCGTGTTTTCTAATTATGCACGTGCACGTGCACGGGTTTGAGA-TT-TTTTAACAAAACTCGACGCCATCTTGTCAGGC
blockSeqs : AT TA TT AGGAA TA C A T T T G AA AAAAAAACA TC TTTA T A AA C CT C T T
blockSeqs : . TA . . . . . A T T C . AAAAATACA . . T . AT A AA T T A
blockSeqs : . GA . . . . . C T T C . AAAAAAA . . . . TT G CC . A G
blockSeqs : . TA . . . . . T T T C . AAAAAAA . . . . AA T
blockSeqs : . G . . . . . T T T C . CAA . . . . AA
blockSeqs : . T . . . . . T A T T . AAA . . . . AA
blockSeqs : . T . . . . . A A T A . A . . . . AA
blockSeqs : . C . . . . . T . T T . A . . . . AA
blockSeqs : . T . . . . . . . . C . . . . . . AA
blockSeqs : . T . . . . . . . C . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . .
blockSeqs : .
blockSeqs : .
blockSeqCons : T* AAA********** AA
originalCons : TTTCCGGCACGTGCTACAACATGACCTAAGTTCGAGGCCCGCTGGCGACCCCTGGCGGCC--AT-TTT--TT-----T--AA-AA-AT-AATTGTACCAACCTCAAGAGCTACTCACTACCTGTCGAACCCTTTGTTTTTGTTAAAAACGTCACACGAGTGAGCTCAGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCTGGCACGGGTTACCAATTTTTGACCCGAGCTATACGAAAAAGTATAAGTTATTTTTCGAAACGGT--AAAAATAAACTAGCCTTTATTTGACGAGATTGAGCTAAT-AAAAA---A---TTT--TTTTT----CTCTAGGTCCCTTATTTCTATTTTTGCACGTGCACGTGCACGGGTTTGAGA-TT-TTTTAACAAAACTCGACGCCACTTTGTCAGGCTCGCCGAGACCTTTNNAATGATACCCAACTTGAAAAAATCGGACCGAAAATGGCCTCTCGGCNCGGGTTCGAGCCCT
finalCons : TTTCCGGCACGTGCTACAACATGACCTAAGTTCGAGGCCCGCTGGCGACCCCTGGCGGCC--AT-TTT--TT-----T--AA-AA-AT-AATTGTACCAACCTCAAGAGCTACTCACTACCTGTCGAACCCTTTGTTTTTGTTAAAAACGTCACACGAGTGAGCTCAGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCTGGCACGGGTTACCAATTTTTGACCCGAGCTATACGAAAAAGTATAAGTTATTTTTCGAAACGGT--AAAAATAAACTAGCCTTTATTTGACGAGATTGAGCTAATAAA----------TTT--TTTTT----CTCTAGGTCCCTTATTTCTATTTTTGCACGTGCACGTGCACGGGTTTGAGA-TT-TTTTAACAAAACTCGACGCCACTTTGTCAGGCTCGCCGAGACCTTTNNAATGATACCCAACTTGAAAAAATCGGACCGAAAATGGCCTCTCGGCNCGGGTTCGAGCCCT
Alignments
lowQualScore : 11 4444444444444444444
lowQualScore : 0 0 33 44 44 88888 44 3 3 99 1 7 1 44 7777 1111111111111111111 44 0 6 3 55 2 99 6 0 1 4
lowQualScore : . . .. .. .. ..... .. . . .. . . . .. .... ................... .. . . . .. . .. . . . .
lowQualScore : 5 3 77 99 66 33333 66 3 3 66 0 3 0 66 1111 2222222222222222222 66 4 2 1 66 5 88 5 2 0 2
consensus : TTTCCGGCACGTGCTACAACATGACCTAAGTTCGAGGCCCGCTGGCGACCCCTGGCGGCC--AT-TTT--TT-----T--AA-AA-AT-AATTGTACCAACCTCAAGAGCTACTCACTACCTGTCGAACCCTTTGTTTTTGTTAAAAACGTCACACGAGTGAGCTCAGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCTGGCACGGGTTACCAATTTTTGACCCGAGCTATACGAAAAAGTATAAGTTATTTTTCGAAACGGT--AAAAATAAACTAGCCTTTATTTGACGAGATTGAGCT----AAT----AA------A------TTTTTTTT--CTCTAGGTCCCTTATTTCTATTTTTGCACGTGCACGTGCACGGGTTTGAGA-TT-TTTTAACAAAACTCGACGCCACTTTGTCAGGCTCGCCGAGACCTTTNNAATGATACCCAACTTGAAAAAATCGGACCGAAAATGGCCTCTCGGCNCGGGTTCGAGCCCT
Reference ( family-473 ) : TTTCCGGCACGTGCTACAACATGACCTAAGTTCGAGGCCCGCTGGCGACCCCTGGCGGCC--AT-TTT--TT-----T--AA-AA-AT-AATTGTACCAACCTCAAGAGCTACTCACTACCTGTCGAACCCTTTGTTTTTGTTAAAAACGTCACACGAGTGAGCTCAGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCTGGCACGGGTTACCAATTTTTGACCCGAGCTATACGAAAAAGTATAAGTTATTTTTCGAAACGGT--AAAAATAAACTAGCCTTTATTTGACGAGATTGAGCT----AAT----AA------A------TTTTTTTT--CTCTAGGTCCCTTATTTCTATTTTTGCACGTGCACGTGCACGGGTTTGAGA-TT-TTTTAACAAAACTCGACGCCACTTTGTCAGGCTCGCCGAGACCTTTNNAATGATACCCAACTTGAAAAAATCGGACCGAAAATGGCCTCTCGGCNCGGGTTCGAGCCCT
gi|1 : TTTCCGACACGTGCTACAACATGACCTAAGTTTGAGGCCCGCTGGCGACTCTTTGCGGCC--AC-TTT--TT-----T--AA-AA-ATTAATTGTACCAACCTCAACAGCTACTCACTACCTGTCAAACCCTTTGTTTTTGTTAAAAACGTCACACGAGTGAGCTCAGTAC
gi|1 : TTTTCTAGCACGTGTTACCAATTTT-GACCCGAGCTATACAAAAAAGCATAAGTTATTTTTCGAAACGGT--AAAAATAAACTAGCATTTATTTAACGAGATTGAGCT----AAT----AAAAAC--A------TATTTTTA--CCCTAGGTCTATTATTTCTATTTTTGCACGTGCACAGGCACGGGTTTCAGT-TT-TCTT--TAAAACTTGACACCACTTTATAAAGTTCGCCGAGACCTTTAAAATGATACCAAACTTGAAAAAATCGAACCGAAAATGGCCTCTCGGCACAGTTTCAAGCCCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttctagcacgtgttaccaattttgacccgagctatacaaaaaagcataagttatttttcgaaacggtaaaaataaactagcatttatttaacgagattgagctaataaaaacatatttttaccctaggtctattatttctatttttgcacgtgcacaggcacgggtttcagttttctttaaaacttgacaccactttataaagttcgccgagacctttaaaatgataccaaacttgaaaaaatcgaaccgaaaatggcctctcggcacagtttcaagccct
gi|10 : tttccgacacgtgctacaacatgacctaagtttgaggcccgctggcgactctttgcggccacttttttaaaaattaattgtaccaacctcaacagctactcactacctgtcaaaccctttgtttttgttaaaaacgtcacacgagtgagctcagtacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTCTGGCACGGGTTACCAATTTTTGAGCCGAGCTATACGAAAAAGTATAAGTTATTTTTCGAAACGGT--AAAAATAAACTAGCCTTTATTTGACGAGATTGAGCT----AAT----AT------T------TTCTTTTT--CTCTAGGTCCCTTATTTCTATTTT------TGCACATACACGGGTTTGAGA-TT-TTTTAACAAAACTCGACGTCACTTTGTCAGGCT
gi|11 : TTTCTGGCACGGGTTACTAAATTTTGACCCGAGCTATACGAAAAAGTATAAGTTATTTTTCGAAACGGT--AAAAATAAACTAGCCTTTATTTGACGAGATTGAGCT----AAT-------------------TTTTTTTT--CTCTAGGTCCCTTATTTCTATGCATGCAC
gi|12 : TTTTGCACGTGCACGTGCATTGGTTTCAGA-TT-TTCTA
gi|12 : aaatgtatggtttcataggcttgtgttgcgagGAGACCTTTT-AATGATACACTAGTCGAAAAAAT-GGACTAAAAATGGCCTCTCAACTCTGGTTCGAGCCgagaccttttaatgatacactagtcgaaaaaatggactaaaaatggcctctcaactctggttcgagcct
gi|13 : aaatgtatggtttcataggcttgtgttgcgagttttgcacgtgcacgtgcattggtttcagattttctaCACATACCAGAACATGACCCAGGTTTGAGGCCCGCTGGAGACCCCTAGCGGCC--AG-ATA--TTAGGAAT--AA-AA-A--AATCGCTTTAGCACCAA---CTAATCAATACCTGCCGAAt
gi|14 : ACCAAAGTTCGAGGCCCGCTGGCGAACCCTGGCGGCC--AT-TTT--TT-----CTAAA-AA-AT-AATTATACCAACCTCAAGAGCTACTCAATACCTGTCGACTTCTGTGTCCGGGTTAAAAATGTCATAAGAtggtacttaaattattaaaa
gi|15 : aTGAGA-TT-TTCTATAAAAACTCGACGTCACTTTGTCAGGCTTGCCGATACTTTTCTAATGATACCCAAGTAGAAAAGATCGGACCGAAATTGGCCGCTTTGTTCATGTTCGAGCCa
gi|16 : TGAGCT----AAT----AA------AAAAACATATTTTTA--CTCTAGGTCTATTATTTCTATTTTTGCACGTGCACAGGCACGGGTCTCCGA-CT-TTTT--TAAAACTCGACGCCACTTTATAAGt
gi|17 : TTTTCTAACACGTGTTATCAATTTT-GACACGAGCTATACAAAAAAGCATAAGTTATTTTTTGAAACGGTAAAAAAATTAACTAGCCTTTATATGACGA
gi|18 : TTTCCGGCACGTGCTACAACATAACCTAAGTTCGAGGCCTGCTTGCGACCCCTGGTAGTCATAT-TTT--CT-----T--AA-AA-AA-AAT
gi|19 : TTTCCGGCAGATGCTACAACATGACCTAAGTTCGAGGCCCACTGGCGACCCATAGCGGCC--A---TC--TT-----T--AG-AA-AC-AA
gi|2 : CGACACGTGCTACAAGATGACCTAAGTGTGAGGCCCGCTGGTGACTGTTTGCGGCC--AC-TTT--TT-----A--AA-AAAAT-AATTGTATCAACCTCAAGAGCTACTCACTACCTGTCAAACCCTTTGTTTTTGTTAAAAACGTCACACGAGTGAGCTCAGTACaa
gi|2 : TTTTCTAGCACGTGTTACCAATTTT-GACCCGAGTTATACAAAAA-----AAGTTATTTTTCGAAACGGT--AAAAATAAACTAGCCTTTATTTGACGAGATTGAGCTGTTAAAA----AA------A------TATTTTTA--CCCTAGGTCTATTATTTCTATTTTTGCACGTGCACAGGCACGGGTTTCATATTT-TTTTTTTAAAACTTGACGCAACTTTATATAGTTCGCAGAGACCTTTAAAATGATACCAAACTTGAAAAAATTGAACCAGAAATGGCCTCTCGGCACGGGTTCAAGCCCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttctagcacgtgttaccaattttgacccgagttatacaaaaaaagttatttttcgaaacggtaaaaataaactagcctttatttgacgagattgagctgttaaaaaaatatttttaccctaggtctattatttctatttttgcacgtgcacaggcacgggtttcatattttttttttaaaacttgacgcaactttatatagttcgcagagacctttaaaatgataccaaacttgaaaaaattgaaccagaaatggcctctcggcacgggttcaagccct
gi|20 : cgacacgtgctacaagatgacctaagtgtgaggcccgctggtgactgtttgcggccactttttaaaaaaataattgtatcaacctcaagagctactcactacctgtcaaaccctttgtttttgttaaaaacgtcacacgagtgagctcagtacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTCTGGCACGTGCTACCATTTGACCTAAGTTCGAGGACCGCTGGCGACCCATGGCGGCC--AT-TTT--TT-----T--AA-AA-A
gi|21 : CAACTTGACAAAGGTTCGAGGCCTGCTGGCGACCCCTAGCGGCC--A
gi|22 : gTGACCAAGGTTCGAGGCCTGCTGGCAATCCCTAGCGGCC--Agatatcgaaaataaattagtc
gi|23 : cccaaatACATGATTAAGGTTCAAGGCCCGCTGGCGACCACTAGCGGCC--Aggtatcgggaataaataaag
gi|3 : TTTCCGACACGTGCTACAACATGACGTAAGTTTGAGGCCCGCTGGCGACTCTTTGCGGCC--AT-TTTTTTT-----T--AA-AA-AT-AATTGTACCAACCTCAAGAGCTACTCACTATCTGTCAAACCCTTTGTTTTTGTTAAAAACGTCACgatattggaaataaaaatcgc
gi|3 : TTTTCTAGCACGTGTTACCAATTTT-GACCCGAGCTATACAAAAAAGCATAAGTTATTTTTCGAAACGGT--AAAAATAAACTAGCCTTTATTTGACGAGACTGAGCT----AAT----AAAAATACA------TATTTTTA--CCCTAGGTCTATTATTTCTATCTTTGAACGTGCACAGACACGGGTTTCAGA-TT-TTTT--TAAAACTTGACGCCACTTTATAAAGTTCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttctagcacgtgttaccaattttgacccgagctatacaaaaaagcataagttatttttcgaaacggtaaaaataaactagcctttatttgacgagactgagctaataaaaatacatatttttaccctaggtctattatttctatctttgaacgtgcacagacacgggtttcagatttttttaaaacttgacgccactttataaagttc
gi|4 : tttccgacacgtgctacaacatgacgtaagtttgaggcccgctggcgactctttgcggccatttttttttaaaaataattgtaccaacctcaagagctactcactatctgtcaaaccctttgtttttgttaaaaacgtcacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTCCGGCATGTGCTACAACATAACTTAAGTTCGAGGCCCGCTGGCGACCACTGGTGGTC--ATATTT--TC-----T--AA-AA-AT-A--TATATCAACCTCAAGAGCTGC
gi|4 : TTTTCTGGCACGGGTTACCAATTTTTGA-------------------------TTATTTT-CGAAACGGT--AAAAATAAACTCGCCTTTATTTGACGAGATTGAGCT----A-T-------------------TTTTTTTT--CTCTAGGTCCCTTATTTCTATTTTTGCACATGCACGTTCACGGGTTTGAGA-TT-GTTTAACAAAACTCGACCCCACTTTGTCAGGCTCGCGAAGACCTTTCCAACAATACCCAACCTgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttctggcacgggttaccaatttttgattattttcgaaacggtaaaaataaactcgcctttatttgacgagattgagctatttttttttctctaggtcccttatttctatttttgcacatgcacgttcacgggtttgagattgtttaacaaaactcgaccccactttgtcaggctcgcgaagacctttccaacaatacccaacct
gi|5 : tttccggcatgtgctacaacataacttaagttcgaggcccgctggcgaccactggtggtcatattttctaaaaatatatatcaacctcaagagctgcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTACCGGCACGTGCTACAACATAACCTAAGTTCGAGGCCCGCTGGCGACCCCTGGTGGTC--ATATTT--TC-----T--AA-AA-AA-AAATATACCAATCTCAAGAACTAC
gi|5 : TTTTCTAGCACGG-TTATCAATTTTTGATCCGAGCTATACGAAAAAGTATAAGTTATTTTTCGATACGGT--AAAAATAAACTAGCCTTCATTTGACGAGATTGAGCT----AAT----AT------T------TTTTTTTTTACTCTATGTCCCTTATTTCTATTTTTGCACATGCACGTGCACGGGTATGAGA-TT-TTTTAACAAAACTCGACGCCACTTTGTCaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttctagcacggttatcaatttttgatccgagctatacgaaaaagtataagttatttttcgatacggtaaaaataaactagccttcatttgacgagattgagctaatatttttttttttactctatgtcccttatttctatttttgcacatgcacgtgcacgggtatgagattttttaacaaaactcgacgccactttgtc
gi|6 : ttaccggcacgtgctacaacataacctaagttcgaggcccgctggcgacccctggtggtcatattttctaaaaaaaaatataccaatctcaagaactacaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTCCGGCACGTGCTACAACATAACCTAAGTTCGAGGCCCGCTGGCGACCCCTGGTTGTC--AGATTT--TC-----T--AACAA-AT-A----TACCAACTTCAAGAGCTAC
gi|6 : TTTTCTGTCACGGGTTACCAATTTTTGAACCGTGCTATACGAAAAAGTATAAGTTATTTTTCGAAACGGT--AAAAATAAACTAGCCTTTATTTGACGAGATTGAGCT----AAT--------------------TTTTTTT--CTCTAGGTCCCTTATTTCTATTTTTGCACATGCACGTGCACGGGTTTGAGA-TT-TTTTAACAAAACTCGACGCCACTTTGTCAGGCTgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttctgtcacgggttaccaatttttgaaccgtgctatacgaaaaagtataagttatttttcgaaacggtaaaaataaactagcctttatttgacgagattgagctaattttttttctctaggtcccttatttctatttttgcacatgcacgtgcacgggtttgagattttttaacaaaactcgacgccactttgtcaggct
gi|7 : tttccggcacgtgctacaacataacctaagttcgaggcccgctggcgacccctggttgtcagattttctaacaaatataccaacttcaagagctacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACAACATAAC------TCGAGGCCCGCTGGCGACCCCTGGTGGTC--ATATTT--TC-----T--AA-AG-A--AAATATACTAACCTCAAGAGCTAC
gi|7 : TTTTATGGCACGGGTAACCAATTTTTGATCCGAGCAATACGAAAAAGTAAAAGTTATTTTTCGAAACGGT--AAAAATAAACTCGCCTTTATTTGACCAGATTGAGCT----AAT----CA------A------TTTT-TTT--CTCTAGGTCCCTTATTTCTAGTTTTGCACATGCACGTGCACGGGTTTGAGA-TTATTTTAACAAAACTCGACGCCACTTTGTCAGGCTCgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttatggcacgggtaaccaatttttgatccgagcaatacgaaaaagtaaaagttatttttcgaaacggtaaaaataaactcgcctttatttgaccagattgagctaatcaatttttttctctaggtcccttatttctagttttgcacatgcacgtgcacgggtttgagattattttaacaaaactcgacgccactttgtcaggctc
gi|8 : acaacataactcgaggcccgctggcgacccctggtggtcatattttctaaagaaaatatactaacctcaagagctacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTCTGGCACGGGTTACCAATTTTTGGCCCAAGCTATACGAAAAAGTATAAGTTATTTTTCGAAACGGT--AAATATAAACTAGCCTTTATTTGACGAGATTGAGCT----AAT----AA------A------TTTTTTTT--CTCTAGGTCCCTTATTTCTATTTTTGCCCATGCACGTGCACGGGTTTGAGATTT-TTTTAACAAAACTCGACGCCACTTTGTCAGGCTC
gi|9 : TTTTTAGC-CGAGATACGAAACTTTGACCCGAGCTATAGAAAAAAGTATAAGTTATTTTTTCAAACGGT--AAAAATAAACTAGCCTTTATTTGACGAGATAAAGCG----AATAAAAAA------A------GTTTTTTT--CATTAAGTCCGTGTTTTCTAATTATGCACGTGCACGTGCACGGGTTTGAGA-TT-TTTTAACAAAACTCGACGCCATCTTGTCAGGC