lowQualScore : 1 11111111 222222 222222222222 11111111 2 1 1 1 11 111111 11 22222 1111111 333 111 111 1
lowQualScore : 0 7 5 44444444 777 0 5 8 5 6 777777 4 3 4 4 111111111111 66666666 0 1 4 66 66 6 2 3 2 7 5 7 1 77 2 44 4 4 2 666666 0 88888 4 11 0 0 11111 4 4444444 55 222 4 6 55 444 0 4 3 4 7 3 7 9 000 5 8888 0
lowQualScore : . . . ........ ... . . . . . ...... . . . . ............ ........ . . . .. .. . . . . . . . . .. . .. . . . ...... . ..... . .. . . ..... . ....... .. ... . . .. ... . . . . . . . . ... . .... .
lowQualScore : 1 6 5 00000000 888 1 5 4 0 2 000000 4 9 2 4 888888888888 11111111 1 0 4 11 99 5 0 2 0 0 0 0 7 44 0 66 0 0 7 222222 5 00000 0 55 1 1 77777 4 4444444 55 666 4 9 55 000 9 4 7 0 0 7 0 4 000 7 4444 8
consensus : TAGGTGTAAGCCCACCATTGA-T-T-TT-GTTCTTT---ATTCTATAGTAAATAATAAAAG-TTTGCAGGCTTGTCATTCATAGAGA-GA--CCCAAA-TGAAAGAAGTGAAACTTACA-TTTTAT-----------TGT--------TTGTCAACCTCTGCACTACCAAAA-TATGATGAGAAAAGTAG--GGGTCATGTGTCAT--ATAAGAGATT-TTTTTCTGTTCAGTGTGTACACTGTTGACAAAGTGAAAGTAGACTTCCGAAATCATGTATTCATACCCCGATTTCCAAGCATCATTTTT-TTTT-CTAAATTCACAAT-TCAAACAT-GACAATG---CT-TCAAAATGTTCAAAATACAT-CAATAATGCCATTCAAATAAAAAAA-TGAGCATTAAAATAA--GG-AAAA-------TGCATTTTTAAAGAAGAA--GAAACAA-GGATTATTTATAACCGCC--ATT---ATGCGACT-ACCCC-ACGGAAGCACTTCCTGTTTCCAATGG---TG-GTA--CTATGCCTA
Reference ( gi|1 ) : TAGGTGTAATCCCACTATTGA-T-T-TT-GTTCTTT---ATTCTATAGTAAATAATAAAAG-TTTGAAGGCTTGTCATTCATAGAGG-GT--CCCAAA-TGAAAGAAGTGAAACCTACA-TTTTAC-----------TGT--------TTGTCAACCTCTGCACTATCAAAA-TATGATGAGAAAAGTAG--GGGTCATGTGTCAT--ATAAGAGATTATTTTTCTGCTCTGTGTGTACACTGGTGACAAAGTGAAAGTAGACTTCCGAAATCATGAATTCATACCCCAATTTCCAAGCATCATTTTTCTTTT-CTAAATTCACAAT-TCAAACAT-GACAATG---CTATCAAAATGTTCAAAATACAT-CAATAATGCCATTCAAATAAAAAAA-TGAGCATTAAAAATA--GG-AAAA-------TGCATTTTTAAAGAAGAA--GAATTGA-GGATTATTTACAACCGCC--ATT---ATGCGACT-ACCCC-ACGGAAGTACTTCCTTTTTGCAATGG---TG-GCA--CTATGTCTA
gi|3 : TAGGTG--AGCCCACCATTGA-T-TGTT-GTTCTTT---ATTGTATAGTAAAAAACATTAT-TTTGCAGGCTTGTCATTCATAGAGA-GA--CCCAG--TGAAA-AATTGAAACTTGCA-TTTTAT-----------TGT--------TTGTTAACATCTGCACTACAAAAA-TATAACGATAAAAATAG--GGGTCATGTGCCAT--ATAAGAGATT--TTTTCTGTTCAATGTGCATACTGTTGACAAAGTGAAAGTAGACTTCCGAAATCAGGTATTCATACCCCAATTTCAAACCATCATTT--CTTTTACTAAGTTCACAAT-TCAAACG----------------CAAAATGTTCAAATTACAT-CAATAATGCCATTCAAATAAACAAA-AGAGCATTACAATAA--GG-AACA-------TGCATTTTTACAGAAGAA--GAAACAA-GAATTAACTGTAACCGTC--ATT---AT--------TCTC---------ATTTCTTGTTTCCAATGG---TG-GTA--TTATG-CTA
gi|10 : TAGGTGTAAGCTCACTATTGA-T-T-------CTAT---AATATATA-TATATA-TAGCAG-TTTGCGGGCTTGTTATTCAAAGAGA-AA--TCCAAA-TTAAATAAGTGAAACTTACA-TTTTAT-----------TGT--------TTATCAACCTCTGTACTGTCAAAA-TATGATGAAAAAAGTAG--GGGTCATGTGTCAT--ATAAGAG-TT-TTTATCTGTTCAGTG
gi|4 : AGGTGTAAGCCCACAATTAAAT-T-TT-GTTCTTT---ATCTTATAGTATAAAATAAAAG-TTTGAAGGCTTGTCAATCATAGAGA-GA--CCCAAA-GGAAAGAAGTGCAGCTTATA-TTTTAC-----------TGT--------TTGTTAACTTCTGCACTACCACAG-TATGACGAGAAAAGCAG--GGGCCATATTTCAT--ATAAGATATT-TCTTTCTGTTCAGTGTGTACACTGTTGACAAAGTTAAAGTAGACTTCCGAAGTCATGTATTCATTCCTCAATTTCCAAGCATCA-ATTTATTTT-CTAAATTCGCAAT-TCAAACAT-GGCAATG---CT-TTAGAAT----AAAGAA-----AATGA-GCC-TTAAAATAAGGAAA------------------------A-------TGCGTTTTTAAAGAAAAA--AA--CAA-GGATTCTTTAGAACCGCC--ATT---ATG-------------CGGAAGCATTTCCTGTTTTAAATGG---TG-GTT--CTATc
gi|9 : AGGTGCGAGCCAACCACTGAGT-T-TT-GTTGCTT---ATTCTATAGTAAATAA-AAAGG-ATTGTAGGCTTGTCATTCATAGAGA-GAAACCCAAA-TGAAATAAGTGAAACTTAAAATTTTAT-----------TGT--------TTATCAACCTCTGCATTACCAAAA-TAGGAT-AGAAAAATTG--GGACCATGTGCCAT--CCAAGAG-TTTTTTTTCTGTTCAGTGTATACAacc
gi|21 : AGGTCTAACCCCACCATTGA-TTT-TT-GTTCTTT---ATTCTA
gi|2 : GGTGTAAACCCACCATTGA-T-T-TTTGTTCTTT---ATTCTATAGTAAACAATAAAAA-ATTGAAGGCATGTCATTCATAGAGA-AT--CTCAAA-TGAAAGAAGTGAAACCGACA-TTTTAC-----------TGT--------TTATCAACCTCTGCACTATCAAAG-AATGATGAGAAAAGTAG--GGGTCATGTGTCAT--ATAAGAGATT-TTTTTCTGCTCAGTGTGTACATTGTTGACAAAGTGAAAGTAGACTTCCGACATCATGTATTCATACCTCGATTTCCAAGCATCATTTTT-TTTT-CTAAATTCACAAC-TAAAACAT-GACAATG---CTATCAAAATATTCAAAATTCAT-CAATAATGCCATTTAAATAAAAAAA-TGAGCATTAAAATAA--GG-AAAA-------TGCATTTTTAAAGAAGAA--GAAACGA-GGATTATTTATAACCGCC--ATT---ATGCGACT-ACCCC-ACGGAAGCACTTCCTTTTTCCAATGG---TG-ATA--CTATGC
gi|7 : GTGTAA-CGCACCGTTGA-T-T-TTTGTTCTTT---ATTCTATAGTAAATAATAAAAG-TTTGAAGGCTCGTCATTTAAAGAAGAGA--CTCAAAATGAAAGAAGTGAAACTAACA-TTTTAT-----------TGT--------TTGTTTACCTCTGCACTACCAATT-TATAATGAGAAAAGTAG--GGGTCATGTGTCAT--ATAAGATTTTTTTTTTCTGTTCAGTGAGTACGTTGTTGAAAAAGTGAAAGTATACTTCCGAAATCATGTATTCATACCCCAATTTCCAAGCATCATTTT--TTTT-CTAAATTCACAAT-TCAAACAT-GACAATG-----AT-------TTCAAAATACAT-CAATAATGTCATTCAAAa
gi|6 : CCCACCATTGAAT-T-TT-GTTCTTT---ATGCCTTAGTTAA-AAAAAAAGTTTTGCAGGCTTGTCATTCATAGTGA-AA--CCCAAA-TGAAAGAAGTGGGACTTACA-TTTTAT-----------TGT--------TTGGCAACATTTGCACTACTAAAA-TATGATGAGAAAAGTAG--GGGTCATTTGTCAT--CCAAGATATTAGTTT--TGTTCAGTGTATACACGGTTGACCAAGTGAAAGTAGACTTCCGAAATCATTTATTCATACCCCGATTTCCAAACATCATTTTTTT---------TTCAAAAC-TCGAACAT-GACATTG---CTTTCAAAATGCT-AAAATACAT-CGATAATGTCATTCAActgta
gi|12 : agATTGA-G-T----GTCCTTTTTAATTATATAGGGAATAA-ACATG-TTTACTCGCCT-TCATTCGTAAAAA-CA--CCTTAA-TCCAAGAAGAGCAACTTTTA-TTTTAT-----------TGT--------CTGTTTATATATGTATTGTCAAAAATATCGTTATAAGAGTAGATGGGTtgattatttataaccgcaattatgcgcctactccacggaagcatttcctgtttgcaatgacaat
gi|5 : aGTCATTCATAGAGA-GA--CCCAAA-TGAAACAAGTGAAACTTACA-TTTAACATTTTTCTGTTTGTCTTTTTTTTTGTCAACCTCTGCACTTCCAAAG-TGTGATGAGAAAAGTAT--GG-TCATGTGTCATTTATAAGAGATTATTTT-CTTCTAAATGTTTACACTGTTGACAAAATGAAAGTTGAC----GAAATCATGTATTCATACCATAATTGCCATTCATTATTGTT----T-CTAAATTCACAAT-TCAAACAT-GACAAAG---CTTTCAAAATGTTCTAAATACAT-CAATAACGCCATTCAAATAAAAAAA-TGAGCATTAAAACAA--GG-AAAA-------TGCATTATTAAAGAAGAA--GAAATAA-TGACTATTTATAACCGCC--ATTATCATGCGACT-A---C-ACAAACGCA--TCCTGTTTCCAATGG---TG-GTG--CT
gi|18 : AAGCATCAATTTTTTATT----GATTCACAAT-TCAAACAT-GATATTT---CT-TCAGAAgagc
gi|13 : tattcaattacttaagtgttTTTT-CTAAATTCACAAT-TCAAACAT-GAAATTG---CTTTCAAAATGTTC-AAATGCAT-
gi|19 : ttagTTT-TGAAATTCACAAT-TCAGTCAT-GGCAATG---CT-TCAGAAttttaaaaaagaaaaggacaaggattatttataaccgccattattcgactatcccattgaagcctt
gi|11 : attcccagatataaacttgACAACATCAAACATAGACAGTGTCTCTATTATAAT------AATA------ATAATGCCATTCAAATTAAAAAA--GAGCATTAACATAA--GGTAAAA-------TGCATTTTTAAAGAAGAA--GAAACGA-AGATTATTTATAACTGCC--ATT---ATGCAACT-ATCCC-ACGGAAGCACTTCCTTTTTCCAATGG---TG-GTA--CTATGTCTA
gi|15 : AAAATACAT-CAATAATGAAATTCGAATAAAAAGA-TGAGCATTCAAATAA--GG-AAAA-------TACACTTTTAAATGAAAA--GAA
gi|8 : gcttattcacaatacaaCATACAACAACATCTTTCAAATAACAAAATTGACCA-TAAAAATAAGGG-AAAAAAGGTTTTTTATTTTTAAAATTGAA--ACA---A-GGATCATTTATGGCTACC--ATTATAATGCAACTAACCCC-A-AAAAGCAATTCCTGTTTTTAATGGGTATGTGCATGCTATGacaa
gi|13 : tatgactgaaaaattgttgaaagtgacgcttaacacATTCAAACATGAAAT-TG--CTTTCAAAATG--TT-CAAA-------TGCATTTTTAAAAAAGAAAAGGAC-AA-GGATTATTTATAACCGCC--ATT---ATTCGACT-ATCCC-ATTGAAGaccctttttaaggtataaagagggga
gi|17 : ttagttttctaaattcacaA--GG-AAAA-------TACATTGTTAGATAA-AA--TAATAAA-AGACTATTTATGACTGTC--ATT---ATGCcctt
gi|14 : tttaattcTAAAGAAGTA--AAAC--ACGGCTTACTTATCATCATTTGATT---ATGCAACC-ACCCCCACGGAATCACTTTTTGTTTCCATTGagaaacatattttttgtttt
gi|6 : taaattaaaacgaaGATTATTTATAACCGCA--ATT---ATGCGCCT-ACTCC-ACGGAAGCATTTCCTGTTTGCAATGacctgtgtt
gi|20 : agcccaccattgaattttgttctttatgccttagttaaaaaaaaagttttgcaggcttgtcattcatagtgaaacccaaatgaaagaagtgggacttacattttattgtttggcaacatttgcactactaaaatatgatgagaaaagtaggggtcatttgtcatccaagatattagttttgttcagtgtatacacggttgaccaagtgaaagtagacttccgaaatcatttattcataccccgatttccaaacatcatttttttttcaaaactcgaacatgacattgctttcaaaatgctaaaatacatcgataatgtcattcaatCCC-ACGGAAGCACTTCCTTTTTGCAATGG---TG-GTA--CTATGCacaat
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): GTCGTTTAAATCAAATACCTTCAAGATAAGGAAACGGCAATTTTTAATTAGAAATACCCAAGGATTATTGGTAACTGTCGTTATGCGAGT
Alignments
lowQualScore : 1 11111111111 11111111 11111111 111
lowQualScore : 2 6 8888 777 3 6 4 2 4 55 4 2 4 99999999999 44444444 4 55 66 555 4 1 1 5 4 4 3 3 3 1 999 3 0 4 55 3 0 44 4 88 33333333 3 44 3 555 3 44 111 555 3 1 0
lowQualScore : . . .... ... . . . . . .. . . . ........... ........ . .. .. ... . . . . . . . . . . ... . . . .. . . .. . .. ........ . .. . ... . .. ... ... . . .
lowQualScore : 9 0 6666 000 9 4 4 9 0 55 0 5 0 00000000000 55555555 0 55 11 000 4 4 9 1 0 0 2 6 6 6 666 3 8 8 99 6 4 99 0 66 22222222 6 66 8 666 3 66 777 555 6 2 7
consensus : TAGGTGTAAGCCCACCATTGA-TT-TT-GTTCTTT---ATTCTATAGTAAATAATAAAAG-TTTGNAGGCTTGTCATTCATAGA-GAGA--CCCAAA-TGAAAGAAGTGAAACTT-ACATTTTA-----------TTGT--------TTGTCAACCTCTGCACTACC-AAAATATGATGAGAAAAGTAG--GGGTCATGTGTCAT--ATAAGA-GATT-TTTTTCTGTTCAGTGTGTACACTGTTGACAAAGTGAAAGTAGACTTCCGAAATCATGTATTCATACCCCAATTTCCAAGCATCATTTTT-TT-TTCTAAATTCACAAT-TCAAACAT-GACAATGC-T-T-CAAAATGTTCAAAATACAT-CAATAATGCCATTCAAATAAAAAAAT-GAGCATT-AAAATAAGG--AAAA--------TGCA-TTTTTAA--AGAAGAA--GAA-ACAAGGATTATTTATAACCGCC--ATT---ATGCGACT-ACCCC-ACGGAAGCACTTCCTGTTTCCAATGGTGGTACTATGCCTA
Reference ( family-4672 ) : TAGGTGTAAGCCCACCATTGA-TT-TT-GTTCTTT---ATTCTATAGTAAATAATAAAAG-TTTGCAGGCTTGTCATTCATAGA-GAGA--CCCAAA-TGAAAGAAGTGAAACTT-ACATTTTA-----------TTGT--------TTGTCAACCTCTGCACTACC-AAAATATGATGAGAAAAGTAG--GGGTCATGTGTCAT--ATAAGA-GATT-TTTTTCTGTTCAGTGTGTACACTGTTGACAAAGTGAAAGTAGACTTCCGAAATCATGTATTCATACCCCGATTTCCAAGCATCATTTTT-TT-TTCTAAATTCACAAT-TCAAACAT-GACAATGC-T-T-CAAAATGTTCAAAATACAT-CAATAATGCCATTCAAATAAAAAAAT-GAGCATT-AAAATAAGG--AAAA--------TGCA-TTTTTAA--AGAAGAA--GAA-ACAAGGATTATTTATAACCGCC--ATT---ATGCGACT-ACCCC-ACGGAAGCACTTCCTGTTTCCAATGGTGGTACTATGCCTA
gi|1 : TAGGTGTAATCCCACTATTGA-TT-TT-GTTCTTT---ATTCTATAGTAAATAATAAAAG-TTTGAAGGCTTGTCATTCATAGA-GGGT--CCCAAA-TGAAAGAAGTGAAACCT-ACATTTTA-----------CTGT--------TTGTCAACCTCTGCACTATC-AAAATATGATGAGAAAAGTAG--GGGTCATGTGTCAT--ATAAGA-GATTATTTTTCTGCTCTGTGTGTACACTGGTGACAAAGTGAAAGTAGACTTCCGAAATCATGAATTCATACCCCAATTTCCAAGCATCATTTTTCTT-TTCTAAATTCACAAT-TCAAACAT-GACAATGC-TAT-CAAAATGTTCAAAATACAT-CAATAATGCCATTCAAATAAAAAAAT-GAGCATT-AAAAATAGG--AAAA--------TGCA-TTTTTAA--AGAAGAA--GAA-TTGAGGATTATTTACAACCGCC--ATT---ATGCGACT-ACCCC-ACGGAAGTACTTCCTTTTTGCAATGGTGGCACTATGTCTA
gi|10 : TAGGTGTAAGCTCACTATTGA-TT-------CTAT---AATATATA-TATATA-TAGCAG-TTTGCGGGCTTGTTATTCAAAGA-GAAA--TCCAAA-TTAAATAAGTGAAACTT-ACATTTTA-----------TTGT--------TTATCAACCTCTGTACTGTC-AAAATATGATGAAAAAAGTAG--GGGTCATGTGTCAT--ATAAGA-G-TT-TTTATCTGTTCAGTG
gi|11 : ACAACATCAAACATAGACAGTGT-C-T-C----TATT-ATAATA-AT--AATAATGCCATTCAAATTAAAAAA--GAGCATT-AACATAAGGT-AAAA--------TGCA-TTTTTAA--AGAAGAA--GAA-ACGAAGATTATTTATAACTGCC--ATT---ATGCAACT-ATCCC-ACGGAAGCACTTCCTTTTTCCAATGGTGGTACTATGTCTAc
gi|12 : ATTGA-GT----GTCCTTTTTAATTATATAGGGAATAA-ACATG-TTTACTCGCCT-TCATTCGTAAA-AACA--CCTTAA-TCCAAGAAGAGCAACTT-TTATTTTA-----------TTGT--------CTGTTTATATATGTATTGTCAAAAATATCGTTATAAGAGTAGATGGGT
gi|13 : a-TT-TTCTAAATTCACAAT-TCAAACAT-GAAATTGCTT-T-CAAAATGTTC-AAATGCAT-
gi|13 : ttagATTCAAACATGAAATT-G--CTTTCAAAAT---GTTCAAA--------TGCA-TTTTTAA--AAAAGAA--AAGGACAAGGATTATTTATAACCGCC--ATT---ATTCGACT-ATCCC-ATTGAAGC-CTTttttaaaaaagaaaaggacaaggattatttataaccgccattattcgactatcccattgaagcctt
gi|14 : ttagttttctaaattcacaTAA--AGAAGTA---AA-ACACGGCTTACTTATCATCATTTGATT---ATGCAACC-ACCCCCACGGAATCACTTTTTGTTTCCATTG
gi|15 : taaattaaaacgaa-T-T-CACAATACAAAAAATACAT-CAATAATGAAATTCGAATAAAAAGAT-GAGCATT-CAAATAAGG--AAAA--------TACA-CTTTTAA--ATGAAAA--GAA-ACAAacctgtgtt
gi|16 : gcttaGTCGTTTAAATCAAA---T--ACCTTC-AAGATAAGG--AAAC--------GGCAATTTTTAATTAGAA--A--TAC-CCAAGGATTATTGGTAACTGTC--GTT---ATGCGA
gi|17 : AGG--AAAA--------TACA-TTGTTAG--ATAA-AA--TAA-TAAAAGACTATTTATGACTGTC--ATT---ATGCgt
gi|18 : tttaattcAAGCATCAATTTT-TTATT---GATTCACAAT-TCAAACAT-GATATTTC-T-T-CAGAAagaaacatattttttgtttt
gi|19 : tattcaattacttaagtgttATTCCCAGATATAAACTTG-TT-TTG-AAATTCACAAT-TCAGTCAT-GGCAATGC-T-T-CAGAA
gi|2 : GGTGTAAACCCACCATTGA-TT-TTTGTTCTTT---ATTCTATAGTAAACAATAAAAA-ATTGAAGGCATGTCATTCATAGA-GAAT--CTCAAA-TGAAAGAAGTGAAACCG-ACATTTTA-----------CTGT--------TTATCAACCTCTGCACTATC-AAAGAATGATGAGAAAAGTAG--GGGTCATGTGTCAT--ATAAGA-GATT-TTTTTCTGCTCAGTGTGTACATTGTTGACAAAGTGAAAGTAGACTTCCGACATCATGTATTCATACCTCGATTTCCAAGCATCATTTTT-TT-TTCTAAATTCACAAC-TAAAACAT-GACAATGC-TAT-CAAAATATTCAAAATTCAT-CAATAATGCCATTTAAATAAAAAAAT-GAGCATT-AAAATAAGG--AAAA--------TGCA-TTTTTAA--AGAAGAA--GAA-ACGAGGATTATTTATAACCGCC--ATT---ATGCGACT-ACCCC-ACGGAAGCACTTCCTTTTTCCAATGGTGATACTATGCC
gi|20 : CCC-ACGGAAGCACTTCCTTTTTGCAATGGTGGTACTATGCCa
gi|21 : AGGTCTAACCCCACCATTGATTT-TT-GTTCTTT---ATTCTA
gi|3 : TAGGTG--AGCCCACCATTGA-TTGTT-GTTCTTT---ATTGTATAGTAAAAAACATTAT-TTTGCAGGCTTGTCATTCATAGA-GAGA--CCCAG--TGAAA-AATTGAAACTT-GCATTTTA-----------TTGT--------TTGTTAACATCTGCACTACA-AAAATATAACGATAAAAATAG--GGGTCATGTGCCAT--ATAAGA-GATT-TT-TTCTGTTCAATGTGCATACTGTTGACAAAGTGAAAGTAGACTTCCGAAATCAGGTATTCATACCCCAATTTCAAACCATCATTTCT-TT-TACTAAGTTCACAAT-TCAAACG---------------CAAAATGTTCAAATTACAT-CAATAATGCCATTCAAATAAACAAAA-GAGCATT-ACAATAAGG--AACA--------TGCA-TTTTTAC--AGAAGAA--GAA-ACAAGAATTAACTGTAACCGTC--ATT---ATT---CT--------------CATTTCTTGTTTCCAATGGTGGTATTATGC
gi|4 : AGGTGTAAGCCCACAATTAAATT-TT-GTTCTTT---ATCTTATAGTATAAAATAAAAG-TTTGAAGGCTTGTCAATCATAGA-GAGA--CCCAAA-GGAAAGAAGTGCAGCTT-ATATTTTA-----------CTGT--------TTGTTAACTTCTGCACTACC-ACAGTATGACGAGAAAAGCAG--GGGCCATATTTCAT--ATAAGA-TATT-TCTTTCTGTTCAGTGTGTACACTGTTGACAAAGTTAAAGTAGACTTCCGAAGTCATGTATTCATTCCTCAATTTCCAAGCATCAATTTA-TT-TTCTAAATTCGCAAT-TCAAACAT-GGCAATGC-T-T-TAGAAT-----AAAGA------------------AAATGA---------GCCTT-AAAATAAGG--AAAA--------TGCG-TTTTTAA--AGA--AA--AAA-ACAAGGATTCTTTAGAACCGCC--ATT---ATG-------------CGGAAGCATTTCCTGTTTTAAATGGTGGTTCTATACCta
gi|5 : GTCATTCATAGA-GAGA--CCCAAA-TGAAACAAGTGAAACTT-ACATTTAACATTTTTCTGTTTGTCTTTTTTTTTGTCAACCTCTGCACTTCC-AAAGTGTGATGAGAAAAGTAT--GG-TCATGTGTCATTTATAAGA-GATT-ATTTTCTTCTAAATGTTTACACTGTTGACAAAATGAAAGTTGAC----GAAATCATGTATTCATACCATAATTGCCAT---TCATTATT-GT-TTCTAAATTCACAAT-TCAAACAT-GACAAAGC-T-TTCAAAATGTTCTAAATACAT-CAATAACGCCATTCAAATAAAAAAAT-GAGCATT-AAAACAAGG--AAAA--------TGCA-TTATTAA--AGAAGAA--GAA-ATAATGACTATTTATAACCGCC--ATTATCATGCGACT-A---C-ACAAACGCA--TCCTGTTTCCAATGGTGGTGCT
gi|6 : AGCCCACCATTGAATT-TT-GTTCTTT---ATGCCTTAGTTAA-AAAAAAAGTTTTGCAGGCTTGTCATTCATAGT-GAAA--CCCAAA-TGAAAGAAGTGGGACTT-ACATTTTA-----------TTGT--------TTGGCAACATTTGCACTACT-AAAATATGATGAGAAAAGTAG--GGGTCATTTGTCAT--CCAAGA-TATT-AGTTT-TGTTCAGTGTATACACGGTTGACCAAGTGAAAGTAGACTTCCGAAATCATTTATTCATACCCCGATTTCCAAACATCATTTTT-TT-TTC-AA------AAC-TCGAACAT-GACATTGCTT-T-CAAAATGCT-AAAATACAT-CGATAATGTCATTCAAgagc
gi|6 : CAATGATTATTTATAACCGCA--ATT---ATGCGCCT-ACTCC-ACGGAAGCATTTCCTGTTTGCAATGtgattatttataaccgcaattatgcgcctactccacggaagcatttcctgtttgcaatgacaat
gi|7 : agcccaccattgaattttgttctttatgccttagttaaaaaaaaagttttgcaggcttgtcattcatagtgaaacccaaatgaaagaagtgggacttacattttattgtttggcaacatttgcactactaaaatatgatgagaaaagtaggggtcatttgtcatccaagatattagttttgttcagtgtatacacggttgaccaagtgaaagtagacttccgaaatcatttattcataccccgatttccaaacatcatttttttttcaaaactcgaacatgacattgctttcaaaatgctaaaatacatcgataatgtcattGTGTAA-CGCACCGTTGA-TT-TTTGTTCTTT---ATTCTATAGTAAATAATAAAAG-TTTGAAGGCTCGTCATTTAAAGAAGAGA--CTCAAAATGAAAGAAGTGAAACTA-ACATTTTA-----------TTGT--------TTGTTTACCTCTGCACTACC-AATTTATAATGAGAAAAGTAG--GGGTCATGTGTCAT--ATAAGATTTTT-TTTTTCTGTTCAGTGAGTACGTTGTTGAAAAAGTGAAAGTATACTTCCGAAATCATGTATTCATACCCCAATTTCCAAGCATCA-TTTT-TT-TTCTAAATTCACAAT-TCAAACAT-GACAATG----------AT-TTCAAAATACAT-CAATAATGTCATTCAAAacaat
gi|8 : CATACAACAACATCTTTCAAATAACAAAATTGACCATA-AAAATAAGG--GAAAAAAGGTTTTTTA-TTTTTAA--A-----ATTGAA-ACAAGGATCATTTATGGCTACC--ATTATAATGCAACTAACCCC-A-AAAAGCAATTCCTGTTTTTAATG--GGTA-TGTGCctgta
gi|9 : tatgactgaaaaattgttgaaagtgacgcttaacacAGGTGCGAGCCAACCACTGAGTT-TT-GTTGCTT---ATTCTATAGTAAATAA-AAAGG-ATTGTAGGCTTGTCATTCATAGA-GAGAAACCCAAA-TGAAATAAGTGAAACTTAAAATTTTA-----------TTGT--------TTATCAACCTCTGCATTACC-AAAATAGGAT-AGAAAAATTG--GGACCATGTGCCAT--CCAAGA-GTTT-TTTTTCTGTTCAGTGTATACAatgctatgaccctttttaaggtataaagagggga
Alignments
lowQualScore : 1 11111111111 11111111 11111111 111
lowQualScore : 2 6 8888 777 3 6 4 1 4 55 4 2 4 99999999999 44444444 4 55 66 2 4 4 66 1 5 4 4 3 3 3 1 999 3 0 4 55 3 0 44 4 88 33333333 3 44 3 555 3 44 111 555 3 1 0
lowQualScore : . . .... ... . . . . . .. . . . ........... ........ . .. .. . . . .. . . . . . . . . ... . . . .. . . .. . .. ........ . .. . ... . .. ... ... . . .
lowQualScore : 9 0 6666 000 9 4 4 0 0 55 0 5 0 00000000000 55555555 0 55 11 2 4 4 99 9 1 0 0 2 6 6 6 666 3 8 8 99 6 4 99 0 66 22222222 6 66 8 666 3 66 777 555 6 2 7
consensus : TAGGTGTAAGCCCACCATTGA-TT-TT-GTTCTTT---ATTCTATAGTAAATAATAAAAG-TTTGNAGGCTTGTCATTCATAGA-GAGA--CCCAAA-TGAAAGAAGTGAAACTT-ACATTTTA-----------TTGT--------TTGTCAACCTCTGCACTACC-AAAATATGATGAGAAAAGTAG--GGGTCATGTGTCAT--ATAAGAGATT-TT-TTTCTGTTCAGTGTGTACACTGTTGACAAAGTGAAAGTAGACTTCCGAAATCATGTATTCA--TACCCCAATTTCCAAGCATCATTTTT-TT-TTCTAAATTCACAAT-TCAAACAT-GACAATGC-T-T-CAAAATGTTCAAAATACAT-CAATAATGCCATTCAAATAAAAAAAT-GAGCATT-AAAATAAGG--AAAA--------TGCA-TTTTTAA--AGAAGAA--GAA-ACAAGGATTATTTATAACCGCC--ATT---ATGCGACT-ACCCC-ACGGAAGCACTTCCTGTTTCCAATGGTGGTACTATGCCTA
Reference ( family-4672 ) : TAGGTGTAAGCCCACCATTGA-TT-TT-GTTCTTT---ATTCTATAGTAAATAATAAAAG-TTTGNAGGCTTGTCATTCATAGA-GAGA--CCCAAA-TGAAAGAAGTGAAACTT-ACATTTTA-----------TTGT--------TTGTCAACCTCTGCACTACC-AAAATATGATGAGAAAAGTAG--GGGTCATGTGTCAT--ATAAGAGATT-TT-TTTCTGTTCAGTGTGTACACTGTTGACAAAGTGAAAGTAGACTTCCGAAATCATGTATTCA--TACCCCAATTTCCAAGCATCATTTTT-TT-TTCTAAATTCACAAT-TCAAACAT-GACAATGC-T-T-CAAAATGTTCAAAATACAT-CAATAATGCCATTCAAATAAAAAAAT-GAGCATT-AAAATAAGG--AAAA--------TGCA-TTTTTAA--AGAAGAA--GAA-ACAAGGATTATTTATAACCGCC--ATT---ATGCGACT-ACCCC-ACGGAAGCACTTCCTGTTTCCAATGGTGGTACTATGCCTA
gi|1 : TAGGTGTAATCCCACTATTGA-TT-TT-GTTCTTT---ATTCTATAGTAAATAATAAAAG-TTTGAAGGCTTGTCATTCATAGA-GGGT--CCCAAA-TGAAAGAAGTGAAACCT-ACATTTTA-----------CTGT--------TTGTCAACCTCTGCACTATC-AAAATATGATGAGAAAAGTAG--GGGTCATGTGTCAT--ATAAGAGATTATT-TTTCTGCTCTGTGTGTACACTGGTGACAAAGTGAAAGTAGACTTCCGAAATCATGAATTCA--TACCCCAATTTCCAAGCATCATTTTTCTT-TTCTAAATTCACAAT-TCAAACAT-GACAATGC-TAT-CAAAATGTTCAAAATACAT-CAATAATGCCATTCAAATAAAAAAAT-GAGCATT-AAAAATAGG--AAAA--------TGCA-TTTTTAA--AGAAGAA--GAA-TTGAGGATTATTTACAACCGCC--ATT---ATGCGACT-ACCCC-ACGGAAGTACTTCCTTTTTGCAATGGTGGCACTATGTCTA
gi|10 : TAGGTGTAAGCTCACTATTGA-TT-------CTAT---AATATATA-TATATA-TAGCAG-TTTGCGGGCTTGTTATTCAAAGA-GAAA--TCCAAA-TTAAATAAGTGAAACTT-ACATTTTA-----------TTGT--------TTATCAACCTCTGTACTGTC-AAAATATGATGAAAAAAGTAG--GGGTCATGTGTCAT--ATAAGAG-TT-TT-TATCTGTTCAGTG
gi|11 : ACAACATCAAACATAGACAGTGT-C-T-C----TATT-ATAATA-AT--AATAATGCCATTCAAATTAAAAAA--GAGCATT-AACATAAGGT-AAAA--------TGCA-TTTTTAA--AGAAGAA--GAA-ACGAAGATTATTTATAACTGCC--ATT---ATGCAACT-ATCCC-ACGGAAGCACTTCCTTTTTCCAATGGTGGTACTATGTCTAc
gi|12 : ATTGA-GT----GTCCTTTTTAATTATATAGGGAATAA-ACATG-TTTACTCGCCT-TCATTCGTAAA-AACA--CCTTAA-TCCAAGAAGAGCAACTT-TTATTTTA-----------TTGT--------CTGTTTATATATGTATTGTCAAAAATATCGTTATAAGAGTAGATGGGT
gi|13 : a-TT-TTCTAAATTCACAAT-TCAAACAT-GAAATTGCTT-T-CAAAATGTTC-AAATGCAT-
gi|13 : ttagATTCAAACATGAAATT-G--CTTTCAAAAT---GTTCAAA--------TGCA-TTTTTAA--AAAAGAA--AAGGACAAGGATTATTTATAACCGCC--ATT---ATTCGACT-ATCCC-ATTGAAGC-CTTttttaaaaaagaaaaggacaaggattatttataaccgccattattcgactatcccattgaagcctt
gi|14 : ttagttttctaaattcacaTAA--AGAAGTA---AA-ACACGGCTTACTTATCATCATTTGATT---ATGCAACC-ACCCCCACGGAATCACTTTTTGTTTCCATTG
gi|15 : taaattaaaacgaa-T-T-CACAATACAAAAAATACAT-CAATAATGAAATTCGAATAAAAAGAT-GAGCATT-CAAATAAGG--AAAA--------TACA-CTTTTAA--ATGAAAA--GAA-ACAAacctgtgtt
gi|16 : gcttaGTCGTTTAAATCAAA---T--ACCTTC-AAGATAAGG--AAAC--------GGCAATTTTTAATTAGAA--A--TAC-CCAAGGATTATTGGTAACTGTC--GTT---ATGCGA
gi|17 : AGG--AAAA--------TACA-TTGTTAG--ATAA-AA--TAA-TAAAAGACTATTTATGACTGTC--ATT---ATGCgt
gi|18 : tttaattcTATTCAATTACTTAAGTGTT-AAGCATCAATTTT-TTATT---GATTCACAAT-TCAAACAT-GATATTTC-T-T-CAGAAagaaacatattttttgtttt
gi|19 : ATTCCCAGATATAAACTTG-TT-TTG-AAATTCACAAT-TCAGTCAT-GGCAATGC-T-T-CAGAA
gi|2 : GGTGTAAACCCACCATTGA-TT-TTTGTTCTTT---ATTCTATAGTAAACAATAAAAA-ATTGAAGGCATGTCATTCATAGA-GAAT--CTCAAA-TGAAAGAAGTGAAACCG-ACATTTTA-----------CTGT--------TTATCAACCTCTGCACTATC-AAAGAATGATGAGAAAAGTAG--GGGTCATGTGTCAT--ATAAGAGATT-TT-TTTCTGCTCAGTGTGTACATTGTTGACAAAGTGAAAGTAGACTTCCGACATCATGTATTCA--TACCTCGATTTCCAAGCATCATTTTT-TT-TTCTAAATTCACAAC-TAAAACAT-GACAATGC-TAT-CAAAATATTCAAAATTCAT-CAATAATGCCATTTAAATAAAAAAAT-GAGCATT-AAAATAAGG--AAAA--------TGCA-TTTTTAA--AGAAGAA--GAA-ACGAGGATTATTTATAACCGCC--ATT---ATGCGACT-ACCCC-ACGGAAGCACTTCCTTTTTCCAATGGTGATACTATGCC
gi|20 : CCC-ACGGAAGCACTTCCTTTTTGCAATGGTGGTACTATGCCa
gi|21 : AGGTCTAACCCCACCATTGATTT-TT-GTTCTTT---ATTCTA
gi|3 : TAGGTG--AGCCCACCATTGA-TTGTT-GTTCTTT---ATTGTATAGTAAAAAACATTAT-TTTGCAGGCTTGTCATTCATAGA-GAGA--CCCAG--TGAAA-AATTGAAACTT-GCATTTTA-----------TTGT--------TTGTTAACATCTGCACTACA-AAAATATAACGATAAAAATAG--GGGTCATGTGCCAT--ATAAGAGATT-TT--TTCTGTTCAATGTGCATACTGTTGACAAAGTGAAAGTAGACTTCCGAAATCAGGTATTCA--TACCCCAATTTCAAACCATCATTTCT-TT-TACTAAGTTCACAAT-TCAAACG---------------CAAAATGTTCAAATTACAT-CAATAATGCCATTCAAATAAACAAAA-GAGCATT-ACAATAAGG--AACA--------TGCA-TTTTTAC--AGAAGAA--GAA-ACAAGAATTAACTGTAACCGTC--ATT---ATT---CT--------------CATTTCTTGTTTCCAATGGTGGTATTATGC
gi|4 : AGGTGTAAGCCCACAATTAAATT-TT-GTTCTTT---ATCTTATAGTATAAAATAAAAG-TTTGAAGGCTTGTCAATCATAGA-GAGA--CCCAAA-GGAAAGAAGTGCAGCTT-ATATTTTA-----------CTGT--------TTGTTAACTTCTGCACTACC-ACAGTATGACGAGAAAAGCAG--GGGCCATATTTCAT--ATAAGATATT-TC-TTTCTGTTCAGTGTGTACACTGTTGACAAAGTTAAAGTAGACTTCCGAAGTCATGTATTCA--TTCCTCAATTTCCAAGCATCAATTTA-TT-TTCTAAATTCGCAAT-TCAAACAT-GGCAATGC-T-T-TAGAAT-----AAAGA------------------AAATGA---------GCCTT-AAAATAAGG--AAAA--------TGCG-TTTTTAA--AGA--AA--AAA-ACAAGGATTCTTTAGAACCGCC--ATT---ATG-------------CGGAAGCATTTCCTGTTTTAAATGGTGGTTCTATACCta
gi|5 : GTCATTCATAGA-GAGA--CCCAAA-TGAAACAAGTGAAACTT-ACATTTAACATTTTTCTGTTTGTCTTTTTTTTTGTCAACCTCTGCACTTCC-AAAGTGTGATGAGAAAAGTAT--GG-TCATGTGTCATTTATAAGAGATT-AT-TTTCTTCTAAATGTTTACACTGTTGACAAAATGAAAGTTGAC----GAAATCATGTATTCA--TACCATAATTGCCAT---TCATTATT-GT-TTCTAAATTCACAAT-TCAAACAT-GACAAAGC-T-TTCAAAATGTTCTAAATACAT-CAATAACGCCATTCAAATAAAAAAAT-GAGCATT-AAAACAAGG--AAAA--------TGCA-TTATTAA--AGAAGAA--GAA-ATAATGACTATTTATAACCGCC--ATTATCATGCGACT-A---C-ACAAACGCA--TCCTGTTTCCAATGGTGGTGCT
gi|6 : AGCCCACCATTGAATT-TT-GTTCTTT---ATGCCTTAGTTAA-AAAAAAAGTTTTGCAGGCTTGTCATTCATAGT-GAAA--CCCAAA-TGAAAGAAGTGGGACTT-ACATTTTA-----------TTGT--------TTGGCAACATTTGCACTACT-AAAATATGATGAGAAAAGTAG--GGGTCATTTGTCAT--CCAAGATATT-AG-TTT-TGTTCAGTGTATACACGGTTGACCAAGTGAAAGTAGACTTCCGAAATCATTTATTCA--TACCCCGATTTCCAAACATCATTTTT-TT-TTC-AA------AAC-TCGAACAT-GACATTGCTT-T-CAAAATGCT-AAAATACAT-CGATAATGTCATTCAAgagc
gi|6 : CAATGATTATTTATAACCGCA--ATT---ATGCGCCT-ACTCC-ACGGAAGCATTTCCTGTTTGCAATGtgattatttataaccgcaattatgcgcctactccacggaagcatttcctgtttgcaatgacaat
gi|7 : agcccaccattgaattttgttctttatgccttagttaaaaaaaaagttttgcaggcttgtcattcatagtgaaacccaaatgaaagaagtgggacttacattttattgtttggcaacatttgcactactaaaatatgatgagaaaagtaggggtcatttgtcatccaagatattagttttgttcagtgtatacacggttgaccaagtgaaagtagacttccgaaatcatttattcataccccgatttccaaacatcatttttttttcaaaactcgaacatgacattgctttcaaaatgctaaaatacatcgataatgtcattGTGTAA-CGCACCGTTGA-TT-TTTGTTCTTT---ATTCTATAGTAAATAATAAAAG-TTTGAAGGCTCGTCATTTAAAGAAGAGA--CTCAAAATGAAAGAAGTGAAACTA-ACATTTTA-----------TTGT--------TTGTTTACCTCTGCACTACC-AATTTATAATGAGAAAAGTAG--GGGTCATGTGTCAT--ATAAGATTTT-TTTTTTCTGTTCAGTGAGTACGTTGTTGAAAAAGTGAAAGTATACTTCCGAAATCATGTATTCA--TACCCCAATTTCCAAGCATCA-TTTT-TT-TTCTAAATTCACAAT-TCAAACAT-GACAATG----------AT-TTCAAAATACAT-CAATAATGTCATTCAAAacaat
gi|8 : CATACAACAACATCTTTCAAATAACAAAATTGACCATA-AAAATAAGG--GAAAAAAGGTTTTTTA-TTTTTAA--A-----ATTGAA-ACAAGGATCATTTATGGCTACC--ATTATAATGCAACTAACCCC-A-AAAAGCAATTCCTGTTTTTAATG--GGTA-TGTGCctgta
gi|9 : tatgactgaaaaattgttgaaagtgacgcttaacacAGGTGCGAGCCAACCACTGAGTT-TT-GTTGCTT---ATTCTATAGTAAATAA-AAAGG-ATTGTAGGCTTGTCATTCATAGA-GAGAAACCCAAA-TGAAATAAGTGAAACTTAAAATTTTA-----------TTGT--------TTATCAACCTCTGCATTACC-AAAATAGGAT-AGAAAAATTG--GGACCATGTGCCAT--CCAAGAGTTT-TT-TTTCTGTTCAGTGTATACAatgctatgaccctttttaaggtataaagagggga
Alignments
lowQualScore : 1 11111111111 11111111 11111111 111
lowQualScore : 2 6 8888 777 3 6 4 1 4 55 4 2 4 99999999999 44444444 4 55 66 2 4 4 66 1 5 4 4 3 3 3 1 999 3 0 4 55 3 0 44 4 88 33333333 3 44 3 555 3 44 111 555 3 1 0
lowQualScore : . . .... ... . . . . . .. . . . ........... ........ . .. .. . . . .. . . . . . . . . ... . . . .. . . .. . .. ........ . .. . ... . .. ... ... . . .
lowQualScore : 9 0 6666 000 9 4 4 0 0 55 0 5 0 00000000000 55555555 0 55 11 2 4 4 99 9 1 0 0 2 6 6 6 666 3 8 8 99 6 4 99 0 66 22222222 6 66 8 666 3 66 777 555 6 2 7
consensus : TAGGTGTAAGCCCACCATTGA-TT-TT-GTTCTTT---ATTCTATAGTAAATAATAAAAG-TTTGNAGGCTTGTCATTCATAGA-GAGA--CCCAAA-TGAAAGAAGTGAAACTT-ACATTTTA-----------TTGT--------TTGTCAACCTCTGCACTACC-AAAATATGATGAGAAAAGTAG--GGGTCATGTGTCAT--ATAAGAGATT-TT-TTTCTGTTCAGTGTGTACACTGTTGACAAAGTGAAAGTAGACTTCCGAAATCATGTATTCA--TACCCCAATTTCCAAGCATCATTTTT-TT-TTCTAAATTCACAAT-TCAAACAT-GACAATGC-T-T-CAAAATGTTCAAAATACAT-CAATAATGCCATTCAAATAAAAAAAT-GAGCATT-AAAATAAGG--AAAA--------TGCA-TTTTTAA--AGAAGAA--GAA-ACAAGGATTATTTATAACCGCC--ATT---ATGCGACT-ACCCC-ACGGAAGCACTTCCTGTTTCCAATGGTGGTACTATGCCTA
Reference ( family-4672 ) : TAGGTGTAAGCCCACCATTGA-TT-TT-GTTCTTT---ATTCTATAGTAAATAATAAAAG-TTTGNAGGCTTGTCATTCATAGA-GAGA--CCCAAA-TGAAAGAAGTGAAACTT-ACATTTTA-----------TTGT--------TTGTCAACCTCTGCACTACC-AAAATATGATGAGAAAAGTAG--GGGTCATGTGTCAT--ATAAGAGATT-TT-TTTCTGTTCAGTGTGTACACTGTTGACAAAGTGAAAGTAGACTTCCGAAATCATGTATTCA--TACCCCAATTTCCAAGCATCATTTTT-TT-TTCTAAATTCACAAT-TCAAACAT-GACAATGC-T-T-CAAAATGTTCAAAATACAT-CAATAATGCCATTCAAATAAAAAAAT-GAGCATT-AAAATAAGG--AAAA--------TGCA-TTTTTAA--AGAAGAA--GAA-ACAAGGATTATTTATAACCGCC--ATT---ATGCGACT-ACCCC-ACGGAAGCACTTCCTGTTTCCAATGGTGGTACTATGCCTA
gi|1 : TAGGTGTAATCCCACTATTGA-TT-TT-GTTCTTT---ATTCTATAGTAAATAATAAAAG-TTTGAAGGCTTGTCATTCATAGA-GGGT--CCCAAA-TGAAAGAAGTGAAACCT-ACATTTTA-----------CTGT--------TTGTCAACCTCTGCACTATC-AAAATATGATGAGAAAAGTAG--GGGTCATGTGTCAT--ATAAGAGATTATT-TTTCTGCTCTGTGTGTACACTGGTGACAAAGTGAAAGTAGACTTCCGAAATCATGAATTCA--TACCCCAATTTCCAAGCATCATTTTTCTT-TTCTAAATTCACAAT-TCAAACAT-GACAATGC-TAT-CAAAATGTTCAAAATACAT-CAATAATGCCATTCAAATAAAAAAAT-GAGCATT-AAAAATAGG--AAAA--------TGCA-TTTTTAA--AGAAGAA--GAA-TTGAGGATTATTTACAACCGCC--ATT---ATGCGACT-ACCCC-ACGGAAGTACTTCCTTTTTGCAATGGTGGCACTATGTCTA
gi|10 : TAGGTGTAAGCTCACTATTGA-TT-------CTAT---AATATATA-TATATA-TAGCAG-TTTGCGGGCTTGTTATTCAAAGA-GAAA--TCCAAA-TTAAATAAGTGAAACTT-ACATTTTA-----------TTGT--------TTATCAACCTCTGTACTGTC-AAAATATGATGAAAAAAGTAG--GGGTCATGTGTCAT--ATAAGAG-TT-TT-TATCTGTTCAGTG
gi|11 : ACAACATCAAACATAGACAGTGT-C-T-C----TATT-ATAATA-AT--AATAATGCCATTCAAATTAAAAAA--GAGCATT-AACATAAGGT-AAAA--------TGCA-TTTTTAA--AGAAGAA--GAA-ACGAAGATTATTTATAACTGCC--ATT---ATGCAACT-ATCCC-ACGGAAGCACTTCCTTTTTCCAATGGTGGTACTATGTCTAc
gi|12 : ATTGA-GT----GTCCTTTTTAATTATATAGGGAATAA-ACATG-TTTACTCGCCT-TCATTCGTAAA-AACA--CCTTAA-TCCAAGAAGAGCAACTT-TTATTTTA-----------TTGT--------CTGTTTATATATGTATTGTCAAAAATATCGTTATAAGAGTAGATGGGT
gi|13 : a-TT-TTCTAAATTCACAAT-TCAAACAT-GAAATTGCTT-T-CAAAATGTTC-AAATGCAT-
gi|13 : ttagATTCAAACATGAAATT-G--CTTTCAAAAT---GTTCAAA--------TGCA-TTTTTAA--AAAAGAA--AAGGACAAGGATTATTTATAACCGCC--ATT---ATTCGACT-ATCCC-ATTGAAGC-CTTttttaaaaaagaaaaggacaaggattatttataaccgccattattcgactatcccattgaagcctt
gi|14 : ttagttttctaaattcacaTAA--AGAAGTA---AA-ACACGGCTTACTTATCATCATTTGATT---ATGCAACC-ACCCCCACGGAATCACTTTTTGTTTCCATTG
gi|15 : taaattaaaacgaa-T-T-CACAATACAAAAAATACAT-CAATAATGAAATTCGAATAAAAAGAT-GAGCATT-CAAATAAGG--AAAA--------TACA-CTTTTAA--ATGAAAA--GAA-ACAAacctgtgtt
gi|16 : gcttaGTCGTTTAAATCAAA---T--ACCTTC-AAGATAAGG--AAAC--------GGCAATTTTTAATTAGAA--A--TAC-CCAAGGATTATTGGTAACTGTC--GTT---ATGCGA
gi|17 : AGG--AAAA--------TACA-TTGTTAG--ATAA-AA--TAA-TAAAAGACTATTTATGACTGTC--ATT---ATGCgt
gi|18 : tttaattcTATTCAATTACTTAAGTGTT-AAGCATCAATTTT-TTATT---GATTCACAAT-TCAAACAT-GATATTTC-T-T-CAGAAagaaacatattttttgtttt
gi|19 : ATTCCCAGATATAAACTTG-TT-TTG-AAATTCACAAT-TCAGTCAT-GGCAATGC-T-T-CAGAA
gi|2 : GGTGTAAACCCACCATTGA-TT-TTTGTTCTTT---ATTCTATAGTAAACAATAAAAA-ATTGAAGGCATGTCATTCATAGA-GAAT--CTCAAA-TGAAAGAAGTGAAACCG-ACATTTTA-----------CTGT--------TTATCAACCTCTGCACTATC-AAAGAATGATGAGAAAAGTAG--GGGTCATGTGTCAT--ATAAGAGATT-TT-TTTCTGCTCAGTGTGTACATTGTTGACAAAGTGAAAGTAGACTTCCGACATCATGTATTCA--TACCTCGATTTCCAAGCATCATTTTT-TT-TTCTAAATTCACAAC-TAAAACAT-GACAATGC-TAT-CAAAATATTCAAAATTCAT-CAATAATGCCATTTAAATAAAAAAAT-GAGCATT-AAAATAAGG--AAAA--------TGCA-TTTTTAA--AGAAGAA--GAA-ACGAGGATTATTTATAACCGCC--ATT---ATGCGACT-ACCCC-ACGGAAGCACTTCCTTTTTCCAATGGTGATACTATGCC
gi|20 : CCC-ACGGAAGCACTTCCTTTTTGCAATGGTGGTACTATGCCa
gi|21 : AGGTCTAACCCCACCATTGATTT-TT-GTTCTTT---ATTCTA
gi|3 : TAGGTG--AGCCCACCATTGA-TTGTT-GTTCTTT---ATTGTATAGTAAAAAACATTAT-TTTGCAGGCTTGTCATTCATAGA-GAGA--CCCAG--TGAAA-AATTGAAACTT-GCATTTTA-----------TTGT--------TTGTTAACATCTGCACTACA-AAAATATAACGATAAAAATAG--GGGTCATGTGCCAT--ATAAGAGATT-TT--TTCTGTTCAATGTGCATACTGTTGACAAAGTGAAAGTAGACTTCCGAAATCAGGTATTCA--TACCCCAATTTCAAACCATCATTTCT-TT-TACTAAGTTCACAAT-TCAAACG---------------CAAAATGTTCAAATTACAT-CAATAATGCCATTCAAATAAACAAAA-GAGCATT-ACAATAAGG--AACA--------TGCA-TTTTTAC--AGAAGAA--GAA-ACAAGAATTAACTGTAACCGTC--ATT---ATT---CT--------------CATTTCTTGTTTCCAATGGTGGTATTATGC
gi|4 : AGGTGTAAGCCCACAATTAAATT-TT-GTTCTTT---ATCTTATAGTATAAAATAAAAG-TTTGAAGGCTTGTCAATCATAGA-GAGA--CCCAAA-GGAAAGAAGTGCAGCTT-ATATTTTA-----------CTGT--------TTGTTAACTTCTGCACTACC-ACAGTATGACGAGAAAAGCAG--GGGCCATATTTCAT--ATAAGATATT-TC-TTTCTGTTCAGTGTGTACACTGTTGACAAAGTTAAAGTAGACTTCCGAAGTCATGTATTCA--TTCCTCAATTTCCAAGCATCAATTTA-TT-TTCTAAATTCGCAAT-TCAAACAT-GGCAATGC-T-T-TAGAAT-----AAAGA------------------AAATGA---------GCCTT-AAAATAAGG--AAAA--------TGCG-TTTTTAA--AGA--AA--AAA-ACAAGGATTCTTTAGAACCGCC--ATT---ATG-------------CGGAAGCATTTCCTGTTTTAAATGGTGGTTCTATACCta
gi|5 : GTCATTCATAGA-GAGA--CCCAAA-TGAAACAAGTGAAACTT-ACATTTAACATTTTTCTGTTTGTCTTTTTTTTTGTCAACCTCTGCACTTCC-AAAGTGTGATGAGAAAAGTAT--GG-TCATGTGTCATTTATAAGAGATT-AT-TTTCTTCTAAATGTTTACACTGTTGACAAAATGAAAGTTGAC----GAAATCATGTATTCA--TACCATAATTGCCAT---TCATTATT-GT-TTCTAAATTCACAAT-TCAAACAT-GACAAAGC-T-TTCAAAATGTTCTAAATACAT-CAATAACGCCATTCAAATAAAAAAAT-GAGCATT-AAAACAAGG--AAAA--------TGCA-TTATTAA--AGAAGAA--GAA-ATAATGACTATTTATAACCGCC--ATTATCATGCGACT-A---C-ACAAACGCA--TCCTGTTTCCAATGGTGGTGCT
gi|6 : AGCCCACCATTGAATT-TT-GTTCTTT---ATGCCTTAGTTAA-AAAAAAAGTTTTGCAGGCTTGTCATTCATAGT-GAAA--CCCAAA-TGAAAGAAGTGGGACTT-ACATTTTA-----------TTGT--------TTGGCAACATTTGCACTACT-AAAATATGATGAGAAAAGTAG--GGGTCATTTGTCAT--CCAAGATATT-AG-TTT-TGTTCAGTGTATACACGGTTGACCAAGTGAAAGTAGACTTCCGAAATCATTTATTCA--TACCCCGATTTCCAAACATCATTTTT-TT-TTC-AA------AAC-TCGAACAT-GACATTGCTT-T-CAAAATGCT-AAAATACAT-CGATAATGTCATTCAAgagc
gi|6 : CAATGATTATTTATAACCGCA--ATT---ATGCGCCT-ACTCC-ACGGAAGCATTTCCTGTTTGCAATGtgattatttataaccgcaattatgcgcctactccacggaagcatttcctgtttgcaatgacaat
gi|7 : agcccaccattgaattttgttctttatgccttagttaaaaaaaaagttttgcaggcttgtcattcatagtgaaacccaaatgaaagaagtgggacttacattttattgtttggcaacatttgcactactaaaatatgatgagaaaagtaggggtcatttgtcatccaagatattagttttgttcagtgtatacacggttgaccaagtgaaagtagacttccgaaatcatttattcataccccgatttccaaacatcatttttttttcaaaactcgaacatgacattgctttcaaaatgctaaaatacatcgataatgtcattGTGTAA-CGCACCGTTGA-TT-TTTGTTCTTT---ATTCTATAGTAAATAATAAAAG-TTTGAAGGCTCGTCATTTAAAGAAGAGA--CTCAAAATGAAAGAAGTGAAACTA-ACATTTTA-----------TTGT--------TTGTTTACCTCTGCACTACC-AATTTATAATGAGAAAAGTAG--GGGTCATGTGTCAT--ATAAGATTTT-TTTTTTCTGTTCAGTGAGTACGTTGTTGAAAAAGTGAAAGTATACTTCCGAAATCATGTATTCA--TACCCCAATTTCCAAGCATCA-TTTT-TT-TTCTAAATTCACAAT-TCAAACAT-GACAATG----------AT-TTCAAAATACAT-CAATAATGTCATTCAAAacaat
gi|8 : CATACAACAACATCTTTCAAATAACAAAATTGACCATA-AAAATAAGG--GAAAAAAGGTTTTTTA-TTTTTAA--A-----ATTGAA-ACAAGGATCATTTATGGCTACC--ATTATAATGCAACTAACCCC-A-AAAAGCAATTCCTGTTTTTAATG--GGTA-TGTGCctgta
gi|9 : tatgactgaaaaattgttgaaagtgacgcttaacacAGGTGCGAGCCAACCACTGAGTT-TT-GTTGCTT---ATTCTATAGTAAATAA-AAAGG-ATTGTAGGCTTGTCATTCATAGA-GAGAAACCCAAA-TGAAATAAGTGAAACTTAAAATTTTA-----------TTGT--------TTATCAACCTCTGCATTACC-AAAATAGGAT-AGAAAAATTG--GGACCATGTGCCAT--CCAAGAGTTT-TT-TTTCTGTTCAGTGTATACAatgctatgaccctttttaaggtataaagagggga
blockSeqs : G T TTT TTA T T T C A AA A T A CATTTTTCTGT CTTTTTTT A AT TT A . T AT G A . A T A A G TT T A AA A TT C TT AAAGGTTT A TT G TTG G TG ATC AAC C C
blockSeqs : A A GTT . T T . C . . . G . . . . . . A . . . A A . . T . . T TA . G CA . T . T . . . G G . . ATA AT . C
blockSeqs : C A TTT . C C . A . . . G . . . . . . A . . . G T . . T . . T TT . A CA . T . . . . . G A . . . AT . C
blockSeqs : G G TT . A T . C . . . G . . . . . . A . . . C T . . T . . A C . A CT . T . . . . . A G . . . AC . C
blockSeqs : G . TT . A A . A . . . C . . . . . . A . . . G A . . T . . A T . G CA . T . . . . . G T . . . AC . C
blockSeqs : G . TT . T T . C . . . G . . . . . . T . . . A T . . T . . A T . G A . A . . . . . G T . . . AC . T
blockSeqs : G . TT . T . . A . . . G . . . . . . T . . . G T . . . . . A T . G C . T . . . . . G G . . . A . T
blockSeqs : . . . . . . . T . . . T . . . . . . . . . . . . . . . . T T . . A . . . . . . . . G . . . . . T
blockSeqs : . . . . . . . . . . . . . . . . . A T . . . . . . . . . . . A . . . . . A
blockSeqs : . . . . . . . . . . . G . . . . .
blockSeqs : . . . . . . . .
blockSeqCons : T**
originalCons : TAGGTGTAAGCCCACCATTGA-TT-TT-GTTCTTT---ATTCTATAGTAAATAATAAAAG-TTTGNAGGCTTGTCATTCATAGA-GAGA--CCCAAA-TGAAAGAAGTGAAACTT-ACATTTTA-----------TTGT--------TTGTCAACCTCTGCACTACC-AAAATATGATGAGAAAAGTAG--GGGTCATGTGTCAT--ATAAGAGATT-TT-TTTCTGTTCAGTGTGTACACTGTTGACAAAGTGAAAGTAGACTTCCGAAATCATGTATTCA--TACCCCAATTTCCAAGCATCATTTTT-TT-TTCTAAATTCACAAT-TCAAACAT-GACAATGC-T-T-CAAAATGTTCAAAATACAT-CAATAATGCCATTCAAATAAAAAAAT-GAGCATT-AAAATAAGG--AAAA--------TGCA-TTTTTAA--AGAAGAA--GAA-ACAAGGATTATTTATAACCGCC--ATT---ATGCGACT-ACCCC-ACGGAAGCACTTCCTGTTTCCAATGGTGGTACTATGCCTA
finalCons : TAGGTGTAAGCCCACCATTGA-TT-TT-GTTCTTT---ATTCTATAGTAAATAATAAAAG-TTTGNAGGCTTGTCATTCATAGA-GAGA--CCCAAA-TGAAAGAAGTGAAACTT-ACATTTTA-----------TTGT--------TTGTCAACCTCTGCACTACC-AAAATATGATGAGAAAAGTAG--GGGTCATGTGTCAT--ATAAGAGATT-TT-TTTCTGTTCAGTGTGTACACTGTTGACAAAGTGAAAGTAGACTTCCGAAATCATGTATTCA--TACCCCAATTTCCAAGCATCATTTTT-TT-TTCTAAATTCACAAT-TCAAACAT-GACAATGCT--T-CAAAATGTTCAAAATACAT-CAATAATGCCATTCAAATAAAAAAAT-GAGCATT-AAAATAAGG--AAAA--------TGCA-TTTTTAA--AGAAGAA--GAA-ACAAGGATTATTTATAACCGCC--ATT---ATGCGACT-ACCCC-ACGGAAGCACTTCCTGTTTCCAATGGTGGTACTATGCCTA
Alignments
lowQualScore : 1 11111111111 11111111 11111111 111
lowQualScore : 2 6 8888 777 3 6 4 1 4 55 4 2 4 99999999999 44444444 4 55 66 2 4 4 66 1 5 4 4 3 3 3 1 999 3 0 4 55 3 0 44 4 88 33333333 3 44 3 555 3 44 111 555 3 1 0
lowQualScore : . . .... ... . . . . . .. . . . ........... ........ . .. .. . . . .. . . . . . . . . ... . . . .. . . .. . .. ........ . .. . ... . .. ... ... . . .
lowQualScore : 9 0 6666 000 9 4 4 0 0 55 0 5 0 00000000000 55555555 0 55 11 2 4 4 99 9 1 0 0 2 6 6 6 666 3 8 8 99 6 4 99 0 66 22222222 6 66 8 666 3 66 777 555 6 2 7
consensus : TAGGTGTAAGCCCACCATTGA-TT-TT-GTTCTTT---ATTCTATAGTAAATAATAAAAG-TTTGNAGGCTTGTCATTCATAGA-GAGA--CCCAAA-TGAAAGAAGTGAAACTT-ACATTTTA-----------TTGT--------TTGTCAACCTCTGCACTACC-AAAATATGATGAGAAAAGTAG--GGGTCATGTGTCAT--ATAAGAGATT-TT-TTTCTGTTCAGTGTGTACACTGTTGACAAAGTGAAAGTAGACTTCCGAAATCATGTATTCA--TACCCCAATTTCCAAGCATCATTTTT-TT-TTCTAAATTCACAAT-TCAAACAT-GACAATGC-T-T-CAAAATGTTCAAAATACAT-CAATAATGCCATTCAAATAAAAAAAT-GAGCATT-AAAATAAGG--AAAA--------TGCA-TTTTTAA--AGAAGAA--GAA-ACAAGGATTATTTATAACCGCC--ATT---ATGCGACT-ACCCC-ACGGAAGCACTTCCTGTTTCCAATGGTGGTACTATGCCTA
Reference ( family-4672 ) : TAGGTGTAAGCCCACCATTGA-TT-TT-GTTCTTT---ATTCTATAGTAAATAATAAAAG-TTTGNAGGCTTGTCATTCATAGA-GAGA--CCCAAA-TGAAAGAAGTGAAACTT-ACATTTTA-----------TTGT--------TTGTCAACCTCTGCACTACC-AAAATATGATGAGAAAAGTAG--GGGTCATGTGTCAT--ATAAGAGATT-TT-TTTCTGTTCAGTGTGTACACTGTTGACAAAGTGAAAGTAGACTTCCGAAATCATGTATTCA--TACCCCAATTTCCAAGCATCATTTTT-TT-TTCTAAATTCACAAT-TCAAACAT-GACAATGC-T-T-CAAAATGTTCAAAATACAT-CAATAATGCCATTCAAATAAAAAAAT-GAGCATT-AAAATAAGG--AAAA--------TGCA-TTTTTAA--AGAAGAA--GAA-ACAAGGATTATTTATAACCGCC--ATT---ATGCGACT-ACCCC-ACGGAAGCACTTCCTGTTTCCAATGGTGGTACTATGCCTA
gi|1 : TAGGTGTAATCCCACTATTGA-TT-TT-GTTCTTT---ATTCTATAGTAAATAATAAAAG-TTTGAAGGCTTGTCATTCATAGA-GGGT--CCCAAA-TGAAAGAAGTGAAACCT-ACATTTTA-----------CTGT--------TTGTCAACCTCTGCACTATC-AAAATATGATGAGAAAAGTAG--GGGTCATGTGTCAT--ATAAGAGATTATT-TTTCTGCTCTGTGTGTACACTGGTGACAAAGTGAAAGTAGACTTCCGAAATCATGAATTCA--TACCCCAATTTCCAAGCATCATTTTTCTT-TTCTAAATTCACAAT-TCAAACAT-GACAATGC-TAT-CAAAATGTTCAAAATACAT-CAATAATGCCATTCAAATAAAAAAAT-GAGCATT-AAAAATAGG--AAAA--------TGCA-TTTTTAA--AGAAGAA--GAA-TTGAGGATTATTTACAACCGCC--ATT---ATGCGACT-ACCCC-ACGGAAGTACTTCCTTTTTGCAATGGTGGCACTATGTCTA
gi|10 : TAGGTGTAAGCTCACTATTGA-TT-------CTAT---AATATATA-TATATA-TAGCAG-TTTGCGGGCTTGTTATTCAAAGA-GAAA--TCCAAA-TTAAATAAGTGAAACTT-ACATTTTA-----------TTGT--------TTATCAACCTCTGTACTGTC-AAAATATGATGAAAAAAGTAG--GGGTCATGTGTCAT--ATAAGAG-TT-TT-TATCTGTTCAGTG
gi|11 : ACAACATCAAACATAGACAGTGT-C-T-C----TATT-ATAATA-AT--AATAATGCCATTCAAATTAAAAAA--GAGCATT-AACATAAGGT-AAAA--------TGCA-TTTTTAA--AGAAGAA--GAA-ACGAAGATTATTTATAACTGCC--ATT---ATGCAACT-ATCCC-ACGGAAGCACTTCCTTTTTCCAATGGTGGTACTATGTCTAc
gi|12 : ATTGA-GT----GTCCTTTTTAATTATATAGGGAATAA-ACATG-TTTACTCGCCT-TCATTCGTAAA-AACA--CCTTAA-TCCAAGAAGAGCAACTT-TTATTTTA-----------TTGT--------CTGTTTATATATGTATTGTCAAAAATATCGTTATAAGAGTAGATGGGT
gi|13 : a-TT-TTCTAAATTCACAAT-TCAAACAT-GAAATTGCTT-T-CAAAATGTTC-AAATGCAT-
gi|13 : ttagATTCAAACATGAAATT-G--CTTTCAAAAT---GTTCAAA--------TGCA-TTTTTAA--AAAAGAA--AAGGACAAGGATTATTTATAACCGCC--ATT---ATTCGACT-ATCCC-ATTGAAGC-CTTttttaaaaaagaaaaggacaaggattatttataaccgccattattcgactatcccattgaagcctt
gi|14 : ttagttttctaaattcacaTAA--AGAAGTA---AA-ACACGGCTTACTTATCATCATTTGATT---ATGCAACC-ACCCCCACGGAATCACTTTTTGTTTCCATTG
gi|15 : taaattaaaacgaa-T-T-CACAATACAAAAAATACAT-CAATAATGAAATTCGAATAAAAAGAT-GAGCATT-CAAATAAGG--AAAA--------TACA-CTTTTAA--ATGAAAA--GAA-ACAAacctgtgtt
gi|16 : gcttaGTCGTTTAAATCAAA---T--ACCTTC-AAGATAAGG--AAAC--------GGCAATTTTTAATTAGAA--A--TAC-CCAAGGATTATTGGTAACTGTC--GTT---ATGCGA
gi|17 : AGG--AAAA--------TACA-TTGTTAG--ATAA-AA--TAA-TAAAAGACTATTTATGACTGTC--ATT---ATGCgt
gi|18 : tttaattcTATTCAATTACTTAAGTGTT-AAGCATCAATTTT-TTATT---GATTCACAAT-TCAAACAT-GATATTTC-T-T-CAGAAagaaacatattttttgtttt
gi|19 : ATTCCCAGATATAAACTTG-TT-TTG-AAATTCACAAT-TCAGTCAT-GGCAATGC-T-T-CAGAA
gi|2 : GGTGTAAACCCACCATTGA-TT-TTTGTTCTTT---ATTCTATAGTAAACAATAAAAA-ATTGAAGGCATGTCATTCATAGA-GAAT--CTCAAA-TGAAAGAAGTGAAACCG-ACATTTTA-----------CTGT--------TTATCAACCTCTGCACTATC-AAAGAATGATGAGAAAAGTAG--GGGTCATGTGTCAT--ATAAGAGATT-TT-TTTCTGCTCAGTGTGTACATTGTTGACAAAGTGAAAGTAGACTTCCGACATCATGTATTCA--TACCTCGATTTCCAAGCATCATTTTT-TT-TTCTAAATTCACAAC-TAAAACAT-GACAATGC-TAT-CAAAATATTCAAAATTCAT-CAATAATGCCATTTAAATAAAAAAAT-GAGCATT-AAAATAAGG--AAAA--------TGCA-TTTTTAA--AGAAGAA--GAA-ACGAGGATTATTTATAACCGCC--ATT---ATGCGACT-ACCCC-ACGGAAGCACTTCCTTTTTCCAATGGTGATACTATGCC
gi|20 : CCC-ACGGAAGCACTTCCTTTTTGCAATGGTGGTACTATGCCa
gi|21 : AGGTCTAACCCCACCATTGATTT-TT-GTTCTTT---ATTCTA
gi|3 : TAGGTG--AGCCCACCATTGA-TTGTT-GTTCTTT---ATTGTATAGTAAAAAACATTAT-TTTGCAGGCTTGTCATTCATAGA-GAGA--CCCAG--TGAAA-AATTGAAACTT-GCATTTTA-----------TTGT--------TTGTTAACATCTGCACTACA-AAAATATAACGATAAAAATAG--GGGTCATGTGCCAT--ATAAGAGATT-TT--TTCTGTTCAATGTGCATACTGTTGACAAAGTGAAAGTAGACTTCCGAAATCAGGTATTCA--TACCCCAATTTCAAACCATCATTTCT-TT-TACTAAGTTCACAAT-TCAAACG---------------CAAAATGTTCAAATTACAT-CAATAATGCCATTCAAATAAACAAAA-GAGCATT-ACAATAAGG--AACA--------TGCA-TTTTTAC--AGAAGAA--GAA-ACAAGAATTAACTGTAACCGTC--ATT---ATT---CT--------------CATTTCTTGTTTCCAATGGTGGTATTATGC
gi|4 : AGGTGTAAGCCCACAATTAAATT-TT-GTTCTTT---ATCTTATAGTATAAAATAAAAG-TTTGAAGGCTTGTCAATCATAGA-GAGA--CCCAAA-GGAAAGAAGTGCAGCTT-ATATTTTA-----------CTGT--------TTGTTAACTTCTGCACTACC-ACAGTATGACGAGAAAAGCAG--GGGCCATATTTCAT--ATAAGATATT-TC-TTTCTGTTCAGTGTGTACACTGTTGACAAAGTTAAAGTAGACTTCCGAAGTCATGTATTCA--TTCCTCAATTTCCAAGCATCAATTTA-TT-TTCTAAATTCGCAAT-TCAAACAT-GGCAATGC-T-T-TAGAAT-----AAAGA------------------AAATGA---------GCCTT-AAAATAAGG--AAAA--------TGCG-TTTTTAA--AGA--AA--AAA-ACAAGGATTCTTTAGAACCGCC--ATT---ATG-------------CGGAAGCATTTCCTGTTTTAAATGGTGGTTCTATACCta
gi|5 : GTCATTCATAGA-GAGA--CCCAAA-TGAAACAAGTGAAACTT-ACATTTAACATTTTTCTGTTTGTCTTTTTTTTTGTCAACCTCTGCACTTCC-AAAGTGTGATGAGAAAAGTAT--GG-TCATGTGTCATTTATAAGAGATT-AT-TTTCTTCTAAATGTTTACACTGTTGACAAAATGAAAGTTGAC----GAAATCATGTATTCA--TACCATAATTGCCAT---TCATTATT-GT-TTCTAAATTCACAAT-TCAAACAT-GACAAAGC-T-TTCAAAATGTTCTAAATACAT-CAATAACGCCATTCAAATAAAAAAAT-GAGCATT-AAAACAAGG--AAAA--------TGCA-TTATTAA--AGAAGAA--GAA-ATAATGACTATTTATAACCGCC--ATTATCATGCGACT-A---C-ACAAACGCA--TCCTGTTTCCAATGGTGGTGCT
gi|6 : AGCCCACCATTGAATT-TT-GTTCTTT---ATGCCTTAGTTAA-AAAAAAAGTTTTGCAGGCTTGTCATTCATAGT-GAAA--CCCAAA-TGAAAGAAGTGGGACTT-ACATTTTA-----------TTGT--------TTGGCAACATTTGCACTACT-AAAATATGATGAGAAAAGTAG--GGGTCATTTGTCAT--CCAAGATATT-AG-TTT-TGTTCAGTGTATACACGGTTGACCAAGTGAAAGTAGACTTCCGAAATCATTTATTCA--TACCCCGATTTCCAAACATCATTTTT-TT-TTC-AA------AAC-TCGAACAT-GACATTGCTT-T-CAAAATGCT-AAAATACAT-CGATAATGTCATTCAAgagc
gi|6 : CAATGATTATTTATAACCGCA--ATT---ATGCGCCT-ACTCC-ACGGAAGCATTTCCTGTTTGCAATGtgattatttataaccgcaattatgcgcctactccacggaagcatttcctgtttgcaatgacaat
gi|7 : agcccaccattgaattttgttctttatgccttagttaaaaaaaaagttttgcaggcttgtcattcatagtgaaacccaaatgaaagaagtgggacttacattttattgtttggcaacatttgcactactaaaatatgatgagaaaagtaggggtcatttgtcatccaagatattagttttgttcagtgtatacacggttgaccaagtgaaagtagacttccgaaatcatttattcataccccgatttccaaacatcatttttttttcaaaactcgaacatgacattgctttcaaaatgctaaaatacatcgataatgtcattGTGTAA-CGCACCGTTGA-TT-TTTGTTCTTT---ATTCTATAGTAAATAATAAAAG-TTTGAAGGCTCGTCATTTAAAGAAGAGA--CTCAAAATGAAAGAAGTGAAACTA-ACATTTTA-----------TTGT--------TTGTTTACCTCTGCACTACC-AATTTATAATGAGAAAAGTAG--GGGTCATGTGTCAT--ATAAGATTTT-TTTTTTCTGTTCAGTGAGTACGTTGTTGAAAAAGTGAAAGTATACTTCCGAAATCATGTATTCA--TACCCCAATTTCCAAGCATCA-TTTT-TT-TTCTAAATTCACAAT-TCAAACAT-GACAATG----------AT-TTCAAAATACAT-CAATAATGTCATTCAAAacaat
gi|8 : CATACAACAACATCTTTCAAATAACAAAATTGACCATA-AAAATAAGG--GAAAAAAGGTTTTTTA-TTTTTAA--A-----ATTGAA-ACAAGGATCATTTATGGCTACC--ATTATAATGCAACTAACCCC-A-AAAAGCAATTCCTGTTTTTAATG--GGTA-TGTGCctgta
gi|9 : tatgactgaaaaattgttgaaagtgacgcttaacacAGGTGCGAGCCAACCACTGAGTT-TT-GTTGCTT---ATTCTATAGTAAATAA-AAAGG-ATTGTAGGCTTGTCATTCATAGA-GAGAAACCCAAA-TGAAATAAGTGAAACTTAAAATTTTA-----------TTGT--------TTATCAACCTCTGCATTACC-AAAATAGGAT-AGAAAAATTG--GGACCATGTGCCAT--CCAAGAGTTT-TT-TTTCTGTTCAGTGTATACAatgctatgaccctttttaaggtataaagagggga