lowQualScore : 2222 22222222 22222 111 22 444444444444444444444444444444444444444444 11 1 11
lowQualScore : 5555 5 66666666 11111 111 22 444444444444444444444444444444444444444444 3 33 0 6 2 00 1 8 6 6
lowQualScore : .... . ........ ..... ... .. .......................................... . .. . . . .. . . . .
lowQualScore : 8888 0 88888888 44444 222 66 333333333333333333333333333333333333333333 3 55 7 9 1 88 8 2 0 7
consensus : ATTCTCCCTTTCCGGAGCACAACTCCAAAATCTA---GTGGTCTNGNAGTG-CNTTTTTGCTGTGAAGT----ANTTTT--------AATTTTC-G-A-----AN---T-CAGAACATCT-AAGTAAAATACCCCAT-GGCGGGGGATATTGACGACTACGTCTTCTT-GTTA
Reference ( gi|8 ) : ATTCTTCCTTTCTGTTGCACAACTCCAAGAGCTA---TTGGT-TAAAAGTG-CTTTTTTGCTGTGAAGT----AGTTTC--------AGTTTTC-A-A-----AG---T-CAGAACATCT-TAGTAAACTACTCCAT-TGCGGGGGATATTGACAACTGCGTCTTCCT-GTTA
gi|1 : ATTCTTCCTTTCCAGAGCACAACTCCAAAATCTA---GTGGTCTAGTAGTA-CATTTTAA--GTGAAGT----ATTTTTTATA----AATTTTCCG-A-----AA---T-CAAAACATCT-TAATGAAATAACCCAC-AGGGAGGGATATTAAAGAATACATCTTCTTGGTTA
gi|3 : attttctaccttggaaacaattagccaaaataaccctTCTCCTTTTCCAGTACAGAATTTCAAAATCTT---GTGATCTAGTAGTGGCTTTACT-CTGTGT-GTTTTAAGTTTC--------ATGATTC-AGA-----AG---T-CGGATAATCG-T-GTAAAATGCCCCAT-TGCGGGGGATATTGACAACCACCTCTTCataattaaatgacaacacaacacattgaa
gi|2 : ttctgttactatggaaacaattagcacatatattatatcgaaagaagTCCCTTTCCGGAGCACAACTACAANNNNNN---NNNNN-NNNNNNNN-NNNNNNNNNNNNNNNNN----NNNNNNNNGATTGAAGTTTAA-A-A-----AC---T-CAGAACATCT-AAATGAAATACCCCAT-GACGGAGGATATTGATAACTACATTTTCTT-GT
gi|15 : TTCCTTTCTGGAGCACAACTCCTAAACCTA---GTGGT-attcagttagtgtataatttagctaccacaaagctgaaatgctc
gi|7 : ACAACTCTAAAA-CTAAAAGTGGTCTTGAAGTG-CCTTTTT-CTGTGAA----------TG--------AGTTTTA-A-A-----AC---T-TG--ACATCT-AAGAACAATATCCGAT-GGCGGGGAATATTGATGACTACATccagtagagacttaaaatgtagcatgctactctccaaaa
gi|9 : actttgttacaagggaaacaactagtaaaatttataaaaaaaaaattccgttcggaatT-TCAAAGTG-C-CTTTTGGTATGAGGG----AGTTTT--------A-TTTTC-A-AGTATCAGACCT-CAAAACATGA-GAGTAAAATACTACA--TG-AAGGAATACTGA
gi|12 : atggaaatgaataaccaaacattagaattttctgttttcggagcacaaT----ATTTTC--------AACTTTCTG-A-----AC---T-CAGAACACCC-AATTAAA--ATTCCTTATGCCAGGAATATTGACAACTACGTCATCTT-ATTag
gi|4 : ttgcTTTT--------AAGTCTC-A-G-----AA---CGCAAAACA-----AGTAAAATACTCAAT-GGTGGGGGATATTGTCGACTATGTATTTTT-GTCA
gi|10 : cccattgaaccaaatagccacaattatgatattctaataagtttaaacccgttccagaaaataccaagaaactttgctcacagtattgtcttatgctacgagtttct---T-CAGAACATCT-AAATAAAGTGAGCCAT-GTTGGGAGATATTGACGACTGCGTCTTCTT-GTTt
gi|18 : tgtt---T-CAGAACATTT-AAGTAAAATACT-CAT-GGCAGGCGATATTGAAGACTTTGTCTTCcaccattattatacactatgttactgctactcacaaacggttgaagtaattaattaccc
gi|13 : t---T-CAGAACAGCTATA-TAAAATACCCAAT-GGTGGGAGATATTGACGACTACATt
gi|17 : gtt-CAGAACATCT-AAATAAAATACCCCGT-GACGGGGGATATTGATGACTACGTCTTatctttggttattatcaaatgtga
gi|14 : -CAAAACATCT-AAGTAAAATACCCCAT-GGCAGGAGATATAAACCACT-TGTCTTTTT-GTTtattc
gi|16 : gaAGTGAAATATCCCAT-TGCAGTGGATACTGACAACTATATCTTtccagttctaggtaaaa
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|5 ): TTCTTGCTTCAGAAACAATAACCAAATTTATGTTCCGTTCCGGAGCAAAAACTCCAAAATCTAGATATCTAGTAGAACCTTTTACTACAAATGGGTTTTCACCTGCAGGTTTCTGAACTCGAACAGTAAAATATAAATGGCAGGGACAATTGAAGGACAATGTCGTTTTGTTGCTTTAATA
Unaligned ( gi|6 ): TGGAAACAATTAGTAAAATTGATGAAATTCTCCATTACTGGAGTGTAATTCAAAAACCTAGTACTTTAGTACAGATAGAGCCTTGTGCTAAGTGTGAGTTTTCATTTTCAAGTTTCAGAACTCAAAACATAAGATGTTGAAGGATATTGGTGACTATAGGTCTTCCTGTTGAATTTTGAT
Unaligned ( gi|11 ): TGCAAAAACTACCAAATTCTCTCTATCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAA
Unaligned ( gi|19 ): GTTTCCAGACACAACTTCAAAACCTAGTGGTCTAATG
Alignments
lowQualScore : 111111 11111111111111 333333333333333333333333333333
lowQualScore : 4 6 777 0 2 2 222222 55 999 1 22222222222222 000000000000000000000000000000 44 2 55555 5555 2 0 2 33 8
lowQualScore : . . ... . . . ...... .. ... . .............. .............................. .. . ..... .... . . . .. .
lowQualScore : 0 2 000 2 6 6 888888 55 000 6 44444444444444 000000000000000000000000000000 11 7 11111 7777 7 5 7 99 0
consensus : ATTCTCCCTTTCCGGAGCACAA-CTCCAAAACCTA---GTGGTCTAGTA------GTGCCTTTTTGCTGTGAAGT---AGT------TTT----AA--------TTTT-C--------G-AAC-T-CAGAACATC---TAA----GTAAAATACCCCATGGCGGGGGATATTG-ACGACTAC--GTCTTCTT-GTTA
Reference ( family-462 ) : ATTCTCCCTTTCCGGAGCACAA-CTCCAAAATCTA---GTGGTCTNGNA------GTGCNTTTTTGCTGTGAAGT---ANT------TTT----AA--------TTTT-C--------G-AAN-T-CAGAACATC---TAA----GTAAAATACCCCATGGCGGGGGATATTG-ACGACTAC--GTCTTCTT-GTTA
gi|1 : ATTCTTCCTTTCCAGAGCACAA-CTCCAAAATCTA---GTGGTCTAGTA------GTACATTTTAA--GTGAAGT---ATT------TTTTATAAA--------TTTTCC--------G-AAA-T-CAAAACATC---TTA----ATGAAATAACCCACAGGGAGGGATATTA-AAGAATAC--ATCTTCTTGGTTA
gi|10 : attttctaccttggaaacaattagccaaaataaccct-T-CAGAACATC---TAA----ATAAAGTGAGCCATGTTGGGAGATATTG-ACGACTGC--GTCTTCTT-GTTataattaaatgacaacacaacacattgaa
gi|12 : tgttT---ATT------TTC----AA--------CTTT-CT-------G-AAC-T-CAGAACACC---CAA----TTAAAATTCCTTATGCCAGGA-ATATTG-ACAACTAC--GTCATCTT-ATTcaccattattatacactatgttactgctactcacaaacggttgaagtaattaattaccc
gi|13 : ttgc-T-CAGAACAGC---TAT----ATAAAATACCCAATGGTGGGAGATATTG-ACGACTAC--ATATCTTTGGTTA
gi|14 : gtt-CAAAACATC---TAA----GTAAAATACCCCATGGCAGGAGATATAA-ACCACT-T--GTCTTTTT-GTTttatcaaatgtga
gi|15 : gaTTCCTTTCTGGAGCACAA-CTCCTAAACCTA---GTGGTCCAGTA------Gtccagttctaggtaaaa
gi|17 : -CAGAACATC---TAA----ATAAAATACCCCGTGACGGGGGATATTG-ATGACTAC--GTCTTagacttaaaatgtagcatgctactctccaaaa
gi|18 : -T-CAGAACATT---TAA----GTAAAATACTC-ATGGCAGGCGATATTG-AAGACTTT--GTCTTCTtattc
gi|19 : tTTTCCAGA-CACAA-CTTCAAAACCTA---GTGGTCT
gi|2 : gTCCCTTTCCGGAGCACAA-CTACAANNNNNN---NNNNNNNNNNN------NNNNNNNNNNNNNNNNNNNN---NNNNNNNGATTG----AA--------GTTT-A--------A-AAACT-CAGAACATC---TAA----ATGAAATACCCCATGACGGAGGATATTG-ATAACTAC--ATTTTCTT-GTaatg
gi|3 : TCTCCTTTTCCAGTACAGAA-TTTCAAAATCTT---GTGATCTAGTA------GTGGCTTTACTCTGTG---T----GT------TTT----AA--------GTTT-C--------ATGAT-T-CAGAA-GTCGGATAATCGTGTAAAATGCCCCATTGCGGGGGATATTG-ACAACCAC--CTCTTCattcagttagtgtataatttagctaccacaaagctgaaatgctc
gi|4 : ttctgttactatggaaacaattagcacatatattatatcgaaagaagT------TTT----AA--------GTCT-CA-------G-AAC-G-CAAAACA-------A----GTAAAATACTCAATGGTGGGGGATATTG-TCGACTAT--GTATTTTT-GTCA
gi|5 : cccattgaaccaaatagccacaattatgatattctaataagtttaaacccgttccagaaaataccaagaaactttgctcacagtattgtcttatgctacgagtttctTTCCGTTCCGGAGCAAAAACTCCAAAATCTA---GATATCTAGTA------GAACC-TTTTACTACAAATG---GGT------TTT----CACCTGCAGGTTTC-T--------G-AAC-T-C-GAAC--------A----GTAAAATA-TAAATGGCAGGGACAATTGAAGGACAAT--GTCGTTTT-GTTt
gi|6 : ttcttgcttcagaaacaataaccaaatttatgATTCTCCATTACTGGAGTGTAA-TTCAAAAACCTA---GTACTTTAGTACAGATAGAGCCTTGT-GCT---AAGTGTGAGT------TTT----CA--------TTTT-C--------A-AGT-TTCAGAAC-TC------------AAAACATAAGATGTTGAAGGATATTG-GTGACTATAGGTCTTCCT-GTTgctttaata
gi|7 : tggaaacaattagtaaaattgatgaaTTCGGAATACAA-CTCTAAAA-CTAAAAGTGGTCTTGAA------GTGCCTTTTT-CTGTGAATG---AGT------TTT----AA------------------------AAC-T-TG--ACATC---TAA----GAACAATATCCGATGGCGGGGAATATTG-ATGACTAC--ATgaattttgat
gi|8 : actttgttacaagggaaacaactagtaaaatttataaaaaaaaaattccgATTCTTCCTTTCTGTTGCACAA-CTCCAAGAGCTA---TTGGT-TAAAA------GTGCTTTTTTGCTGTGAAGT---AGT------TTC----AG--------TTTT-C--------A-AAG-T-CAGAACATC---TTA----GTAAACTACTCCATTGCGGGGGATATTG-ACAACTGC--GTCTTCCT-GTTA
gi|9 : ATTTTCTGTTTTCGGAGCACAA--TTCAA-------------------A------GTGCC-TTTTGGTATGAGGG---AGT------TTT-----A--------TTTT-CAAGTATCAG-ACC-T-CAAAACATG---AGA----GTAAAATACTACATG--AAGGAATACTG-A
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TGCAAAAACTACCAAATTCTCTCTATCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAA
Unaligned ( gi|16 ): ACTCAGAATAAATATAAGTAAGTGAAATATCCCATTGCAGTGGATACTGACAACTATATCTTGTTTTATT
Alignments
lowQualScore : 111111 111 111111111111111 333333333333333333333333333333
lowQualScore : 3 55 2 7777 0 3 000000 1 000 2 666666666666666 000000000000000000000000000000 7 33 444 5555 5555 1 2 33 7
lowQualScore : . .. . .... . . ...... . ... . ............... .............................. . .. ... .... .... . . .. .
lowQualScore : 6 00 2 3333 7 6 555555 8 222 1 000000000000000 000000000000000000000000000000 3 44 444 3333 3333 9 5 77 3
consensus : ATTCTCCCTTTCCGGAGCACAA-CTCCAA--AACCTA---GTGGTC-TAG------TAGTGCCTTTTTGCTGCGAAGT---AGT------TTT----AA--------TTTT-C--------G-AA-CTCAGAAC--ATC---TAA----GTA----AAATACCCCATGGCGGGGGATATTG-ACGACTAC--GTCTTCTT-GTTA
Reference ( family-462 ) : ATTCTCCCTTTCCGGAGCACAA-CTCCAA--AACCTA---GTGGTC-TAG------TAGTGCCTTTTTGCTGTGAAGT---AGT------TTT----AA--------TTTT-C--------G-AA-CTCAGAAC--ATC---TAA----GTA----AAATACCCCATGGCGGGGGATATTG-ACGACTAC--GTCTTCTT-GTTA
gi|1 : ATTCTTCCTTTCCAGAGCACAA-CTCCAA--AATCTA---GTGGTC-TAG------TAGTACATTTTAA--GTGAAGT---ATT------TTTTATAAA--------TTTTCC--------G-AA-ATCAAAAC--ATC---TTA----ATG----AAATAACCCACAGGGAGGGATATTA-AAGAATAC--ATCTTCTTGGTTA
gi|10 : attttctaccttggaaacaattagccaaaataaccctTCAGAAC--ATC---TAA----ATA----AAGTGAGCCATGTTGGGAGATATTG-ACGACTGC--GTCTTCTT-GTTataattaaatgacaacacaacacattgaa
gi|12 : tgttT---ATT------TTC----AA--------CTTT-CT-------G-AA-CTCAGAAC--ACC---CAA----TTA----AAATTCCTTAT-GCCAGGAATATTG-ACAACTAC--GTCATCTT-ATTcaccattattatacactatgttactgctactcacaaacggttgaagtaattaattaccc
gi|13 : ttgcTCAGAAC--AGC---TAT----ATA----AAATACCCAATGGTGGGAGATATTG-ACGACTAC--ATATCTTTGGTTA
gi|14 : gttCAAAAC--ATC---TAA----GTA----AAATACCCCATGGCAGGAGATATAA-ACCACT-T--GTCTTTTT-GTTttatcaaatgtga
gi|15 : gaTTCCTTTCTGGAGCACAA-CTCCTA--AACCTA---GTGGTC-CAG------TAGAGACTTtccagttctaggtaaaa
gi|16 : A-CTCAGAATAAATA---TAA----GTAAGTGAAATATCCCATTGCAGTGGATACTG-ACAACTAT--ATCTTGTT--TTAaaaatgtagcatgctactctccaaaa
gi|17 : CAGAAC--ATC---TAA----ATA----AAATACCCCGTGACGGGGGATATTG-ATGACTAC--GTCTTtt
gi|18 : TCAGAAC--ATT---TAA----GTA----AAATACTC-ATGGCAGGCGATATTG-AAGACTTT--GTCTTCTtattc
gi|19 : tTTTCCAGA-CACAA-CTTCAA--AACCTA---GTGGTC-TAA------T
gi|2 : gTCCCTTTCCGGAGCACAA-CTACAA--NNNNNN---NNNNNN-NNN------NNNNNNNNNNNNNNNNNNNNNN---NNNNNNNGATTG----AA--------GTTT-A--------A-AAACTCAGAAC--ATC---TAA----ATG----AAATACCCCATGACGGAGGATATTG-ATAACTAC--ATTTTCTT-GTg
gi|3 : TCTCCTTTTCCAGTACAGAA-TTTCAA--AATCTT---GTGATC-TAG------TAGTGGCTTTACTCTGTG---T----GT------TTT----AA--------GTTT-C--------ATGA-TTCAGAA---GTCGGATAATCGTGTA----AAATGCCCCATTGCGGGGGATATTG-ACAACCAC--CTCTTCattcagttagtgtataatttagctaccacaaagctgaaatgctc
gi|4 : ttctgttactatggaaacaattagcacatatattatatcgaaagaagCCCGTTCCAGAAAATA----CCAAGAAACTT-----TGCTCACAG------TATTGTCTTAT-GCTACGA-GTTT-CTT------TTT----AA--------GTCT-CA-------G-AA-CGCAAAAC--A-------A----GTA----AAATACTCAATGGTGGGGGATATTG-TCGACTAT--GTATTTTT-GTCA
gi|5 : cccattgaaccaaatagccacaattatgatattctaataagtttaaaTTCCGTTCCGGAGCAAAAACTCCAA--AATCTA---GATATC-TAG------TAGAACC-TTTTACTACAAATG---GGT------TTT----CACCTGCAGGTTTC-T--------G-AA-CTC-GAAC----------A----GTA----AAATA-TAAATGGCAGGGACAATTGAAGGACAAT--GTCGTTTT-GTTt
gi|6 : ttcttgcttcagaaacaataaccaaatttatgATTCTCCATTACTGGAGTGTAA-TTCAAA--AACCTA---GTACTT-TAGTACAGATAGAGCC-TTGTGCT---AAGTGTGAGT------TTT----CA--------TTTT-C--------A-AGTTTCAGAAC---TC------------A----AAACATAAGATGTTGAAGGATATTG-GTGACTATAGGTCTTCCT-GTTgctttaata
gi|7 : tggaaacaattagtaaaattgatgaaTTCGGAATACAA-CTCTAA--AAC-TAAAAGTGGTC-TTG------AAGTGCCTTTTT-CTGTGAATG---AGT------TTT----AA------------------------AA-CTTG--AC--ATC---TAA----GAA----CAATATCCGATGGCGGGGAATATTG-ATGACTAC--ATgaattttgat
gi|8 : actttgttacaagggaaacaactagtaaaatttataaaaaaaaaattccgATTCTTCCTTTCTGTTGCACAA-CTCCAA--GAGCTA---TTGGT--TAA------AAGTGCTTTTTTGCTGTGAAGT---AGT------TTC----AG--------TTTT-C--------A-AA-GTCAGAAC--ATC---TTA----GTA----AACTACTCCATTGCGGGGGATATTG-ACAACTGC--GTCTTCCT-GTTA
gi|9 : ATTTTCTGTTTTCGGAGCACAA-TTC-----AA------------------------AGTGCCTTTTGG-TATGAGGG---AGT------TTT----A---------TTTT-CAAGTATCAG-AC-CTCAAAAC--ATG---AGA----GTA----AAATACTACATG--AAGGAATACTG-A
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TGCAAAAACTACCAAATTCTCTCTATCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAA
Alignments
lowQualScore : 111111 11111111111111111111111 333333333333333333333333333333
lowQualScore : 3 55 2 7777 0 3 000000 1 66666666666666666666666 000000000000000000000000000000 7 33 444 5555 5555 1 2 33 7
lowQualScore : . .. . .... . . ...... . ....................... .............................. . .. ... .... .... . . .. .
lowQualScore : 6 00 2 3333 7 6 555555 8 66666666666666666666666 000000000000000000000000000000 3 44 444 3333 3333 9 5 77 3
consensus : ATTCTCCCTTTCCGGAGCACAA-CTCCAA--AACCTA---GTGGTC-TAG------TAGTGCCTTTTTGCTGCGAAGT---AGT------TTT----AA--------TTTT-C--------G-AA-CTCAGAAC--ATC---TAA----GTA----AAATACCCCATGGCGGGGGATATTG-ACGACTAC--GTCTTCTT-GTTA
Reference ( family-462 ) : ATTCTCCCTTTCCGGAGCACAA-CTCCAA--AACCTA---GTGGTC-TAG------TAGTGCCTTTTTGCTGCGAAGT---AGT------TTT----AA--------TTTT-C--------G-AA-CTCAGAAC--ATC---TAA----GTA----AAATACCCCATGGCGGGGGATATTG-ACGACTAC--GTCTTCTT-GTTA
gi|1 : ATTCTTCCTTTCCAGAGCACAA-CTCCAA--AATCTA---GTGGTC-TAG------TAGTACATTTTAA--GTGAAGT---ATT------TTTTATAAA--------TTTTCC--------G-AA-ATCAAAAC--ATC---TTA----ATG----AAATAACCCACAGGGAGGGATATTA-AAGAATAC--ATCTTCTTGGTTA
gi|10 : attttctaccttggaaacaattagccaaaataaccctTCAGAAC--ATC---TAA----ATA----AAGTGAGCCATGTTGGGAGATATTG-ACGACTGC--GTCTTCTT-GTTataattaaatgacaacacaacacattgaa
gi|12 : tgttT---ATT------TTC----AA--------CTTT-CT-------G-AA-CTCAGAAC--ACC---CAA----TTA----AAATTCCTTAT-GCCAGGAATATTG-ACAACTAC--GTCATCTT-ATTcaccattattatacactatgttactgctactcacaaacggttgaagtaattaattaccc
gi|13 : ttgcTCAGAAC--AGC---TAT----ATA----AAATACCCAATGGTGGGAGATATTG-ACGACTAC--ATATCTTTGGTTA
gi|14 : gttCAAAAC--ATC---TAA----GTA----AAATACCCCATGGCAGGAGATATAA-ACCACT-T--GTCTTTTT-GTTttatcaaatgtga
gi|15 : gaTTCCTTTCTGGAGCACAA-CTCCTA--AACCTA---GTGGTC-CAG------TAGAGACTTtccagttctaggtaaaa
gi|16 : A-CTCAGAATAAATA---TAA----GTAAGTGAAATATCCCATTGCAGTGGATACTG-ACAACTAT--ATCTTGTT--TTAaaaatgtagcatgctactctccaaaa
gi|17 : CAGAAC--ATC---TAA----ATA----AAATACCCCGTGACGGGGGATATTG-ATGACTAC--GTCTTtt
gi|18 : TCAGAAC--ATT---TAA----GTA----AAATACTC-ATGGCAGGCGATATTG-AAGACTTT--GTCTTCTtattc
gi|19 : tTTTCCAGA-CACAA-CTTCAA--AACCTA---GTGGTC-TAA------T
gi|2 : gTCCCTTTCCGGAGCACAA-CTACAA--NNNNNN---NNNNNN-NNN------NNNNNNNNNNNNNNNNNNNNNN---NNNNNNNGATTG----AA--------GTTT-A--------A-AAACTCAGAAC--ATC---TAA----ATG----AAATACCCCATGACGGAGGATATTG-ATAACTAC--ATTTTCTT-GTg
gi|3 : TCTCCTTTTCCAGTACAGAA-TTTCAA--AATCTT---GTGATC-TAG------TAGTGGCTTTACTCTGTG---T----GT------TTT----AA--------GTTT-C--------ATGA-TTCAGAA---GTCGGATAATCGTGTA----AAATGCCCCATTGCGGGGGATATTG-ACAACCAC--CTCTTCattcagttagtgtataatttagctaccacaaagctgaaatgctc
gi|4 : ttctgttactatggaaacaattagcacatatattatatcgaaagaagCCCGTTCCAGAAAATA----CCAAGAAACTT-----TGCTCACAG------TATTGTCTTAT-GCTACGA-GTTT-CTT------TTT----AA--------GTCT-CA-------G-AA-CGCAAAAC--A-------A----GTA----AAATACTCAATGGTGGGGGATATTG-TCGACTAT--GTATTTTT-GTCA
gi|5 : cccattgaaccaaatagccacaattatgatattctaataagtttaaaTTCCGTTCCGGAGCAAAAACTCCAA--AATCTA---GATATC-TAG------TAGAACC-TTTTACTACAAATG---GGT------TTT----CACCTGCAGGTTTC-T--------G-AA-CTC-GAAC----------A----GTA----AAATA-TAAATGGCAGGGACAATTGAAGGACAAT--GTCGTTTT-GTTt
gi|6 : ttcttgcttcagaaacaataaccaaatttatgATTCTCCATTACTGGAGTGTAA-TTCAAA--AACCTA---GTACTT-TAGTACAGATAGAGCC---TTG-TGCTAAGTGTGAGT------TTT----CA--------TTTT-C--------A-AGTTTCAGAAC---TC------------A----AAACATAAGATGTTGAAGGATATTG-GTGACTATAGGTCTTCCT-GTTgctttaata
gi|7 : tggaaacaattagtaaaattgatgaaTTCGGAATACAA-CTCTAA--AAC-TAAAAGTGGTC-TTG------AAGTGCCTTTTT-CTGTGAATG---AGT------TTT----AA------------------------AA-CTTG--AC--ATC---TAA----GAA----CAATATCCGATGGCGGGGAATATTG-ATGACTAC--ATgaattttgat
gi|8 : actttgttacaagggaaacaactagtaaaatttataaaaaaaaaattccgATTCTTCCTTTCTGTTGCACAA-CTCCAA--GAGCTA---TTGGT--TAA------AAGTGCTTTTTTGCTGTGAAGT---AGT------TTC----AG--------TTTT-C--------A-AA-GTCAGAAC--ATC---TTA----GTA----AACTACTCCATTGCGGGGGATATTG-ACAACTGC--GTCTTCCT-GTTA
gi|9 : ATTTTCTGTTTTCGGAGCACAA-TTC-----AA------------------------AGTGCCTTTTGG-TATGAGGG---AGT------TTT----A---------TTTT-CAAGTATCAG-AC-CTCAAAAC--ATG---AGA----GTA----AAATACTACATG--AAGGAATACTG-A
blockSeqs : A GA C AAAA A TACAGA T NNNNNNNNNNNNNNNNNNGA CACCTGCAGGTTTCTG A AA GGA TCGT AGTG C A AG G
blockSeqs : . . C A . . N TGTGCTAAGTGTGAGT ATTTTCAAGTATCAG T . . . . T . . .
blockSeqs : . . N A . . T GCTACGAGTTTCTT AACTTTCTG . . . . . A . . .
blockSeqs : . . T N . . T TACTACAAATGGGT AAGTTTCAT . . . . . C . . .
blockSeqs : . . C T . . T TGCTGTGAAGTAGT AAGTCTCAG . . . . . C . . .
blockSeqs : . . T A . . T TCTGTGAATGAGT AAGTTTAA . . . . . C . . .
blockSeqs : . . C A . . T GGTATGAGGGAGT CATTTTCA . . . . . C . . .
blockSeqs : . . C A . . . CTCTGTGTGT AGTTTTCA . . . . . C . . .
blockSeqs : . . G . . . . AA . . . . . A . . .
blockSeqs : . . . . . . . . . . . A . . .
blockSeqs : . . . . G . .
blockSeqs : . . . . G . .
blockSeqs : . . . . C . .
blockSeqs : . . . . C . .
blockSeqs : . . . . . .
blockSeqCons : TCTGCGAANGAGT********** AAGTTTCAG*********************
originalCons : ATTCTCCCTTTCCGGAGCACAA-CTCCAA--AACCTA---GTGGTC-TAG------TAGTGCCTTTTTGCTGCGAAGT---AGT------TTT----AA--------TTTT-C--------G-AA-CTCAGAAC--ATC---TAA----GTA----AAATACCCCATGGCGGGGGATATTG-ACGACTAC--GTCTTCTT-GTTA
finalCons : ATTCTCCCTTTCCGGAGCACAA-CTCCAA--AACCTA---GTGGTC-TAG------TAGTGCCTTTTTCTGCGAANGAGT----------TTTAAGTTTCAG---------------------AA-CTCAGAAC--ATC---TAA----GTA----AAATACCCCATGGCGGGGGATATTG-ACGACTAC--GTCTTCTT-GTTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TGCAAAAACTACCAAATTCTCTCTATCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAA
Alignments
lowQualScore : 111111 11 1111111 44444444444444444444
lowQualScore : 3 55 2 7777 0 3 000000 4 77 11 0 1 3333333 33333333333333333333 2 22 33 1 444 5555 5555 1 2 33 7
lowQualScore : . .. . .... . . ...... . .. .. . . ....... .................... . .. .. . ... .... .... . . .. .
lowQualScore : 6 00 2 3333 7 6 555555 4 44 66 3 0 0000000 44444444444444444444 5 66 44 1 444 3333 3333 9 5 77 3
consensus : ATTCTCCCTTTCCGGAGCACAA-CTCCAA--AACCTA---GTGGTC-TAG------TAGTGCCTTT-TN-CTGTGAANGAGT-------TT-----T-------A------AGTTTCAGAACTCAGAAC--ATC---TAA----GTA----AAATACCCCATGGCGGGGGATATTG-ACGACTAC--GTCTTCTT-GTTA
Reference ( family-462 ) : ATTCTCCCTTTCCGGAGCACAA-CTCCAA--AACCTA---GTGGTC-TAG------TAGTGCCTTT-TT-CTGCGAANGAGT-------TT-----T-------A------AGTTTCAGAACTCAGAAC--ATC---TAA----GTA----AAATACCCCATGGCGGGGGATATTG-ACGACTAC--GTCTTCTT-GTTA
gi|1 : ATTCTTCCTTTCCAGAGCACAA-CTCCAA--AATCTA---GTGGTC-TAG------TAGTACA-TT-TT-AAGTGAAGTATT-------TT-----TTATA---A------ATTTTCCGAAATCAAAAC--ATC---TTA----ATG----AAATAACCCACAGGGAGGGATATTA-AAGAATAC--ATCTTCTTGGTTA
gi|10 : attttctaccttggaaacaattagccaaaataaccctTCAGAAC--ATC---TAA----ATA----AAGTGAGCCATGTTGGGAGATATTG-ACGACTGC--GTCTTCTT-GTTataattaaatgacaacacaacacattgaa
gi|12 : tgttT-------TT-----C-------A------ACTTTCTGAACTCAGAAC--ACC---CAA----TTA----AAATTCCTTAT-GCCAGGAATATTG-ACAACTAC--GTCATCTT-ATTcaccattattatacactatgttactgctactcacaaacggttgaagtaattaattaccc
gi|13 : ttgctatTCAGAAC--AGC---TAT----ATA----AAATACCCAATGGTGGGAGATATTG-ACGACTAC--ATATCTTTGGTTA
gi|14 : gttCAAAAC--ATC---TAA----GTA----AAATACCCCATGGCAGGAGATATAA-ACCACT-T--GTCTTTTT-GTTttatcaaatgtga
gi|15 : gaTTCCTTTCTGGAGCACAA-CTCCTA--AACCTA---GTGGTC-CAG------TAGAGACTTtccagttctaggtaaaa
gi|16 : ACTCAGAATAAATA---TAA----GTAAGTGAAATATCCCATTGCAGTGGATACTG-ACAACTAT--ATCTTGTT--TTAaaaatgtagcatgctactctccaaaa
gi|17 : CAGAAC--ATC---TAA----ATA----AAATACCCCGTGACGGGGGATATTG-ATGACTAC--GTCTTtt
gi|18 : TCAGAAC--ATT---TAA----GTA----AAATACTC-ATGGCAGGCGATATTG-AAGACTTT--GTCTTCTtattc
gi|19 : tTTTCCAGA-CACAA-CTTCAA--AACCTA---GTGGTC-TAA------T
gi|2 : gTCCCTTTCCGGAGCACAA-CTACAA--NNNNNN---NNNNNN-NNN------NNNNNNNNNN-NN-NNNNNNNNNNNNNNNNNGATT-----G-------A------AGTTTAAAAACTCAGAAC--ATC---TAA----ATG----AAATACCCCATGACGGAGGATATTG-ATAACTAC--ATTTTCTT-GTg
gi|3 : TCTCCTTTTCCAGTACAGAA-TTTCAA--AATCTT---GTGATC-TAG------TAGTGGCTTTACT-CTG----TGTGT-------TT-----T-------A------AGTTTCATGATTCAGAA---GTCGGATAATCGTGTA----AAATGCCCCATTGCGGGGGATATTG-ACAACCAC--CTCTTCattcagttagtgtataatttagctaccacaaagctgaaatgctc
gi|4 : ttctgttactatggaaacaattagcacatatattatatcgaaagaagCCCGTTCCAGAAAATA----CCAAGAAACTT-----TGCTCACAG------TATTGTCTTA-TG-CT----ACGAGT-------TTCTTTTT-------A------AGTCTCAGAACGCAAAAC--A-------A----GTA----AAATACTCAATGGTGGGGGATATTG-TCGACTAT--GTATTTTT-GTCA
gi|5 : cccattgaaccaaatagccacaattatgatattctaataagtttaaaTTCCGTTCCGGAGCAAAAACTCCAA--AATCTA---GATATC-TAG------TAGAACCTTT-TA-CTACAAATGGGT-------TT-----TCACCTGCA------GGTTTCTGAACTC-GAAC----------A----GTA----AAATA-TAAATGGCAGGGACAATTGAAGGACAAT--GTCGTTTT-GTTt
gi|6 : ttcttgcttcagaaacaataaccaaatttatgATTCTCCATTACTGGAGTGTAA-TTCAAA--AACCTA---GTACTT-TAGTACAGATAGAGCCTTG-TG-CTAAGTGTGAGT-------TT-----TCATTTTCA------AGTTTCAGAACTCAAAAC--A-----TAA----G---------------ATGTTGAAGGATATTG-GTGACTATAGGTCTTCCT-GTTgctttaata
gi|7 : tggaaacaattagtaaaattgatgaaTTCGGAATACAA-CTCTAA--AAC-TAAAAGTGGTC-TTG------AAGTGCCTTT-TT-CTGTGAATGAGT-------TT-----T-------A------A-------AACTT--GAC--ATC---TAA----GAA----CAATATCCGATGGCGGGGAATATTG-ATGACTAC--ATgaattttgat
gi|8 : actttgttacaagggaaacaactagtaaaatttataaaaaaaaaattccgATTCTTCCTTTCTGTTGCACAA-CTCCAA--GAGCTA---TTGGT--TAA------AAGTGCTTTT-TTGCTGTGAAGTAGT-------TT-----C-------A------GTTTTCA-AAGTCAGAAC--ATC---TTA----GTA----AACTACTCCATTGCGGGGGATATTG-ACAACTGC--GTCTTCCT-GTTA
gi|9 : ATTTTCTGTTTTCGGAGCACAA-TTC-----AA------------------------AGTGCCTTT-TG-GTATGAGGGAGT-------TT-----T-------ATTTTCAAGTATCAGACCTCAAAAC--ATG---AGA----GTA----AAATACTACATG--AAGGAATACTG-A
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TGCAAAAACTACCAAATTCTCTCTATCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAA