lowQualScore : 11111 1 1 1 1 1 22222 1 1 3
lowQualScore : 11111 3 1 555 3 1 44 1 1 333 1 1 888888888888 1 1 5 333 77777777 5 55555 33 2 8 44444 1 2 5 2 4 6 1 4 2 2
lowQualScore : ..... . . ... . . .. . . ... . . ............ . . . ... ........ . ..... .. . . ..... . . . . . . . . . .
lowQualScore : 22222 9 8 000 4 8 33 7 7 000 7 7 999999999999 7 7 7 555 66666666 0 66666 11 2 8 66666 0 4 0 4 5 1 6 2 1 1
consensus : TTTTTTTTAAAAA---TCATTTACCTACGTTTT-AAA---CAAAAA-A--GGCCCATT-AACTGTGCAACATGCATGTCGT-CAGT---T-GGGTCCGAAATTTGGTAGATA-ATACATC------------TAT-AAAAA-GACAAGAATTATTA---ATAAAATCCGTCATGTCGCATGAACTATTTAACAAATAAAA--------TATAACCATTCCCTATTTGTAAATGATAG-----TAGGGATATTGAT--AA-AAAAA--TT-AATACTAAACTTCTCAAGTTTACAAA-TTACCCCACCCATCACCAGAAATCAAGCATTAATTAAAGTATACAAACACGCACAAAACGATAAAAAGTAATTTTATT-TT-ATCAT-GAGAAACTTAT
Reference ( gi|4 ) : TTTTTTTTAAAAA---TCAATTACCTACGTTTT-AAA---CGAAAA-A--GGCCCATT-AACTGTGCAACATGCATGTCGT-CAGT---T-GGGTCCGAAATTTGGTAGATA-ATACATC------------TAT-AAAAA-GACAAGAATTATAA---ATAAAATCCGTCATGTCGCATGAACTATTTAACAAATAAAA--------TATAACCATTGCCTATTTGTAAATGATAG-----TAGGGATATTGAT--AA-ATAAA--TA-AATACTAAACTTCTCAAGTTTACAAA-TTACCCCACCCATCACCAGAAATGAAGCATTAATTAAAGTATACAGACACGCACAAAACGATAAAAAGGAATTTCA-T-TT-ATCAT-GAGAAACTTAT
gi|1 : TTTTTGTTAAAAAAA-TCAGTTACCTTCGTTTT-AAA---CAAAAA-A--GGCCCATT-AACTGTGCAACATGCATGTCGT-CAGT---T-TGGTCCGAAATTTTGTAGATA-ATACATC------------TAT-AAAAA-GACAAGAATTATTA---ATAAAATCCGTCATGTCACATGAACTATTTAACAAATAAAA--------TATAACCATTCCCTATTTGTAAATGATAG-----TAGGGATATTGAT--AA-AAAAA--AATAATACTAAACTTCTCATGTTTACAAA-TTACCCCACCCATCACCAGAAATCAAGCATTAATTATAGTATACAAACACGCACAAAACGATAAAAAATAATTTAA-T-TT-ATCAT-GAGAAACTTA
gi|3 : tTTTTTTTAAAAAA---TCATTTACCTACGTTTT-AAA---CAAAAA-A--GGCCCATT-AACTGTGCAACATGCATGTCTT-CTGT---T-TGGTCCGAAATGTGGTAGATA-ATACATC------------TAT-AAAAA-GACAAGAATTATTA---ATAAAGTCCGTCATGTCGCATGAACTATTTAACAAACAAAA--------TATAACCATTCCCTATTTGTAAATGATAG-----TAGGGATATTGAT--AA-AAAAA--TT-AATAGTTAACTTCTCTAGTTTACAAA-TTACCCCACCAATCACCAGAAATCAAGCATTTATTAAAGTATACAAACACGCACAAAACGATAAAAAGTAATTTTATT-TT-ATCAT-GAGAAACTTAT
gi|7 : TTTTTTTTAAA-----TCATTTACCTACGTTTT-AAA---CAAAAA-A--G-CCCATT-AACTGTGCAACATGCATGTCGT-CAGT---T-GGGTCCGAAATTTGGTAGATA-ATACATC------------TAT-AAAAA-GACAAGAATTATTA---ACAAAATCCGTCATGTCGCATGAACTATAAAACAAATAAAT--------TATAACCATTCCCTATTTGTAAATGATAG-----CAGGGATATTGAT--AACAAAAA--TT-AATACAAAACTTCTCAACTTTAAAAA-TTACCCCACCCATCACCAGAAATCAAGCATTAATTAAAGTATACAAACACGCACAAAATGATAAAAAGCAATTTTATT-TT-ATCAT-GAGAAACTTA
gi|10 : TTTTGTTTTAAAA---TCATTTACCTACGTTTT-AAA---C-AAAA-A--GGCCCATT-AACTGTGCAATATGCATGTCGT-CAGT---T-GGGTCCGAAATTTGGTAGATA-ATACATC------------TAT-AAAAA-GACAAGAATTATTA---ATAAAATCTGTCGTGTCACATGAACAATTAAACTAATAAAA--------TATAACCATTCCCTATTTGTAAATGATTG-----TAGGGATATTGATTAAA-AAAAA--T--AATACAAAACTTCTCAAGTTTACAAA-TTACCCCACCCATCAACAGAAATCAAGCATTAATTAAAGTATACAATCAAGCACAAAACGAT-------AATTTTATT-TT-ACTAT-GAGAAACTTA
gi|14 : TTTATCTTTAAAA---TCATTTACCTACGTTTT-AAA---C-AAAA-A--GGCCCATT-AACTGTGCAACATGCATGTCGT-CAGT---T-GGGTCCGAAATTTGGTAGATA-ACACATC------------TAT-AAAAA-GACAAGAATTATTA---ATAAAATCCG------------AACTATAAAACAAATAAAA--------TATAACCATTCCCTATTTGTAAACGATAG-----TAGGGATAATGTT--AA-AAAAA--TT-AATAGTATACTTCTCAAGTTTACAAAATTACCCCACCCATCACCAGAAATCAAGCATTAATTAAAGTATACAAACACGCACAAAACGATACAAAGTAATTTTATT-TT-ATCAT-GAGAAACTTA
gi|18 : TTTTTTTTAT------TCATTTACCTGTTTTTT-TAA------AAA-ATTGGCCCATT-TACTGTGCAACAGGC
gi|11 : atgggtaaattttagatgctaacacattacgccctaaaacagttgttttgagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtttaatttagaatttaacacatatatatataTTTTTTTAAAAA---TCATTTACCTACGTTTT-AAA---CAAAAA-A--GGCCCATT-AACTGTGCAACATGCATGTCGT-CAGT---C-GGGTCCAAAATTTGGTAGATA-ATACATC------------TAT-AAAAA-GACAAGAACTATTA---ATAAAATCCGTCATGTC-CTTGAGCTATTTAACAAATAAAA--------TATAACCATTCCCTATTTGTAAATGATAG-----TAGGGATATTGAT--AA-AAAAA--TT-AAT-----ACTTATCAAGTTTACAAA-TTACCCCACCCATCACCAGAAATCAAGCATTAATTAAAGTATACAAACTCGCACAAAACGTTAAAAAGTAATTTTATT-TT-ATCAT-GAGAAACTT
gi|6 : TTTTTTTAAAAA---TCATTTACCTACGTTTT-AAA---CAAAAA-A--GGCCCATT-AACTTTGCAACATGCATGTCGT-CAGT---T-TGGTCCGAAATTTGGTCGATA-ATACATC------------TGT-AAAAA-GACC-GAATTATTG---ATAAAATCCGTCATATCGCATGAACTATTTAACAAATAAAA--------TATAACCATTCCCTGTTTGTAAATGATAG-----AAGGGATATTGAT--AA-TAAAA--CT-AATACTAAACTTCTCAAGTTTACAAA-TTACCCCACTCATCACCAGAAATCAAGCATTAATTGAAGTATACAGACACGCACAAAACGATAAAAAGTAATGTTATT-TT-ATCATAAAGAAACTTA
gi|2 : TTTTTTTAAAAA---TCATTTACCTTCGTTTT-AAA---CAAGAA-A--GGCCCATT-AACTGTGCAACATGAAAGTCGT-CAGT---T-GGGTCCGAAATTTGGAAGATA-ATACATT------------TAT-AAAAA-GACAA-AATTATTATTTATAAAATCCGTCATGTCGCATGAACTTTTTAACAAATAAAA--------TATAACCATTCCCTATTTGTAAATGATAG-----TAGGGATATTGAT--AA-AAAAA--AATAATATTAAACTTCTCAAGTATATAAA-TTACCCCACCCATCACCAGAAATCAAGCATTAATTAAAGTATACAAACACGCACAAAACGATAAAAAGTAAGTTTATT-TT-ATCAT-GAGAAACTT
gi|12 : TTTTTTTAAAGG------------TACGTTTT-AAA---C-AAAA-A--GGCCCATT-AACTGTGCAACATGCATGTCGC-CAGT---T-GGGTCCGAAATTTGGTAGATA-ATACATC------------TAT-AAAAA-GACAAGAATTATTA---ATAAAATCCGTCATGTCGCATGAAATAAAAAACAAATAAAA--------TATAACCATTCCCTATTTGTAAATGATAG-----TAGGGATATTGAT--AA-A-AAA--TT-AATACAAAACTTCTCAAGTTTACAAA-TTATCCCACCCATCACCAGAAATCAAGCATTAATTAAAGTATACAAACATGCACAAAACGATAAAAAGTAATTTTATT-TT-ATCAT-GAGAAACTTAg
gi|12 : TCTTTTTATAGA---TGTATTATCTAC----C-AAATTTCG--------GACCCA----ACTG-GCGACATGCATGTTGCACAGTTAAT-GGGCCT----TTTTGTTTAAA-ACGTACC------------TTT-AAAAA-AA
gi|5 : TTTTTTTAAA-----TCATGTACCTATGTTTT-AAA---CAAAAA-A--GGACCATTTAACTGTGCAACATGCATGTCGT-TAGT---T-TGGTCCGAAATTTGGTCGATA-ATACAAC------------TATAAAAAA-GAC-CGAATTATTG---ATAAAATCAGTCATGTCGCATGAACTATTTAACTAATAAAA--------TATAACCATTCCCTAATTGTAAATGATAG-----TAGGGATATCGAT--AA-AAAAAAGTT-AATAATAAACTTCTCAAGTTTACAAT-TTACCTCATCCATCACCAGAAATCAAGTATTAATTAAAGTATACAGACACGCACAAAACGATAAAAAGTAATTTAATT-TT-ATCAT-GAGAAACTTcaagaattattaataaaatccgtcatgtcgcatgaaataaaaaacaaataaaatataaccattccctatttgtaaatgatagtagggatattgataaaaaattaatacaaaacttctcaagtttacaaattatcccacccatcaccagaaatcaagcattaattaaagtatacaaacatgcacaaaacgataaaaagtaattttattttatcatgagaaactta
gi|22 : TTTTTTTAAAA----TCAATTACCTACTTTTT-AAAC--CAAAAA-A--GGTCGATT-TACAGTGCAGCATGTATGTTGT-CAGT---TGGGGTCCAAAATTTGGTAGATA-AAACATCATTCTATATATATAT-ATAAA-GAC-AGAATTAATA---ATAAAATCCGTCATGTCGCATGAACTATTTAACAA--AAAA--------TA
gi|26 : TTTTTTTAAAAA---TCATTTACCTACGTTTT-AAA---CAAAAA-A--GGCCCATT-AACTGTACAACATGCACGT-GA-CAA----------CAGAAATTT-----AT--ATATATC------------TTT-AAAAT-CATGAGAAatgat
gi|9 : TTTTTTAAAAA---TCGTTTACCTACGTTTT-AAA---C-AAAA-A--GGCCCATT-AACTGTGCAACATGCATGTCGT-CAGT---T-GGGTCCGAAATTTGGTAGATT-ATACATC------------TAT-AAAAA-GACACGAATTTTAA----TAAAATCCGTCATGTCGCATGAACTATTTAACAAATGAAA--------TATAACCATTCCCTATTTGTAAATGATAG-----AAGGGATATTGAT--AA-AAAAA--TA-A-TACTAAACTTCTCAAATTTACAAA-TTACCCCACCCATCACCAGAAATCAAGCATTAATTAAAGTATACAGACAAGCACAAAACGATAAAAAGTAATTTCA-TATT-ATCAT-GAGAAACTTAactta
gi|15 : TTTTTTAAAAA---TCATTTACCTACATTT--AAA---CAAAAA-A--TGCCAATT-AACTGTGCAACATGCATGTCGT-CAGT---T-GGGTCCAAAATTTGGTAGATA-ATACATC------------TAT-AAAAA-GACAAAAATTATTA---ATAAAATCCGTCATGTCGCATGAACTAGTTAACAAATAAAA--------TATAACCATTCCCTATTTGTAAATGATAGTAGCCTAGGGATATTGA---------------------TAGACTCCTCAAGTTTAACAA-TTACCCCAACCATCACCAGAAATCAAGCATTAATTAAAGTATACAAACACGCACAAAACGAT-AAAAGTAATTTTATT-TT-ATCAT-GAAAAA
gi|24 : TTTTTTAAA-----TCATTTACCTACTTTTTTAAA---C-AAAA-A--GGCCCATT-AACTGTGCAACATGCATTTCGT-CAGT---T-GGGTCCTAAATTTGGTAGATA-ATACATC------------TAT-AAAAA-GACAAGAATTATTA---ATAAAATCCGTCATGTCG
gi|8 : TTTTAAAAAAAATGATTTACCTACGTTTC-AAA---CAAAAAAA--GGCCCATT-AACTGTGCAACATGCATGTCGT-CAGT---T-GGGTCCGAAATTTGGTAGGTA-ATACATC------------TAT-AAAAA-GACAAGAATTATTA---ATAAAATCCGTCATGTCGCATGAACTATTTAACAAATAAAA--------TATAACCATTCCCTATGTGTAAATGATAG-----TAGGGATATTGAT--AA-A-AAA--T--AATACTAAACTTCTTAAGTGTACAAA-TTACCCAACCCATCACCAGAAATCAAGCATTAATTAAAGTATACAAACACGCACAAAACGATAAAAGTAATTTTTATT-TT-ATCAT-GAGAAACTTA
gi|13 : TTTTAAA-----TCATTTACCTACGTTCT-AAA---CAAAAA-AT-GGCCCATT-TACTGGGCAACATGCATGTCAT-CAGT---T-TGGTCC-AGATC----AGATA-ATACATC------------TAT-AAAAAAGACA-GAATTATTA---ATAAAACCCGTCATGTCGCATGAA-TATTTAACAAATAAGACTGTCTGATATAACCATTCCCTATTTGTGAATGACAA-----TAGAGATAGTGAT------CAAACTTT-AATACTAAA--------GTTTACAAA-TTACTCCACCCATCACCAGAAATCCAGCATTAATTAAAGTATACCGACAAGCATAAAACGATAAATAGTAATTTTATT-TT-AACAT-GAGAAACTTA
gi|19 : TTTTAAAAAAA-GCATTTGCCTACGTTTT-AAA---CAAAAA-A--GGCCCATT-AACTGTGCAACATCCATGTCGT-CAGT---T-GGGTCCGAAATTTGGTAGATATTTACATC------------TAT-AAAAA-GAC-AGAATTATTA---ATAAAATCCGTCATGCCGCATGAACTATTTAACAAATTGAA--------TATAACCATTCCCTATTTGTAAATGATAG-----TAGGGATATTAAT--AA-AAAAA--AT-AATATTAAACTTCTCAAGT
gi|27 : AAAA---TCATTTACCTACGTTTT-AAA---CAAAAA-A--GGCCCATT-AACTGTGCAACATGCATGTCGT-CAGT---T-GGGTCAGAAATTTGGT--ATA-ATACATT------------AAT-AAAAA-GACAAGAAT
gi|25 : TTACCTACGTTTT-AAA---CAAAAA-A--GGTCCATT-AACTGTGCAACATGCATGTCGT-CAGT---T-GGGTCCGAAATTTGGTAGATA-ATACATC------------TAT-AAAGA-GACAAGAATTATTA---ATAAAATCCGTCATGTCGCA
gi|16 : tCCATT-AACTGTGCAACATGCATATCAT-CAGT---T-GGGTCCGAAATTTGGTAGATA-ATACATC------------TAT-AAAAA-GACAAGAATTATTA---ATAAAATCCGTCATGTCGCATGAACTATAAAAAAAATAAAA--------TATAACCATTCCCTATTTGTAAATGATAG-----TAGGGATATTGAT--AT-AAAAA--TT-AATACAAAACTTCTCAAGTTTACAAA-TTATCCCACCCATCACCAGAAATCAAGCATTAATTAAAGTATACAAACACGCACAAAACGATAAAAAGTAATTTTATT-TT-ATCAT-GAGAAACTTA
gi|17 : ATGTCGC-CAGT---T-GGGTCCGAAATTTGGTAGATA-ATACATC------------TAT-AATAA-GACAAGAATTATTA---ATAAAATTCGTCATGTTGCATGAACTATAAAACAAATAAAA--------TATAACCATTCCCTATTTGTAAATGATAG-----TAGGGATATTGAT--AA-AAAAA--TT-ATTACAAAACTTCTCATGTTTACAAA-TTACCCCACCCATCACCAGAAATCAAGCATTAATTAAAGTATACAAACACGCACAAAACGATAAAAAGTAATTTTATT-TT-ATCAT-GAGAAA
gi|23 : AAAT--------TATAACCATTCCCTATTTGTAAATGATAG-----TAGGGATATTGAT--AA-AAAAA--AT-AATACAAAACTTCTCAAGTTTACAAA-TTACCCCACCCATCACCATAAATCAAGCATTAATTAAAGTATACAAACACGCACAAAACGATTAAAAGTTATTTTA-TCTT-ATCAT-GAGAAACTTAT
gi|28 : ACCCCACTCATCACCAGAAATCAAGCATTAATTAAAGTATACAAACACGCACAAAACGATAAAAAATAATTTTATT-TT-ATCAT-GAGAAACTT
gi|29 : AAAAAGTAATTTTA-T-TTTATCAT-GAGAAACTTATg
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|20 ): GTTAATTTTAAATGCTAACACATTACGCCCCAAAACAGGTGTTTTAGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCTGAAATTAGAAATAAACTTATATTCTAATTTTTAAAATCATTTACCTATTTTTATTTTTAAATTTTCCCATTAACTGTGCAACAGGAA
Unaligned ( gi|21 ): TGGGTAAATTTTAGATGCTAACACATTACGCCCTAAAACAGTTGTTTTGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTGTAATTTAGACTTTAACACATATATATATTTTTTTATTCATTTACCTGTTTTTTTTTTCAAAATTGGCCCATTTATG
Alignments
lowQualScore : 2 888 1 1 1 44 1 1 1 888888888888 1 1 333 77777777 55555 2 2 2 6666 0 2 2 2
lowQualScore : . ... . . . .. . . . ............ . . ... ........ ..... . . . .... . . . .
lowQualScore : 2 666 8 8 8 33 7 7 7 999999999999 7 7 333 22222222 33333 1 1 1 2222 5 2 0 0
consensus : TTTTTTTTAAAAA---TCATTTACCTAC-GTTTTAAA-CAAAA-AA--GGCCCATT-AACTGTGCAACATGCATGTCGTCAGTT-GGGTCCGAAATTTGGTAGATA-ATACATC------------TAT-AAAAA-GACAAGAATTATTA---ATAAAATCCGTCATGTCGCATGAACTATTTAACAAATAAAA--------TATAACCATTCCCTATTTGTAAATGATAG-----TAGGGATATTGA-T-AA-AAAAA--T-TAATACTAAACTTCTCAAGTTTACAAA-TTACCCCACCCATCACCAGAAATCAAGCATTAATTAAAGTATACAAACACGCACAAAACGATAAAAAGTAA-TTTTATTTTATCAT-GAGAAACTTAT
Reference ( family-46 ) : TTTTTTTTAAAAA---TCATTTACCTAC-GTTTTAAA-CAAAA-AA--GGCCCATT-AACTGTGCAACATGCATGTCGTCAGTT-GGGTCCGAAATTTGGTAGATA-ATACATC------------TAT-AAAAA-GACAAGAATTATTA---ATAAAATCCGTCATGTCGCATGAACTATTTAACAAATAAAA--------TATAACCATTCCCTATTTGTAAATGATAG-----TAGGGATATTGA-T-AA-AAAAA--T-TAATACTAAACTTCTCAAGTTTACAAA-TTACCCCACCCATCACCAGAAATCAAGCATTAATTAAAGTATACAAACACGCACAAAACGATAAAAAGTAA-TTTTATTTTATCAT-GAGAAACTTAT
gi|1 : TTTTTGTTAAAAAAA-TCAGTTACCTTC-GTTTTAAA-CAAAA-AA--GGCCCATT-AACTGTGCAACATGCATGTCGTCAGTT-TGGTCCGAAATTTTGTAGATA-ATACATC------------TAT-AAAAA-GACAAGAATTATTA---ATAAAATCCGTCATGTCACATGAACTATTTAACAAATAAAA--------TATAACCATTCCCTATTTGTAAATGATAG-----TAGGGATATTGA-TAAA-AAAAA--A-TAATACTAAACTTCTCATGTTTACAAA-TTACCCCACCCATCACCAGAAATCAAGCATTAATTATAGTATACAAACACGCACAAAACGATAAAAAATAA--TTTAATTTATCAT-GAGAAACTTA
gi|10 : tTTTTGTTTTAAAA---TCATTTACCTAC-GTTTTAAA-CAAAA--A--GGCCCATT-AACTGTGCAATATGCATGTCGTCAGTT-GGGTCCGAAATTTGGTAGATA-ATACATC------------TAT-AAAAA-GACAAGAATTATTA---ATAAAATCTGTCGTGTCACATGAACAATTAAACTAATAAAA--------TATAACCATTCCCTATTTGTAAATGATTG-----TAGGGATATTGATT-AA-AAAAA--A-TAATACAAAACTTCTCAAGTTTACAAA-TTACCCCACCCATCAACAGAAATCAAGCATTAATTAAAGTATACAATCAAGCACAAAACGA-------TAA-TTTTATTTTACTAT-GAGAAACTTA
gi|11 : TTTTTTTAAAAA---TCATTTACCTAC-GTTTTAAA-CAAAA-AA--GGCCCATT-AACTGTGCAACATGCATGTCGTCAGTC-GGGTCCAAAATTTGGTAGATA-ATACATC------------TAT-AAAAA-GACAAGAACTATTA---ATAAAATCCGTCATGTC-CTTGAGCTATTTAACAAATAAAA--------TATAACCATTCCCTATTTGTAAATGATAG-----TAGGGATATTGA-T-AA-AAAAA--T-TAAT-----ACTTATCAAGTTTACAAA-TTACCCCACCCATCACCAGAAATCAAGCATTAATTAAAGTATACAAACTCGCACAAAACGTTAAAAAGTAA-TTTTATTTTATCAT-GAGAAACTT
gi|12 : TTTTTTTAAAGG------------TAC-GTTTTAAA-C-AAA-AA--GGCCCATT-AACTGTGCAACATGCATGTCGCCAGTT-GGGTCCGAAATTTGGTAGATA-ATACATC------------TAT-AAAAA-GACAAGAATTATTA---ATAAAATCCGTCATGTCGCATGAAATAAAAAACAAATAAAA--------TATAACCATTCCCTATTTGTAAATGATAG-----TAGGGATATTGA-T--A-AAAAA--T-TAATACAAAACTTCTCAAGTTTACAAA-TTATCCCACCCATCACCAGAAATCAAGCATTAATTAAAGTATACAAACATGCACAAAACGATAAAAAGTAA-TTTTATTTTATCAT-GAGAAACTTA
gi|13 : TTTTAAA-----TCATTTACCTAC-GTTCTAAA-CAAAA-AAT-GGCCCATT-TACTGGGCAACATGCATGTCATCAGTT-TGGTCC-AGATC----AGATA-ATACATC------------TAT-AAAAAAGACA-GAATTATTA---ATAAAACCCGTCATGTCGCATGAA-TATTTAACAAATAAGACTGTCTGATATAACCATTCCCTATTTGTGAATGACAA-----TAGAGATAGTGA-T-CA-AACT---T-TAATACTAAA--------GTTTACAAA-TTACTCCACCCATCACCAGAAATCCAGCATTAATTAAAGTATACCGACAAGCATAAAACGATAAATAGTAA-TTTTATTTTAACAT-GAGAAACTTA
gi|14 : TTTATCTTTAAAA---TCATTTACCTAC-GTTTTAAA-CAAAA-A---GGCCCATT-AACTGTGCAACATGCATGTCGTCAGTT-GGGTCCGAAATTTGGTAGATA-ACACATC------------TAT-AAAAA-GACAAGAATTATTA---ATAAAATCCG------------AACTATAAAACAAATAAAA--------TATAACCATTCCCTATTTGTAAACGATAG-----TAGGGATAATGT-T-AA-AAAAA--T-TAATAGTATACTTCTCAAGTTTACAAAATTACCCCACCCATCACCAGAAATCAAGCATTAATTAAAGTATACAAACACGCACAAAACGATACAAAGTAA-TTTTATTTTATCAT-GAGAAACTTA
gi|15 : TTTTTTAAAAA---TCATTTACCTAC-ATTT-AAA-CAAAA-AA--TGCCAATT-AACTGTGCAACATGCATGTCGTCAGTT-GGGTCCAAAATTTGGTAGATA-ATACATC------------TAT-AAAAA-GACAAAAATTATTA---ATAAAATCCGTCATGTCGCATGAACTAGTTAACAAATAAAA--------TATAACCATTCCCTATTTGTAAATGATAGTAGCCTAGGGATATTGA---------------------TAGACTCCTCAAGTTTAACAA-TTACCCCAACCATCACCAGAAATCAAGCATTAATTAAAGTATACAAACACGCACAAAACGAT-AAAAGTAA-TTTTATTTTATCAT-GAAAAA
gi|16 : CCATT-AACTGTGCAACATGCATATCATCAGTT-GGGTCCGAAATTTGGTAGATA-ATACATC------------TAT-AAAAA-GACAAGAATTATTA---ATAAAATCCGTCATGTCGCATGAACTATAAAAAAAATAAAA--------TATAACCATTCCCTATTTGTAAATGATAG-----TAGGGATATTGA-T-AT-AAAAA--T-TAATACAAAACTTCTCAAGTTTACAAA-TTATCCCACCCATCACCAGAAATCAAGCATTAATTAAAGTATACAAACACGCACAAAACGATAAAAAGTAA-TTTTATTTTATCAT-GAGAAACTTA
gi|17 : ATGTCGCCAGTT-GGGTCCGAAATTTGGTAGATA-ATACATC------------TAT-AATAA-GACAAGAATTATTA---ATAAAATTCGTCATGTTGCATGAACTATAAAACAAATAAAA--------TATAACCATTCCCTATTTGTAAATGATAG-----TAGGGATATTGA-T-AA-AAAAA--T-TATTACAAAACTTCTCATGTTTACAAA-TTACCCCACCCATCACCAGAAATCAAGCATTAATTAAAGTATACAAACACGCACAAAACGATAAAAAGTAA-TTTTATTTTATCAT-GAGAAA
gi|18 : TTTTTTTTAT------TCATTTACCTGT-TTTTT----TAAAA-AATTGGCCCATT-TACTGTGCAACAGGC
gi|19 : atgggtaaattttagatgctaacacattacgccctaaaacagttgttttgagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtttaatttagaatttaacacatatatatataTTTTAAAAAAA-GCATTTGCCTAC-GTTTTAAA-CAAAA-AA--GGCCCATT-AACTGTGCAACATCCATGTCGTCAGTT-GGGTCCGAAATTTGGTAGATATTTACATC------------TAT-AAAAA-GAC-AGAATTATTA---ATAAAATCCGTCATGCCGCATGAACTATTTAACAAATTGAA--------TATAACCATTCCCTATTTGTAAATGATAG-----TAGGGATATTAA-T-AA-AAAAA--A-TAATATTAAACTTCTCAAGT
gi|2 : TTTTTTTAAAAA---TCATTTACCTTC-GTTTTAAA-CAAGA-AA--GGCCCATT-AACTGTGCAACATGAAAGTCGTCAGTT-GGGTCCGAAATTTGGAAGATA-ATACATT------------TAT-AAAAA-GACAA-AATTATTATTTATAAAATCCGTCATGTCGCATGAACTTTTTAACAAATAAAA--------TATAACCATTCCCTATTTGTAAATGATAG-----TAGGGATATTGA-T-AA-AAAAA--AATAATATTAAACTTCTCAAGTATATAAA-TTACCCCACCCATCACCAGAAATCAAGCATTAATTAAAGTATACAAACACGCACAAAACGATAAAAAGTAA-GTTTATTTTATCAT-GAGAAACTT
gi|22 : TTTTTTT-AAAA---TCAATTACCTAC-TTTTTAAACCAAAA-AA--GGTCGATT-TACAGTGCAGCATGTATGTTGTCAGTTGGGGTCCAAAATTTGGTAGATA-AAACATCATTCTATATATATAT-ATAAA-GAC-AGAATTAATA---ATAAAATCCGTCATGTCGCATGAACTATTTAACAA--AAAA--------TAg
gi|23 : AAAT--------TATAACCATTCCCTATTTGTAAATGATAG-----TAGGGATATTGA-T-AA-AAAAA--A-TAATACAAAACTTCTCAAGTTTACAAA-TTACCCCACCCATCACCATAAATCAAGCATTAATTAAAGTATACAAACACGCACAAAACGATTAAAAGTTA-TTTTATCTTATCAT-GAGAAACTTATatgat
gi|24 : TTTTTTAAA-----TCATTTACCTACTTTTTTAAA-C-AAA-AA--GGCCCATT-AACTGTGCAACATGCATTTCGTCAGTT-GGGTCCTAAATTTGGTAGATA-ATACATC------------TAT-AAAAA-GACAAGAATTATTA---ATAAAATCCGTCATGTCG
gi|25 : TTTACCTAC-GTTTTAAA-CAAAA-AA--GGTCCATT-AACTGTGCAACATGCATGTCGTCAGTT-GGGTCCGAAATTTGGTAGATA-ATACATC------------TAT-AAAGA-GACAAGAATTATTA---ATAAAATCCGTCATGTCGCA
gi|26 : TTTTTTTAAAAA---TCATTTACCTAC-GTTTTAAA-CAAAA-AA--GGCCCATT-AACTGTACAACATGCACGT-GACAA-------CAGAAATTT-----AT--ATATATC------------TTT-AAAAT-CATGAGAA
gi|27 : AAAA---TCATTTACCTAC-GTTTTAAA-CAAAA-AA--GGCCCATT-AACTGTGCAACATGCATGTCGTCAGTT-GGGTCAGAAATTTGGT--ATA-ATACATT------------AAT-AAAAA-GACAAGAATactta
gi|28 : ACCCCACTCATCACCAGAAATCAAGCATTAATTAAAGTATACAAACACGCACAAAACGATAAAAAATAA-TTTTATTTTATCAT-GAGAAACTT
gi|29 : AAAAAGTAA-TTTTATTTTATCAT-GAGAAACTTATg
gi|3 : TTTTTTTAAAAAA---TCATTTACCTAC-GTTTTAAA-CAAAA-AA--GGCCCATT-AACTGTGCAACATGCATGTCTTCTGTT-TGGTCCGAAATGTGGTAGATA-ATACATC------------TAT-AAAAA-GACAAGAATTATTA---ATAAAGTCCGTCATGTCGCATGAACTATTTAACAAACAAAA--------TATAACCATTCCCTATTTGTAAATGATAG-----TAGGGATATTGA-T-AA-AAAAA--T-TAATAGTTAACTTCTCTAGTTTACAAA-TTACCCCACCAATCACCAGAAATCAAGCATTTATTAAAGTATACAAACACGCACAAAACGATAAAAAGTAA-TTTTATTTTATCAT-GAGAAACTTATt
gi|4 : TTTTTTTTAAAAA---TCAATTACCTAC-GTTTTAAA-CGAAA-AA--GGCCCATT-AACTGTGCAACATGCATGTCGTCAGTT-GGGTCCGAAATTTGGTAGATA-ATACATC------------TAT-AAAAA-GACAAGAATTATAA---ATAAAATCCGTCATGTCGCATGAACTATTTAACAAATAAAA--------TATAACCATTGCCTATTTGTAAATGATAG-----TAGGGATATTGA-T-AA-ATAAA--T-AAATACTAAACTTCTCAAGTTTACAAA-TTACCCCACCCATCACCAGAAATGAAGCATTAATTAAAGTATACAGACACGCACAAAACGATAAAAAGGAA-TTTCA-TTTATCAT-GAGAAACTTAT
gi|5 : TTTTTTTAAA-----TCATGTACCTAT-GTTTTAAA-CAAAA-AA--GGACCATTTAACTGTGCAACATGCATGTCGTTAGTT-TGGTCCGAAATTTGGTCGATA-ATACAAC------------TATAAAAAA-GAC-CGAATTATTG---ATAAAATCAGTCATGTCGCATGAACTATTTAACTAATAAAA--------TATAACCATTCCCTAATTGTAAATGATAG-----TAGGGATATCGA-T-AA-AAAAAAGT-TAATAATAAACTTCTCAAGTTTACAAT-TTACCTCATCCATCACCAGAAATCAAGTATTAATTAAAGTATACAGACACGCACAAAACGATAAAAAGTAA-TTTAATTTTATCAT-GAGAAACTT
gi|6 : TTTTTTTAAAAA---TCATTTACCTAC-GTTTTAAA-CAAAA-AA--GGCCCATT-AACTTTGCAACATGCATGTCGTCAGTT-TGGTCCGAAATTTGGTCGATA-ATACATC------------TGT-AAAAA-GACC-GAATTATTG---ATAAAATCCGTCATATCGCATGAACTATTTAACAAATAAAA--------TATAACCATTCCCTGTTTGTAAATGATAG-----AAGGGATATTGA-T-AA-TAAAA--C-TAATACTAAACTTCTCAAGTTTACAAA-TTACCCCACTCATCACCAGAAATCAAGCATTAATTGAAGTATACAGACACGCACAAAACGATAAAAAGTAA-TGTTATTTTATCATAAAGAAACTTA
gi|7 : TTTTTTTTAAA-----TCATTTACCTAC-GTTTTAAA-CAAAA-AA--G-CCCATT-AACTGTGCAACATGCATGTCGTCAGTT-GGGTCCGAAATTTGGTAGATA-ATACATC------------TAT-AAAAA-GACAAGAATTATTA---ACAAAATCCGTCATGTCGCATGAACTATAAAACAAATAAAT--------TATAACCATTCCCTATTTGTAAATGATAG-----CAGGGATATTGA-T-AACAAAAA--T-TAATACAAAACTTCTCAACTTTAAAAA-TTACCCCACCCATCACCAGAAATCAAGCATTAATTAAAGTATACAAACACGCACAAAATGATAAAAAGCAA-TTTTATTTTATCAT-GAGAAACTTA
gi|8 : TTTTAAAAAAAATGATTTACCTAC-GTTTCAAA-CAAAAAAA--GGCCCATT-AACTGTGCAACATGCATGTCGTCAGTT-GGGTCCGAAATTTGGTAGGTA-ATACATC------------TAT-AAAAA-GACAAGAATTATTA---ATAAAATCCGTCATGTCGCATGAACTATTTAACAAATAAAA--------TATAACCATTCCCTATGTGTAAATGATAG-----TAGGGATATTGA-T-AA-AAAA-----TAATACTAAACTTCTTAAGTGTACAAA-TTACCCAACCCATCACCAGAAATCAAGCATTAATTAAAGTATACAAACACGCACAAAACGAT-AAAAGTAATTTTTATTTTATCAT-GAGAAACTTA
gi|9 : TTTTTTAAAAA---TCGTTTACCTAC-GTTTTAAA-CAAAA-A---GGCCCATT-AACTGTGCAACATGCATGTCGTCAGTT-GGGTCCGAAATTTGGTAGATT-ATACATC------------TAT-AAAAA-GACACGAATT-TTA---ATAAAATCCGTCATGTCGCATGAACTATTTAACAAATGAAA--------TATAACCATTCCCTATTTGTAAATGATAG-----AAGGGATATTGA-T-AA-AAAAA--T--AATACTAAACTTCTCAAATTTACAAA-TTACCCCACCCATCACCAGAAATCAAGCATTAATTAAAGTATACAGACAAGCACAAAACGATAAAAAGTAA-TTTCATATTATCAT-GAGAAACTTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): GTTAATTTTAAATGCTAACACATTACGCCCCAAAACAGGTGTTTTAGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCTGAAATTAGAAATAAACTTATATTCTAATTTTTAAAATCATTTACCTATTTTTATTTTTAAATTTTCCCATTAACTGTGCAACAGGAA
Unaligned ( gi|21 ): TGGGTAAATTTTAGATGCTAACACATTACGCCCTAAAACAGTTGTTTTGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTGTAATTTAGACTTTAACACATATATATATTTTTTTATTCATTTACCTGTTTTTTTTTTCAAAATTGGCCCATTTATG
Alignments
lowQualScore : 2 888 1 1 1 44 1 1 1 888888888888 1 1 333 77777777 55555 2 2 2 6666 0 2 2 2
lowQualScore : . ... . . . .. . . . ............ . . ... ........ ..... . . . .... . . . .
lowQualScore : 2 666 8 8 8 33 7 7 7 999999999999 7 7 333 22222222 33333 1 1 1 2222 5 2 0 0
consensus : TTTTTTTTAAAAA---TCATTTACCTAC-GTTTTAAA-CAAAA-AA--GGCCCATT-AACTGTGCAACATGCATGTCGTCAGTT-GGGTCCGAAATTTGGTAGATA-ATACATC------------TAT-AAAAA-GACAAGAATTATTA---ATAAAATCCGTCATGTCGCATGAACTATTTAACAAATAAAA--------TATAACCATTCCCTATTTGTAAATGATAG-----TAGGGATATTGA-T-AA-AAAAA--T-TAATACTAAACTTCTCAAGTTTACAAA-TTACCCCACCCATCACCAGAAATCAAGCATTAATTAAAGTATACAAACACGCACAAAACGATAAAAAGTAA-TTTTATTTTATCAT-GAGAAACTTAT
Reference ( family-46 ) : TTTTTTTTAAAAA---TCATTTACCTAC-GTTTTAAA-CAAAA-AA--GGCCCATT-AACTGTGCAACATGCATGTCGTCAGTT-GGGTCCGAAATTTGGTAGATA-ATACATC------------TAT-AAAAA-GACAAGAATTATTA---ATAAAATCCGTCATGTCGCATGAACTATTTAACAAATAAAA--------TATAACCATTCCCTATTTGTAAATGATAG-----TAGGGATATTGA-T-AA-AAAAA--T-TAATACTAAACTTCTCAAGTTTACAAA-TTACCCCACCCATCACCAGAAATCAAGCATTAATTAAAGTATACAAACACGCACAAAACGATAAAAAGTAA-TTTTATTTTATCAT-GAGAAACTTAT
gi|1 : TTTTTGTTAAAAAAA-TCAGTTACCTTC-GTTTTAAA-CAAAA-AA--GGCCCATT-AACTGTGCAACATGCATGTCGTCAGTT-TGGTCCGAAATTTTGTAGATA-ATACATC------------TAT-AAAAA-GACAAGAATTATTA---ATAAAATCCGTCATGTCACATGAACTATTTAACAAATAAAA--------TATAACCATTCCCTATTTGTAAATGATAG-----TAGGGATATTGA-TAAA-AAAAA--A-TAATACTAAACTTCTCATGTTTACAAA-TTACCCCACCCATCACCAGAAATCAAGCATTAATTATAGTATACAAACACGCACAAAACGATAAAAAATAA--TTTAATTTATCAT-GAGAAACTTA
gi|10 : tTTTTGTTTTAAAA---TCATTTACCTAC-GTTTTAAA-CAAAA--A--GGCCCATT-AACTGTGCAATATGCATGTCGTCAGTT-GGGTCCGAAATTTGGTAGATA-ATACATC------------TAT-AAAAA-GACAAGAATTATTA---ATAAAATCTGTCGTGTCACATGAACAATTAAACTAATAAAA--------TATAACCATTCCCTATTTGTAAATGATTG-----TAGGGATATTGATT-AA-AAAAA--A-TAATACAAAACTTCTCAAGTTTACAAA-TTACCCCACCCATCAACAGAAATCAAGCATTAATTAAAGTATACAATCAAGCACAAAACGA-------TAA-TTTTATTTTACTAT-GAGAAACTTA
gi|11 : TTTTTTTAAAAA---TCATTTACCTAC-GTTTTAAA-CAAAA-AA--GGCCCATT-AACTGTGCAACATGCATGTCGTCAGTC-GGGTCCAAAATTTGGTAGATA-ATACATC------------TAT-AAAAA-GACAAGAACTATTA---ATAAAATCCGTCATGTC-CTTGAGCTATTTAACAAATAAAA--------TATAACCATTCCCTATTTGTAAATGATAG-----TAGGGATATTGA-T-AA-AAAAA--T-TAAT-----ACTTATCAAGTTTACAAA-TTACCCCACCCATCACCAGAAATCAAGCATTAATTAAAGTATACAAACTCGCACAAAACGTTAAAAAGTAA-TTTTATTTTATCAT-GAGAAACTT
gi|12 : TTTTTTTAAAGG------------TAC-GTTTTAAA-C-AAA-AA--GGCCCATT-AACTGTGCAACATGCATGTCGCCAGTT-GGGTCCGAAATTTGGTAGATA-ATACATC------------TAT-AAAAA-GACAAGAATTATTA---ATAAAATCCGTCATGTCGCATGAAATAAAAAACAAATAAAA--------TATAACCATTCCCTATTTGTAAATGATAG-----TAGGGATATTGA-T--A-AAAAA--T-TAATACAAAACTTCTCAAGTTTACAAA-TTATCCCACCCATCACCAGAAATCAAGCATTAATTAAAGTATACAAACATGCACAAAACGATAAAAAGTAA-TTTTATTTTATCAT-GAGAAACTTA
gi|13 : TTTTAAA-----TCATTTACCTAC-GTTCTAAA-CAAAA-AAT-GGCCCATT-TACTGGGCAACATGCATGTCATCAGTT-TGGTCC-AGATC----AGATA-ATACATC------------TAT-AAAAAAGACA-GAATTATTA---ATAAAACCCGTCATGTCGCATGAA-TATTTAACAAATAAGACTGTCTGATATAACCATTCCCTATTTGTGAATGACAA-----TAGAGATAGTGA-T-CA-AACT---T-TAATACTAAA--------GTTTACAAA-TTACTCCACCCATCACCAGAAATCCAGCATTAATTAAAGTATACCGACAAGCATAAAACGATAAATAGTAA-TTTTATTTTAACAT-GAGAAACTTA
gi|14 : TTTATCTTTAAAA---TCATTTACCTAC-GTTTTAAA-CAAAA-A---GGCCCATT-AACTGTGCAACATGCATGTCGTCAGTT-GGGTCCGAAATTTGGTAGATA-ACACATC------------TAT-AAAAA-GACAAGAATTATTA---ATAAAATCCG------------AACTATAAAACAAATAAAA--------TATAACCATTCCCTATTTGTAAACGATAG-----TAGGGATAATGT-T-AA-AAAAA--T-TAATAGTATACTTCTCAAGTTTACAAAATTACCCCACCCATCACCAGAAATCAAGCATTAATTAAAGTATACAAACACGCACAAAACGATACAAAGTAA-TTTTATTTTATCAT-GAGAAACTTA
gi|15 : TTTTTTAAAAA---TCATTTACCTAC-ATTT-AAA-CAAAA-AA--TGCCAATT-AACTGTGCAACATGCATGTCGTCAGTT-GGGTCCAAAATTTGGTAGATA-ATACATC------------TAT-AAAAA-GACAAAAATTATTA---ATAAAATCCGTCATGTCGCATGAACTAGTTAACAAATAAAA--------TATAACCATTCCCTATTTGTAAATGATAGTAGCCTAGGGATATTGA---------------------TAGACTCCTCAAGTTTAACAA-TTACCCCAACCATCACCAGAAATCAAGCATTAATTAAAGTATACAAACACGCACAAAACGAT-AAAAGTAA-TTTTATTTTATCAT-GAAAAA
gi|16 : CCATT-AACTGTGCAACATGCATATCATCAGTT-GGGTCCGAAATTTGGTAGATA-ATACATC------------TAT-AAAAA-GACAAGAATTATTA---ATAAAATCCGTCATGTCGCATGAACTATAAAAAAAATAAAA--------TATAACCATTCCCTATTTGTAAATGATAG-----TAGGGATATTGA-T-AT-AAAAA--T-TAATACAAAACTTCTCAAGTTTACAAA-TTATCCCACCCATCACCAGAAATCAAGCATTAATTAAAGTATACAAACACGCACAAAACGATAAAAAGTAA-TTTTATTTTATCAT-GAGAAACTTA
gi|17 : ATGTCGCCAGTT-GGGTCCGAAATTTGGTAGATA-ATACATC------------TAT-AATAA-GACAAGAATTATTA---ATAAAATTCGTCATGTTGCATGAACTATAAAACAAATAAAA--------TATAACCATTCCCTATTTGTAAATGATAG-----TAGGGATATTGA-T-AA-AAAAA--T-TATTACAAAACTTCTCATGTTTACAAA-TTACCCCACCCATCACCAGAAATCAAGCATTAATTAAAGTATACAAACACGCACAAAACGATAAAAAGTAA-TTTTATTTTATCAT-GAGAAA
gi|18 : TTTTTTTTAT------TCATTTACCTGT-TTTTT----TAAAA-AATTGGCCCATT-TACTGTGCAACAGGC
gi|19 : atgggtaaattttagatgctaacacattacgccctaaaacagttgttttgagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtttaatttagaatttaacacatatatatataTTTTAAAAAAA-GCATTTGCCTAC-GTTTTAAA-CAAAA-AA--GGCCCATT-AACTGTGCAACATCCATGTCGTCAGTT-GGGTCCGAAATTTGGTAGATATTTACATC------------TAT-AAAAA-GAC-AGAATTATTA---ATAAAATCCGTCATGCCGCATGAACTATTTAACAAATTGAA--------TATAACCATTCCCTATTTGTAAATGATAG-----TAGGGATATTAA-T-AA-AAAAA--A-TAATATTAAACTTCTCAAGT
gi|2 : TTTTTTTAAAAA---TCATTTACCTTC-GTTTTAAA-CAAGA-AA--GGCCCATT-AACTGTGCAACATGAAAGTCGTCAGTT-GGGTCCGAAATTTGGAAGATA-ATACATT------------TAT-AAAAA-GACAA-AATTATTATTTATAAAATCCGTCATGTCGCATGAACTTTTTAACAAATAAAA--------TATAACCATTCCCTATTTGTAAATGATAG-----TAGGGATATTGA-T-AA-AAAAA--AATAATATTAAACTTCTCAAGTATATAAA-TTACCCCACCCATCACCAGAAATCAAGCATTAATTAAAGTATACAAACACGCACAAAACGATAAAAAGTAA-GTTTATTTTATCAT-GAGAAACTT
gi|22 : TTTTTTT-AAAA---TCAATTACCTAC-TTTTTAAACCAAAA-AA--GGTCGATT-TACAGTGCAGCATGTATGTTGTCAGTTGGGGTCCAAAATTTGGTAGATA-AAACATCATTCTATATATATAT-ATAAA-GAC-AGAATTAATA---ATAAAATCCGTCATGTCGCATGAACTATTTAACAA--AAAA--------TAg
gi|23 : AAAT--------TATAACCATTCCCTATTTGTAAATGATAG-----TAGGGATATTGA-T-AA-AAAAA--A-TAATACAAAACTTCTCAAGTTTACAAA-TTACCCCACCCATCACCATAAATCAAGCATTAATTAAAGTATACAAACACGCACAAAACGATTAAAAGTTA-TTTTATCTTATCAT-GAGAAACTTATatgat
gi|24 : TTTTTTAAA-----TCATTTACCTACTTTTTTAAA-C-AAA-AA--GGCCCATT-AACTGTGCAACATGCATTTCGTCAGTT-GGGTCCTAAATTTGGTAGATA-ATACATC------------TAT-AAAAA-GACAAGAATTATTA---ATAAAATCCGTCATGTCG
gi|25 : TTTACCTAC-GTTTTAAA-CAAAA-AA--GGTCCATT-AACTGTGCAACATGCATGTCGTCAGTT-GGGTCCGAAATTTGGTAGATA-ATACATC------------TAT-AAAGA-GACAAGAATTATTA---ATAAAATCCGTCATGTCGCA
gi|26 : TTTTTTTAAAAA---TCATTTACCTAC-GTTTTAAA-CAAAA-AA--GGCCCATT-AACTGTACAACATGCACGT-GACAA-------CAGAAATTT-----AT--ATATATC------------TTT-AAAAT-CATGAGAA
gi|27 : AAAA---TCATTTACCTAC-GTTTTAAA-CAAAA-AA--GGCCCATT-AACTGTGCAACATGCATGTCGTCAGTT-GGGTCAGAAATTTGGT--ATA-ATACATT------------AAT-AAAAA-GACAAGAATactta
gi|28 : ACCCCACTCATCACCAGAAATCAAGCATTAATTAAAGTATACAAACACGCACAAAACGATAAAAAATAA-TTTTATTTTATCAT-GAGAAACTT
gi|29 : AAAAAGTAA-TTTTATTTTATCAT-GAGAAACTTATg
gi|3 : TTTTTTTAAAAAA---TCATTTACCTAC-GTTTTAAA-CAAAA-AA--GGCCCATT-AACTGTGCAACATGCATGTCTTCTGTT-TGGTCCGAAATGTGGTAGATA-ATACATC------------TAT-AAAAA-GACAAGAATTATTA---ATAAAGTCCGTCATGTCGCATGAACTATTTAACAAACAAAA--------TATAACCATTCCCTATTTGTAAATGATAG-----TAGGGATATTGA-T-AA-AAAAA--T-TAATAGTTAACTTCTCTAGTTTACAAA-TTACCCCACCAATCACCAGAAATCAAGCATTTATTAAAGTATACAAACACGCACAAAACGATAAAAAGTAA-TTTTATTTTATCAT-GAGAAACTTATt
gi|4 : TTTTTTTTAAAAA---TCAATTACCTAC-GTTTTAAA-CGAAA-AA--GGCCCATT-AACTGTGCAACATGCATGTCGTCAGTT-GGGTCCGAAATTTGGTAGATA-ATACATC------------TAT-AAAAA-GACAAGAATTATAA---ATAAAATCCGTCATGTCGCATGAACTATTTAACAAATAAAA--------TATAACCATTGCCTATTTGTAAATGATAG-----TAGGGATATTGA-T-AA-ATAAA--T-AAATACTAAACTTCTCAAGTTTACAAA-TTACCCCACCCATCACCAGAAATGAAGCATTAATTAAAGTATACAGACACGCACAAAACGATAAAAAGGAA-TTTCA-TTTATCAT-GAGAAACTTAT
gi|5 : TTTTTTTAAA-----TCATGTACCTAT-GTTTTAAA-CAAAA-AA--GGACCATTTAACTGTGCAACATGCATGTCGTTAGTT-TGGTCCGAAATTTGGTCGATA-ATACAAC------------TATAAAAAA-GAC-CGAATTATTG---ATAAAATCAGTCATGTCGCATGAACTATTTAACTAATAAAA--------TATAACCATTCCCTAATTGTAAATGATAG-----TAGGGATATCGA-T-AA-AAAAAAGT-TAATAATAAACTTCTCAAGTTTACAAT-TTACCTCATCCATCACCAGAAATCAAGTATTAATTAAAGTATACAGACACGCACAAAACGATAAAAAGTAA-TTTAATTTTATCAT-GAGAAACTT
gi|6 : TTTTTTTAAAAA---TCATTTACCTAC-GTTTTAAA-CAAAA-AA--GGCCCATT-AACTTTGCAACATGCATGTCGTCAGTT-TGGTCCGAAATTTGGTCGATA-ATACATC------------TGT-AAAAA-GACC-GAATTATTG---ATAAAATCCGTCATATCGCATGAACTATTTAACAAATAAAA--------TATAACCATTCCCTGTTTGTAAATGATAG-----AAGGGATATTGA-T-AA-TAAAA--C-TAATACTAAACTTCTCAAGTTTACAAA-TTACCCCACTCATCACCAGAAATCAAGCATTAATTGAAGTATACAGACACGCACAAAACGATAAAAAGTAA-TGTTATTTTATCATAAAGAAACTTA
gi|7 : TTTTTTTTAAA-----TCATTTACCTAC-GTTTTAAA-CAAAA-AA--G-CCCATT-AACTGTGCAACATGCATGTCGTCAGTT-GGGTCCGAAATTTGGTAGATA-ATACATC------------TAT-AAAAA-GACAAGAATTATTA---ACAAAATCCGTCATGTCGCATGAACTATAAAACAAATAAAT--------TATAACCATTCCCTATTTGTAAATGATAG-----CAGGGATATTGA-T-AACAAAAA--T-TAATACAAAACTTCTCAACTTTAAAAA-TTACCCCACCCATCACCAGAAATCAAGCATTAATTAAAGTATACAAACACGCACAAAATGATAAAAAGCAA-TTTTATTTTATCAT-GAGAAACTTA
gi|8 : TTTTAAAAAAAATGATTTACCTAC-GTTTCAAA-CAAAAAAA--GGCCCATT-AACTGTGCAACATGCATGTCGTCAGTT-GGGTCCGAAATTTGGTAGGTA-ATACATC------------TAT-AAAAA-GACAAGAATTATTA---ATAAAATCCGTCATGTCGCATGAACTATTTAACAAATAAAA--------TATAACCATTCCCTATGTGTAAATGATAG-----TAGGGATATTGA-T-AA-AAAA-----TAATACTAAACTTCTTAAGTGTACAAA-TTACCCAACCCATCACCAGAAATCAAGCATTAATTAAAGTATACAAACACGCACAAAACGAT-AAAAGTAATTTTTATTTTATCAT-GAGAAACTTA
gi|9 : TTTTTTAAAAA---TCGTTTACCTAC-GTTTTAAA-CAAAA-A---GGCCCATT-AACTGTGCAACATGCATGTCGTCAGTT-GGGTCCGAAATTTGGTAGATT-ATACATC------------TAT-AAAAA-GACACGAATT-TTA---ATAAAATCCGTCATGTCGCATGAACTATTTAACAAATGAAA--------TATAACCATTCCCTATTTGTAAATGATAG-----AAGGGATATTGA-T-AA-AAAAA--T--AATACTAAACTTCTCAAATTTACAAA-TTACCCCACCCATCACCAGAAATCAAGCATTAATTAAAGTATACAGACAAGCACAAAACGATAAAAAGTAA-TTTCATATTATCAT-GAGAAACTTA
blockSeqs : A AAA T C A TT T G T ATTCTATATATA A A TTT CTGTCTGA TAGCC T . C AGT A T A
blockSeqs : A AA . . . T . . . . . . . . . . . . AA . . .
blockSeqs : G . . . . . . . . . . . . . . . . . A . . .
blockSeqs : A . . . . . . . . . . . . . . . . . T . . .
blockSeqs : A . . . . . . . . . . . . . . . . . T . . .
blockSeqs : A . . . . . . . . . . . . . . . . . T . . .
blockSeqs : A . . . . . . . . . . . . . . . . . T . . .
blockSeqs : A . . . . . . . . . . . . . . . . . T . . .
blockSeqs : A . . . . . . . . . . . . . . . . . T . . .
blockSeqs : A . . . . . . . . . . . . . . . . . A . . .
blockSeqs : A . . . . . . . . . . . . . . . . . A . . .
blockSeqs : A . . . . . . . . . . . . . . . . . T . . .
blockSeqs : A . . . . . . . . . . . . . . . . . T . . .
blockSeqs : A . . . . . . . . . . . . . . . . . C . . .
blockSeqs : A . . . . . . . . . . . . . . . . . T . . .
blockSeqs : . . . . . . . . . . . . . . . . . . T . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . .
blockSeqCons : ***
originalCons : TTTTTTTTAAAAA---TCATTTACCTAC-GTTTTAAA-CAAAA-AA--GGCCCATT-AACTGTGCAACATGCATGTCGTCAGTT-GGGTCCGAAATTTGGTAGATA-ATACATC------------TAT-AAAAA-GACAAGAATTATTA---ATAAAATCCGTCATGTCGCATGAACTATTTAACAAATAAAA--------TATAACCATTCCCTATTTGTAAATGATAG-----TAGGGATATTGA-T-AA-AAAAA--T-TAATACTAAACTTCTCAAGTTTACAAA-TTACCCCACCCATCACCAGAAATCAAGCATTAATTAAAGTATACAAACACGCACAAAACGATAAAAAGTAA-TTTTATTTTATCAT-GAGAAACTTAT
finalCons : TTTTTTTTAAAAA---TCATTTACCTAC-GTTTTAAA-CAAAA-AA--GGCCCATT-AACTGTGCAACATGCATGTCGTCAGTT-GGGTCCGAAATTTGGTAGATA-ATACATC------------TAT-AAAAA-GACAAGAATTATTA---ATAAAATCCGTCATGTCGCATGAACTATTTAACAAATAAAA--------TATAACCATTCCCTATTTGTAAATGATAG-----TAGGGATATTGA-T-AA-AAAAA--T-TAATACTAAACTTCTCAAGTTTACAAA-TTACCCCACCCATCACCAGAAATCAAGCATTAATTAAAGTATACAAACACGCACAAAACGATAAAAAGTAA-TTTTATTTTATCAT-GAGAAACTTAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): GTTAATTTTAAATGCTAACACATTACGCCCCAAAACAGGTGTTTTAGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCTGAAATTAGAAATAAACTTATATTCTAATTTTTAAAATCATTTACCTATTTTTATTTTTAAATTTTCCCATTAACTGTGCAACAGGAA
Unaligned ( gi|21 ): TGGGTAAATTTTAGATGCTAACACATTACGCCCTAAAACAGTTGTTTTGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTGTAATTTAGACTTTAACACATATATATATTTTTTTATTCATTTACCTGTTTTTTTTTTCAAAATTGGCCCATTTATG
Alignments
lowQualScore : 2 888 1 1 1 44 1 1 1 888888888888 1 1 333 77777777 55555 2 2 2 6666 0 2 2 2
lowQualScore : . ... . . . .. . . . ............ . . ... ........ ..... . . . .... . . . .
lowQualScore : 2 666 8 8 8 33 7 7 7 999999999999 7 7 333 22222222 33333 1 1 1 2222 5 2 0 0
consensus : TTTTTTTTAAAAA---TCATTTACCTAC-GTTTTAAA-CAAAA-AA--GGCCCATT-AACTGTGCAACATGCATGTCGTCAGTT-GGGTCCGAAATTTGGTAGATA-ATACATC------------TAT-AAAAA-GACAAGAATTATTA---ATAAAATCCGTCATGTCGCATGAACTATTTAACAAATAAAA--------TATAACCATTCCCTATTTGTAAATGATAG-----TAGGGATATTGA-T-AA-AAAAA--T-TAATACTAAACTTCTCAAGTTTACAAA-TTACCCCACCCATCACCAGAAATCAAGCATTAATTAAAGTATACAAACACGCACAAAACGATAAAAAGTAA-TTTTATTTTATCAT-GAGAAACTTAT
Reference ( family-46 ) : TTTTTTTTAAAAA---TCATTTACCTAC-GTTTTAAA-CAAAA-AA--GGCCCATT-AACTGTGCAACATGCATGTCGTCAGTT-GGGTCCGAAATTTGGTAGATA-ATACATC------------TAT-AAAAA-GACAAGAATTATTA---ATAAAATCCGTCATGTCGCATGAACTATTTAACAAATAAAA--------TATAACCATTCCCTATTTGTAAATGATAG-----TAGGGATATTGA-T-AA-AAAAA--T-TAATACTAAACTTCTCAAGTTTACAAA-TTACCCCACCCATCACCAGAAATCAAGCATTAATTAAAGTATACAAACACGCACAAAACGATAAAAAGTAA-TTTTATTTTATCAT-GAGAAACTTAT
gi|1 : TTTTTGTTAAAAAAA-TCAGTTACCTTC-GTTTTAAA-CAAAA-AA--GGCCCATT-AACTGTGCAACATGCATGTCGTCAGTT-TGGTCCGAAATTTTGTAGATA-ATACATC------------TAT-AAAAA-GACAAGAATTATTA---ATAAAATCCGTCATGTCACATGAACTATTTAACAAATAAAA--------TATAACCATTCCCTATTTGTAAATGATAG-----TAGGGATATTGA-TAAA-AAAAA--A-TAATACTAAACTTCTCATGTTTACAAA-TTACCCCACCCATCACCAGAAATCAAGCATTAATTATAGTATACAAACACGCACAAAACGATAAAAAATAA--TTTAATTTATCAT-GAGAAACTTA
gi|10 : tTTTTGTTTTAAAA---TCATTTACCTAC-GTTTTAAA-CAAAA--A--GGCCCATT-AACTGTGCAATATGCATGTCGTCAGTT-GGGTCCGAAATTTGGTAGATA-ATACATC------------TAT-AAAAA-GACAAGAATTATTA---ATAAAATCTGTCGTGTCACATGAACAATTAAACTAATAAAA--------TATAACCATTCCCTATTTGTAAATGATTG-----TAGGGATATTGATT-AA-AAAAA--A-TAATACAAAACTTCTCAAGTTTACAAA-TTACCCCACCCATCAACAGAAATCAAGCATTAATTAAAGTATACAATCAAGCACAAAACGA-------TAA-TTTTATTTTACTAT-GAGAAACTTA
gi|11 : TTTTTTTAAAAA---TCATTTACCTAC-GTTTTAAA-CAAAA-AA--GGCCCATT-AACTGTGCAACATGCATGTCGTCAGTC-GGGTCCAAAATTTGGTAGATA-ATACATC------------TAT-AAAAA-GACAAGAACTATTA---ATAAAATCCGTCATGTC-CTTGAGCTATTTAACAAATAAAA--------TATAACCATTCCCTATTTGTAAATGATAG-----TAGGGATATTGA-T-AA-AAAAA--T-TAAT-----ACTTATCAAGTTTACAAA-TTACCCCACCCATCACCAGAAATCAAGCATTAATTAAAGTATACAAACTCGCACAAAACGTTAAAAAGTAA-TTTTATTTTATCAT-GAGAAACTT
gi|12 : TTTTTTTAAAGG------------TAC-GTTTTAAA-C-AAA-AA--GGCCCATT-AACTGTGCAACATGCATGTCGCCAGTT-GGGTCCGAAATTTGGTAGATA-ATACATC------------TAT-AAAAA-GACAAGAATTATTA---ATAAAATCCGTCATGTCGCATGAAATAAAAAACAAATAAAA--------TATAACCATTCCCTATTTGTAAATGATAG-----TAGGGATATTGA-T--A-AAAAA--T-TAATACAAAACTTCTCAAGTTTACAAA-TTATCCCACCCATCACCAGAAATCAAGCATTAATTAAAGTATACAAACATGCACAAAACGATAAAAAGTAA-TTTTATTTTATCAT-GAGAAACTTA
gi|13 : TTTTAAA-----TCATTTACCTAC-GTTCTAAA-CAAAA-AAT-GGCCCATT-TACTGGGCAACATGCATGTCATCAGTT-TGGTCC-AGATC----AGATA-ATACATC------------TAT-AAAAAAGACA-GAATTATTA---ATAAAACCCGTCATGTCGCATGAA-TATTTAACAAATAAGACTGTCTGATATAACCATTCCCTATTTGTGAATGACAA-----TAGAGATAGTGA-T-CA-AACT---T-TAATACTAAA--------GTTTACAAA-TTACTCCACCCATCACCAGAAATCCAGCATTAATTAAAGTATACCGACAAGCATAAAACGATAAATAGTAA-TTTTATTTTAACAT-GAGAAACTTA
gi|14 : TTTATCTTTAAAA---TCATTTACCTAC-GTTTTAAA-CAAAA-A---GGCCCATT-AACTGTGCAACATGCATGTCGTCAGTT-GGGTCCGAAATTTGGTAGATA-ACACATC------------TAT-AAAAA-GACAAGAATTATTA---ATAAAATCCG------------AACTATAAAACAAATAAAA--------TATAACCATTCCCTATTTGTAAACGATAG-----TAGGGATAATGT-T-AA-AAAAA--T-TAATAGTATACTTCTCAAGTTTACAAAATTACCCCACCCATCACCAGAAATCAAGCATTAATTAAAGTATACAAACACGCACAAAACGATACAAAGTAA-TTTTATTTTATCAT-GAGAAACTTA
gi|15 : TTTTTTAAAAA---TCATTTACCTAC-ATTT-AAA-CAAAA-AA--TGCCAATT-AACTGTGCAACATGCATGTCGTCAGTT-GGGTCCAAAATTTGGTAGATA-ATACATC------------TAT-AAAAA-GACAAAAATTATTA---ATAAAATCCGTCATGTCGCATGAACTAGTTAACAAATAAAA--------TATAACCATTCCCTATTTGTAAATGATAGTAGCCTAGGGATATTGA---------------------TAGACTCCTCAAGTTTAACAA-TTACCCCAACCATCACCAGAAATCAAGCATTAATTAAAGTATACAAACACGCACAAAACGAT-AAAAGTAA-TTTTATTTTATCAT-GAAAAA
gi|16 : CCATT-AACTGTGCAACATGCATATCATCAGTT-GGGTCCGAAATTTGGTAGATA-ATACATC------------TAT-AAAAA-GACAAGAATTATTA---ATAAAATCCGTCATGTCGCATGAACTATAAAAAAAATAAAA--------TATAACCATTCCCTATTTGTAAATGATAG-----TAGGGATATTGA-T-AT-AAAAA--T-TAATACAAAACTTCTCAAGTTTACAAA-TTATCCCACCCATCACCAGAAATCAAGCATTAATTAAAGTATACAAACACGCACAAAACGATAAAAAGTAA-TTTTATTTTATCAT-GAGAAACTTA
gi|17 : ATGTCGCCAGTT-GGGTCCGAAATTTGGTAGATA-ATACATC------------TAT-AATAA-GACAAGAATTATTA---ATAAAATTCGTCATGTTGCATGAACTATAAAACAAATAAAA--------TATAACCATTCCCTATTTGTAAATGATAG-----TAGGGATATTGA-T-AA-AAAAA--T-TATTACAAAACTTCTCATGTTTACAAA-TTACCCCACCCATCACCAGAAATCAAGCATTAATTAAAGTATACAAACACGCACAAAACGATAAAAAGTAA-TTTTATTTTATCAT-GAGAAA
gi|18 : TTTTTTTTAT------TCATTTACCTGT-TTTTT----TAAAA-AATTGGCCCATT-TACTGTGCAACAGGC
gi|19 : atgggtaaattttagatgctaacacattacgccctaaaacagttgttttgagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtttaatttagaatttaacacatatatatataTTTTAAAAAAA-GCATTTGCCTAC-GTTTTAAA-CAAAA-AA--GGCCCATT-AACTGTGCAACATCCATGTCGTCAGTT-GGGTCCGAAATTTGGTAGATATTTACATC------------TAT-AAAAA-GAC-AGAATTATTA---ATAAAATCCGTCATGCCGCATGAACTATTTAACAAATTGAA--------TATAACCATTCCCTATTTGTAAATGATAG-----TAGGGATATTAA-T-AA-AAAAA--A-TAATATTAAACTTCTCAAGT
gi|2 : TTTTTTTAAAAA---TCATTTACCTTC-GTTTTAAA-CAAGA-AA--GGCCCATT-AACTGTGCAACATGAAAGTCGTCAGTT-GGGTCCGAAATTTGGAAGATA-ATACATT------------TAT-AAAAA-GACAA-AATTATTATTTATAAAATCCGTCATGTCGCATGAACTTTTTAACAAATAAAA--------TATAACCATTCCCTATTTGTAAATGATAG-----TAGGGATATTGA-T-AA-AAAAA--AATAATATTAAACTTCTCAAGTATATAAA-TTACCCCACCCATCACCAGAAATCAAGCATTAATTAAAGTATACAAACACGCACAAAACGATAAAAAGTAA-GTTTATTTTATCAT-GAGAAACTT
gi|22 : TTTTTTT-AAAA---TCAATTACCTAC-TTTTTAAACCAAAA-AA--GGTCGATT-TACAGTGCAGCATGTATGTTGTCAGTTGGGGTCCAAAATTTGGTAGATA-AAACATCATTCTATATATATAT-ATAAA-GAC-AGAATTAATA---ATAAAATCCGTCATGTCGCATGAACTATTTAACAA--AAAA--------TAg
gi|23 : AAAT--------TATAACCATTCCCTATTTGTAAATGATAG-----TAGGGATATTGA-T-AA-AAAAA--A-TAATACAAAACTTCTCAAGTTTACAAA-TTACCCCACCCATCACCATAAATCAAGCATTAATTAAAGTATACAAACACGCACAAAACGATTAAAAGTTA-TTTTATCTTATCAT-GAGAAACTTATatgat
gi|24 : TTTTTTAAA-----TCATTTACCTACTTTTTTAAA-C-AAA-AA--GGCCCATT-AACTGTGCAACATGCATTTCGTCAGTT-GGGTCCTAAATTTGGTAGATA-ATACATC------------TAT-AAAAA-GACAAGAATTATTA---ATAAAATCCGTCATGTCG
gi|25 : TTTACCTAC-GTTTTAAA-CAAAA-AA--GGTCCATT-AACTGTGCAACATGCATGTCGTCAGTT-GGGTCCGAAATTTGGTAGATA-ATACATC------------TAT-AAAGA-GACAAGAATTATTA---ATAAAATCCGTCATGTCGCA
gi|26 : TTTTTTTAAAAA---TCATTTACCTAC-GTTTTAAA-CAAAA-AA--GGCCCATT-AACTGTACAACATGCACGT-GACAA-------CAGAAATTT-----AT--ATATATC------------TTT-AAAAT-CATGAGAA
gi|27 : AAAA---TCATTTACCTAC-GTTTTAAA-CAAAA-AA--GGCCCATT-AACTGTGCAACATGCATGTCGTCAGTT-GGGTCAGAAATTTGGT--ATA-ATACATT------------AAT-AAAAA-GACAAGAATactta
gi|28 : ACCCCACTCATCACCAGAAATCAAGCATTAATTAAAGTATACAAACACGCACAAAACGATAAAAAATAA-TTTTATTTTATCAT-GAGAAACTT
gi|29 : AAAAAGTAA-TTTTATTTTATCAT-GAGAAACTTATg
gi|3 : TTTTTTTAAAAAA---TCATTTACCTAC-GTTTTAAA-CAAAA-AA--GGCCCATT-AACTGTGCAACATGCATGTCTTCTGTT-TGGTCCGAAATGTGGTAGATA-ATACATC------------TAT-AAAAA-GACAAGAATTATTA---ATAAAGTCCGTCATGTCGCATGAACTATTTAACAAACAAAA--------TATAACCATTCCCTATTTGTAAATGATAG-----TAGGGATATTGA-T-AA-AAAAA--T-TAATAGTTAACTTCTCTAGTTTACAAA-TTACCCCACCAATCACCAGAAATCAAGCATTTATTAAAGTATACAAACACGCACAAAACGATAAAAAGTAA-TTTTATTTTATCAT-GAGAAACTTATt
gi|4 : TTTTTTTTAAAAA---TCAATTACCTAC-GTTTTAAA-CGAAA-AA--GGCCCATT-AACTGTGCAACATGCATGTCGTCAGTT-GGGTCCGAAATTTGGTAGATA-ATACATC------------TAT-AAAAA-GACAAGAATTATAA---ATAAAATCCGTCATGTCGCATGAACTATTTAACAAATAAAA--------TATAACCATTGCCTATTTGTAAATGATAG-----TAGGGATATTGA-T-AA-ATAAA--T-AAATACTAAACTTCTCAAGTTTACAAA-TTACCCCACCCATCACCAGAAATGAAGCATTAATTAAAGTATACAGACACGCACAAAACGATAAAAAGGAA-TTTCA-TTTATCAT-GAGAAACTTAT
gi|5 : TTTTTTTAAA-----TCATGTACCTAT-GTTTTAAA-CAAAA-AA--GGACCATTTAACTGTGCAACATGCATGTCGTTAGTT-TGGTCCGAAATTTGGTCGATA-ATACAAC------------TATAAAAAA-GAC-CGAATTATTG---ATAAAATCAGTCATGTCGCATGAACTATTTAACTAATAAAA--------TATAACCATTCCCTAATTGTAAATGATAG-----TAGGGATATCGA-T-AA-AAAAAAGT-TAATAATAAACTTCTCAAGTTTACAAT-TTACCTCATCCATCACCAGAAATCAAGTATTAATTAAAGTATACAGACACGCACAAAACGATAAAAAGTAA-TTTAATTTTATCAT-GAGAAACTT
gi|6 : TTTTTTTAAAAA---TCATTTACCTAC-GTTTTAAA-CAAAA-AA--GGCCCATT-AACTTTGCAACATGCATGTCGTCAGTT-TGGTCCGAAATTTGGTCGATA-ATACATC------------TGT-AAAAA-GACC-GAATTATTG---ATAAAATCCGTCATATCGCATGAACTATTTAACAAATAAAA--------TATAACCATTCCCTGTTTGTAAATGATAG-----AAGGGATATTGA-T-AA-TAAAA--C-TAATACTAAACTTCTCAAGTTTACAAA-TTACCCCACTCATCACCAGAAATCAAGCATTAATTGAAGTATACAGACACGCACAAAACGATAAAAAGTAA-TGTTATTTTATCATAAAGAAACTTA
gi|7 : TTTTTTTTAAA-----TCATTTACCTAC-GTTTTAAA-CAAAA-AA--G-CCCATT-AACTGTGCAACATGCATGTCGTCAGTT-GGGTCCGAAATTTGGTAGATA-ATACATC------------TAT-AAAAA-GACAAGAATTATTA---ACAAAATCCGTCATGTCGCATGAACTATAAAACAAATAAAT--------TATAACCATTCCCTATTTGTAAATGATAG-----CAGGGATATTGA-T-AACAAAAA--T-TAATACAAAACTTCTCAACTTTAAAAA-TTACCCCACCCATCACCAGAAATCAAGCATTAATTAAAGTATACAAACACGCACAAAATGATAAAAAGCAA-TTTTATTTTATCAT-GAGAAACTTA
gi|8 : TTTTAAAAAAAATGATTTACCTAC-GTTTCAAA-CAAAAAAA--GGCCCATT-AACTGTGCAACATGCATGTCGTCAGTT-GGGTCCGAAATTTGGTAGGTA-ATACATC------------TAT-AAAAA-GACAAGAATTATTA---ATAAAATCCGTCATGTCGCATGAACTATTTAACAAATAAAA--------TATAACCATTCCCTATGTGTAAATGATAG-----TAGGGATATTGA-T-AA-AAAA-----TAATACTAAACTTCTTAAGTGTACAAA-TTACCCAACCCATCACCAGAAATCAAGCATTAATTAAAGTATACAAACACGCACAAAACGAT-AAAAGTAATTTTTATTTTATCAT-GAGAAACTTA
gi|9 : TTTTTTAAAAA---TCGTTTACCTAC-GTTTTAAA-CAAAA-A---GGCCCATT-AACTGTGCAACATGCATGTCGTCAGTT-GGGTCCGAAATTTGGTAGATT-ATACATC------------TAT-AAAAA-GACACGAATT-TTA---ATAAAATCCGTCATGTCGCATGAACTATTTAACAAATGAAA--------TATAACCATTCCCTATTTGTAAATGATAG-----AAGGGATATTGA-T-AA-AAAAA--T--AATACTAAACTTCTCAAATTTACAAA-TTACCCCACCCATCACCAGAAATCAAGCATTAATTAAAGTATACAGACAAGCACAAAACGATAAAAAGTAA-TTTCATATTATCAT-GAGAAACTTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): GTTAATTTTAAATGCTAACACATTACGCCCCAAAACAGGTGTTTTAGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCTGAAATTAGAAATAAACTTATATTCTAATTTTTAAAATCATTTACCTATTTTTATTTTTAAATTTTCCCATTAACTGTGCAACAGGAA
Unaligned ( gi|21 ): TGGGTAAATTTTAGATGCTAACACATTACGCCCTAAAACAGTTGTTTTGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTGTAATTTAGACTTTAACACATATATATATTTTTTTATTCATTTACCTGTTTTTTTTTTCAAAATTGGCCCATTTATG