lowQualScore : 11111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111
lowQualScore : 1 1 1 111 11111111111 1 11 2222222222222222 2222 1111111 11 4444444444 11111111 00000000000000000000000000000000000000000 11 1 22222 222222222 3333333333 111 111 1111 3333333 1 11 22222 11 1111111 0000000000000000000000000000000000000000000000 1 222 1111 3333 1111
lowQualScore : 5 6 6 7 5 6 6 6 222 777 4 55555555555 3 3 7 6 99 4 4 2 4444444444444444 0 1111 3 99 88 5 5 44 6666666 33 4 3333333333 3 2 77777777 44 8 5 1 3 3 6 8 3 5 11111111111111111111111111111111111111111 11 6 6 8 0 1 33333 4 666666666 6666666666 5 000 666 1 3 4444 4 4 3333333 5 0 44 55 0 0 9999 33333 5 5 33 2 8888888 9999999999999999999999999999999999999999999999 2 6 555 0 4444 0 4 1111 1111 1 4
lowQualScore : . . . . . . . . ... ... . ........... . . . . .. . . . ................ . .... . .. .. . . .. ....... .. . .......... . . ........ .. . . . . . . . . . ......................................... .. . . . . . ..... . ......... .......... . ... ... . . .... . . ....... . . .. .. . . .... ..... . . .. . ....... .............................................. . . ... . .... . . .... .... . .
lowQualScore : 0 0 0 0 0 0 0 0 666 666 8 99999999999 3 1 9 2 00 5 7 3 5555555555555555 8 9999 2 22 11 3 7 55 4444444 66 3 0000000000 9 7 00000000 66 9 0 7 9 7 7 0 5 3 55555555555555555555555555555555555555555 22 0 4 4 7 0 22222 6 777777777 0000000000 7 000 777 7 0 0000 9 3 0000000 0 2 88 88 2 5 1111 11111 0 7 77 7 3333333 7777777777777777777777777777777777777777777777 7 7 333 7 2222 3 0 8888 0000 5 2
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTACGTTGGCATGGACTATTTGCTCAGTACGATTGTTGAAATGTTACACATGCCATAGTGCTGCTTTCAGAACAAAATGATGCAATGCTCTATATTTAGTTACTGTTGCTAAGGTTGTCGCTGAAGATGTAATTGAAGACTGCTTTCACGTGGAGAACCCAATCTCGCCCACTTCTGTGGGATTTACGAAGTACTTCACCCAGGGCACTAGTTCACCCTCGGTACCCATAACATTCACTCACGATGTATACCTTCTTGGGTGGAAACGGGGTAATTATCGAGGTAACACATACTTTAATTGAAATGCGCGTAATGTATAATACATCACTAGCATAGCAATATATAAG--AATTACATGGTTAGTAGCTT---------AGAATGTCAGCTGTA-TTTTGG-CGAGTGTAAGAAAAGTAATAAATGCGAGCCNTTG------GCGAGC-A-TTTATTTCTTTTCGTCACGAGCC--AACATGAAAC-ACTATTNGTTTTC-ACCACTTTTCGTT------TAAAAGGCGAANATAAATTT--ATAT-TTTGTCATCGCACTTCNCCTTTAAC-AAA-T-ACGGCAGTTAGCGGATGAATCTTAAGNACGACATCGCGTGCTGGCGAATCACCTACAACATCATTCGGAACACCTCGCTC---------AA-------AAAGTG--------C--------CCCGAGGAGTTCCGAATGCTACAGCAAAGAAATAGTTCGATAATCGAACC-AA-TATTACGG---------TGGTTTTGGGTTCGCTATGTGTA-T---TAAA-TGTTTCTTACCT-AATATATATGTNTA-TAT--T-ACCTAATNATTCAATCACAAAGTTTCCTTGCAAATA---CAGTATTA-----ACTCC-A-AA-TCTAAAAATAGACGA---GGTGAAGAA----------AAA--A----GNAG-------------G--------CTACTAGCATAATACAGCTTGGAAAAC-ATTATGCTAG----TAGCAGTCAACTGTATTAAAATGTTAGTAAAGTTAAAAGTTGCATGATAAAT
Reference ( gi|1 ) : TCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTACGTTGGCATGGACTATTTGCTCAGTACGATTGTTGCAATGTTACGCATGCCATAGTGCTGCTTTCAGAACAAAATGATGCAATGCTCTATGTTAAGTTACTGTTGCTAAGGTTGTCGCTGAAGATGTAATTGAAGACTGCTTTCACGTGGAGAACCCAATCTCGCCGACTTTTGTGGGATTTACGAAGTACTCCACCCAGGGCACTAGTTCACCCTCGGTACCCATAACATTCACTCACGATGTATACCTTCTTGGATGGAAACGGGGTAATTATCGAGGTAACACATACTTTAATTGAAATGCGCGTAATGTATAATACATCACTAGCATAACAATATATAAA--AATTACATGGCTAGTAGCTT---------ATAATGTCAGATGTA-TTTTTG-CGAGTAAAAGAAAAGTAACAGATGCGAGCCTTTG------GCGAGT-A-GTTATTTCTTTTCTCCATGAGCC--AACATGAAAC-GCTATTGGTTTTC-ACCACTTTTCATT------TAAAAGCTGAAAATAAA--C--ATATGTTTGTCATCGCATTACACCTTAAAC-AAA-T-ACAGCAGTTAACGGGTGAATTTTAAGAATGACATCGCGTGCTGGTGAATCACCTACAATATCATTCGGAACACCTCGCTC---------AA-------AAAGTG--------C--------CCAAAGGAGTTCCGGATGCTACAGCATATAAATAGTCCGATAATCGAACC-AA-TATTACGG---------TGGTTTTGAGATCGATAGGTGTA-T---TAAT-TATTTCTTACCT-AATATATATATATA-TAT--T-ACCAAATGGTTCAATCACAAAGTTTCCTTGCAAATA---TAGTATTG-----ACTCC-A-AT-TCCAAAAATAGATGA---GGTGAAAAA----------AAA--A----GGAG-------------G--------CTACTAGCATAATACAGCTTGGTAAAC-ATGAGGTCAG----TAGCAGTCAACTATATTAAAATGTTAGTAAACTTAAAAGTTGCATGATGAAT
gi|2 : ATTTACGTTGGCATGGACTATTTGCTCAGTACGATTGTTGAAATGTTACACATGCCATAGTGCTGCTTTCAGAACAAAATGATGCAATGCTCTATATTTAGTTACTGTTGCTAAGGTTGTCGCTGAAGATGTAATTGAAGACTGCTTTCACGTGGAGAACCCAATCTCGCCCACTTCTGTGGGATTTACGAAGTACTTCACCCAGGGCACTAGTTCACCCTCGGTACCCATAACATTCACTCACGATGTATACCTTCTTGGGTGGAAACGGGGTAATTATCGAGGTAACACATACTTTAATTGAAATGCGCGTAATGTATAATACATCACTAGTATAACAATATATAAG--AATTACATGGCTAGTAGCTT---------ATAATGTCAGATGTATTTTTTT-CGAGTAAAAGAAAAGTAACAGATGCGAGCCTTTG------GCGAGT-A-GTTATTTCTTTTCGCCATGAGCC--AACATGAAAC-GCTATTGTTTTTC-ACTACTTTTCATT------TAAAAGCTGAGAATAAA--C--ATATGTTT-TCATCGCATTTCACCTTTAAC-AAA-T-ACAGCAGTTAACGGGTGAATTTTAAGAATGACATCGCGTGCTGGTGAATCACCTACAATATCATTTGGAACACCTCGCTC---------AA-------AAAGTG--------C--------CCAAAGGAGTTCCGAATGCTACAGCATATAAATAGTCCGATAATCGAATC--------ACGG---------TGGTTTTGAGATCGATAAGTGTA-T---TAAA-TATTTCTTACCT-AATATATATATATA-TAT--TAACCAAATGGTTCAATCACAAAGTTTCCTTGCAAATA---TAGTATTA-----GCTCC-A-AT-TCCAAAAATAGATGA---GGTGAAAAA----------AAAGTA----GGTG-------------G--------CTACTAGCATAATACAGCTTGGTAAAC-ATTAGGTCAG----TAGCAGTCAACTATATTAAAATGTTAGTAAACTTAAAAGTTGCATGATG
gi|8 : ctcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGCATAGTAA---ATAGC--AATTACATTGTTAGTAGCTT---------AGAATGGTAGCTGTA-CTTTAG-CAAGTGTTATAAAAGTAATAAATGCGAGCCATAG------GCCAGC-A-TTTATTACTTTTTGTCACGAGCC--AAAAT
gi|6 : cctgtgattttgtacagtagaattttatctttgtgtaacttatgataaagttttgggtaagaatCAA-ATGTAAG--AATAATATGGTTTGTAGGTT---------AGCGTGTCTGCTGT---CTTTGACGAGTGTAAGAAAAGTAATTAATGCAAGCCTTTATTCGTCGCAAGCCATGTTACTT---------ATG---T--ATCATGAAAC-AATCTTATTTTTC-AACACTTTTTGTT-------AAAAGGTGAACATAAATTC--ATAT-TTTGTCAACGCACTTCACTTTTTAC-AAA-TTACGGCAATTAGCGGATGAATTTTAAGTACAAAATCGCATATTGGCGAATCACATACAACAatagctgacattctaagctactaactatgtaattaatttatcatttaacaccattggttttttactaatttttgtttaaaaggcgaacataaatttatattttgtcattgcacttcccctttaacaaaatacg
gi|4 : acatccttaagtgaatATAAATAAA--G--TACATGGTTAGTTGCTT---------GGAATGACAGCTGTA-TTTTaacaaatagttccattatcgaaccaaatattacatcaaagtttccttgtaaatactgtaatgcaataactccaaacctaaaaatagacgaggagcaaaagagtttccggagaaagagaattttcatcttctaacatataaaaacttggaaaatagtccgctgatagccgtaaactgtattaaatttaacgttgcattataaat
gi|12 : attacatggttatagttttgaattttgatgatgtcagctgtattttggcgagtgtaagaaaaataataaataaagtaataaagaatcttctcgccacgagcccATTTATAAG--AATTACATGGTTAGTAGCTT---------AGAATGGCAGCTGTA-TTTTGG-CGAcatgagacaccattagttttcaccactttttgtttaaaaggcaaacataaatttatattttgccatttcacttcccctttaacaaagtacagcagaaagcggatctattgcgacagcgtcaaagaaatagttcgtggttttgagtttgctatgtgtattaaatgtgtataaccttatatatttatagtaacctaatgattcaatcacaaagtttccatgcaaatacaacataaacgtcaaataaaaaaatatacgagagggagaagtagttctatctttctatctactatcactatacagcttggaaaacgttatattagtaaccgtcatctgaattgttagtaaggttaaagttccaagcaagata
gi|8 : atttgttaatcgtaatgtaaacgggcaaagcccggctttagatattgcaaatgagaatgatttaaattttcattttttctgATAAATTAATTACATAGTTAGTAGCTT---------AGAATGTCAGCTATA-TTTTGG-CTCGTGACA-AAAAGTAATAAATGCTGGCCTATG------GCTCGC-A-TTTATTACTTTT
gi|13 : cctgtgattttgtacagtagaattttatctttgtgtaacttatgataaagttttgggtaagaatgcatagtaaatagcaattacattgttagtagcttagaatggtagctgtactttagcaagtgttatAAG--AATTACTTGGTTAGTAGCTT---------AAAAAGTCAGCAGTA-TTTTGG-CGAGTGTAAGAAAAGTGATAAATGCAAGACTcatttaacaccattggttttttactaatttttgtttaaaaggcgaacataaatttatattttgtcattgcacttcccctttaacaaaatacg
gi|3 : catcatttaatgattcA--AATTACATGGTTAGTAGTTT---------AGAATATCAGCTTTA-TTTTGG-CTCGT-GACGAAAAGAAATATATGGTCGCCATCG------GCTCGC-A-TCTATTATTTTTCT
gi|14 : tggacaagtgttgtcaactaaaacatatctctattgcgattgta--AACTACACGGTTAGTAGCTT---------AGAATGTCAGCTGTA-TTTTGG-TGAGTGTAAGAAAAGTAATAAATGCGAGatttttatcatgaaacactatttgatttcaccacttataaaaggggaaaatacattaatattttgtcattgcataatatatgacagttagcagatgaatcttaatcacgacatcgcgtgctggcgaataaccaacaaaaacgaaatagttcgttaaccaactgtgacagtggttttaggtttgccgtgtgtaataagtaatgtatttcttaccggaaaatatctgtttagtaccgtacctaatcatacaatcaaaacacttccttgccaatacagtattaactctatacttcaaaatagataaggggaaaagtaaaactggcggcgaacatgattcagcttggaaaactatttggctagtagaagttaactctattatgttagtaaatttgcatgatcaa
gi|4 : ATTACATGGTTA-TAGTTTTGAATTTTGATGATGTCAGCTGTA-TTTTGG-CGAGTGTAAGAAAAATAATAAAT
gi|10 : ATTACATGGTTAGTAGATT---------AGAAAGTCATTTGTA-TTTTGG-CGAaaagtaataaagaatcttctcgccacgagcccaaaatacagctgtcattccaagcaactaaccatgtactttatttatcatgagacaccattagttttcaccactttttgtttaaaaggcaaacataaatttatattttgccatttcacttcccctttaacaaagtacagcagaaagcggatctattgcgacagcgtcaaagaaatagttcgtggttttgagtttgctatgtgtattaaatgtgtataaccttatatatttatagtaacctaatgattcaatcacaaagtttccatgcaaatacaacataaacgtcaaataaaaaaatatacgagagggagaagtagttctatctttctatctactatcactatacagcttggaaaacgttatattagtaaccgtcatctgaattgttagtaaggttaaagttccaagcaagata
gi|5 : ttatgaatggattattatgacaataaatataatgaatgtttatatgttTTACATGGTTAGTAGCTT---------AGAATGTCAGCTGT--TTTTTGATGATTGTGAGAAAAGTAATACATTCAAGCCTTTG-----------------TAATTCATTT----AT---------CATGAAAC-TTTATTTGTTTTC-ACCACTTTTAGTT------TGAAAGGTGAACATGAA--T--TTATATTTTTT----CATTGCA---TAAA----A-T-ACGGCAGTTTGCGGATGAATCTTTAGTACGACACCGCGTACTGGCGAATTACCTACAaataggctggcctttatttctgttcgacacaggctactaacgaggtcaattatttatcatgaaatactatttgttttcatcacttttcgtttaaacatcaatttatattttgtcatagcactacctctttaacaaa
gi|7 : GTTAGTAGCTT---------AGGATAGCAGCTGAG-TTTTAG-CGAGCGTAAGAAAAGTAATAAATGCGAGCCATTT------ACGAGC-A-TTTATTTCTTTTCGTTACGAGCCAGAAGGTGAAAgcaaagaaataattcgataatcgaactaatattaaagtggttttgggtttgctatgagtatttaatgtttctaacctaaatatatttgtttacctaatcatccagtcacaattttccataccaatacagtattgactctaaatatttaaaaatagatgagggggtgaggaaatagctctagatacctgcataatacagcttggaaaatatcttgctagttgcagtcagctatattttgatagtaaggttaaaagttgcatgataa
gi|3 : TTG-CGATTGTAAGAAAAATAATAGATGCGAGCCGATG------GCGACC-A-TATATTTCTTTTCGTCACGAGCC--AAAATAAAGCTGATATTataaaattatgtcatcgcattccgtttaacaaaatacggcaataagcggaagaataagttcgatttcgtgtgctggacaatcacctactacaaagaaataatttgttaatcgaaccaaatgttacaacggttttatgcatttaatgtttcttacctataacatttgttttacttaataattcagtcacaaaatttccttgcaaatatagcattaaccccaaatctaaaaaaa
gi|3 : tggacaagtgttgtcaactaaaacatatctctaCATGAAAC-ACTATTTGATTTC-ACCACTT---AT--------AAAAGGGGAAAATACA--TTAATAT-TTTGTCATTGCAT---------AAT-A---T-ATGACAGTTAGCAGATGAATCTTAATCACGACATCGCGTGCTGGCGAATAACCAACAActaaactactaaccatgtaatttatttttatcatgaaacactatttgatttcaccacttataaaaggggaaaatacattaatattttgtcattgcataatatatgacagttagcagatgaatcttaatcacgacatcgcgtgctggcgaataaccaacaaaaacgaaatagttcgttaaccaactgtgacagtggttttaggtttgccgtgtgtaataagtaatgtatttcttaccggaaaatatctgtttagtaccgtacctaatcatacaatcaaaacacttccttgccaatacagtattaactctatacttcaaaatagataaggggaaaagtaaaactggcggcgaacatgattcagcttggaaaactatttggctagtagaagttaactctattatgttagtaaatttgcatgatcaa
gi|4 : tggacaagtgttgtcaactaaaacatatctctattgcgattgtaagaaaaataatagatgcgagccgatggcgaccatatatttcttttcgtcacgagccaaaataaagctgatattctaaactactaaccatgtaatttatttttatCATGAGAC-ACCATTAGTTTTC-ACCACTTTTTGTT------TAAAAGGCAAACATAAATTT--ATAT-TTTGCCATTTCACTTCCCCTTTAAC-AAAGT-ACAGCAGAAAGCGGATaaacgaaatagttcgttaaccaactgtgacagtggttttaggtttgccgtgtgtaataagtaatgtatttcttaccggaaaatatctgtttagtaccgtacctaatcatacaatcaaaacacttccttgccaatacagtattaactctatacttcaaaatagataaggggaaaagtaaaactggcggcgaacatgattcagcttggaaaactatttggctagtagaagttaactctattatgttagtaaatttgcatgatcaa
gi|10 : attacatggttatagttttgaattttgatgatgtcagctgtattttggcgagtgtaagaaaaataataaataaagtaataaagaatcttctcgccacgagcccaaaatacagctgtcattccaagcaactaaccatgtactttatttatCATGAAAT-ACTATTTGTTTTC-ATCACTTTTCGTT------TAAA--C-----ATCAATTT--ATAT-TTTGTCATAGCACTACCTCTTTAAC-AAA-ctattgcgacagcgtcaaagaaatagttcgtggttttgagtttgctatgtgtattaaatgtgtataaccttatatatttatagtaacctaatgattcaatcacaaagtttccatgcaaatacaacataaacgtcaaataaaaaaatatacgagagggagaagtagttctatctttctatctactatcactatacagcttggaaaacgttatattagtaaccgtcatctgaattgttagtaaggttaaagttccaagcaagata
gi|8 : ttatgaatggattattatgacaataaatataatgaatgtttatatgttattacatggttagtagattagaaagtcatttgtattttggcgaaataggctggcctttatttctgttcgacacaggctactaacgaggtcaattatttatAAC-ACCATTGGTTTTTTACTAATTTTTGTT------TAAAAGGCGAACATAAATTT--ATAT-TTTGTCATTGCACTTCCCCTTTAACAAAA-T-AC
gi|7 : cctgtgattttgtacagtagaattttatctttgtgtaacttatgataaagttttgggtaagaatgcatagtaaatagcaattacattgttagtagcttagaatggtagctgtactttagcaagtgttataaaagtaataaatgcgagccataggccagcatttattactttttgtcacgagccaaaatatagctgacattctaagctactaactatgtaattaatttatcatttCTTTTCGTTACGAGCCAGAAGGTGAAAATAAA-------AT-TATGTCATCGCATTCCGT-TTAACA-AAA-T-ACGGCAATAAGCGGAAGAAT---AAGTTCGATTTCGTGTGCTGGACAATCACCTACg
gi|9 : gttagtagcttaggatagcagctgagttttagcgagcgtaagaaaagtaataaatgcgagccatttacgagcatttatttTT------AAAAAGACGAAAATAAA--TTTATATTTTT-TCATTGCACTTCCCCTTTAAC-AAAAT-ACGGCAGTTAGCAGATGAATCTTAGGAACGTCGTTACGTGCTGACGAATCACCTATAtacaaagaaataatttgttaatcgaaccaaatgttacaacggttttatgcatttaatgtttcttacctataacatttgttttacttaataattcagtcacaaaatttccttgcaaatatagcattaaccccaaatctaaaaaaa
gi|17 : ttgTCATTCGGAACACCTCGTTC---------AA-----------TT--------C--------TCCGAGGAGTTCCGAATgcaagaaatagtccgataatcaaaacaaatattattgctttttttttctttttgctatgggtatcttatgttttttaactaaaatataggtttttacctaataactgaatcaaatgtttccttgcaaataccgtattaaccccgtcgattgaaattccatacatgtat
gi|15 : cATTCGGAACACCTCGCTCTATTCTCAAAA-------AAAGTG--------CGAGCAGTGCCCGAGGAGTTCC
gi|16 : ATTCGGAACACCTCGCTC---------AATTCATAGAAGGTGCGAGCAGTC--------CCCGAGGAGTTCC
gi|5 : CTACAGCAAAGAAATAATTCGATAATCGAACT-AA-TATTAAAG---------TGGTTTTGGGTTTGCTATGAGTA-T---TTAA-TGTTTCTAACCT-AA-ATATATTTGT----T--T-ACCTAATCATCCAGTCAC-AATTTTCCATACCAATA---CAGTATTG-----ACTCTAA-ATATTTAAAAATAGATGAGGGGGTGAGGAA----------ATA--GCTCTAGA------------------------TACCTGCATAATACAGCTTGGAAAAT-ATCTTGCTAG----TTGCAGTCAGCTATATT---TTGATAGTAAGGTTAAAAGTTGCATGATA
gi|7 : ttacatggttagtagcttagaatgtcagctgttttttgatgattgtgagaaaagtaatacattcaagcctttgtaattcatttatcatgaaactttatttgttttcaccacttttagtttgaaaggtgaacatgaatttatattttttcattgcataaaatacggcagtttgcggatgaatctttagtacgacaccgcgtactggcgaattacCTACTACAAAGAAATAATTTGTTAATCGAACC-AAATGTTACAA---------CGGTTTTA-----------TGCA-T---TTAA-TGTTTCTTACCT-A---TA-ACATTTG-TTT--T-ACTTAATAATTCAGTCACAAAATTTCCTTGCAAATA---TAGCATTA-----ACCCC-A-AA-TCTAAAAA
gi|9 : gttagtagcttaggatagcagctgagttttagcgagcgtaagaaaagtaataaatgcgagccatttacgagcatttatttcttttcgttacgagccagaaggtgaaaataaaattatgtcatcgcattccgtttaacaaaatacggcaataagcggaagaataagttcgatttcgtgtgctggacaatcacCTATAGCA-AGAAATAGTCCGATAATCAAAAC-AAATATTATTGCTTTTTTTTTCTTTTTG----CTATGGGTATC-T---TA---TGTTTTTTAACT-AAAATATAGGTTT----T--T-ACCTAATAACTGAATCA-AATGTTTCCTTGCAAATA---CCGTATTA-----ACCCC-aa
gi|6 : ttgttaaaaagacgaaaataaatttatattttttcattgcacttcccctttaacaaaatacggcagttagcagatgaatcttaggaacgtcgttacgtgctgacgaatcacTACAACAAACAAATAGTTCCATTATCGAACCAAA-TATTACgtcgattgaaattccatacatgtat
gi|3 : acatccttaagtgaatcaaatgtaagaataatatggtttgtaggttagcgtgtctgctgtctttgacgagtgtaagaaaagtaattaatgcaagcctttattcgtcgcaagccatgttacttatgtatcatgaaacaatcttatttttcaacactttttgttaaaaggtgaacataaattcatattttgtcaacgcacttcactttttacaaattacggcaattagcggatgaattttaagtacaaaatcgcatattggcgaatcacaAAATAGTTCGTTAACC-AAC-----TGTGACAG---------TGGTTTTAGGTTTGCCGTGTGTAATAAGTAATGTATTTCTTACCGGAAAATATCTGTTTAGTACCGT-ACCTAATCATACAATCAAAACACTTCCTTGCCAATA---CAGTATTA-----ACTCT-ATAC-TTCAAAA-TAGATAA---GGGGAAAAG----------TAA--A----ACTG-------------G--------CGGCGAACATGATTCAGCTTGGAAAACTATTTGGCTAG----TAGAAGTTAACTCTATT---ATGTTAGTAAAT-------TTGCATGATCAAatcaaagtttccttgtaaatactgtaatgcaataactccaaacctaaaaatagacgaggagcaaaagagtttccggagaaagagaattttcatcttctaacatataaaaacttggaaaatagtccgctgatagccgtaaactgtattaaatttaacgttgcattataaat
gi|4 : tggacaagtgttgtcaactaaaacatatctctattgcgattgtaagaaaaataatagatgcgagccgatggcgaccatatatttcttttcgtcacgagccaaaataaagctgatattctaaactactaaccatgtaatttatttttatcatgaaacactatttgatttcaccacttataaaaggggaaaatacattaatattttgtcattgcataatatatgacagttagcagatgaatcttaatcacgacatcgcgtgctggcgaataaccaacaaaaacgG---------TGGTTTTGAGTTTGCTATGTGTA-T---TAAA-TGTGTATAACCT---TATATATTTATAGTA-----ACCTAATGATTCAATCACAAAGTTTCCATGCAAATA---CAACATAA-----ACGTC-A-AA-TAAAAAAATATACGA---G----AGGG----------AGA--A----GTAGTTCTATCTTTCTAT--------CTACTATCACTATACAGCTTGGAAAAC-GTTATATTAG----TAACCGTCATC-----TGAATTGTTAGTAAGGTT-AAAGTTCCA
gi|11 : attacatggttatagttttgaattttgatgatgtcagctgtattttggcgagtgtaagaaaaataataaataaagtaataaagaatcttctcgccacgagcccaaaatacagctgtcattccaagcaactaaccatgtactttatttatcatgagacaccattagttttcaccactttttgtttaaaaggcaaacataaatttatattttgccatttcacttcccctttaacaaagtacagcagaaagcggatctattgcgacagcgtcaaagaaatagttcTGCA-T---TATT-TGTTT-TTGTTT-AATTTATTTGTAT--TAT--T-T----ATTTTCTCGTCACA--GTTGA--TATAAATAGATTAGT-TTGGAAA-ACTCC-A-AA-TCTAAAAATAGATAA-----T-AAGAA----------AAA--A----GTAGTTCCG--------G--------CTACTAGCATAATACAGCTTGGAAAAT-ATTATGCTAG----TAGCAGTTGGCTGTATT---ATGTTAGTACAGTTAAAGGTTGCATGATagcaagata
gi|6 : -ACCAAATA-TTACATCA--AAGTTTCCTTGTAAATA---CTGTAATGCAATAACTCC-A-AA-CCTAAAAATAGACGA---GGAGCAAAAGAGTTTCCGGAGA--A----AGAG-------------AATTTTCATCTTCTAACATATAAAAACTTGGAAAAT-A----GTCCGCTGATAGCCGTAAACTGTATTAAA------------TTTAACGTTGCATTATAAATa
Alignments
lowQualScore : 111111111 22222222 4444444444444444444444444444 111111 1 66666666666666666666666666666666666666666 2222 11111 1111111111 11111 11 111111111111 33333333333333333333 666666666666666666666666 2222 1111
lowQualScore : 3 4 2 0 7 3 111111111 2 4 2 0 33333333 2 4 2 55 9999999999999999999999999999 4 1 4 2 111111 3 1 4 0 4 2 55 4 6 4 1 44444444444444444444444444444444444444444 2222 5 888 888 3 1 99999 0 7 5555555555 0 1 0 888 66 1 22222 1 1 66 0 66 777 1 0 444444444444 66 1 33333333333333333333 888888888888888888888888 5 55 0 3333 7 5 2222
lowQualScore : . . . . . . ......... . . . . ........ . . . .. ............................ . . . . ...... . . . . . . .. . . . . ......................................... .... . ... ... . . ..... . . .......... . . . ... .. . ..... . . .. . .. ... . . ............ .. . .................... ........................ . .. . .... . . ....
lowQualScore : 0 0 5 7 3 0 444444444 7 4 1 7 00000000 0 5 5 44 4444444444444444444444444444 0 0 0 6 555555 0 0 0 5 8 5 44 0 0 0 0 44444444444444444444444444444444444444444 4444 7 888 888 6 4 55555 8 6 7777777777 7 6 8 888 99 4 11111 1 0 22 2 99 111 0 9 333333333333 99 4 99999999999999999999 000000000000000000000000 7 33 4 4444 9 1 1111
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTACGTTGGCATGGACTATTTGCTCAGTACGATTGTTGNAATGTTACGCATGCCATAGTGCTGCTTTCAGAACAAAATGATGCAATGCTCTATGTTNAGTTACTGTTGCTAAGGTTGTCGCTGAAGATGTAATTGAAGACTGCTTTCACGTGGAGAACCCAATCTCGCCNACTTCTGTGGGATTTACGAAGTACTCCACCCAGGGCACTAGTTCACCCTCGGTACCCATAACATTCACTCACGATGTATACCTTCTTGGGTGGAAACGGGGTAATTATCGAGGTAACACATACTTTAATTGAAATGCGCGTAATGTATAATACATCACTAGCATAACAATATATAAGAATTACATGGTTAGTAGCTTAGAAT---------GTCAGCTGTA-TTTTGGCGAGTGTAAGAAAAGTAATAAATGCGAGCCNTTGGCNAGCATTTATTTCTTTTCGCCACGAGC------------CA----A---------CATGAAACAC-TATTNGTTTTC-ACCACTTTTCGTT------TAAAAGGCGAANATAAATTTATAT-TTTGTCATCGCACTTCNCCTTTAAC-AAA-TACGGCAGTTAGCGGATGAATCTTAAGNACGACATCGCGTGCTGGCGAATCACCTACAACATCATTCGGAACACCTCGCTC---------AA-------AAAGTG--------C--------CCCGAGGAGTTCCGAAT-G--C-TACAGC---AAA---GAAATAGTTCGATAATCGAACC-AA-TATTACGGTGGTTTTGAGTTC-----GCTATGTGTATTAA---ATGT--TTCTTACCT-AA-ATATATGTNTA-TAT--T-A-CCTAATNATTCAATCACAAAGTTTCCTTGCAAATACAGTA--T----T----AACTCCAA--ATCTAAAAATAGATGAGGNG---AAGA----------AAAAAG---TA-----G-------------GCTACTAGCATAATACAGCTTGGAAAAC-ATTANGCTAGTAGCAGTCAACTGTATTAAAATGTTAGTAAAGTTAAAAGTT----GCATGATAAAT
Reference ( family-4525 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTACGTTGGCATGGACTATTTGCTCAGTACGATTGTTGAAATGTTACACATGCCATAGTGCTGCTTTCAGAACAAAATGATGCAATGCTCTATATTTAGTTACTGTTGCTAAGGTTGTCGCTGAAGATGTAATTGAAGACTGCTTTCACGTGGAGAACCCAATCTCGCCCACTTCTGTGGGATTTACGAAGTACTTCACCCAGGGCACTAGTTCACCCTCGGTACCCATAACATTCACTCACGATGTATACCTTCTTGGGTGGAAACGGGGTAATTATCGAGGTAACACATACTTTAATTGAAATGCGCGTAATGTATAATACATCACTAGCATAGCAATATATAAGAATTACATGGTTAGTAGCTTAGAAT---------GTCAGCTGTA-TTTTGGCGAGTGTAAGAAAAGTAATAAATGCGAGCCNTTGGCGAGCATTTATTTCTTTTCGTCACGAGC------------CA----A---------CATGAAACAC-TATTNGTTTTC-ACCACTTTTCGTT------TAAAAGGCGAANATAAATTTATAT-TTTGTCATCGCACTTCNCCTTTAAC-AAA-TACGGCAGTTAGCGGATGAATCTTAAGNACGACATCGCGTGCTGGCGAATCACCTACAACATCATTCGGAACACCTCGCTC---------AA-------AAAGTG--------C--------CCCGAGGAGTTCCGAAT-G--C-TACAGC---AAA---GAAATAGTTCGATAATCGAACC-AA-TATTACGGTGGTTTTGGGTTC-----GCTATGTGTATTAA---ATGT--TTCTTACCT-AATATATATGTNTA-TAT--T-A-CCTAATNATTCAATCACAAAGTTTCCTTGCAAATACAGTA--T----T----AACTCCAA--ATCTAAAAATAGACGAGGTG---AAGA----------AAAAAG---NA-----G-------------GCTACTAGCATAATACAGCTTGGAAAAC-ATTATGCTAGTAGCAGTCAACTGTATTAAAATGTTAGTAAAGTTAAAAGTT----GCATGATAAAT
gi|1 : ATTTACGTTGGCATGGACTATTTGCTCAGTACGATTGTTGCAATGTTACGCATGCCATAGTGCTGCTTTCAGAACAAAATGATGCAATGCTCTATGTTAAGTTACTGTTGCTAAGGTTGTCGCTGAAGATGTAATTGAAGACTGCTTTCACGTGGAGAACCCAATCTCGCCGACTTTTGTGGGATTTACGAAGTACTCCACCCAGGGCACTAGTTCACCCTCGGTACCCATAACATTCACTCACGATGTATACCTTCTTGGATGGAAACGGGGTAATTATCGAGGTAACACATACTTTAATTGAAATGCGCGTAATGTATAATACATCACTAGCATAACAATATATAAAAATTACATGGCTAGTAGCTTATAAT---------GTCAGATGTA-TTTTTGCGAGTAAAAGAAAAGTAACAGATGCGAGCCTTTGGCGAGTAGTTATTTCTTTTCTCCATGAGC------------CA----A---------CATGAAACGC-TATTGGTTTTC-ACCACTTTTCATT------TAAAAGCTGAAAATAAA--CATATGTTTGTCATCGCATTACACCTTAAAC-AAA-TACAGCAGTTAACGGGTGAATTTTAAGAATGACATCGCGTGCTGGTGAATCACCTACAATATCATTCGGAACACCTCGCTC---------AA-------AAAGTG--------C--------CCAAAGGAGTTCCGGAT-G--C-TACAGC---ATA---TAAATAGTCCGATAATCGAACC-AA-TATTACGGTGGTTTTGAGATC-----GATAGGTGTATTAA---TTAT--TTCTTACCT-AATATATATATATA-TAT--T-A-CCAAATGGTTCAATCACAAAGTTTCCTTGCAAATATAGTA--T----T----GACTCCAA--TTCCAAAAATAGATGAGGTG---AAAA----------AAAAAG---GA-----G-------------GCTACTAGCATAATACAGCTTGGTAAAC-ATGAGGTCAGTAGCAGTCAACTATATTAAAATGTTAGTAAACTTAAAAGTT----GCATGATGAAT
gi|10 : tcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATTACATGGTTAGTAGATTAGAAA---------GTCATTTGTA-TTTTGGCGA-------------AATA-------------GGCTGGCCTTTATTTCTGTTCGACACAGGCTACTAACGAGGTCA----ATTATTTAT-CATGAAATAC-TATTTGTTTTC-ATCACTTTTCGTT------TA-------AACATCAATTTATAT-TTTGTCATAGCACTACCTCTTTAAC-AAA-
gi|11 : ttatgaatggattattatgacaataaatataatgaatgtttatatgttTGCATTAT---TTGT--TT-TTGTTT-AATTTATTTGTAT--TAT--T-----TATTTTCTCG-TCACA--GTTGA--TATAAATAGATTAGTT----TGGAAAACTCCAA--ATCTAAAAATAGATAA--T----AAGA----------AAAAAG---TA-----GTTCCG--------GCTACTAGCATAATACAGCTTGGAAAAT-ATTATGCTAGTAGCAGTTGGCTGTATT---ATGTTAGTACAGTTAAAGGTT----GCATGATA
gi|12 : ATTTATAAGAATTACATGGTTAGTAGCTTAGAAT---------GGCAGCTGTA-TTTTGGCGA
gi|13 : atttgttaatcgtaatgtaaacgggcaaagcccggctttagatattgcaaatgagaatgatttaaattttcattttttctgAAGAATTACTTGGTTAGTAGCTTAAAAA---------GTCAGCAGTA-TTTTGGCGAGTGTAAGAAAAGTGATAAATGCAAG
gi|14 : catcatttaatgattcAACTACACGGTTAGTAGCTTAGAAT---------GTCAGCTGTA-TTTTGGTGAGTGTAAGAAAAGTAATAAATGCGAGact
gi|15 : ATTCGGAACACCTCGCTCTATTCTCAAAA-------AAAGTG--------CGAGCAGTGCCCGAGGAGTTCC
gi|16 : ATTCGGAACACCTCGCTC---------AATTCATAGAAGGTGCGAGCAGTC--------CCCGAGGAGTTCC
gi|17 : TCATTCGGAACACCTCGTTC---------AA-----------TT--------C--------TCCGAGGAGTTCCGAAT-
gi|2 : cATTTACGTTGGCATGGACTATTTGCTCAGTACGATTGTTGAAATGTTACACATGCCATAGTGCTGCTTTCAGAACAAAATGATGCAATGCTCTATATTTAGTTACTGTTGCTAAGGTTGTCGCTGAAGATGTAATTGAAGACTGCTTTCACGTGGAGAACCCAATCTCGCCCACTTCTGTGGGATTTACGAAGTACTTCACCCAGGGCACTAGTTCACCCTCGGTACCCATAACATTCACTCACGATGTATACCTTCTTGGGTGGAAACGGGGTAATTATCGAGGTAACACATACTTTAATTGAAATGCGCGTAATGTATAATACATCACTAGTATAACAATATATAAGAATTACATGGCTAGTAGCTTATAAT---------GTCAGATGTATTTTTTTCGAGTAAAAGAAAAGTAACAGATGCGAGCCTTTGGCGAGTAGTTATTTCTTTTCGCCATGAGC------------CA----A---------CATGAAACGC-TATTGTTTTTC-ACTACTTTTCATT------TAAAAGCTGAGAATAAACATATGT-TT--TCATCGCATTTCACCTTTAAC-AAA-TACAGCAGTTAACGGGTGAATTTTAAGAATGACATCGCGTGCTGGTGAATCACCTACAATATCATTTGGAACACCTCGCTC---------AA-------AAAGTG--------C--------CCAAAGGAGTTCCGAAT-G--C-TACAGC---ATA---TAAATAGTCCGATAATCGAATC--------ACGGTGGTTTTGAGATC-----GATAAGTGTATTAA---ATAT--TTCTTACCT-AATATATATATATA-TAT--TAA-CCAAATGGTTCAATCACAAAGTTTCCTTGCAAATATAGTA--T----T----AGCTCCAA--TTCCAAAAATAGATGAGGTG---AA-A----------AAAAAG---TAGGT--G-------------GCTACTAGCATAATACAGCTTGGTAAAC-ATTAGGTCAGTAGCAGTCAACTATATTAAAATGTTAGTAAACTTAAAAGTT----GCATGATGA
gi|3 : ctcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAATTACATGGTTAGTAGTTTAGAAT---------ATCAGCTTTA-TTTTGGCTCGTG-ACGAAAAGAAATATATGGTCGCCATCGGCTCGCATCTATTATTTTTC-TTACAATCG-----------CA----A---------TA-GAGATATGTTTTAGTTGAC-AACACTTGTC
gi|3 : tgCTCTA-TT---GCGATTGTAAGAAAAATAATAGATGCGAGCCGATGGCGACCATATATTTCTTTTCGTCACGAGC------------CA----A---------AATAAAGCtatttttatcatgaaacactatttgatttcaccacttataaaaggggaaaatacattaatattttgtcattgcataatatatgacagttagcagatgaatcttaatcacgacatcgcgtgctggcgaataaccaacaaaaacgaaatagttcgttaaccaactgtgacagtggttttaggtttgccgtgtgtaataagtaatgtatttcttaccggaaaatatctgtttagtaccgtacctaatcatacaatcaaaacacttccttgccaatacagtattaactctatacttcaaaatagataaggggaaaagtaaaactggcggcgaacatgattcagcttggaaaactatttggctagtagaagttaactctattatgttagtaaatttgcatgatcaa
gi|3 : tggacaagtgttgtcaactaaaacatat---------CATGAAACAC-TATTTGATTTC-ACCACTTAT-----------AAAAGGGGAAAATACATTAATAT-TTTGTCATTGCA---------TAAT-A---TATGACAGTTAGCAGATGAATCTTAATCACGACATCGCGTGCTGGCGAATAACCAACAAtgatattctaaactactaaccatgtaatttatttttatcatgaaacactatttgatttcaccacttataaaaggggaaaatacattaatattttgtcattgcataatatatgacagttagcagatgaatcttaatcacgacatcgcgtgctggcgaataaccaacaaaaacgaaatagttcgttaaccaactgtgacagtggttttaggtttgccgtgtgtaataagtaatgtatttcttaccggaaaatatctgtttagtaccgtacctaatcatacaatcaaaacacttccttgccaatacagtattaactctatacttcaaaatagataaggggaaaagtaaaactggcggcgaacatgattcagcttggaaaactatttggctagtagaagttaactctattatgttagtaaatttgcatgatcaa
gi|3 : tggacaagtgttgtcaactaaaacatatctctattgcgattgtaagaaaaataatagatgcgagccgatggcgaccatatatttcttttcgtcacgagccaaaataaagctgatattctaaactactaaccatgtaatttatttttatCAAC---AAAAACGAAATAGTTCGTTAACC-AAC-----TGTGACAGTGGTTTTAGGTTT-----GCCGTGTGTAATAAGTAATGTATTTCTTACCGGAAAATATCTGTTTAGTACCGT-A-CCTAATCATACAATCAAAACACTTCCTTGCCAATACAGTA--T----T----AACTCTAT--ACTTCAAAATAGATAAGGGG---AAAA----------GTAAAA---CT-----G-------------GCGGCGAACATGATTCAGCTTGGAAAACTATTTGGCTAGTAGAAGTTAACTCTATT---ATGTTAGTAAA-T------TT----GCATGATCAAaaacgaaatagttcgttaaccaactgtgacagtggttttaggtttgccgtgtgtaataagtaatgtatttcttaccggaaaatatctgtttagtaccgtacctaatcatacaatcaaaacacttccttgccaatacagtattaactctatacttcaaaatagataaggggaaaagtaaaactggcggcgaacatgattcagcttggaaaactatttggctagtagaagttaactctattatgttagtaaatttgcatgatcaa
gi|4 : tggacaagtgttgtcaactaaaacatatctctattgcgattgtaagaaaaataatagatgcgagccgatggcgaccatatatttcttttcgtcacgagccaaaataaagctgatattctaaactactaaccatgtaatttatttttatcatgaaacactatttgatttcaccacttataaaaggggaaaatacattaatattttgtcattgcataatatatgacagttagcagatgaatcttaatcacgacatcgcgtgctggcgaataacATTACATGGTTA-TAGTTTTGAATTTTGATGATGTCAGCTGTA-TTTTGGCGAGTGTAAGAAAAATAATAAATA-AAGTAAT---AAAGAA------TCTTCTCGCCACGAGC------------C
gi|4 : ATAAATAA--AGTACATGGTTAGTTGCTTGGAAT---------GACAGCTGTA-TTTTGGcaaaatacagctgtcattccaagcaactaaccatgtactttatttatcatgagacaccattagttttcaccactttttgtttaaaaggcaaacataaatttatattttgccatttcacttcccctttaacaaagtacagcagaaagcggatctattgcgacagcgtcaaagaaatagttcgtggttttgagtttgctatgtgtattaaatgtgtataaccttatatatttatagtaacctaatgattcaatcacaaagtttccatgcaaatacaacataaacgtcaaataaaaaaatatacgagagggagaagtagttctatctttctatctactatcactatacagcttggaaaacgttatattagtaaccgtcatctgaattgttagtaaggttaaagttccaagcaagata
gi|4 : attacatggttatagttttgaattttgatgatgtcagctgtattttggcgagtgtaagaaaaataataaataaagtaataaagaatcttctcgccacgagc---------CATGAGACAC-CATTAGTTTTC-ACCACTTTTTGTT------TAAAAGGCAAACATAAATTTATAT-TTTGCCATTTCACTTCCCCTTTAAC-AAAGTACAGCAGAAAGCGGATcatgagacaccattagttttcaccactttttgtttaaaaggcaaacataaatttatattttgccatttcacttcccctttaacaaagtacagcagaaagcggatctattgcgacagcgtcaaagaaatagttcgtggttttgagtttgctatgtgtattaaatgtgtataaccttatatatttatagtaacctaatgattcaatcacaaagtttccatgcaaatacaacataaacgtcaaataaaaaaatatacgagagggagaagtagttctatctttctatctactatcactatacagcttggaaaacgttatattagtaaccgtcatctgaattgttagtaaggttaaagttccaagcaagata
gi|4 : attacatggttatagttttgaattttgatgatgtcagctgtattttggcgagtgtaagaaaaataataaataaagtaataaagaatcttctcgccacgagcccaaaatacagctgtcattccaagcaactaaccatgtactttatttatT-G--C-GACAGCGTCAAA---GAAATAGTTCG-----------------------TGGTTTTGAGTTT-----GCTATGTGTATTAA---ATGT--GTATAACCT-----TATATATTTA-TAG--T-AACCTAATGATTCAATCACAAAGTTTCCATGCAAATACAACA--T----A----AACGTCAA--ATAAAAAAATATACGAG-------AGG----------GAGAAG---TA-----GTTCTATCTTTCTATCTACTATCACTATACAGCTTGGAAAAC-GTTATATTAGTAACCGTCATCTG-----AATTGTTAGTAAGGTT-AAAGTTCCAAGCAAGATActattgcgacagcgtcaaagaaatagttcgtggttttgagtttgctatgtgtattaaatgtgtataaccttatatatttatagtaacctaatgattcaatcacaaagtttccatgcaaatacaacataaacgtcaaataaaaaaatatacgagagggagaagtagttctatctttctatctactatcactatacagcttggaaaacgttatattagtaaccgtcatctgaattgttagtaaggttaaagttccaagcaagata
gi|5 : attacatggttatagttttgaattttgatgatgtcagctgtattttggcgagtgtaagaaaaataataaataaagtaataaagaatcttctcgccacgagcccaaaatacagctgtcattccaagcaactaaccatgtactttatttatcatgagacaccattagttttcaccactttttgtttaaaaggcaaacataaatttatattttgccatttcacttcccctttaacaaagtacagcagaaagcggatctatTTACATGGTTAGTAGCTTAGAAT---------GTCAGCTGTT-TTTTGATGATTGTGAGAAAAGTAATACATTCAAGCCTTTG---------TAATTCATTT-----------------------A----T---------CATGAAACTT-TATTTGTTTTC-ACCACTTTTAGTT------TGAAAGGTGAACATGAATTTATAT-TTTTTCATTGCA---------TA---AAA-TACGGCAGTTTGCGGATGAATCTTTAGTACGACACCGCGTACTGGCGAATTACCTACAGCA
gi|5 : CGAAT-TACC-TACAGC---AAA---GAAATAATTCGATAATCGAACT-AA-TATTAAAGTGGTTTTGGGTTT-----GCTATGAGTATTTA---ATGT--TTCTAACCT-AA-ATATATTTGT----T--T-A-CCTAATCATCCAGTCAC-AATTTTCCATACCAATACAGTA--T----T----GACTCTAAATATTTAAAAATAGATGAGGGGGT-GAGG----------AAATAGCTCTA-----G-------------A-TACCTGCATAATACAGCTTGGAAAAT-ATCTTGCTAGTTGCAGTCAGCTATATT---TTGATAGTAAGGTTAAAAGTT----GCATGATAAaagaaataattcgataatcgaactaatattaaagtggttttgggtttgctatgagtatttaatgtttctaacctaaatatatttgtttacctaatcatccagtcacaattttccataccaatacagtattgactctaaatatttaaaaatagatgagggggtgaggaaatagctctagatacctgcataatacagcttggaaaatatcttgctagttgcagtcagctatattttgatagtaaggttaaaagttgcatgataa
gi|6 : ttacatggttagtagcttagaatgtcagctgttttttgatgattgtgagaaaagtaatacattcaagcctttgtaattcatttatcatgaaactttatttgttttcaccacttttagtttgaaaggtgaacatgaatttatattttttcattgcataaaatacggcagtttgcggatgaatctttagtacgacaccgcgtactggCAA-ATGTAAGAATAATATGGTTTGTAGGTTAGCGT---------GTCTGCTGT--CTTTGACGAGTGTAAGAAAAGTAATTAATGCAAGCC-----------TTTA------TTCGTCGCAAGC------------CATGTTACTTATGTATCATGAAACAA-TCTTATTTTTC-AACACTTTTTG-T------TAAAAGGTGAACATAAATTCATAT-TTTGTCAACGCACTTCACTTTTTAC-AAATTACGGCAATTAGCGGATGAATTTTAAGTACAAAATCGCATATTGGCGAATCACATACAACA
gi|6 : acatccttaagtgaatCGAATCA--CATACAAC---AAA---CAAATAGTTCCATTATCGAACCAAA-TATTACaacaaatagttccattatcgaaccaaatattacatcaaagtttccttgtaaatactgtaatgcaataactccaaacctaaaaatagacgaggagcaaaagagtttccggagaaagagaattttcatcttctaacatataaaaacttggaaaatagtccgctgatagccgtaaactgtattaaatttaacgttgcattataaat
gi|6 : acatccttaagtgaatcaaatgtaagaataatatggtttgtaggttagcgtgtctgctgtctttgacgagtgtaagaaaagtaattaatgcaagcctttattcgtcgcaagccatgttacttatgtatcatgaaacaatcttatttttcaacactttttgttaaaaggtgaacataaattcatattttgtcaacgcacttcactttttacaaattacggcaattagcggatgaattttaagtacaaaatcgcatattggCAAAGTTTCCTTGTAAATACTGTAA-TGCAAT----AACTCCAA--ACCTAAAAATAGACGAGGAGCAAAAGAGTTTCCGGAGAAAGAG---AATTTTCA-------------TCTTCTAACATATAAAAACTTGGAAAAT-AGTCCGCTGATAGCCGTAAACTGTATTAAA------------TTTAACGTT----GCATTATAAATatcaaagtttccttgtaaatactgtaatgcaataactccaaacctaaaaatagacgaggagcaaaagagtttccggagaaagagaattttcatcttctaacatataaaaacttggaaaatagtccgctgatagccgtaaactgtattaaatttaacgttgcattataaat
gi|7 : acatccttaagtgaatcaaatgtaagaataatatggtttgtaggttagcgtgtctgctgtctttgacgagtgtaagaaaagtaattaatgcaagcctttattcgtcgcaagccatgttacttatgtatcatgaaacaatcttatttttcaacactttttgttaaaaggtgaacataaattcatattttgtcaacgcacttcactttttacaaattacggcaattagcggatgaattttaagtacaaaatcgcatattggcgaatcacatacaacaaacaaatagttccattatcgaaccaaatattacatGTTAGTAGCTTAGGAT---------AGCAGCTGAG-TTTTAGCGAGCGTAAGAAAAGTAATAAATGCGAGC----------CATTTA-------------CGAGC----------------------------------------ATTTATTT-------CTTTTCGTTACGAGCCAGAAGGTGAAAATAAAATTAT------GTCATCGCATTCCG--TTTAAC-AAAATACGGCAATAAGCGGAAGAAT---AAGTTCGATTTCGTGTGCTGGACAATCACCTACTACA
gi|7 : --C-TACTAC---AAA---GAAATAATTTGTTAATCGAACC-AAATGTTACAACGGTTTTA----------------TGCATTTA---ATGT--TTCTTACCT-A---TA-ACATTTG-TTT--T-A-CTTAATAATTCAGTCACAAAATTTCCTTGCAAATATAGCA--T----T----AACCCCAA--ATCTAAAAAaagaaataatttgttaatcgaaccaaatgttacaacggttttatgcatttaatgtttcttacctataacatttgttttacttaataattcagtcacaaaatttccttgcaaatatagcattaaccccaaatctaaaaaaa
gi|8 : gttagtagcttaggatagcagctgagttttagcgagcgtaagaaaagtaataaatgcgagccatttacgagcatttatttcttttcgttacgagccagaaggtgaaaataaaattatgtcatcgcattccgtttaacaaaatacggcaataagcggaagaataagttcgatttcgtgtgctggacaatcacGCATAGTAA---ATAGCAATTACATTGTTAGTAGCTTAGAAT---------GGTAGCTGTA-CTTTAGCAAGTGTTATAAAAGTAATAAATGCGAGCCATAGGCCAGCATTTATTACTTTTTGTCACGAGC------------CA----A---------AATaa
gi|8 : cctgtgattttgtacagtagaattttatctttgtgtaacttatgataaagttttgggtaagaatAATTACATAGTTAGTAGCTTAGAAT---------GTCAGCTATA-TTTTGGCTCGTG-ACAAAAAGTAATAAATGCTGGCCTATGGCTCGCATTTATTACTTTTatagctgacattctaagctactaactatgtaattaatttatcatttaacaccattggttttttactaatttttgtttaaaaggcgaacataaatttatattttgtcattgcacttcccctttaacaaaatacg
gi|8 : cctgtgattttgtacagtagaattttatctttgtgtaacttatgataaagttttgggtaagaatgcatagtaaatagcaattacattgttagtagcttagaatggtagctgtactttagcaagtgttatAACAC-CATTGGTTTTTTACTAATTTTTGTT------TAAAAGGCGAACATAAATTTATAT-TTTGTCATTGCACTTCCCCTTTAACAAAA-TACGaatttatcatttaacaccattggttttttactaatttttgtttaaaaggcgaacataaatttatattttgtcattgcacttcccctttaacaaaatacg
gi|9 : cctgtgattttgtacagtagaattttatctttgtgtaacttatgataaagttttgggtaagaatgcatagtaaatagcaattacattgttagtagcttagaatggtagctgtactttagcaagtgttataaaagtaataaatgcgagccataggccagcatttattactttttgtcacgagccaaaatatagctgacattctaagctactaactatgtaattaatttatcatttTTGTT------AAAAAGACGAAAATAAATTTATAT-TTTTTCATTGCACTTCCCCTTTAAC-AAAATACGGCAGTTAGCAGATGAATCTTAGGAACGTCGTTACGTGCTGACGAATCACCTATAGCA
gi|9 : CGAAT-CACC-TATAGC---AA----GAAATAGTCCGATAATCAAAAC-AAATATTAT--TGCTTTTTTTTTCTTTTTGCTATGGGTATCTT---ATGT--TTTTTAACT-AAAATATAGGTTT----T--T-A-CCTAATAACTGAATCA-AATGTTTCCTTGCAAATACCGTA--T----T----AACCCCagaaatagtccgataatcaaaacaaatattattgctttttttttctttttgctatgggtatcttatgttttttaactaaaatataggtttttacctaataactgaatcaaatgtttccttgcaaataccgtattaaccccgtcgattgaaattccatacatgtat
Alignments
lowQualScore : 1 111111111 1111111111 33333333333333333333333 1111111 1 66666666666666666666666666666666666666666 2222 11111 111111 11111111 2222222 111111111111 222222222222222 7777777777777777777777777777777 2222 1111
lowQualScore : 1 1 1 2 1 1 111111111 2 4 2 0 3333333333 2 3 3 0 2 99 33333333333333333333333 4 1 4 2 3333333 3 1 4 0 4 2 55 4 2 4 4 1 44444444444444444444444444444444444444444 2222 5 888 888 3 1 99999 0 7 6 1 444444 0 1 0 888 66 1 55555555 0 1 1 2222222 5 5 1 0 444444444444 66 3 666666666666666 0 2222222222222222222222222222222 5 22 0 3333 7 5 2222
lowQualScore : . . . . . . ......... . . . . .......... . . . . . .. ....................... . . . . ....... . . . . . . .. . . . . . ......................................... .... . ... ... . . ..... . . . . ...... . . . ... .. . ........ . . . ....... . . . . ............ .. . ............... . ............................... . .. . .... . . ....
lowQualScore : 0 0 0 0 4 4 444444444 7 4 1 7 6666666666 3 6 6 3 0 88 22222222222222222222222 0 0 0 6 9999999 0 0 0 5 8 5 44 0 0 4 0 0 44444444444444444444444444444444444444444 4444 7 888 888 6 4 55555 8 6 0 9 777777 7 6 8 888 99 4 22222222 2 1 0 0000000 0 0 0 9 333333333333 99 0 777777777777777 3 9999999999999999999999999999999 7 99 4 4444 9 1 1111
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTACGTTGGCATGGACTATTTGCTCAGTACGATTGTTGNAATGTTACGCATGCCATAGTGCTGCTTTCAGAACAAAATGATGCAATGCTCTATGTTNAGTTACTGTTGCTAAGGTTGTCGCTGAAGATGTAATTGAAGACTGCTTTCACGTGGAGAACCCAATCTCGCCNACTTCTGTGGGATTTACGAAGTACTCCACCCAGGGCACTAGTTCACCCTCGGTACCCATAACATTCACTCACGATGTATACCTTCTTGGGTGGAAACGGGGTAATTATCGAGGTAACACATACTTTAATTGAAATGCGCGTAATGTATAATACATCACTAGCATAACAATATATAAGAATTACATGGTTAGTAGCTTAGAAT---------GTCAGCTGTA-TTTTGGCGAGTGTAAGAAAAGTAATAAATGCGAGCCNTTG------GCNAGC-AT-TTATTTCTTTTCGCCACGAGC------------CAA--------CATGAAACAC-TATTNGTTTTC-ACCACTTTTCGTT------TAAAAGGCGAANATAAATTTATAT-TTTGTCATCGCACTTCNCCTTTAAC-AAA-T-ACGGCAGTTAGCGGATGAATCTTAAGNACGACATCGCGTGCTGGCGAATCACCTACAACATCATTCGGAACACCTCGCTC---------AA-------AAAGTG--------C--------CCCGAGGAGTTCCGAAT-G--C-TACAGC---AAA---GAAATAGTTCGATAATCGAACC-AA-TATTACGGTGGTTTTGAGTTC-----GCTATGTGTATTAA---ATGT--TTCTTACCT--A-A-A-TATATGTTTA-TAT--T-A-CCTAATNATTCAATCACAAAGTTTCCTTGCAAATACAGTA--T----T----AACTCCAA--ATCTAAAAATAGATGAGGGG---AAGA--------AAAAAG---TA---G-------------G--------CTACTAGCATAATACAGCTTGGAAAAC-ATTANGCTAGTAGCAGTCAACTGTATTAAAATGTTAGTAAAGTTAAAAGTT----GCATGATAAAT
Reference ( family-4525 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTACGTTGGCATGGACTATTTGCTCAGTACGATTGTTGNAATGTTACGCATGCCATAGTGCTGCTTTCAGAACAAAATGATGCAATGCTCTATGTTNAGTTACTGTTGCTAAGGTTGTCGCTGAAGATGTAATTGAAGACTGCTTTCACGTGGAGAACCCAATCTCGCCNACTTCTGTGGGATTTACGAAGTACTCCACCCAGGGCACTAGTTCACCCTCGGTACCCATAACATTCACTCACGATGTATACCTTCTTGGGTGGAAACGGGGTAATTATCGAGGTAACACATACTTTAATTGAAATGCGCGTAATGTATAATACATCACTAGCATAACAATATATAAGAATTACATGGTTAGTAGCTTAGAAT---------GTCAGCTGTA-TTTTGGCGAGTGTAAGAAAAGTAATAAATGCGAGCCNTTG------GCNAGC-AT-TTATTTCTTTTCGCCACGAGC------------CAA--------CATGAAACAC-TATTNGTTTTC-ACCACTTTTCGTT------TAAAAGGCGAANATAAATTTATAT-TTTGTCATCGCACTTCNCCTTTAAC-AAA-T-ACGGCAGTTAGCGGATGAATCTTAAGNACGACATCGCGTGCTGGCGAATCACCTACAACATCATTCGGAACACCTCGCTC---------AA-------AAAGTG--------C--------CCCGAGGAGTTCCGAAT-G--C-TACAGC---AAA---GAAATAGTTCGATAATCGAACC-AA-TATTACGGTGGTTTTGAGTTC-----GCTATGTGTATTAA---ATGT--TTCTTACCT--A-A-A-TATATGTNTA-TAT--T-A-CCTAATNATTCAATCACAAAGTTTCCTTGCAAATACAGTA--T----T----AACTCCAA--ATCTAAAAATAGATGAGGNG---AAGA--------AAAAAG---TA---G-------------G--------CTACTAGCATAATACAGCTTGGAAAAC-ATTANGCTAGTAGCAGTCAACTGTATTAAAATGTTAGTAAAGTTAAAAGTT----GCATGATAAAT
gi|1 : ATTTACGTTGGCATGGACTATTTGCTCAGTACGATTGTTGCAATGTTACGCATGCCATAGTGCTGCTTTCAGAACAAAATGATGCAATGCTCTATGTTAAGTTACTGTTGCTAAGGTTGTCGCTGAAGATGTAATTGAAGACTGCTTTCACGTGGAGAACCCAATCTCGCCGACTTTTGTGGGATTTACGAAGTACTCCACCCAGGGCACTAGTTCACCCTCGGTACCCATAACATTCACTCACGATGTATACCTTCTTGGATGGAAACGGGGTAATTATCGAGGTAACACATACTTTAATTGAAATGCGCGTAATGTATAATACATCACTAGCATAACAATATATAAAAATTACATGGCTAGTAGCTTATAAT---------GTCAGATGTA-TTTTTGCGAGTAAAAGAAAAGTAACAGATGCGAGCCTTTG------GCGAGT-AG-TTATTTCTTTTCTCCATGAGC------------CAA--------CATGAAACGC-TATTGGTTTTC-ACCACTTTTCATT------TAAAAGCTGAAAATAAA--CATATGTTTGTCATCGCATTACACCTTAAAC-AAA-T-ACAGCAGTTAACGGGTGAATTTTAAGAATGACATCGCGTGCTGGTGAATCACCTACAATATCATTCGGAACACCTCGCTC---------AA-------AAAGTG--------C--------CCAAAGGAGTTCCGGAT-G--C-TACAGC---ATA---TAAATAGTCCGATAATCGAACC-AA-TATTACGGTGGTTTTGAGATC-----GATAGGTGTATTAA---TTAT--TTCTTACCT--A-ATA-TATATATATA-TAT--T-A-CCAAATGGTTCAATCACAAAGTTTCCTTGCAAATATAGTA--T----T----GACTCCAA--TTCCAAAAATAGATGAGGTG---AAAA--------AAAAAG---GA---G-------------G--------CTACTAGCATAATACAGCTTGGTAAAC-ATGAGGTCAGTAGCAGTCAACTATATTAAAATGTTAGTAAACTTAAAAGTT----GCATGATGAAT
gi|10 : tcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATTACATGGTTAGTAGATTAGAAA---------GTCATTTGTA-TTTTGGCGA-------------AATA-------------G------GCTGGC-CT-TTATTTCTGTTCGACACAGGCTACTAACGAGGTCAATTATTTATCATGAAATAC-TATTTGTTTTC-ATCACTTTTCGTT------TA-------AACATCAATTTATAT-TTTGTCATAGCACTACCTCTTTAAC-AAA-
gi|11 : ttatgaatggattattatgacaataaatataatgaatgtttatatgttTGCATTAT---TTGT--TT-TTGTTT--A-A-T-T---TATTTG-TAT--T-A-TTTATTTTCTCG-TCACA--GTTGA--TATAAATAGATTAGTT----TGGAAAACTCCAA--ATCTAAAAATAGATAAT------AAGA--------AAAAAG---TA---GTTCCG--------G--------CTACTAGCATAATACAGCTTGGAAAAT-ATTATGCTAGTAGCAGTTGGCTGTATT---ATGTTAGTACAGTTAAAGGTT----GCATGATA
gi|12 : ATTTATAAGAATTACATGGTTAGTAGCTTAGAAT---------GGCAGCTGTA-TTTTGGCGA
gi|13 : atttgttaatcgtaatgtaaacgggcaaagcccggctttagatattgcaaatgagaatgatttaaattttcattttttctgAAGAATTACTTGGTTAGTAGCTTAAAAA---------GTCAGCAGTA-TTTTGGCGAGTGTAAGAAAAGTGATAAATGCAAG
gi|14 : catcatttaatgattcAACTACACGGTTAGTAGCTTAGAAT---------GTCAGCTGTA-TTTTGGTGAGTGTAAGAAAAGTAATAAATGCGAGact
gi|15 : ATTCGGAACACCTCGCTCTATTCTCAAAA-------AAAGTG--------CGAGCAGTGCCCGAGGAGTTCC
gi|16 : ATTCGGAACACCTCGCTC---------AATTCATAGAAGGTGCGAGCAGTC--------CCCGAGGAGTTCC
gi|17 : TCATTCGGAACACCTCGTTC---------AA-----------TT--------C--------TCCGAGGAGTTCCGAAT-
gi|2 : cATTTACGTTGGCATGGACTATTTGCTCAGTACGATTGTTGAAATGTTACACATGCCATAGTGCTGCTTTCAGAACAAAATGATGCAATGCTCTATATTTAGTTACTGTTGCTAAGGTTGTCGCTGAAGATGTAATTGAAGACTGCTTTCACGTGGAGAACCCAATCTCGCCCACTTCTGTGGGATTTACGAAGTACTTCACCCAGGGCACTAGTTCACCCTCGGTACCCATAACATTCACTCACGATGTATACCTTCTTGGGTGGAAACGGGGTAATTATCGAGGTAACACATACTTTAATTGAAATGCGCGTAATGTATAATACATCACTAGTATAACAATATATAAGAATTACATGGCTAGTAGCTTATAAT---------GTCAGATGTATTTTTTTCGAGTAAAAGAAAAGTAACAGATGCGAGCCTTTG------GCGAGT-AG-TTATTTCTTTTCGCCATGAGC------------CAA--------CATGAAACGC-TATTGTTTTTC-ACTACTTTTCATT------TAAAAGCTGAGAATAAACATATGT-TT--TCATCGCATTTCACCTTTAAC-AAA-T-ACAGCAGTTAACGGGTGAATTTTAAGAATGACATCGCGTGCTGGTGAATCACCTACAATATCATTTGGAACACCTCGCTC---------AA-------AAAGTG--------C--------CCAAAGGAGTTCCGAAT-G--C-TACAGC---ATA---TAAATAGTCCGATAATCGAATC--------ACGGTGGTTTTGAGATC-----GATAAGTGTATTAA---ATAT--TTCTTACCT--A-ATA-TATATATATA-TAT--TAA-CCAAATGGTTCAATCACAAAGTTTCCTTGCAAATATAGTA--T----T----AGCTCCAA--TTCCAAAAATAGATGAGGTG---AA-A--------AAAAAG---TAGGTG-------------G--------CTACTAGCATAATACAGCTTGGTAAAC-ATTAGGTCAGTAGCAGTCAACTATATTAAAATGTTAGTAAACTTAAAAGTT----GCATGATGA
gi|3 : ctcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATAAAAATA------AATTACATGGTTAGTAGTTTAGAAT---------ATCAGCTTTA-TTTTGGCTCGTG-ACGAAAAGAAATATATGGTCGCCATCG------GCTCGC-AT-CTATTATTTTTC-TTACAATCG-----------CAA--------TA-GAGATATGTTTTAGTTGAC-AACACTTGTC
gi|3 : tgCTCTA-TT---GCGATTGTAAGAAAAATAATAGATGCGAGCCGATG------GCGACC-AT-ATATTTCTTTTCGTCACGAGC------------CAA--------AATAAAGCcatgaaacactatttgatttcaccacttataaaaggggaaaatacattaatattttgtcattgcataatatatgacagttagcagatgaatcttaatcacgacatcgcgtgctggcgaataaccaacaaaaacgaaatagttcgttaaccaactgtgacagtggttttaggtttgccgtgtgtaataagtaatgtatttcttaccggaaaatatctgtttagtaccgtacctaatcatacaatcaaaacacttccttgccaatacagtattaactctatacttcaaaatagataaggggaaaagtaaaactggcggcgaacatgattcagcttggaaaactatttggctagtagaagttaactctattatgttagtaaatttgcatgatcaa
gi|3 : tggacaagtgttgtcaactaaaacatat--------CATGAAACAC-TATTTGATTTC-ACCACTTAT-----------AAAAGGGGAAAATACATTAATAT-TTTGTCATTGCA---------TAAT-A---T-ATGACAGTTAGCAGATGAATCTTAATCACGACATCGCGTGCTGGCGAATAACCAACAAtgatattctaaactactaaccatgtaatttatttttatcatgaaacactatttgatttcaccacttataaaaggggaaaatacattaatattttgtcattgcataatatatgacagttagcagatgaatcttaatcacgacatcgcgtgctggcgaataaccaacaaaaacgaaatagttcgttaaccaactgtgacagtggttttaggtttgccgtgtgtaataagtaatgtatttcttaccggaaaatatctgtttagtaccgtacctaatcatacaatcaaaacacttccttgccaatacagtattaactctatacttcaaaatagataaggggaaaagtaaaactggcggcgaacatgattcagcttggaaaactatttggctagtagaagttaactctattatgttagtaaatttgcatgatcaa
gi|3 : tggacaagtgttgtcaactaaaacatatctctattgcgattgtaagaaaaataatagatgcgagccgatggcgaccatatatttcttttcgtcacgagccaaaataaagctgatattctaaactactaaccatgtaatttatttttatCAAC---AAAAACGAAATAGTTCGTTAACC-AAC-----TGTGACAGTGGTTTTAGGTTT-----GCCGTGTGTAATAAGTAATGTATTTCTTACCGGAA-A-A-TATCTGTTTAGTACCGT-A-CCTAATCATACAATCAAAACACTTCCTTGCCAATACAGTA--T----T----AACTCTAT--ACTTCAAAATAGATAAGGGG---AAAA--------GTAAAA---CT---G-------------G--------CGGCGAACATGATTCAGCTTGGAAAACTATTTGGCTAGTAGAAGTTAACTCTATT---ATGTTAGTAAA-T------TT----GCATGATCAAaaacgaaatagttcgttaaccaactgtgacagtggttttaggtttgccgtgtgtaataagtaatgtatttcttaccggaaaatatctgtttagtaccgtacctaatcatacaatcaaaacacttccttgccaatacagtattaactctatacttcaaaatagataaggggaaaagtaaaactggcggcgaacatgattcagcttggaaaactatttggctagtagaagttaactctattatgttagtaaatttgcatgatcaa
gi|4 : tggacaagtgttgtcaactaaaacatatctctattgcgattgtaagaaaaataatagatgcgagccgatggcgaccatatatttcttttcgtcacgagccaaaataaagctgatattctaaactactaaccatgtaatttatttttatcatgaaacactatttgatttcaccacttataaaaggggaaaatacattaatattttgtcattgcataatatatgacagttagcagatgaatcttaatcacgacatcgcgtgctggcgaataacATTACATGGTTA-TAGTTTTGAATTTTGATGATGTCAGCTGTA-TTTTGGCGAGTGTAAGAAAAATAATAAATA-AAGTAAT---------AAAGA-A-------TCTTCTCGCCACGAGC------------C
gi|4 : CATGATAA-ATA-AAG---TACATGGTTAGTTGCTTGGAAT---------GACAGCTGTA-TTTTGGcaaaatacagctgtcattccaagcaactaaccatgtactttatttatcatgagacaccattagttttcaccactttttgtttaaaaggcaaacataaatttatattttgccatttcacttcccctttaacaaagtacagcagaaagcggatctattgcgacagcgtcaaagaaatagttcgtggttttgagtttgctatgtgtattaaatgtgtataaccttatatatttatagtaacctaatgattcaatcacaaagtttccatgcaaatacaacataaacgtcaaataaaaaaatatacgagagggagaagtagttctatctttctatctactatcactatacagcttggaaaacgttatattagtaaccgtcatctgaattgttagtaaggttaaagttccaagcaagata
gi|4 : attacatggttatagttttgaattttgatgatgtcagctgtattttggcgagtgtaagaaaaataataaataaagtaataaagaatcttctcgccacgagc--------CATGAGACAC-CATTAGTTTTC-ACCACTTTTTGTT------TAAAAGGCAAACATAAATTTATAT-TTTGCCATTTCACTTCCCCTTTAAC-AAAGT-ACAGCAGAAAGCGGATagacaccattagttttcaccactttttgtttaaaaggcaaacataaatttatattttgccatttcacttcccctttaacaaagtacagcagaaagcggatctattgcgacagcgtcaaagaaatagttcgtggttttgagtttgctatgtgtattaaatgtgtataaccttatatatttatagtaacctaatgattcaatcacaaagtttccatgcaaatacaacataaacgtcaaataaaaaaatatacgagagggagaagtagttctatctttctatctactatcactatacagcttggaaaacgttatattagtaaccgtcatctgaattgttagtaaggttaaagttccaagcaagata
gi|4 : attacatggttatagttttgaattttgatgatgtcagctgtattttggcgagtgtaagaaaaataataaataaagtaataaagaatcttctcgccacgagcccaaaatacagctgtcattccaagcaactaaccatgtactttatttatT-G--C-GACAGCGTCAAA---GAAATAGTTCG-----------------------TGGTTTTGAGTTT-----GCTATGTGTATTAA---ATGT--GTATAACCT--------TATATATTTA-TAG--T-AACCTAATGATTCAATCACAAAGTTTCCATGCAAATACAACA--T----A----AACGTCAA--ATAAAAAAATATACGAGAGG---GAG------------AAG---TA---GTTCTATCTTTCTAT--------CTACTATCACTATACAGCTTGGAAAAC-GTTATATTAGTAACCGTCATCTG-----AATTGTTAGTAAGGTT-AAAGTTCCAAGCAAGATActattgcgacagcgtcaaagaaatagttcgtggttttgagtttgctatgtgtattaaatgtgtataaccttatatatttatagtaacctaatgattcaatcacaaagtttccatgcaaatacaacataaacgtcaaataaaaaaatatacgagagggagaagtagttctatctttctatctactatcactatacagcttggaaaacgttatattagtaaccgtcatctgaattgttagtaaggttaaagttccaagcaagata
gi|5 : attacatggttatagttttgaattttgatgatgtcagctgtattttggcgagtgtaagaaaaataataaataaagtaataaagaatcttctcgccacgagcccaaaatacagctgtcattccaagcaactaaccatgtactttatttatcatgagacaccattagttttcaccactttttgtttaaaaggcaaacataaatttatattttgccatttcacttcccctttaacaaagtacagcagaaagcggatctatTTACATGGTTAGTAGCTTAGAAT---------GTCAGCTGTT-TTTTGATGATTGTGAGAAAAGTAATACATTCAAGCCTTTG--------TA---AT-TCATTTAT------------------------------------CATGAAACTT-TATTTGTTTTC-ACCACTTTTAGTT------TGAAAGGTGAACATGAATTTATAT-TTTTTCATTGCA---------TA---AAA-T-ACGGCAGTTTGCGGATGAATCTTTAGTACGACACCGCGTACTGGCGAATTACCTACAGCA
gi|5 : CGAAT-TACC-TACAGC---AAA---GAAATAATTCGATAATCGAACT-AA-TATTAAAGTGGTTTTGGGTTT-----GCTATGAGTATTTA---ATGT--TTCTAACCT--A-A-A-TATATTTGT----T--T-A-CCTAATCATCCAGTCAC-AATTTTCCATACCAATACAGTA--T----T----GACTCTAAATATTTAAAAATAGATGAGGGGGT-GAGG--------AAATAGCTCTA---G-------------A---------TACCTGCATAATACAGCTTGGAAAAT-ATCTTGCTAGTTGCAGTCAGCTATATT---TTGATAGTAAGGTTAAAAGTT----GCATGATAAaagaaataattcgataatcgaactaatattaaagtggttttgggtttgctatgagtatttaatgtttctaacctaaatatatttgtttacctaatcatccagtcacaattttccataccaatacagtattgactctaaatatttaaaaatagatgagggggtgaggaaatagctctagatacctgcataatacagcttggaaaatatcttgctagttgcagtcagctatattttgatagtaaggttaaaagttgcatgataa
gi|6 : ttacatggttagtagcttagaatgtcagctgttttttgatgattgtgagaaaagtaatacattcaagcctttgtaattcatttatcatgaaactttatttgttttcaccacttttagtttgaaaggtgaacatgaatttatattttttcattgcataaaatacggcagtttgcggatgaatctttagtacgacaccgcgtactggCAA-ATGTAAGAATAATATGGTTTGTAGGTTAGCGT---------GTCTGCTGT--CTTTGACGAGTGTAAGAAAAGTAATTAATGCAAGCCTTTATTCGTCGCAAGCCATGTTACTTATGT------------------------AT--------CATGAAACAA-TCTTATTTTTC-AACACTTTTTGTT-------AAAAGGTGAACATAAATTCATAT-TTTGTCAACGCACTTCACTTTTTAC-AAA-TTACGGCAATTAGCGGATGAATTTTAAGTACAAAATCGCATATTGGCGAATCACATACAACA
gi|6 : acatccttaagtgaatCGAATCA--CATACAAC---AAA---CAAATAGTTCCATTATCGAACCAAA-TATTACaacaaatagttccattatcgaaccaaatattacatcaaagtttccttgtaaatactgtaatgcaataactccaaacctaaaaatagacgaggagcaaaagagtttccggagaaagagaattttcatcttctaacatataaaaacttggaaaatagtccgctgatagccgtaaactgtattaaatttaacgttgcattataaat
gi|6 : acatccttaagtgaatcaaatgtaagaataatatggtttgtaggttagcgtgtctgctgtctttgacgagtgtaagaaaagtaattaatgcaagcctttattcgtcgcaagccatgttacttatgtatcatgaaacaatcttatttttcaacactttttgttaaaaggtgaacataaattcatattttgtcaacgcacttcactttttacaaattacggcaattagcggatgaattttaagtacaaaatcgcatattggCAAAGTTTCCTTGTAAATACTGTAA-TGCAAT----AACTCCAA--ACCTAAAAATAGACGAGGAGCAAAAGAGTTTCCGGAGAAAG----A---G-------------AATTTTCATCTTCTAACATATAAAAACTTGGAAAAT-AGTCCGCTGATAGCCGTAAACTGTATTAAA------------TTTAACGTT----GCATTATAAATatcaaagtttccttgtaaatactgtaatgcaataactccaaacctaaaaatagacgaggagcaaaagagtttccggagaaagagaattttcatcttctaacatataaaaacttggaaaatagtccgctgatagccgtaaactgtattaaatttaacgttgcattataaat
gi|7 : acatccttaagtgaatcaaatgtaagaataatatggtttgtaggttagcgtgtctgctgtctttgacgagtgtaagaaaagtaattaatgcaagcctttattcgtcgcaagccatgttacttatgtatcatgaaacaatcttatttttcaacactttttgttaaaaggtgaacataaattcatattttgtcaacgcacttcactttttacaaattacggcaattagcggatgaattttaagtacaaaatcgcatattggcgaatcacatacaacaaacaaatagttccattatcgaaccaaatattacatGTTAGTAGCTTAGGAT---------AGCAGCTGAG-TTTTAGCGAGCGTAAGAAAAGTAATAAATGCGAGC----------------C-AT-TTA-------------CGAGC-----------------------------------ATTTATTT-------CTTTTCGTTACGAGCCAGAAGGTGAAAATAAAATTAT------GTCATCGCATTCCG--TTTAAC-AAAAT-ACGGCAATAAGCGGAAGAAT---AAGTTCGATTTCGTGTGCTGGACAATCACCTACTACA
gi|7 : --C-TACTAC---AAA---GAAATAATTTGTTAATCGAACC-AAATGTTACAACGGTTTTA----------------TGCATTTA---ATGT--TTCTTACCT--ATA-A-CATTTGTTT-------T-A-CTTAATAATTCAGTCACAAAATTTCCTTGCAAATATAGCA--T----T----AACCCCAA--ATCTAAAAAaagaaataatttgttaatcgaaccaaatgttacaacggttttatgcatttaatgtttcttacctataacatttgttttacttaataattcagtcacaaaatttccttgcaaatatagcattaaccccaaatctaaaaaaa
gi|8 : gttagtagcttaggatagcagctgagttttagcgagcgtaagaaaagtaataaatgcgagccatttacgagcatttatttcttttcgttacgagccagaaggtgaaaataaaattatgtcatcgcattccgtttaacaaaatacggcaataagcggaagaataagttcgatttcgtgtgctggacaatcacGCATAGTAA---ATAGCAATTACATTGTTAGTAGCTTAGAAT---------GGTAGCTGTA-CTTTAGCAAGTGTTATAAAAGTAATAAATGCGAGCCATAG------GCCAGC-AT-TTATTACTTTTTGTCACGAGC------------CAA--------AATaa
gi|8 : cctgtgattttgtacagtagaattttatctttgtgtaacttatgataaagttttgggtaagaatAATTACATAGTTAGTAGCTTAGAAT---------GTCAGCTATA-TTTTGGCTCGTG-ACAAAAAGTAATAAATGCTGGCCTATG------GCTCGC-AT-TTATTACTTTTatagctgacattctaagctactaactatgtaattaatttatcatttaacaccattggttttttactaatttttgtttaaaaggcgaacataaatttatattttgtcattgcacttcccctttaacaaaatacg
gi|8 : cctgtgattttgtacagtagaattttatctttgtgtaacttatgataaagttttgggtaagaatgcatagtaaatagcaattacattgttagtagcttagaatggtagctgtactttagcaagtgttatAACAC-CATTGGTTTTTTACTAATTTTTGTT------TAAAAGGCGAACATAAATTTATAT-TTTGTCATTGCACTTCCCCTTTAACAAAA-T-ACGaatttatcatttaacaccattggttttttactaatttttgtttaaaaggcgaacataaatttatattttgtcattgcacttcccctttaacaaaatacg
gi|9 : cctgtgattttgtacagtagaattttatctttgtgtaacttatgataaagttttgggtaagaatgcatagtaaatagcaattacattgttagtagcttagaatggtagctgtactttagcaagtgttataaaagtaataaatgcgagccataggccagcatttattactttttgtcacgagccaaaatatagctgacattctaagctactaactatgtaattaatttatcatttTTGTT------AAAAAGACGAAAATAAATTTATAT-TTTTTCATTGCACTTCCCCTTTAAC-AAAAT-ACGGCAGTTAGCAGATGAATCTTAGGAACGTCGTTACGTGCTGACGAATCACCTATAGCA
gi|9 : CGAAT-CACC-TATAGC---AA----GAAATAGTCCGATAATCAAAAC-AAATATTAT--TGCTTTTTTTTTCTTTTTGCTATGGGTATCTT---ATGT--TTTTTAACT--A-A-AATATAGGTTT----T--T-A-CCTAATAACTGAATCA-AATGTTTCCTTGCAAATACCGTA--T----T----AACCCCagaaatagtccgataatcaaaacaaatattattgctttttttttctttttgctatgggtatcttatgttttttaactaaaatataggtttttacctaataactgaatcaaatgtttccttgcaaataccgtattaaccccgtcgattgaaattccatacatgtat
Alignments
lowQualScore : 1 111111111 1111111111 33333333333333333333333 1111111 1 66666666666666666666666666666666666666666 2222 11111 111111 11111111 1111111 111111111111 222222222222222 7777777777777777777777777777777 2222 1111
lowQualScore : 1 1 1 2 1 1 111111111 2 4 2 0 3333333333 2 3 3 0 2 99 33333333333333333333333 4 1 4 2 3333333 3 1 4 0 4 2 55 4 2 4 4 1 44444444444444444444444444444444444444444 2222 5 888 888 3 1 99999 0 7 6 1 444444 0 1 0 888 66 1 55555555 111 7777777 5 5 1 0 444444444444 66 3 666666666666666 0 2222222222222222222222222222222 5 22 0 3333 7 5 2222
lowQualScore : . . . . . . ......... . . . . .......... . . . . . .. ....................... . . . . ....... . . . . . . .. . . . . . ......................................... .... . ... ... . . ..... . . . . ...... . . . ... .. . ........ ... ....... . . . . ............ .. . ............... . ............................... . .. . .... . . ....
lowQualScore : 0 0 0 0 4 4 444444444 7 4 1 7 6666666666 3 6 6 3 0 88 22222222222222222222222 0 0 0 6 9999999 0 0 0 5 8 5 44 0 0 4 0 0 44444444444444444444444444444444444444444 4444 7 888 888 6 4 55555 8 6 0 9 777777 7 6 8 888 99 4 22222222 555 9999999 0 0 0 9 333333333333 99 0 777777777777777 3 9999999999999999999999999999999 7 99 4 4444 9 1 1111
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTACGTTGGCATGGACTATTTGCTCAGTACGATTGTTGNAATGTTACGCATGCCATAGTGCTGCTTTCAGAACAAAATGATGCAATGCTCTATGTTNAGTTACTGTTGCTAAGGTTGTCGCTGAAGATGTAATTGAAGACTGCTTTCACGTGGAGAACCCAATCTCGCCNACTTCTGTGGGATTTACGAAGTACTCCACCCAGGGCACTAGTTCACCCTCGGTACCCATAACATTCACTCACGATGTATACCTTCTTGGGTGGAAACGGGGTAATTATCGAGGTAACACATACTTTAATTGAAATGCGCGTAATGTATAATACATCACTAGCATAACAATATATAAGAATTACATGGTTAGTAGCTTAGAAT---------GTCAGCTGTA-TTTTGGCGAGTGTAAGAAAAGTAATAAATGCGAGCCNTTG------GCNAGC-AT-TTATTTCTTTTCGCCACGAGC------------CAA--------CATGAAACAC-TATTNGTTTTC-ACCACTTTTCGTT------TAAAAGGCGAANATAAATTTATAT-TTTGTCATCGCACTTCNCCTTTAAC-AAA-T-ACGGCAGTTAGCGGATGAATCTTAAGNACGACATCGCGTGCTGGCGAATCACCTACAACATCATTCGGAACACCTCGCTC---------AA-------AAAGTG--------C--------CCCGAGGAGTTCCGAAT-G--C-TACAGC---AAA---GAAATAGTTCGATAATCGAACC-AA-TATTACGGTGGTTTTGAGTTC-----GCTATGTGTATTAA---ATGT--TTCTTACCT--A-A-A-TATATGTTTA-TAT--T-A-CCTAATNATTCAATCACAAAGTTTCCTTGCAAATACAGTA--T----T----AACTCCAA--ATCTAAAAATAGATGAGGGG---AAGA--------AAAAAG---TA---G-------------G--------CTACTAGCATAATACAGCTTGGAAAAC-ATTANGCTAGTAGCAGTCAACTGTATTAAAATGTTAGTAAAGTTAAAAGTT----GCATGATAAAT
Reference ( family-4525 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTACGTTGGCATGGACTATTTGCTCAGTACGATTGTTGNAATGTTACGCATGCCATAGTGCTGCTTTCAGAACAAAATGATGCAATGCTCTATGTTNAGTTACTGTTGCTAAGGTTGTCGCTGAAGATGTAATTGAAGACTGCTTTCACGTGGAGAACCCAATCTCGCCNACTTCTGTGGGATTTACGAAGTACTCCACCCAGGGCACTAGTTCACCCTCGGTACCCATAACATTCACTCACGATGTATACCTTCTTGGGTGGAAACGGGGTAATTATCGAGGTAACACATACTTTAATTGAAATGCGCGTAATGTATAATACATCACTAGCATAACAATATATAAGAATTACATGGTTAGTAGCTTAGAAT---------GTCAGCTGTA-TTTTGGCGAGTGTAAGAAAAGTAATAAATGCGAGCCNTTG------GCNAGC-AT-TTATTTCTTTTCGCCACGAGC------------CAA--------CATGAAACAC-TATTNGTTTTC-ACCACTTTTCGTT------TAAAAGGCGAANATAAATTTATAT-TTTGTCATCGCACTTCNCCTTTAAC-AAA-T-ACGGCAGTTAGCGGATGAATCTTAAGNACGACATCGCGTGCTGGCGAATCACCTACAACATCATTCGGAACACCTCGCTC---------AA-------AAAGTG--------C--------CCCGAGGAGTTCCGAAT-G--C-TACAGC---AAA---GAAATAGTTCGATAATCGAACC-AA-TATTACGGTGGTTTTGAGTTC-----GCTATGTGTATTAA---ATGT--TTCTTACCT--A-A-A-TATATGTTTA-TAT--T-A-CCTAATNATTCAATCACAAAGTTTCCTTGCAAATACAGTA--T----T----AACTCCAA--ATCTAAAAATAGATGAGGGG---AAGA--------AAAAAG---TA---G-------------G--------CTACTAGCATAATACAGCTTGGAAAAC-ATTANGCTAGTAGCAGTCAACTGTATTAAAATGTTAGTAAAGTTAAAAGTT----GCATGATAAAT
gi|1 : ATTTACGTTGGCATGGACTATTTGCTCAGTACGATTGTTGCAATGTTACGCATGCCATAGTGCTGCTTTCAGAACAAAATGATGCAATGCTCTATGTTAAGTTACTGTTGCTAAGGTTGTCGCTGAAGATGTAATTGAAGACTGCTTTCACGTGGAGAACCCAATCTCGCCGACTTTTGTGGGATTTACGAAGTACTCCACCCAGGGCACTAGTTCACCCTCGGTACCCATAACATTCACTCACGATGTATACCTTCTTGGATGGAAACGGGGTAATTATCGAGGTAACACATACTTTAATTGAAATGCGCGTAATGTATAATACATCACTAGCATAACAATATATAAAAATTACATGGCTAGTAGCTTATAAT---------GTCAGATGTA-TTTTTGCGAGTAAAAGAAAAGTAACAGATGCGAGCCTTTG------GCGAGT-AG-TTATTTCTTTTCTCCATGAGC------------CAA--------CATGAAACGC-TATTGGTTTTC-ACCACTTTTCATT------TAAAAGCTGAAAATAAA--CATATGTTTGTCATCGCATTACACCTTAAAC-AAA-T-ACAGCAGTTAACGGGTGAATTTTAAGAATGACATCGCGTGCTGGTGAATCACCTACAATATCATTCGGAACACCTCGCTC---------AA-------AAAGTG--------C--------CCAAAGGAGTTCCGGAT-G--C-TACAGC---ATA---TAAATAGTCCGATAATCGAACC-AA-TATTACGGTGGTTTTGAGATC-----GATAGGTGTATTAA---TTAT--TTCTTACCT--A-ATA-TATATATATA-TAT--T-A-CCAAATGGTTCAATCACAAAGTTTCCTTGCAAATATAGTA--T----T----GACTCCAA--TTCCAAAAATAGATGAGGTG---AAAA--------AAAAAG---GA---G-------------G--------CTACTAGCATAATACAGCTTGGTAAAC-ATGAGGTCAGTAGCAGTCAACTATATTAAAATGTTAGTAAACTTAAAAGTT----GCATGATGAAT
gi|10 : tcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATTACATGGTTAGTAGATTAGAAA---------GTCATTTGTA-TTTTGGCGA-------------AATA-------------G------GCTGGC-CT-TTATTTCTGTTCGACACAGGCTACTAACGAGGTCAATTATTTATCATGAAATAC-TATTTGTTTTC-ATCACTTTTCGTT------TA-------AACATCAATTTATAT-TTTGTCATAGCACTACCTCTTTAAC-AAA-
gi|11 : ttatgaatggattattatgacaataaatataatgaatgtttatatgttTGCATTAT---TTGT--TT-TTGTTT--A-A-T-T---TATTTG-TAT--T-A-TTTATTTTCTCG-TCACA--GTTGA--TATAAATAGATTAGTT----TGGAAAACTCCAA--ATCTAAAAATAGATAAT------AAGA--------AAAAAG---TA---GTTCCG--------G--------CTACTAGCATAATACAGCTTGGAAAAT-ATTATGCTAGTAGCAGTTGGCTGTATT---ATGTTAGTACAGTTAAAGGTT----GCATGATA
gi|12 : ATTTATAAGAATTACATGGTTAGTAGCTTAGAAT---------GGCAGCTGTA-TTTTGGCGA
gi|13 : atttgttaatcgtaatgtaaacgggcaaagcccggctttagatattgcaaatgagaatgatttaaattttcattttttctgAAGAATTACTTGGTTAGTAGCTTAAAAA---------GTCAGCAGTA-TTTTGGCGAGTGTAAGAAAAGTGATAAATGCAAG
gi|14 : catcatttaatgattcAACTACACGGTTAGTAGCTTAGAAT---------GTCAGCTGTA-TTTTGGTGAGTGTAAGAAAAGTAATAAATGCGAGact
gi|15 : ATTCGGAACACCTCGCTCTATTCTCAAAA-------AAAGTG--------CGAGCAGTGCCCGAGGAGTTCC
gi|16 : ATTCGGAACACCTCGCTC---------AATTCATAGAAGGTGCGAGCAGTC--------CCCGAGGAGTTCC
gi|17 : TCATTCGGAACACCTCGTTC---------AA-----------TT--------C--------TCCGAGGAGTTCCGAAT-
gi|2 : cATTTACGTTGGCATGGACTATTTGCTCAGTACGATTGTTGAAATGTTACACATGCCATAGTGCTGCTTTCAGAACAAAATGATGCAATGCTCTATATTTAGTTACTGTTGCTAAGGTTGTCGCTGAAGATGTAATTGAAGACTGCTTTCACGTGGAGAACCCAATCTCGCCCACTTCTGTGGGATTTACGAAGTACTTCACCCAGGGCACTAGTTCACCCTCGGTACCCATAACATTCACTCACGATGTATACCTTCTTGGGTGGAAACGGGGTAATTATCGAGGTAACACATACTTTAATTGAAATGCGCGTAATGTATAATACATCACTAGTATAACAATATATAAGAATTACATGGCTAGTAGCTTATAAT---------GTCAGATGTATTTTTTTCGAGTAAAAGAAAAGTAACAGATGCGAGCCTTTG------GCGAGT-AG-TTATTTCTTTTCGCCATGAGC------------CAA--------CATGAAACGC-TATTGTTTTTC-ACTACTTTTCATT------TAAAAGCTGAGAATAAACATATGT-TT--TCATCGCATTTCACCTTTAAC-AAA-T-ACAGCAGTTAACGGGTGAATTTTAAGAATGACATCGCGTGCTGGTGAATCACCTACAATATCATTTGGAACACCTCGCTC---------AA-------AAAGTG--------C--------CCAAAGGAGTTCCGAAT-G--C-TACAGC---ATA---TAAATAGTCCGATAATCGAATC--------ACGGTGGTTTTGAGATC-----GATAAGTGTATTAA---ATAT--TTCTTACCT--A-ATA-TATATATATA-TAT--TAA-CCAAATGGTTCAATCACAAAGTTTCCTTGCAAATATAGTA--T----T----AGCTCCAA--TTCCAAAAATAGATGAGGTG---AA-A--------AAAAAG---TAGGTG-------------G--------CTACTAGCATAATACAGCTTGGTAAAC-ATTAGGTCAGTAGCAGTCAACTATATTAAAATGTTAGTAAACTTAAAAGTT----GCATGATGA
gi|3 : ctcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATAAAAATA------AATTACATGGTTAGTAGTTTAGAAT---------ATCAGCTTTA-TTTTGGCTCGTG-ACGAAAAGAAATATATGGTCGCCATCG------GCTCGC-AT-CTATTATTTTTC-TTACAATCG-----------CAA--------TA-GAGATATGTTTTAGTTGAC-AACACTTGTC
gi|3 : tgCTCTA-TT---GCGATTGTAAGAAAAATAATAGATGCGAGCCGATG------GCGACC-AT-ATATTTCTTTTCGTCACGAGC------------CAA--------AATAAAGCcatgaaacactatttgatttcaccacttataaaaggggaaaatacattaatattttgtcattgcataatatatgacagttagcagatgaatcttaatcacgacatcgcgtgctggcgaataaccaacaaaaacgaaatagttcgttaaccaactgtgacagtggttttaggtttgccgtgtgtaataagtaatgtatttcttaccggaaaatatctgtttagtaccgtacctaatcatacaatcaaaacacttccttgccaatacagtattaactctatacttcaaaatagataaggggaaaagtaaaactggcggcgaacatgattcagcttggaaaactatttggctagtagaagttaactctattatgttagtaaatttgcatgatcaa
gi|3 : tggacaagtgttgtcaactaaaacatat--------CATGAAACAC-TATTTGATTTC-ACCACTTAT-----------AAAAGGGGAAAATACATTAATAT-TTTGTCATTGCA---------TAAT-A---T-ATGACAGTTAGCAGATGAATCTTAATCACGACATCGCGTGCTGGCGAATAACCAACAAtgatattctaaactactaaccatgtaatttatttttatcatgaaacactatttgatttcaccacttataaaaggggaaaatacattaatattttgtcattgcataatatatgacagttagcagatgaatcttaatcacgacatcgcgtgctggcgaataaccaacaaaaacgaaatagttcgttaaccaactgtgacagtggttttaggtttgccgtgtgtaataagtaatgtatttcttaccggaaaatatctgtttagtaccgtacctaatcatacaatcaaaacacttccttgccaatacagtattaactctatacttcaaaatagataaggggaaaagtaaaactggcggcgaacatgattcagcttggaaaactatttggctagtagaagttaactctattatgttagtaaatttgcatgatcaa
gi|3 : tggacaagtgttgtcaactaaaacatatctctattgcgattgtaagaaaaataatagatgcgagccgatggcgaccatatatttcttttcgtcacgagccaaaataaagctgatattctaaactactaaccatgtaatttatttttatCAAC---AAAAACGAAATAGTTCGTTAACC-AAC-----TGTGACAGTGGTTTTAGGTTT-----GCCGTGTGTAATAAGTAATGTATTTCTTACCGGAA-A-A-TATCTGTTTAGTACCGT-A-CCTAATCATACAATCAAAACACTTCCTTGCCAATACAGTA--T----T----AACTCTAT--ACTTCAAAATAGATAAGGGG---AAAA--------GTAAAA---CT---G-------------G--------CGGCGAACATGATTCAGCTTGGAAAACTATTTGGCTAGTAGAAGTTAACTCTATT---ATGTTAGTAAA-T------TT----GCATGATCAAaaacgaaatagttcgttaaccaactgtgacagtggttttaggtttgccgtgtgtaataagtaatgtatttcttaccggaaaatatctgtttagtaccgtacctaatcatacaatcaaaacacttccttgccaatacagtattaactctatacttcaaaatagataaggggaaaagtaaaactggcggcgaacatgattcagcttggaaaactatttggctagtagaagttaactctattatgttagtaaatttgcatgatcaa
gi|4 : tggacaagtgttgtcaactaaaacatatctctattgcgattgtaagaaaaataatagatgcgagccgatggcgaccatatatttcttttcgtcacgagccaaaataaagctgatattctaaactactaaccatgtaatttatttttatcatgaaacactatttgatttcaccacttataaaaggggaaaatacattaatattttgtcattgcataatatatgacagttagcagatgaatcttaatcacgacatcgcgtgctggcgaataacATTACATGGTTA-TAGTTTTGAATTTTGATGATGTCAGCTGTA-TTTTGGCGAGTGTAAGAAAAATAATAAATA-AAGTAAT---------AAAGA-A-------TCTTCTCGCCACGAGC------------C
gi|4 : CATGATAA-ATA-AAG---TACATGGTTAGTTGCTTGGAAT---------GACAGCTGTA-TTTTGGcaaaatacagctgtcattccaagcaactaaccatgtactttatttatcatgagacaccattagttttcaccactttttgtttaaaaggcaaacataaatttatattttgccatttcacttcccctttaacaaagtacagcagaaagcggatctattgcgacagcgtcaaagaaatagttcgtggttttgagtttgctatgtgtattaaatgtgtataaccttatatatttatagtaacctaatgattcaatcacaaagtttccatgcaaatacaacataaacgtcaaataaaaaaatatacgagagggagaagtagttctatctttctatctactatcactatacagcttggaaaacgttatattagtaaccgtcatctgaattgttagtaaggttaaagttccaagcaagata
gi|4 : attacatggttatagttttgaattttgatgatgtcagctgtattttggcgagtgtaagaaaaataataaataaagtaataaagaatcttctcgccacgagc--------CATGAGACAC-CATTAGTTTTC-ACCACTTTTTGTT------TAAAAGGCAAACATAAATTTATAT-TTTGCCATTTCACTTCCCCTTTAAC-AAAGT-ACAGCAGAAAGCGGATagacaccattagttttcaccactttttgtttaaaaggcaaacataaatttatattttgccatttcacttcccctttaacaaagtacagcagaaagcggatctattgcgacagcgtcaaagaaatagttcgtggttttgagtttgctatgtgtattaaatgtgtataaccttatatatttatagtaacctaatgattcaatcacaaagtttccatgcaaatacaacataaacgtcaaataaaaaaatatacgagagggagaagtagttctatctttctatctactatcactatacagcttggaaaacgttatattagtaaccgtcatctgaattgttagtaaggttaaagttccaagcaagata
gi|4 : attacatggttatagttttgaattttgatgatgtcagctgtattttggcgagtgtaagaaaaataataaataaagtaataaagaatcttctcgccacgagcccaaaatacagctgtcattccaagcaactaaccatgtactttatttatT-G--C-GACAGCGTCAAA---GAAATAGTTCG-----------------------TGGTTTTGAGTTT-----GCTATGTGTATTAA---ATGT--GTATAACCT--------TATATATTTA-TAG--T-AACCTAATGATTCAATCACAAAGTTTCCATGCAAATACAACA--T----A----AACGTCAA--ATAAAAAAATATACGAGAGG---GAG------------AAG---TA---GTTCTATCTTTCTAT--------CTACTATCACTATACAGCTTGGAAAAC-GTTATATTAGTAACCGTCATCTG-----AATTGTTAGTAAGGTT-AAAGTTCCAAGCAAGATActattgcgacagcgtcaaagaaatagttcgtggttttgagtttgctatgtgtattaaatgtgtataaccttatatatttatagtaacctaatgattcaatcacaaagtttccatgcaaatacaacataaacgtcaaataaaaaaatatacgagagggagaagtagttctatctttctatctactatcactatacagcttggaaaacgttatattagtaaccgtcatctgaattgttagtaaggttaaagttccaagcaagata
gi|5 : attacatggttatagttttgaattttgatgatgtcagctgtattttggcgagtgtaagaaaaataataaataaagtaataaagaatcttctcgccacgagcccaaaatacagctgtcattccaagcaactaaccatgtactttatttatcatgagacaccattagttttcaccactttttgtttaaaaggcaaacataaatttatattttgccatttcacttcccctttaacaaagtacagcagaaagcggatctatTTACATGGTTAGTAGCTTAGAAT---------GTCAGCTGTT-TTTTGATGATTGTGAGAAAAGTAATACATTCAAGCCTTTG--------TA---AT-TCATTTAT------------------------------------CATGAAACTT-TATTTGTTTTC-ACCACTTTTAGTT------TGAAAGGTGAACATGAATTTATAT-TTTTTCATTGCA---------TA---AAA-T-ACGGCAGTTTGCGGATGAATCTTTAGTACGACACCGCGTACTGGCGAATTACCTACAGCA
gi|5 : CGAAT-TACC-TACAGC---AAA---GAAATAATTCGATAATCGAACT-AA-TATTAAAGTGGTTTTGGGTTT-----GCTATGAGTATTTA---ATGT--TTCTAACCT--A-A-A-TATA--TTTG-T-T--T-A-CCTAATCATCCAGTCAC-AATTTTCCATACCAATACAGTA--T----T----GACTCTAAATATTTAAAAATAGATGAGGGGGT-GAGG--------AAATAGCTCTA---G-------------A---------TACCTGCATAATACAGCTTGGAAAAT-ATCTTGCTAGTTGCAGTCAGCTATATT---TTGATAGTAAGGTTAAAAGTT----GCATGATAAaagaaataattcgataatcgaactaatattaaagtggttttgggtttgctatgagtatttaatgtttctaacctaaatatatttgtttacctaatcatccagtcacaattttccataccaatacagtattgactctaaatatttaaaaatagatgagggggtgaggaaatagctctagatacctgcataatacagcttggaaaatatcttgctagttgcagtcagctatattttgatagtaaggttaaaagttgcatgataa
gi|6 : ttacatggttagtagcttagaatgtcagctgttttttgatgattgtgagaaaagtaatacattcaagcctttgtaattcatttatcatgaaactttatttgttttcaccacttttagtttgaaaggtgaacatgaatttatattttttcattgcataaaatacggcagtttgcggatgaatctttagtacgacaccgcgtactggCAA-ATGTAAGAATAATATGGTTTGTAGGTTAGCGT---------GTCTGCTGT--CTTTGACGAGTGTAAGAAAAGTAATTAATGCAAGCCTTTATTCGTCGCAAGCCATGTTACTTATGT------------------------AT--------CATGAAACAA-TCTTATTTTTC-AACACTTTTTGTT-------AAAAGGTGAACATAAATTCATAT-TTTGTCAACGCACTTCACTTTTTAC-AAA-TTACGGCAATTAGCGGATGAATTTTAAGTACAAAATCGCATATTGGCGAATCACATACAACA
gi|6 : acatccttaagtgaatCGAATCA--CATACAAC---AAA---CAAATAGTTCCATTATCGAACCAAA-TATTACaacaaatagttccattatcgaaccaaatattacatcaaagtttccttgtaaatactgtaatgcaataactccaaacctaaaaatagacgaggagcaaaagagtttccggagaaagagaattttcatcttctaacatataaaaacttggaaaatagtccgctgatagccgtaaactgtattaaatttaacgttgcattataaat
gi|6 : acatccttaagtgaatcaaatgtaagaataatatggtttgtaggttagcgtgtctgctgtctttgacgagtgtaagaaaagtaattaatgcaagcctttattcgtcgcaagccatgttacttatgtatcatgaaacaatcttatttttcaacactttttgttaaaaggtgaacataaattcatattttgtcaacgcacttcactttttacaaattacggcaattagcggatgaattttaagtacaaaatcgcatattggCAAAGTTTCCTTGTAAATACTGTAA-TGCAAT----AACTCCAA--ACCTAAAAATAGACGAGGAGCAAAAGAGTTTCCGGAGAAAG----A---G-------------AATTTTCATCTTCTAACATATAAAAACTTGGAAAAT-AGTCCGCTGATAGCCGTAAACTGTATTAAA------------TTTAACGTT----GCATTATAAATatcaaagtttccttgtaaatactgtaatgcaataactccaaacctaaaaatagacgaggagcaaaagagtttccggagaaagagaattttcatcttctaacatataaaaacttggaaaatagtccgctgatagccgtaaactgtattaaatttaacgttgcattataaat
gi|7 : acatccttaagtgaatcaaatgtaagaataatatggtttgtaggttagcgtgtctgctgtctttgacgagtgtaagaaaagtaattaatgcaagcctttattcgtcgcaagccatgttacttatgtatcatgaaacaatcttatttttcaacactttttgttaaaaggtgaacataaattcatattttgtcaacgcacttcactttttacaaattacggcaattagcggatgaattttaagtacaaaatcgcatattggcgaatcacatacaacaaacaaatagttccattatcgaaccaaatattacatGTTAGTAGCTTAGGAT---------AGCAGCTGAG-TTTTAGCGAGCGTAAGAAAAGTAATAAATGCGAGC----------------C-AT-TTA-------------CGAGC-----------------------------------ATTTATTT-------CTTTTCGTTACGAGCCAGAAGGTGAAAATAAAATTAT------GTCATCGCATTCCG--TTTAAC-AAAAT-ACGGCAATAAGCGGAAGAAT---AAGTTCGATTTCGTGTGCTGGACAATCACCTACTACA
gi|7 : --C-TACTAC---AAA---GAAATAATTTGTTAATCGAACC-AAATGTTACAACGGTTTTA----------------TGCATTTA---ATGT--TTCTTACCT--ATA-A-CATTTGTTT-------T-A-CTTAATAATTCAGTCACAAAATTTCCTTGCAAATATAGCA--T----T----AACCCCAA--ATCTAAAAAaagaaataatttgttaatcgaaccaaatgttacaacggttttatgcatttaatgtttcttacctataacatttgttttacttaataattcagtcacaaaatttccttgcaaatatagcattaaccccaaatctaaaaaaa
gi|8 : gttagtagcttaggatagcagctgagttttagcgagcgtaagaaaagtaataaatgcgagccatttacgagcatttatttcttttcgttacgagccagaaggtgaaaataaaattatgtcatcgcattccgtttaacaaaatacggcaataagcggaagaataagttcgatttcgtgtgctggacaatcacGCATAGTAA---ATAGCAATTACATTGTTAGTAGCTTAGAAT---------GGTAGCTGTA-CTTTAGCAAGTGTTATAAAAGTAATAAATGCGAGCCATAG------GCCAGC-AT-TTATTACTTTTTGTCACGAGC------------CAA--------AATaa
gi|8 : cctgtgattttgtacagtagaattttatctttgtgtaacttatgataaagttttgggtaagaatAATTACATAGTTAGTAGCTTAGAAT---------GTCAGCTATA-TTTTGGCTCGTG-ACAAAAAGTAATAAATGCTGGCCTATG------GCTCGC-AT-TTATTACTTTTatagctgacattctaagctactaactatgtaattaatttatcatttaacaccattggttttttactaatttttgtttaaaaggcgaacataaatttatattttgtcattgcacttcccctttaacaaaatacg
gi|8 : cctgtgattttgtacagtagaattttatctttgtgtaacttatgataaagttttgggtaagaatgcatagtaaatagcaattacattgttagtagcttagaatggtagctgtactttagcaagtgttatAACAC-CATTGGTTTTTTACTAATTTTTGTT------TAAAAGGCGAACATAAATTTATAT-TTTGTCATTGCACTTCCCCTTTAACAAAA-T-ACGaatttatcatttaacaccattggttttttactaatttttgtttaaaaggcgaacataaatttatattttgtcattgcacttcccctttaacaaaatacg
gi|9 : cctgtgattttgtacagtagaattttatctttgtgtaacttatgataaagttttgggtaagaatgcatagtaaatagcaattacattgttagtagcttagaatggtagctgtactttagcaagtgttataaaagtaataaatgcgagccataggccagcatttattactttttgtcacgagccaaaatatagctgacattctaagctactaactatgtaattaatttatcatttTTGTT------AAAAAGACGAAAATAAATTTATAT-TTTTTCATTGCACTTCCCCTTTAAC-AAAAT-ACGGCAGTTAGCAGATGAATCTTAGGAACGTCGTTACGTGCTGACGAATCACCTATAGCA
gi|9 : CGAAT-CACC-TATAGC---AA----GAAATAGTCCGATAATCAAAAC-AAATATTAT--TGCTTTTTTTTTCTTTTTGCTATGGGTATCTT---ATGT--TTTTTAACT--A-A-AATATAGGTTT----T--T-A-CCTAATAACTGAATCA-AATGTTTCCTTGCAAATACCGTA--T----T----AACCCCagaaatagtccgataatcaaaacaaatattattgctttttttttctttttgctatgggtatcttatgttttttaactaaaatataggtttttacctaataactgaatcaaatgtttccttgcaaataccgtattaaccccgtcgattgaaattccatacatgtat
blockSeqs : A T C T T T TTTGATGAT T T A TTTATTCGTC T C G G GA TACTAACGAGGTCAATTATTTAT G T T C ACGAGCC T C . C A CT A G T T A TATTCTCAAAAAAAGTGCGAGCAGTG TAC A GTC AAC A G CAAA G A A CTTTTT A GTA AT C GAAAA ATA AGTACCG A A T GTTTGGAA AT T CAAAAGAGTTTCCGG TAGTTCTATCTTTCTAT T AT AAAA G A CCAA
blockSeqs : T T T . . T A TTTG G . . T GC GCAA . G . C T G A . T T AC . A . C C AATTCATAGAAGGTGCGAGCAGTC CAC . . . T G CAAA A G T C T . . C AATA CTG GTAT . . G ATGCAAT . G GTGAGG AGAATTTTCAT . AG AAT C A .
blockSeqs : T T T . . A G ATCG T . . T GT CAA . A . C T C A . C T CC . A . C T AAAAAGTGC CA . . . A G CAAA A A T T T . . A ATAA ATA ATAT . . C TT . G AAGA TAGTTCCGG . TG AAA G A .
blockSeqs : . T T . . T T GATG G . . T GC CAA . T . T T T C . C T AC . . . T T AATTC G . . . A G TAA A G T T T . . C AAAA TTG ATAG . . G TT . G AAAA TAGGTGG . AT A G T .
blockSeqs : . . . . . T G TTTG A . . T GT CAA . A . A T T C . T C CC . . . C T G . . . T A C . T T T T . . C AAT AGG GTT . . C TA . A AAA CTCTAGA . TT A . . .
blockSeqs : . . . . . T A ATAG T . . G T AT . T . T T T C . C T CC . . . . A . . . A . . . . . . . . . T AAA TA T . . A TT . . GAG CTGG . CC T . . .
blockSeqs : . . T C TATG A . . T . . . A . C A C A . C T G . . . . . . . . . . . . A . . . A TT .
blockSeqs : . . T A AT C . . T . . . T . T . C C . . . . . . . TT
blockSeqs : . . T A G T . . . . . G . T . . A . . . . . .
blockSeqs : . . . A . . . . . .
blockSeqs : . . . A
blockSeqs : . . . .
blockSeqs : . .
blockSeqs : .
blockSeqCons : AATTAAAGTGC****************************** CAA** TAGTTCCGN********************** AAA*
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTACGTTGGCATGGACTATTTGCTCAGTACGATTGTTGNAATGTTACGCATGCCATAGTGCTGCTTTCAGAACAAAATGATGCAATGCTCTATGTTNAGTTACTGTTGCTAAGGTTGTCGCTGAAGATGTAATTGAAGACTGCTTTCACGTGGAGAACCCAATCTCGCCNACTTCTGTGGGATTTACGAAGTACTCCACCCAGGGCACTAGTTCACCCTCGGTACCCATAACATTCACTCACGATGTATACCTTCTTGGGTGGAAACGGGGTAATTATCGAGGTAACACATACTTTAATTGAAATGCGCGTAATGTATAATACATCACTAGCATAACAATATATAAGAATTACATGGTTAGTAGCTTAGAAT---------GTCAGCTGTA-TTTTGGCGAGTGTAAGAAAAGTAATAAATGCGAGCCNTTG------GCNAGC-AT-TTATTTCTTTTCGCCACGAGC------------CAA--------CATGAAACAC-TATTNGTTTTC-ACCACTTTTCGTT------TAAAAGGCGAANATAAATTTATAT-TTTGTCATCGCACTTCNCCTTTAAC-AAA-T-ACGGCAGTTAGCGGATGAATCTTAAGNACGACATCGCGTGCTGGCGAATCACCTACAACATCATTCGGAACACCTCGCTC---------AA-------AAAGTG--------C--------CCCGAGGAGTTCCGAAT-G--C-TACAGC---AAA---GAAATAGTTCGATAATCGAACC-AA-TATTACGGTGGTTTTGAGTTC-----GCTATGTGTATTAA---ATGT--TTCTTACCT--A-A-A-TATATGTTTA-TAT--T-A-CCTAATNATTCAATCACAAAGTTTCCTTGCAAATACAGTA--T----T----AACTCCAA--ATCTAAAAATAGATGAGGGG---AAGA--------AAAAAG---TA---G-------------G--------CTACTAGCATAATACAGCTTGGAAAAC-ATTANGCTAGTAGCAGTCAACTGTATTAAAATGTTAGTAAAGTTAAAAGTT----GCATGATAAAT
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTACGTTGGCATGGACTATTTGCTCAGTACGATTGTTGNAATGTTACGCATGCCATAGTGCTGCTTTCAGAACAAAATGATGCAATGCTCTATGTTNAGTTACTGTTGCTAAGGTTGTCGCTGAAGATGTAATTGAAGACTGCTTTCACGTGGAGAACCCAATCTCGCCNACTTCTGTGGGATTTACGAAGTACTCCACCCAGGGCACTAGTTCACCCTCGGTACCCATAACATTCACTCACGATGTATACCTTCTTGGGTGGAAACGGGGTAATTATCGAGGTAACACATACTTTAATTGAAATGCGCGTAATGTATAATACATCACTAGCATAACAATATATAAGAATTACATGGTTAGTAGCTTAGAAT---------GTCAGCTGTA-TTTTGGCGAGTGTAAGAAAAGTAATAAATGCGAGCCNTTG------GCNAGC-AT-TTATTTCTTTTCGCCACGAGC------------CAA--------CATGAAACAC-TATTNGTTTTC-ACCACTTTTCGTT------TAAAAGGCGAANATAAATTTATAT-TTTGTCATCGCACTTCNCCTTTAAC-AAA-T-ACGGCAGTTAGCGGATGAATCTTAAGNACGACATCGCGTGCTGGCGAATCACCTACAACATCATTCGGAACACCTCGCTCAATTAAAGTGC------------------------------CCCGAGGAGTTCCGAAT-G--C-TACAGC---AAA---GAAATAGTTCGATAATCGAACCAA--TATTACGGTGGTTTTGAGTTC-----GCTATGTGTATTAA---ATGT--TTCTTACCT--A-A-A-TATATGTTTA-TAT--T-A-CCTAATNATTCAATCACAAAGTTTCCTTGCAAATACAGTA--T----T----AACTCCAA--ATCTAAAAATAGATGAGGGG---AAGA--------AAAAAGTAGTTCCGN----------------------CTACTAGCATAATACAGCTTGGAAAAC-ATTANGCTAGTAGCAGTCAACTGTATTAAA-TGTTAGTAAAGTTAAAAGTT----GCATGATAAAT
Alignments
lowQualScore : 1 111111111 1111111111 33333333333333333333333 1111111 1 111111 66666666666666666666666666666666 2222 11111 111111 11111111 1111111 111111111111 33333333333333333 3333333333333 222 1111
lowQualScore : 1 1 1 2 1 1 111111111 2 4 2 0 3333333333 2 3 3 0 2 99 33333333333333333333333 4 1 4 2 3333333 3 1 4 0 4 2 55 4 6 4 1 999999 6 99 6 22222222222222222222222222222222 2222 5 888 888 3 1 99999 0 7 6 1 444444 0 1 0 888 66 1 55555555 111 7777777 5 5 1 0 444444444444 66 3 99999999999999999 2222222222222 1 5 22 0 444 8888 2222
lowQualScore : . . . . . . ......... . . . . .......... . . . . . .. ....................... . . . . ....... . . . . . . .. . . . . ...... . .. . ................................ .... . ... ... . . ..... . . . . ...... . . . ... .. . ........ ... ....... . . . . ............ .. . ................. ............. . . .. . ... .... ....
lowQualScore : 0 0 0 0 4 4 444444444 7 4 1 7 6666666666 3 6 6 3 0 88 22222222222222222222222 0 0 0 6 9999999 0 0 0 5 8 5 44 0 0 0 0 222222 7 22 7 88888888888888888888888888888888 4444 7 888 888 6 4 55555 8 6 0 9 777777 7 6 8 888 99 4 22222222 555 9999999 0 0 0 9 333333333333 99 0 99999999999999999 6666666666666 0 7 99 4 777 6666 1111
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTACGTTGGCATGGACTATTTGCTCAGTACGATTGTTGNAATGTTACGCATGCCATAGTGCTGCTTTCAGAACAAAATGATGCAATGCTCTATGTTNAGTTACTGTTGCTAAGGTTGTCGCTGAAGATGTAATTGAAGACTGCTTTCACGTGGAGAACCCAATCTCGCCNACTTCTGTGGGATTTACGAAGTACTCCACCCAGGGCACTAGTTCACCCTCGGTACCCATAACATTCACTCACGATGTATACCTTCTTGGGTGGAAACGGGGTAATTATCGAGGTAACACATACTTTAATTGAAATGCGCGTAATGTATAATACATCACTAGCATAACAATATATAAGAATTACATGGTTAGTAGCTTAGAAT---------GTCAGCTGTA-TTTTGGCGAGTGTAAGAAAAGTAATAAATGCGAGCCNTTG------GCNAGC-AT-TTATTTCTTTTCGCCACGAGC------------CAA--------CATGAAACAC-TATTNGTTTTC-ACCACTTTTCGTT------TAAAAGGCGAANATAAATTTATAT-TTTGTCATCGCACTTCNCCTTTAAC-AAA-TACGGCAGTTAGCGGATGAATCTTAAGNACGACATCGCGTGCTGGCGAATCACCTACAAC------ATCATTCGG-AACACCTCG--CTCA-ATT-------AAAGTG--------C--------CCCGAGGAGTTCCGAAT-G--C-TACAGC---AAA---GAAATAGTTCGATAATCGAACC-AA-TATTACGGTGGTTTTGAGTTC-----GCTATGTGTATTAA---ATGT--TTCTTACCT--A-A-A-TATATGTTTA-TAT--T-A-CCTAATNATTCAATCACAAAGTTTCCTTGCAAATACAGTA--T----T----AACTCCAA--ATCTAAAAATAGATGAGGGG---AAGA----------AAAAAGTAG--------NTCCGGCTACTAGCATAATACAGCTTGGAAAAC-ATTANGCTAGTAGCAGTCAACTGTATT-AAATGTTAGTAAAGTTAAAAGTT----GCATGATAAAT
Reference ( family-4525 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTACGTTGGCATGGACTATTTGCTCAGTACGATTGTTGNAATGTTACGCATGCCATAGTGCTGCTTTCAGAACAAAATGATGCAATGCTCTATGTTNAGTTACTGTTGCTAAGGTTGTCGCTGAAGATGTAATTGAAGACTGCTTTCACGTGGAGAACCCAATCTCGCCNACTTCTGTGGGATTTACGAAGTACTCCACCCAGGGCACTAGTTCACCCTCGGTACCCATAACATTCACTCACGATGTATACCTTCTTGGGTGGAAACGGGGTAATTATCGAGGTAACACATACTTTAATTGAAATGCGCGTAATGTATAATACATCACTAGCATAACAATATATAAGAATTACATGGTTAGTAGCTTAGAAT---------GTCAGCTGTA-TTTTGGCGAGTGTAAGAAAAGTAATAAATGCGAGCCNTTG------GCNAGC-AT-TTATTTCTTTTCGCCACGAGC------------CAA--------CATGAAACAC-TATTNGTTTTC-ACCACTTTTCGTT------TAAAAGGCGAANATAAATTTATAT-TTTGTCATCGCACTTCNCCTTTAAC-AAA-TACGGCAGTTAGCGGATGAATCTTAAGNACGACATCGCGTGCTGGCGAATCACCTACAAC------ATCATTCGG-AACACCTCG--CTCA-ATT-------AAAGTG--------C--------CCCGAGGAGTTCCGAAT-G--C-TACAGC---AAA---GAAATAGTTCGATAATCGAACC-AA-TATTACGGTGGTTTTGAGTTC-----GCTATGTGTATTAA---ATGT--TTCTTACCT--A-A-A-TATATGTTTA-TAT--T-A-CCTAATNATTCAATCACAAAGTTTCCTTGCAAATACAGTA--T----T----AACTCCAA--ATCTAAAAATAGATGAGGGG---AAGA----------AAAAAGTAG--------TTCCGNCTACTAGCATAATACAGCTTGGAAAAC-ATTANGCTAGTAGCAGTCAACTGTATT-AAATGTTAGTAAAGTTAAAAGTT----GCATGATAAAT
gi|1 : ATTTACGTTGGCATGGACTATTTGCTCAGTACGATTGTTGCAATGTTACGCATGCCATAGTGCTGCTTTCAGAACAAAATGATGCAATGCTCTATGTTAAGTTACTGTTGCTAAGGTTGTCGCTGAAGATGTAATTGAAGACTGCTTTCACGTGGAGAACCCAATCTCGCCGACTTTTGTGGGATTTACGAAGTACTCCACCCAGGGCACTAGTTCACCCTCGGTACCCATAACATTCACTCACGATGTATACCTTCTTGGATGGAAACGGGGTAATTATCGAGGTAACACATACTTTAATTGAAATGCGCGTAATGTATAATACATCACTAGCATAACAATATATAAAAATTACATGGCTAGTAGCTTATAAT---------GTCAGATGTA-TTTTTGCGAGTAAAAGAAAAGTAACAGATGCGAGCCTTTG------GCGAGT-AG-TTATTTCTTTTCTCCATGAGC------------CAA--------CATGAAACGC-TATTGGTTTTC-ACCACTTTTCATT------TAAAAGCTGAAAATAAA--CATATGTTTGTCATCGCATTACACCTTAAAC-AAA-TACAGCAGTTAACGGGTGAATTTTAAGAATGACATCGCGTGCTGGTGAATCACCTACAAT------ATCATTCGG-AACACCTCG--CTCA-A---------AAAGTG--------C--------CCAAAGGAGTTCCGGAT-G--C-TACAGC---ATA---TAAATAGTCCGATAATCGAACC-AA-TATTACGGTGGTTTTGAGATC-----GATAGGTGTATTAA---TTAT--TTCTTACCT--A-ATA-TATATATATA-TAT--T-A-CCAAATGGTTCAATCACAAAGTTTCCTTGCAAATATAGTA--T----T----GACTCCAA--TTCCAAAAATAGATGAGGTG---AAAA----------AAAAAGGA-------------GGCTACTAGCATAATACAGCTTGGTAAAC-ATGAGGTCAGTAGCAGTCAACTATATTAAAATGTTAGTAAACTTAAAAGTT----GCATGATGAAT
gi|10 : tcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATTACATGGTTAGTAGATTAGAAA---------GTCATTTGTA-TTTTGGCGA-------------AATA-------------G------GCTGGC-CT-TTATTTCTGTTCGACACAGGCTACTAACGAGGTCAATTATTTATCATGAAATAC-TATTTGTTTTC-ATCACTTTTCGTT------TAAA-------CATCAATTTATAT-TTTGTCATAGCACTACCTCTTTAAC-AAA-
gi|11 : ttatgaatggattattatgacaataaatataatgaatgtttatatgttTGCATTAT---TTGT--TT-TTGTTT--A-A-T-T---TATTTG-TAT--T-A-TTTATTTTCTCG-TCACA--GTTGA--TATAAATAGATTAGTT----TGGAAAACTCCAA--ATCTAAAAATAGATAAT------AAGA----------AAAAAGTAG--------TTCCGGCTACTAGCATAATACAGCTTGGAAAAT-ATTATGCTAGTAGCAGTTGGCTGTATT---ATGTTAGTACAGTTAAAGGTT----GCATGATA
gi|12 : ATTTATAAGAATTACATGGTTAGTAGCTTAGAAT---------GGCAGCTGTA-TTTTGGCGA
gi|13 : atttgttaatcgtaatgtaaacgggcaaagcccggctttagatattgcaaatgagaatgatttaaattttcattttttctgAAGAATTACTTGGTTAGTAGCTTAAAAA---------GTCAGCAGTA-TTTTGGCGAGTGTAAGAAAAGTGATAAATGCAAG
gi|14 : catcatttaatgattcAACTACACGGTTAGTAGCTTAGAAT---------GTCAGCTGTA-TTTTGGTGAGTGTAAGAAAAGTAATAAATGCGAGact
gi|15 : ATTCGG-AACACCTCG--CTCT-ATTCTCAAAAAAAGTG--------CGAGCAGTGCCCGAGGAGTTCC
gi|16 : ATTCGG-AACACCTCG--CTCA-ATTCATAG--AAGGTGCGAGCAGTC--------CCCGAGGAGTTCC
gi|17 : TCATTCGG-AACACCTCG--TTCA-ATT---------------------C--------TCCGAGGAGTTCCGAAT-
gi|2 : cATTTACGTTGGCATGGACTATTTGCTCAGTACGATTGTTGAAATGTTACACATGCCATAGTGCTGCTTTCAGAACAAAATGATGCAATGCTCTATATTTAGTTACTGTTGCTAAGGTTGTCGCTGAAGATGTAATTGAAGACTGCTTTCACGTGGAGAACCCAATCTCGCCCACTTCTGTGGGATTTACGAAGTACTTCACCCAGGGCACTAGTTCACCCTCGGTACCCATAACATTCACTCACGATGTATACCTTCTTGGGTGGAAACGGGGTAATTATCGAGGTAACACATACTTTAATTGAAATGCGCGTAATGTATAATACATCACTAGTATAACAATATATAAGAATTACATGGCTAGTAGCTTATAAT---------GTCAGATGTATTTTTTTCGAGTAAAAGAAAAGTAACAGATGCGAGCCTTTG------GCGAGT-AG-TTATTTCTTTTCGCCATGAGC------------CAA--------CATGAAACGC-TATTGTTTTTC-ACTACTTTTCATT------TAAAAGCTGAGAATAAACATATGT-TT--TCATCGCATTTCACCTTTAAC-AAA-TACAGCAGTTAACGGGTGAATTTTAAGAATGACATCGCGTGCTGGTGAATCACCTACAAT------ATCATTTGG-AACACCTCG--CTCA-A---------AAAGTG--------C--------CCAAAGGAGTTCCGAAT-G--C-TACAGC---ATA---TAAATAGTCCGATAATCGAATC--------ACGGTGGTTTTGAGATC-----GATAAGTGTATTAA---ATAT--TTCTTACCT--A-ATA-TATATATATA-TAT--TAA-CCAAATGGTTCAATCACAAAGTTTCCTTGCAAATATAGTA--T----T----AGCTCCAA--TTCCAAAAATAGATGAGGTG---AA-A----------AAAAAGTAG--------GT--GGCTACTAGCATAATACAGCTTGGTAAAC-ATTAGGTCAGTAGCAGTCAACTATATTAAAATGTTAGTAAACTTAAAAGTT----GCATGATGA
gi|3 : ctcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATAAAAATA------AATTACATGGTTAGTAGTTTAGAAT---------ATCAGCTTTA-TTTTGGCTCGTG-ACGAAAAGAAATATATGGTCGCCATCG------GCTCGC-AT-CTATTATTTTTC-TTACAATCG-----------CAA--------TA-GAGATATGTTTTAGTTGAC-AACACTTGTC
gi|3 : tgCTCTA-TT---GCGATTGTAAGAAAAATAATAGATGCGAGCCGATG------GCGACC-AT-ATATTTCTTTTCGTCACGAGC------------CAA--------AATAAAGCcatgaaacactatttgatttcaccacttataaaaggggaaaatacattaatattttgtcattgcataatatatgacagttagcagatgaatcttaatcacgacatcgcgtgctggcgaataaccaacaaaaacgaaatagttcgttaaccaactgtgacagtggttttaggtttgccgtgtgtaataagtaatgtatttcttaccggaaaatatctgtttagtaccgtacctaatcatacaatcaaaacacttccttgccaatacagtattaactctatacttcaaaatagataaggggaaaagtaaaactggcggcgaacatgattcagcttggaaaactatttggctagtagaagttaactctattatgttagtaaatttgcatgatcaa
gi|3 : tggacaagtgttgtcaactaaaacatat--------CATGAAACAC-TATTTGATTTC-ACCACTTAT-----------AAAAGGGGAAAATACATTAATAT-TTTGTCATTGCA---------TAAT-A---TATGACAGTTAGCAGATGAATCTTAATCACGACATCGCGTGCTGGCGAATAACCAACAAtgatattctaaactactaaccatgtaatttatttttatcatgaaacactatttgatttcaccacttataaaaggggaaaatacattaatattttgtcattgcataatatatgacagttagcagatgaatcttaatcacgacatcgcgtgctggcgaataaccaacaaaaacgaaatagttcgttaaccaactgtgacagtggttttaggtttgccgtgtgtaataagtaatgtatttcttaccggaaaatatctgtttagtaccgtacctaatcatacaatcaaaacacttccttgccaatacagtattaactctatacttcaaaatagataaggggaaaagtaaaactggcggcgaacatgattcagcttggaaaactatttggctagtagaagttaactctattatgttagtaaatttgcatgatcaa
gi|3 : tggacaagtgttgtcaactaaaacatatctctattgcgattgtaagaaaaataatagatgcgagccgatggcgaccatatatttcttttcgtcacgagccaaaataaagctgatattctaaactactaaccatgtaatttatttttatCAAC---AAAAACGAAATAGTTCGTTAACC-AAC-----TGTGACAGTGGTTTTAGGTTT-----GCCGTGTGTAATAAGTAATGTATTTCTTACCGGAA-A-A-TATCTGTTTAGTACCGT-A-CCTAATCATACAATCAAAACACTTCCTTGCCAATACAGTA--T----T----AACTCTAT--ACTTCAAAATAGATAAGGGG------------------AAAAGTAA--------AACTGGCGGCGAACATGATTCAGCTTGGAAAACTATTTGGCTAGTAGAAGTTAACTCTATT---ATGTTAGTAAA-T------TT----GCATGATCAAaaacgaaatagttcgttaaccaactgtgacagtggttttaggtttgccgtgtgtaataagtaatgtatttcttaccggaaaatatctgtttagtaccgtacctaatcatacaatcaaaacacttccttgccaatacagtattaactctatacttcaaaatagataaggggaaaagtaaaactggcggcgaacatgattcagcttggaaaactatttggctagtagaagttaactctattatgttagtaaatttgcatgatcaa
gi|4 : tggacaagtgttgtcaactaaaacatatctctattgcgattgtaagaaaaataatagatgcgagccgatggcgaccatatatttcttttcgtcacgagccaaaataaagctgatattctaaactactaaccatgtaatttatttttatcatgaaacactatttgatttcaccacttataaaaggggaaaatacattaatattttgtcattgcataatatatgacagttagcagatgaatcttaatcacgacatcgcgtgctggcgaataacATTACATGGTTA-TAGTTTTGAATTTTGATGATGTCAGCTGTA-TTTTGGCGAGTGTAAGAAAAATAATAAATA-AAGTAAT---------AAAGA-A-------TCTTCTCGCCACGAGC------------C
gi|4 : CATGATAA-ATA-AAG---TACATGGTTAGTTGCTTGGAAT---------GACAGCTGTA-TTTTGGcaaaatacagctgtcattccaagcaactaaccatgtactttatttatcatgagacaccattagttttcaccactttttgtttaaaaggcaaacataaatttatattttgccatttcacttcccctttaacaaagtacagcagaaagcggatctattgcgacagcgtcaaagaaatagttcgtggttttgagtttgctatgtgtattaaatgtgtataaccttatatatttatagtaacctaatgattcaatcacaaagtttccatgcaaatacaacataaacgtcaaataaaaaaatatacgagagggagaagtagttctatctttctatctactatcactatacagcttggaaaacgttatattagtaaccgtcatctgaattgttagtaaggttaaagttccaagcaagata
gi|4 : attacatggttatagttttgaattttgatgatgtcagctgtattttggcgagtgtaagaaaaataataaataaagtaataaagaatcttctcgccacgagc--------CATGAGACAC-CATTAGTTTTC-ACCACTTTTTGTT------TAAAAGGCAAACATAAATTTATAT-TTTGCCATTTCACTTCCCCTTTAAC-AAAGTACAGCAGAAAGCGGATagacaccattagttttcaccactttttgtttaaaaggcaaacataaatttatattttgccatttcacttcccctttaacaaagtacagcagaaagcggatctattgcgacagcgtcaaagaaatagttcgtggttttgagtttgctatgtgtattaaatgtgtataaccttatatatttatagtaacctaatgattcaatcacaaagtttccatgcaaatacaacataaacgtcaaataaaaaaatatacgagagggagaagtagttctatctttctatctactatcactatacagcttggaaaacgttatattagtaaccgtcatctgaattgttagtaaggttaaagttccaagcaagata
gi|4 : attacatggttatagttttgaattttgatgatgtcagctgtattttggcgagtgtaagaaaaataataaataaagtaataaagaatcttctcgccacgagcccaaaatacagctgtcattccaagcaactaaccatgtactttatttatT-G--C-GACAGCGTCAAA---GAAATAGTTCG-----------------------TGGTTTTGAGTTT-----GCTATGTGTATTAA---ATGT--GTATAACCT--------TATATATTTA-TAG--T-AACCTAATGATTCAATCACAAAGTTTCCATGCAAATACAACA--T----A----AACGTCAA--ATAAAAAAATATACGAGAGG---GAG--------------AAGTAGTTCTATCTTTCTATCTACTATCACTATACAGCTTGGAAAAC-GTTATATTAGTAACCGTCATCTG-----AATTGTTAGTAAGGTT-AAAGTTCCAAGCAAGATActattgcgacagcgtcaaagaaatagttcgtggttttgagtttgctatgtgtattaaatgtgtataaccttatatatttatagtaacctaatgattcaatcacaaagtttccatgcaaatacaacataaacgtcaaataaaaaaatatacgagagggagaagtagttctatctttctatctactatcactatacagcttggaaaacgttatattagtaaccgtcatctgaattgttagtaaggttaaagttccaagcaagata
gi|5 : attacatggttatagttttgaattttgatgatgtcagctgtattttggcgagtgtaagaaaaataataaataaagtaataaagaatcttctcgccacgagcccaaaatacagctgtcattccaagcaactaaccatgtactttatttatcatgagacaccattagttttcaccactttttgtttaaaaggcaaacataaatttatattttgccatttcacttcccctttaacaaagtacagcagaaagcggatctatTTACATGGTTAGTAGCTTAGAAT---------GTCAGCTGTT-TTTTGATGATTGTGAGAAAAGTAATACATTCAAGCCTTTG--------TA---AT-TCATTTAT------------------------------------CATGAAACTT-TATTTGTTTTC-ACCACTTTTAGTT------TGAAAGGTGAACATGAATTTATAT-TTTTTCATTGCA---------TA---AAA-TACGGCAGTTTGCGGATGAATCTTTAGTACGACACCGCGTACTGGCGAATTACCTACAGCAAAGAAATAATTCGATAA----TCGAACTAATATT-------AAAGTG--------
gi|5 : CGAAT-TACC-TACAGC---AAA---GAAATAATTCGATAATCGAACT-AA-TATTAAAGTGGTTTTGGGTTT-----GCTATGAGTATTTA---ATGT--TTCTAACCT--A-A-A-TATA--TTTG-T-T--T-A-CCTAATCATCCAGTCAC-AATTTTCCATACCAATACAGTA--T----T----GACTCTAAATATTTAAAAATAGATGAGGGG---GTGA----------GGAAA-TAG--------CTCTAGATACCTGCATAATACAGCTTGGAAAAT-ATCTTGCTAGTTGCAGTCAGCTATATT---TTGATAGTAAGGTTAAAAGTT----GCATGATAAgttttgggtttgctatgagtatttaatgtttctaacctaaatatatttgtttacctaatcatccagtcacaattttccataccaatacagtattgactctaaatatttaaaaatagatgagggggtgaggaaatagctctagatacctgcataatacagcttggaaaatatcttgctagttgcagtcagctatattttgatagtaaggttaaaagttgcatgataa
gi|6 : ttacatggttagtagcttagaatgtcagctgttttttgatgattgtgagaaaagtaatacattcaagcctttgtaattcatttatcatgaaactttatttgttttcaccacttttagtttgaaaggtgaacatgaatttatattttttcattgcataaaatacggcagtttgcggatgaatctttagtacgacaccgcgtactggCAA-ATGTAAGAATAATATGGTTTGTAGGTTAGCGT---------GTCTGCTGT--CTTTGACGAGTGTAAGAAAAGTAATTAATGCAAGCCTTTATTCGTCGCAAGCCATGTTACTTATGT------------------------AT--------CATGAAACAA-TCTTATTTTTC-AACACTTTTTGTT-------AAAAGGTGAACATAAATTCATAT-TTTGTCAACGCACTTCACTTTTTAC-AAATTACGGCAATTAGCGGATGAATTTTAAGTACAAAATCGCATATTGGCGAATCACATACAAC------A
gi|6 : acatccttaagtgaatCGAATCA--CATACAAC---AAA---CAAATAGTTCCATTATCGAACCAAA-TATTACaacaaatagttccattatcgaaccaaatattacatcaaagtttccttgtaaatactgtaatgcaataactccaaacctaaaaatagacgaggagcaaaagagtttccggagaaagagaattttcatcttctaacatataaaaacttggaaaatagtccgctgatagccgtaaactgtattaaatttaacgttgcattataaat
gi|6 : acatccttaagtgaatcaaatgtaagaataatatggtttgtaggttagcgtgtctgctgtctttgacgagtgtaagaaaagtaattaatgcaagcctttattcgtcgcaagccatgttacttatgtatcatgaaacaatcttatttttcaacactttttgttaaaaggtgaacataaattcatattttgtcaacgcacttcactttttacaaattacggcaattagcggatgaattttaagtacaaaatcgcatattggCAAAGTTTCCTTGTAAATACTGTAA-TGCAAT----AACTCCAA--ACCTAAAAATAGACGAGGAGCAAAAGAGTTTCCGGAGAAAGAGAAT--------TTTCATCTTCTAACATATAAAAACTTGGAAAAT-AGTCCGCTGATAGCCGTAAACTGTATT-AAAT-TT----------AACGTT----GCATTATAAATatcaaagtttccttgtaaatactgtaatgcaataactccaaacctaaaaatagacgaggagcaaaagagtttccggagaaagagaattttcatcttctaacatataaaaacttggaaaatagtccgctgatagccgtaaactgtattaaatttaacgttgcattataaat
gi|7 : acatccttaagtgaatcaaatgtaagaataatatggtttgtaggttagcgtgtctgctgtctttgacgagtgtaagaaaagtaattaatgcaagcctttattcgtcgcaagccatgttacttatgtatcatgaaacaatcttatttttcaacactttttgttaaaaggtgaacataaattcatattttgtcaacgcacttcactttttacaaattacggcaattagcggatgaattttaagtacaaaatcgcatattggcgaatcacatacaacaaacaaatagttccattatcgaaccaaatattacatGTTAGTAGCTTAGGAT---------AGCAGCTGAG-TTTTAGCGAGCGTAAGAAAAGTAATAAATGCGAGC----------------C-AT-TTA-------------CGAGC-----------------------------------ATTTATTT-------CTTTTCGTTACGAGCCAGAAGGTGAAAATAAAATTAT------GTCATCGCATTCCG--TTTAAC-AAAATACGGCAATAAGCGGAAGAAT---AAGTTCGATTTCGTGTGCTGGACAATCACCTACTAC------A
gi|7 : --C-TACTAC---AAA---GAAATAATTTGTTAATCGAACC-AAATGTTACAACGGTTTTA----------------TGCATTTA---ATGT--TTCTTACCT--ATA-A-CATTTGTTT-------T-A-CTTAATAATTCAGTCACAAAATTTCCTTGCAAATATAGCA--T----T----AACCCCAA--ATCTAAAAAaagaaataatttgttaatcgaaccaaatgttacaacggttttatgcatttaatgtttcttacctataacatttgttttacttaataattcagtcacaaaatttccttgcaaatatagcattaaccccaaatctaaaaaaa
gi|8 : gttagtagcttaggatagcagctgagttttagcgagcgtaagaaaagtaataaatgcgagccatttacgagcatttatttcttttcgttacgagccagaaggtgaaaataaaattatgtcatcgcattccgtttaacaaaatacggcaataagcggaagaataagttcgatttcgtgtgctggacaatcacGCATAGTAA---ATAGCAATTACATTGTTAGTAGCTTAGAAT---------GGTAGCTGTA-CTTTAGCAAGTGTTATAAAAGTAATAAATGCGAGCCATAG------GCCAGC-AT-TTATTACTTTTTGTCACGAGC------------CAA--------AATaa
gi|8 : cctgtgattttgtacagtagaattttatctttgtgtaacttatgataaagttttgggtaagaatAATTACATAGTTAGTAGCTTAGAAT---------GTCAGCTATA-TTTTGGCTCGTG-ACAAAAAGTAATAAATGCTGGCCTATG------GCTCGC-AT-TTATTACTTTTatagctgacattctaagctactaactatgtaattaatttatcatttaacaccattggttttttactaatttttgtttaaaaggcgaacataaatttatattttgtcattgcacttcccctttaacaaaatacg
gi|8 : cctgtgattttgtacagtagaattttatctttgtgtaacttatgataaagttttgggtaagaatgcatagtaaatagcaattacattgttagtagcttagaatggtagctgtactttagcaagtgttatAACAC-CATTGGTTTTTTACTAATTTTTGTT------TAAAAGGCGAACATAAATTTATAT-TTTGTCATTGCACTTCCCCTTTAACAAAA-TACGaatttatcatttaacaccattggttttttactaatttttgtttaaaaggcgaacataaatttatattttgtcattgcacttcccctttaacaaaatacg
gi|9 : cctgtgattttgtacagtagaattttatctttgtgtaacttatgataaagttttgggtaagaatgcatagtaaatagcaattacattgttagtagcttagaatggtagctgtactttagcaagtgttataaaagtaataaatgcgagccataggccagcatttattactttttgtcacgagccaaaatatagctgacattctaagctactaactatgtaattaatttatcatttTTGTT------AAAAAGACGAAAATAAATTTATAT-TTTTTCATTGCACTTCCCCTTTAAC-AAAATACGGCAGTTAGCAGATGAATCTTAGGAACGTCGTTACGTGCTGACGAATCACCTATAGC------A
gi|9 : CGAAT-CACC-TATAGC---AA----GAAATAGTCCGATAATCAAAAC-AAATATTAT--TGCTTTTTTTTTCTTTTTGCTATGGGTATCTT---ATGT--TTTTTAACT--A-A-AATATAGGTTT----T--T-A-CCTAATAACTGAATCA-AATGTTTCCTTGCAAATACCGTA--T----T----AACCCCagaaatagtccgataatcaaaacaaatattattgctttttttttctttttgctatgggtatcttatgttttttaactaaaatataggtttttacctaataactgaatcaaatgtttccttgcaaataccgtattaaccccgtcgattgaaattccatacatgtat