lowQualScore : 22222222222222222222222222222222222222222222222 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111
lowQualScore : 2 66666666666666666666666666666666666666 111 2222222222222222 444444 55555555555555555555555555555555555555555555555 11 2222222222222222222 11111111 11111111111 5555555555555555555 3333333333333 11111 111 2222222 11 1111 2222 2 222222 66666666666 1111 1 2222222222222222222 1111 22 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 11111 777777777777777777777777777777777777777777 1 2222222 777777777777777777777777777777777777777777777777777777777777777777777777 22222222 111 11111 111 8888888888888888888888888888 111 11 333333333 333333333333333333333333333 11 222222 11111111 1111 7777 111 1111 1111 111111111111 1 1 44444 777
lowQualScore : 6 1 3 55 55 5 6 88888888888888888888888888888888888888 5 0 222 4 5555555555555555 999999 7 66 77777777777777777777777777777777777777777777777 6 7 1 55 1 1 3333333333333333333 0 55555555 44 33333333333 2222222222222222222 9999 6666666666666 77777 000 6666666 77 6 99 5555 0 3 7777 0 2 333333 44444444444 0 2222 2 66 0 5 5555555555555555555 1 77 2222 11 1 5 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 5 888 6 5 6 11111 333333333333333333333333333333333333333333 66 4 3 4 1 1 6 5 9999999 6 3 3 222222222222222222222222222222222222222222222222222222222222222222222222 55555555 11 111 66666 3 000 6 0000000000000000000000000000 0 1 222 22 7 2 5 1 22 111111111 6 5 555555555555555555555555555 33 55 999999 77777777 777 3333 0 3333 4 111 6 4 0000 5555 5 666666666666 5 1 9 5 66666 000 6
lowQualScore : . . . .. .. . . ...................................... . . ... . ................ ...... . .. ............................................... . . . .. . . ................... . ........ .. ........... ................... .... ............. ..... ... ....... .. . .. .... . . .... . . ...... ........... . .... . .. . . ................... . .. .... .. . . ............................................................................................................................. . ... . . . ..... .......................................... .. . . . . . . . ....... . . . ........................................................................ ........ .. ... ..... . ... . ............................ . . ... .. . . . . .. ......... . . ........................... .. .. ...... ........ ... .... . .... . ... . . .... .... . ............ . . . . ..... ... .
lowQualScore : 0 6 3 00 00 1 0 66666666666666666666666666666666666666 3 4 555 0 0000000000000000 333333 6 55 55555555555555555555555555555555555555555555555 0 8 0 77 0 4 9999999999999999999 5 77777777 22 77777777777 3333333333333333333 0000 6666666666666 44444 000 0000000 00 6 00 4444 8 2 8888 0 8 666666 00000000000 1 1111 3 77 7 7 9999999999999999999 9 99 1111 00 7 7 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 888 9 2 8 11111 222222222222222222222222222222222222222222 99 0 7 0 4 3 6 7 1111111 0 0 5 000000000000000000000000000000000000000000000000000000000000000000000000 77777777 00 777 77777 3 777 0 4444444444444444444444444444 8 0 000 00 8 2 3 0 22 888888888 0 0 666666666666666666666666666 66 22 000000 44444444 111 8888 8 9999 4 222 0 0 2222 5555 7 555555555555 7 7 2 0 88888 000 0
consensus : NACGACTTCCCACAGAGAT--TT--GAANGATTCA--------TACA--------T---------T-TGTG-AATCATGTC---AT-ATTCTTANTATCGTAT---ATATTTC-TACATTTCTTTAACATGCTCAGAGAACACCTTT---AC---C-------------T-TTGAT--ACACACGT-TG-AACTGACATAATTGCACGCTTA-TTACAATGCTGNTAAACTA-T--C------TACTGGTCAATCACGACCTAC-GTT-------AAT-AAAA--AA--T-AAAT------AATA-AAGTAAA--A--NAGAAA--ATGCGAAAC---T-TTT---TC-------TTTCATTCATTTCGCTC--TTT-C--TTTCATTCCAAACTCATTCATATGATCAAAATATATTACACAGN-----AAATTCA-NA-CTTT---GGATTACGACACGT----CAGGTTTCAGTAATTATAACCCCCTACT-GATGAACAATTTAT-----NT-ATTTGAT--AT-G-TTTTAACCAG-TAAC-----N-ACGC--TGC---------------A-T---------------ACGATA---A-T-A-T--A--TAAA---A---A---------------------A-A--------CATG------CAT-TGC---ACCGATCTCGCTATTCAGAAGAATTCGTTCCAGG-----CAGA---T---G---AG----G------TT------T-------CC--ATCATAATCGCTG-CAAGAT-CATAAAT-NATGCTGCGCGTTANACGA---------AT---------C---------CN--TCCG-------------AT-------A-------T-C-ATGGTTCC-AACA---TATA---TGGTTGCAACC-----CTCATTTNAATTAAAT---A------GTTTAATTTACCC-GATATTTTAATCGTAATAACCT--TTACAACAAATTGCAGCGCGCC-NACATTGACGTCA---CANTTAAGGGAGATAAGCGAGG-CAAAC-TTTT--TTT-AG-CGCCAGG-GCT-TTAAGTTTTACCTGCA--A---TTACTAGT-------NCTTCGAACAGGAATAAA--CCTTCGGATTA-GCATATTTC--GGCAATGTTTTAA-TGG--TATTT-TTTTGATTT-TNGAGNC-T-AAT-AAACTATTTATTTTCATTGCTTATGACCTTTAAAGTAAGCAAAT---TATAAA
Reference ( gi|1 ) : TATGACATTCCACAGAGAT--TT--GAACGGTTCA--------TATA--------T---------T-TG---AACCATGTC---AT-ATTCGTATTATCAAAT---GCATT-C-TTTATTTCTTCAACATATTCAGAGAACACCTTT--TAC--ACCCTTAAACTT-CCT-TTGAT--ATACACCCTTA-AACTGGCATAACTACACGCTTT-TCACAATACTGATACACTA-T--C------TACTGGTCAATCACGACCTAC-ATT-------AAT-AAAAT-AA--T-AAAT-----TGATA-AGGTAAA--A--AAGAAA--ATGCGAAAC---T-TTT---TC-------TTTCAACCATTTCGCTC--TTT-C--TTTCATTCCAAACTCATTCGTATGATCACAATGTATTACACGGT-----AAATTCA-GA----T---GGATTACGACACGT----CAGGTTTCAGTTATTATAGCCCCCTACT-GATTAACAATTTAT-----AT-ATTTGAT--AT-G-TTTAAACCAG-TAAC-----G-ACAC--TGC---------------A-T---------------ACGATA---A-T-A-T--A--TAAA---A--AA-----------------A---A-A--------CATG------CAT-TGC---ACTGATCTCGCTATTTAGAAGAATTCGATCCAGG-----CATA---T---G---AG----A------TT------T-------CC--ACCATGATCGCTG-CAAGAT-CATGAATTAATGCCACACGTTAAACAA---------AT---------C---------CC--TCCA-------------AT-------A-------T-C-ATGGTTCC-ATCA---TACA---TGGTTGCAACC-----CTCGTTTCAGTTAGAT---A------GTTTAATTTACCGAGATATCTTAATCGTAATAACCT--TTACAACAAGTTGCAGTGTGTC-TACATTGACGTCA---TAGGTGAGGGAGATAAGCGATG-TAAAC-TTTTAATTT-AGACGTTAGA-GCTCTTAAGTTTTATCTGCA--T---TTACTAGT-------ACTTCAAGCAGGAATACA--CCTTC----TA-GCATATTTT--GGCAATGTTTTAA-TAG--TATTT-TTTTGATTT-TAGAGAT-T-AAT-AAACTATTTATTTTCATTGCGTATGAACTTTACCATAAACAAATCGATATGAA
gi|4 : ACGACTTCCTACAGAGAT--TT--GAACGATTCA--------TATA--------TGCATACAG-C-TA---AATCATGCC---AT-ATTCTTAATATCATAT---GCATTTC-TACATTTCTTTAACATGCTCAGAGAATACCT--------------------------TTGAT--AGACACCCTTG-AACTGACATAACTACACGCTTA-TTACAATACTGATACAATA-A--A------AAATGGCCAACCACGACATAC-ATC-------ATT-AAAG--AA--T-AAATAC---AAATA-CAGTAAA--A--CA-AAG--ATGCAAAAC---T-TTT---CA-------TTT-AATCATTTTGCCCTTTTT-T--TTTCATTCCAAA---AATCATATGATCAAAATGTATTACACAGT-----ATATTCA-GATCTTT---GGA-----ATACGT----CAGGTTTGAGTGATTATAA-ACCCTGCT-GATGAACACTTTATTTCAAATCATTTGAT--AT-GTTTTAAACC-G-TAACTAAATGTACGC--TGCATCGTGCAGAGACATA-T---------------ACGATA---ATT-A-T--A--TAA---------------------------------------------------TAT-T-------TGTTCTCGCTATTCAGAAGAATTCGTTCCAGG-----CAGA---T---G---GG----
gi|2 : gGACTTTCCACAGAGAT--TT--GAAAGATTCA--------TACA--------TGCAATCATTTGTG---AATTATGTC---CT-GTTCTTATAATAATAT---ATATT--------TTCT--AA---ATTTA---------TTT--AAC--ACC------------T-TTGAT--ACAAACG---G-GACTGACATAATTGCACGTTTA-TCACAATACGGGTGAACTA-TAACTATATATATTGGCCAATCCCAACTAAC-GTT-------AGT-AA---------------------ATA-AAGCAGG--A--CCAATG--ATGCG--AT---TGTTT---TCTTTATTATTTTATTCATTTCATTCA-TTTGCCATTCCATTCTAAACTCATT-ATGTGATGA-AGTGTATTACACAGCCAAAAAAAATCA-CA----TTTCGGACTACCACTCGT----Ctata
gi|12 : gcacggggGACTTCCCACGGATAT--TTTTAAAGGATTCACACATGCATATA--------T---------T-TGTGCAAC-ATATC---CT-ATTCTTAATATCGTAT---ATATTTC-TATATTTCTTTAACATGCTTAGAGAACAC-------------------A------T-TTGAT--ACACACAT----AACTGACATAATTACACGCTTA-CTACAATGATGTTAAATAA-T--C------TACTGCT----------CTAC-GTT-------GA--AAAAT-AG--T-AAAT-----GAATACAAATAAA--ctatttgatgccagtgactattctgcaccgtgcagagacgcaaaacatatgtgtttgtatgcaccgatgaattcgttccagaagtgtcgtttaagcattataataactgacaaatcgtaaatgctacgctgaaacgaaccagtttgactctttcattccatggttcctatatataagattgcaaccctcatttaaattaaatatttgatcataataaccttttaaaccatttgcagtgtgccgacattgacatgatatgcgtgataacctttcgccaggtgctaagttttacctgtaattaccagttctttgaacagtaattattttagggctgaattaactatttattttcatttcttatgaccttta
gi|21 : taaatgggaataaaggtcaatgcaatgcataacatgtcatagttgacaacctgtacttggtgcaaaaatctcactagttagatgcatgaatgacatcataaaactactttgtaacgaaaggtgcagcaacatgaaccactttaccacggcacagagGAC-TTCCTCAGAGAT--TT--GGACGATTCA--------TA------------------------------CATG-C---AT-A-------------------CATT---------TCTTTAACATGCTCAGAGAACACC-----TAC--------GAAC---------------CACACGTTTG-GACTGATATAA-TGTACACTTA-TCACGATGCTG-------A-T--C------TACTGGCCAATGACGTCCTACAAAT-------AAT-AAAAA-AAGTT-AAATACAAATGA-A-ATATAAAT-A--AAGA
gi|15 : acagagGACTTCCCACAGAGAT--TT--GAAGGATTCA--------TACA--------T---------t
gi|5 : ctcccactgcccaaactcctacgcataaggtaataaaagacggaccacagaggttttcattcatgaaaataaaggtcatatacccagtacttttcgatgagaaaaagttcactagtcagatgcatgaatatgactgcgtaaaacttcagtaattttgtacagaatggaactcaaactcacaacatcaggctgtagcagggaccactaggccacggcacacagTCCCACAACCAT--TT--GAACGATTCA--------TACA--------TACATAGAT-T-TG---AATCATGCC---AT-ATTC---TTAGCATTT---GCATTTC-TCAATTTCTTAAACATACTCAGAGAACACCT--------------------------TTGGT--ACACACCTTTG-AACTGACGTAACTACACGCTTA-TTACAATACTGATGCACTA-T--C------TACTAGTCATTCACGACCTAC-AGT-------AAT-ACAA-------------------ATA-AGATAAA--A--CA-AAA--ATGCAAAAC-----TTT---TC-------TTGCAACCATTTCGCTC--TTT-C--TTTCATACCAAACTCATT-ATATGATAAAAATATATTAAACAGT-----AAATTAA-CATCTTT---TGATCACGACACGT----CAGGTTTCAGTAAATATAACCCCGTACTGGAGAAACTATTTAT-----TT-ATTTGAT--AT-G-TTTTAACCAG-TAAC-----T-TCAC--TGC---------------A-A---------------ACGATA---A-T-A-T--A--TTAGGCTA--TA-----------------T---A-ATATGTTT-CATG------CAT-TGC---GCAGATCTCGGTATTTAAAAGAATTTGTTCCCTG-----CAGA---T---G---AG----A------TT------T-------CC--ACCATgcatacatttg
gi|3 : TCCCATAGAGAT--TT--GGAGGAGTCA--------TATA--------T------------GC--AATCGTGTCCCTAT-ATTC---TTATCTTAT---ATATTTC-TACATTTCTTTAACATGCTCAGAGAACATATTT--GAC--ACC---AAA---------------ATG----------ACTAATATAATTTCACAATTA-TAACAATACTGATAAACTA-T--A------TACTGGTCTATCAAAACCTTC-GTT-------AAT-AAAAA-AAA-T-AAAC-------ACA-AA-TAAAGGA--AAATAATCATGCGACA----T-TTT---TC-------ATGTATTCATTTCACTC--TAT-T--TTTTATTCCAAATTCATT-ATATGATCCAAATATGTTACACAAG-----AACTTCATAA----TATAGGATTACGACGCGT----CATGATTCAGTAATTGTAACCCCGTACT-GATGAACACTATGT-----TT-ATTTGTT--AT-T-TTT--ACCAG-TAAG-----C-ACGC--TGC---------------A-TCATGCAGAGACACTAACGA-A---A-T-A-T--ATTTATA---A--TA-----------------T---A-ATATTTTTTCATG------CAT-TGC---ACCGATCTCGCTATTCAAAAGAATTCGTTCCAGG-----C------T---G---AA----C------AT------A-------CT--ATTGCGATATCTG-CCAGAG-CATA----GATGCTATACGATACACGA---------ATCAGTGTGACC---------CT--TCTC-------------AT-------T-------C-C-ATGGTTCC-GTCA---TTTA---AGGTTGCAACT-----CCCATTTCTATTAAAT---A------GTTTCATTTACCTTGATATTTTAATTGTAATAACCT--TAACAACAAAT
gi|10 : aggattTCCCACGGATATGTTT--AAAGGATTCACACATGCATATA--------T---------T-TGTG-CATCATGTC---AT-ATTCTTTATATCGTAT---ATATTTC-TATATTTCTTTAACATGCTTAGAGAACACATTT--CAT--AC----------------------ACACAT------AACTGACATAATTACACGCTTA-CTACAATGATGTTA-AATACT--C------TACTGCT----------CTAC-GTT-------GG--AAAAT-AG--T-AAAT-----AAATACAAATAAA--gactagt
gi|8 : aaatgggaataaaggtcaatgcaatgcataacatgtcatagttgacaacctgtacttggtgcaaaaatctcactagttagatgcatgaacgactgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntTCCCACGGAGAT--TT---AATGA---A--------TATG--------T---------T-TGTG-CATCATGTCCT-ATTATTTATATCATAAAATTATATATTTC-TACATTTCCTTAACATGCTCAGAGAACA-------TA------------------T-TTGAT--ACACA----TATAACTGACATA---------TTTATTAAAATGCTGTGAAATTG-T--C------TACCGATCAATCACAACCTAC-GTTTAAAAAGAAC-AAAA--AA--TAAAAC-----CAATG-AAATATA--ACCAAG-----ATGCGAAAC---A-TTT---c
gi|20 : aaattggaatgaaggccaatgtaatgcataacaggtcatatttgacaacctgtacttttggtgtaaaacaactcactagtcatatgcatgagcaactgcgtagaactacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntTCCCACAGAGAT--TT--AAACTATTCG--------TACACGCTTACAT---------T-TT---AATCATTCT---AT-ATTCTTATTATCTTAT---ACATT-TATACATTTCTTTAACATGCTCAG-----ATCTTTAATGCGTACCTTTGAACTGACATATTGATGAATACACTTTTcaaaccaatc
gi|25 : TCCCACAGAGAT--TT--GAAAGATTCA--------TACA--------T---------tatttccattgctatgacctttaaagtaaatacagtggacaaatatttc
gi|11 : catagaggattCA--------TATA--------T---------T-TGTG-CATCATGTC---CT-ACTCTTGATATCGTAT---ATATTTC-TATATTTCTTTAATATGCTTAGAGAACAC-------A------------------T-TTGAT--GCACACAT----AACTGACATAATTACACGCTTA-CCACAATGATGTTAAATAA-T--C------TACTGCT----------CTAC-GTT-------GA--AAAAT-AG--T-GAAT-----AAATA-gcatacacagcctttgattttttgctctgattaaatacatgtaatagttattcttgtgattttattt
gi|17 : taaatgggaataaaggtcaatgcaatgcataacatgtcatagttgacaacctgtacttggtgcaaaaatcatctcactagttagatgcatgaacgactgtataaaactactttgtaatgaaagaaacttacccacacaacatcagtagtgagagataagtgacctcggtgcagcaacatgaaccactttaccacggcacagaggacttccggatatttttaaaggattcacacatgTTCTTTAACATGTTCAGATAACACGTTT--------------------------GAT--ACACACA---G-AAATGACATAAGTGCAC------TCACAACACTGATCAACTA-T--C------TACTTGTCAATCTCAACCTAA-GTT-------GAT-AAGAA-AA--T-ACAC-------ATT-AAGTAAA--A--CA-AAT--ATGCGAAACACAT-TTT---caaattaa
gi|9 : atggacattcacataaatagcggctagtgatttttttctgtttaatggtatcaaagaaataatttctgtttccagCT-TTGAT--ACACACAA--A-AACTGACATAATTGCACGCTTT-ATACAATA-----------------------------CAAT---AACCTAC-AAC-------AATGAAAATAAA--T-AAA-------AATA-AAGTAAAT-C--AAGATA--A---GAAAC---T-TTTAACTC-------TTTCATCTTTTTTATTC--TTT-C--TTTCTTTCC-GACTCA-GCATACAATCGAAATAAATTACATGGG-----GAATTCA-TAGTTTT---GGATTACGCCACGTGCGCCAATTCTCAGTAATCATGACCCACTACT-GATGAA-----TAC-----A-----------AG-G-TTT--ACCTGCTAAT-----G----T--TGC---------------C-T---------------A-GGTA---A-TAA-T--A--T--------------------------------T-A--------CAT---------T-TGA---ATCGATCTCGCTACTCAGAAGAATTCGTTTCCGG-----CAGATGTT---G---AG----GGTTGT-TT------T-------CCAGATCATAAATGCTG-CATGTTACACGAATCAagcaa
gi|6 : atgctcatataaca----T---GGATTACGACACGT----CAGGTTTCATTAATCATAACCTGCTACT-GTTGAACAAATCAT-----GT-ACGTGTT--AT-GATTTA--CCAG-TAAC-----T-TCAC--TTCCCCGTGAAGAG----A-C---------------ACGAAAGAAA-T-A-T--AC-TATA---ATCAT-----------------ATTCA-A--------TA---------AT-TTCTTTACCGATCTCGCTATTCAGAAAATCTCGTTCCGTG-----CATA---TATTG---AG----TGTCGTTTT------T-------CC--ATAATAATTACTGACAA-AT-AATAAATTTATGCTACACGTTAAACAA---------AT---------C---------AG--TCTG-------------ACC------A-------T-GGATGGTTCC-AACA---TGTA---TGAT-GCAACC-----CCTATTTAAATTAAAT---A------GTTTA-------------TTTTAATCGTAATGACCT--TTACACCAAATTGCAGCGCGTC-GGCATTGACGTCA---CATTTAAGAGAGATTAGCAATG-TCAAA-TTTTgccgggtccctctcaatctattgtt
gi|24 : tcattttGATTACGACACGT----CAGGTTTCAGTTATTATAACCCACAACT-GATGA------TAA-----AT-ATTTGATTGATAG-TTTTAACCAA-CATC-----C-ACACAGTAC---------------ATT---------------GCGGTG---A-C-A-CGGA--CAAA---A--cgaacagtaataaaccttcggattagcatatttcggaaatataataaactatctattttcattgtttatgacct
gi|14 : ttgcATTATAAACCCCATCT-TATGAATAATATAT-----TT-ACTGAAT--A--G-TTTTAACTAG-TAAT-----T-ACAC--TAC---------------AGC---------------ATGA-A---A-T-ACT--A--CAAACA-A--AATATACCATAATTATTGTA---ATA--------CATTATTATTCAT-TGC---ACAGATCTTACTATGCAGAAAAAGTTGTTCAAGG-----CAGATGTT---G---AGTGTCG------TT------TTTTTTTACC--GTCATAATTGTTG-TCAGAT-CATA----AATGCTGCATGTTACATGATTCAGCTTGAT---------C---------CCTGTCC--------------AT---------------T-C-ATTGTTCA-A-------ACA---TAATT---ACCTGTGTCTTGTTTCAACTAtatacgataagcatactatatttcca
gi|13 : a--------CATG------CAT-TGT---ACCGATCTCACT-----------------CCAGG-----CAGA---T---GTTGAG----G------TTCGTTTTT-------CC--ATCATACTCGCTG-CAAAAT-CA--AA--AATGCTGCACGTTACACGATATGA----AT---------C---------CC--CCCACTCCCCCGCACCCATCCACCTCA-------T-CCATTGTTCC-AACA---TATA---TGGTTGCGATC-----CTCATTT-AATTAAAT---ACTAGTAGTTTAATATCCCC-GACATCTTAAACGTAATAACCAAATTACAACAAATTGCAGAAAGCA-TACCTTGATGTCA---CAGTTTAGGGTAATAAGCGAGG-CAAA
gi|16 : cagacagatgttgcactgagcctagatacgaacaagactacaataatcattataatatatttt--------CATG-------ATGTGC---ACCGATCACGCCATTCGGAAGAATTCGTTCCAGA-----CAGA---T---G---
gi|2 : agtaacaattattctgtactgcagatggacggtataaattgaccagtaacaacaataccgtactgtgcagagacacatatatagactactcgtatatacgttaatcatttataatattttGATGAATTCGTTCCAGAAGTGTCGTT---T---A---AG----------------------------C--ATTATAATAACTGACAA-AT-CGTAAAT----GCTACGC-TGAAACGA---------AC---------CAGTTTGACTCT--TTCA-------------TT---------------C-C-ATGGTTCCTAT-A---TATA---AGATTGCAACC-----CTCATTTAAATTAAAT---A-------------------------TTTGATCATAATAACCT--TTTAAACCATTTGCAGTGTGCC-GACATTGACAT----------------GATATGCG-TGATAACC-TTT----------CGCCAGGTGC---TAAGTTTTACCTGTA--A---TTACCAGT-------TCTTTGAACAGTAAT--------------------TATTTTAGGGC--TGAATTAA-C----TATTTATTTTCATTT-ttgcactgagcctagatacgaacaagactacaataatcattataatatattttcatgcattgtaccgatctcactccagg
gi|7 : gcacgggggactttccacagagatttgaaagattcatacatgcaatcatttgtgaattatgtcctgttcttataataatatatattttctaaatttatttaacacctttgatacaaacgggactgacataattgcacgtttatcacaatacgggtgaactataactatatatattggccaatcccaactaacgttagtaaataaagcaggaccaatgatgcgattgttttctttattattttattcatttcattcatttgccattccattctaaactcattatgtgatgaagtgtattacacagccaaaaaaaatcacatttcggactaccactcgtcctatttgatgccagtgactattctgcaccgtgcagagacgcaaaacatatgtgtttgtatgcacc------TT------T-------CG--ATCATAATCGCTG-CCAGAT-CACAAATTCATGCTGCGAGTTAAAGGA---------AT---------C---------AG--TCTG-------------AT-------AGTTTTTTTAC-ATGGTTCC-AAAAGGGTGCAATGTGGTTGTAACC-----ATCATTGTAATTAAATTATG------GTTTAATTTATCCCGATATCT--------------------CAACAAAGTCCAGCACGCC-CACATTTAGGTCA---CATTTAAGAAAGATAAGCGAGG-TAAACATTTT--TTTAAGA---TAG-------TAA-----AACTGAA--A---GTACTAGT-------TCTTCGAACAGGAATAAA--CTTTCGGTTTA-GCATATTTA--GAAAATTATTTAA-TGA--TATTT-TTTT-AC-------GGC-T-GATAAAACTATTTATTTTCATTGCTCATGActtatgaccttta
gi|18 : aaataattataggataatcatacatgatagtatttcatttcacctatatctctattaagaagagcgtattccgggttcaatatatggagtgtcattatcgaatgtccttCAGTGCGCC-GACATCGACGTTA---CATTTAAGGGAAATAAGCCAGG-TAAAC------ATTT-------------CT-TTAAG----AT-TGCAAATAGATTATTAGT-------TCTTCGAACAGGAATAAA--ACTTCGGATTA-GCATTTTTA--AGAAATGTTTTAT-TGG--TATCT-TTTAATTTT-TTGAGCC-G-AAT-AAACTATTCATTTTTATTGCTTATGGCCTT-----TAAGCAAAT---TATAAAct
gi|19 : ttGCGTCGTA-ATTGATGTCA---CAGTCAAGGAAGATAAGCGAGA-CTAAC------ATTT-GGCC-----A-GGTGTTACACTTTACCGACA--A---TAATAAGT-------ACTTCTGACAGGAACAAA--CCATCGGATTG-GCATATTTC--GGCAATGTTTTGA-TAA--TA-TA-TTTCGATTT-t
gi|23 : ccgagatctaaattatacaaacaTTGACGTCAAATTAAGGGAGGGATATAATTGAGA-CGAAC-TTCT---------CGCCGGG-GTTTACAA--TTTACCTGCA--------AATAGG-------AAGTTAGACAGGAATAAC--CCGTCGGAATA-GCATTTGTC--AGCAATGTTTAAA-TGG--TA-TA-TTTTGATTCATAG-GAC-T---T-AAAC-ATTTATgtttccattaataatgacct
gi|26 : GATGGAAACAAGCGATG-CATAC-TTTT--TTA-AGACGTTAAA-ACTCTAAAGTTTTACCTGCA--T---TTACTAATACTTCGAACTTCGAACAGGAATAAA--CCTT
gi|27 : GTTTTAATTGCA--A---TTGCTAGT-------ACTTCGGACATGAA-ACAGTCCGTCGGA-TAAGCATCTTTT--GGCAATGTTTTAA-TGT--TCTCT-TTT
gi|30 : TTTGCA--A---TTACTCGT-------GTTTTGAATAGGAATAAA--CCTTCGGATTA-GCACATTTagg
gi|28 : tcttttagagtgtaaaacACTAGT-------GCTTCGAACAGGAATTAA--TCTTCGGAGTA-GCATA---C--GACACTG--TTAATTGG--TA-TT-TGTTGATTT-T
gi|6 : acaaatgTTCGAACAGTAATAAA--CCTTCGGATTA-GCATATTTC--GGAAATA---TAA-TAAACTATCTATTTTCATT
gi|29 : tcatttttggattacgacacgtcaggtttcattaatcataacctgctactgttgaacaaatcatgtacgtgttatgatttaccagtaacttcacttccccgtgaagagacacgaaagaaatatactataatcatattcaataatttctttaccgatctcgctattcagaaaatctcgttccgtgcatatattgagtgtcgtttttccataataattactgacaaataataaatttatgctacacgttaaacaaatcagtctgaccatggatggttccaacatgtatgatgcaacccctatttaaattaaatagtttattttaatcgtaatgacctttacaccaaattgcagcgcgtcggcattgacgtcacatttaagagagattagcaatgtcaaattTTTC--AGCAATGTTTTAA-TGG--TA-TA-TTTTGATTT-TTAAGGC-TGAAT-GAACAATTCATTTTCATTGCTTAgtttatgacct
gi|2 : cttTTTGAA-CAG--TAATT------ATTT-TAGGGCT-G-AAT-TAACTATTTATTTTCATTTCTTATGACCTTTA
gi|6 : gcacgggggactttccacagagatttgaaagattcatacatgcaatcatttgtgaattatgtcctgttcttataataatatatattttctaaatttatttaacacctttgatacaaacgggactgacataattgcacgtttatcacaatacgggtgaactataactatatatattggccaatcccaactaacgttagtaaataaagcaggaccaatgatgcgattgttttctttattattttattcatttcattcatttgccattccattctaaactcattatgtgatgaagtgtattacacagccaaaaaaaatcacatttcggactaccactcgtcctatttgatgccagtgactattctgcaccgtgcagagacgcaaaacatatgtgtttgtatgcaccgatgaattcgttccagaagtgtcgtttaagcattataataactgacaaatcgtaaatgctacgctgaaacgaaccagtttgactctttcattccatggttcctatatataagattgcaaccctcatttaaattaaatatttgatcataataaccttttaaaccatttgcagtgtgccgacattgacatgatatgcgtgataacctttcgccaggtgctaagttttacctgtaattaccagttcATTT-CGGAAATAT-AAT-AAACTATCTATTTTCATTGTTTATGACCT
gi|20 : tcatttttggattacgacacgtcaggtttcattaatcataacctgctactgttgaacaaatcatgtacgtgttatgatttaccagtaacttcacttccccgtgaagagacacgaaagaaatatactataatcatattcaataatttctttaccgatctcgctattcagaaaatctcgttccgtgcatatattgagtgtcgtttttccataataattactgacaaataataaatttatgctacacgttaaacaaatcagtctgaccatggatggttccaacatgtatgatgcaacccctatttaaattaaatagtttattttaatcgtaatgacctttacaccaaattgcagcgcgtcggcattgacgtcacatttaagagagattagcaatgtcaaattttcgaacagtaataaaccttcggattagcatGAT-G-AAT-ACACTTTTTATTTCCATTGC-TATGACCTTTAAAGTAAATA
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|22 ): GAGAAGAAACTCTAAGTCAGATACATGAACATGACCAAGTATAACTGCCATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACTTTCCACGGGGATTCGAAGGATTCATACATGCAGACATCTTTAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 66666666666666666666666 8888888888888888888888 333333 11111111111 11111111111111111111111 3333333 222 11111 2222222 11 1111 1 111111 22 1111 11111 111111 1 1111111 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1111111 7777777777777777777777777777777777777777777777 1 33333 1111111111111111111111111111111111111111111111111111111111111111 1111111 3333333333333333333333333 888888888888888888888 11111 11111111 11111111111111111111111111 11111 333
lowQualScore : 33 77 1 555 11111111111111111111111 7777 4 6 999999 1 3 7777 7777777777777777777777 6 111111 1 1 4 2 11111111111 33333333 0 3 99999999999999999999999 555 7777777 3 3 444 3 44444 888 1111111 7 55 1111 1 5 2 777777 1 77 5 5 0000 22222 0 5 1 66 1 222222 0 33 2222222 3 99 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 666 55 3333333 666 666 2222222222222222222222222222222222222222222222 66 33 0 3 4 88888 2 1 6666666666666666666666666666666666666666666666666666666666666666 8888888 7 6666666666666666666666666 1 99 1 0 5 1 1 1 2 9999 4 5 222222222222222222222 777 0 1 00000 44444444 3 3 3 3 44444444444444444444444444 77 0 0 77777 555
lowQualScore : .. .. . ... ....................... .... . . ...... . . .... ...................... . ...... . . . . ........... ........ . . ....................... ... ....... . . ... . ..... ... ....... . .. .... . . . ...... . .. . . .... ..... . . . .. . ...... . .. ....... . .. ........................................................................................................................ ... .. ....... ... ... .............................................. .. .. . . . ..... . . ................................................................ ....... . ......................... . .. . . . . . . . .... . . ..................... ... . . ..... ........ . . . . .......................... .. . . ..... ...
lowQualScore : 99 99 0 000 11111111111111111111111 6666 9 4 666666 3 3 1111 3333333333333333333333 2 888888 9 2 2 3 00000000000 22222222 4 3 55555555555555555555555 888 8888888 3 6 222 2 11111 888 7777777 8 88 2222 0 0 5 777777 0 88 0 0 6666 55555 1 0 4 99 0 888888 0 88 5555555 0 55 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 444 00 6666666 444 444 7777777777777777777777777777777777777777777777 11 66 0 0 5 55555 0 0 2222222222222222222222222222222222222222222222222222222222222222 6666666 5 0000000000000000000000000 5 22 4 4 7 7 0 4 8 4444 4 0 777777777777777777777 666 1 4 00000 00000000 6 4 6 6 99999999999999999999999999 22 4 1 99999 000
consensus : NACGACTTCCCACGGAGAT--TT--GAANGATTCATACA---T--------T---TGTG------AATCATGTC---ATATTCTTAATATCGTA------TACATTT-CTA----CATTTCTTTAACATGCTCAGAGAACAC---T-----------A-----TTTGATACACA-CA-TT-GAACTGACATAATTGCACGCTTATCACAATACTGNTAAACTA-T--C------TACTGGTCAATCACGACCTAC-GTT-------AATA--A-A-A-----AA---TAAA--T---AATA-AAGTA-AAACA-AAGATGCGAAAC---T-TTT---TC-------TTTCATCCATTTCGCTC--TTT-C--TTTCATTCCAAACTCATTCATATGATCGAAATGTATTACACGG-----NAAATTCANA-CT-TTG-GATTACGACACGT----CAGGTTT-----CAGTAATTATAACCCCCTACT-GATGAACAATTTATTT------ATTTGATATGTTTTAACCAGTAAC------TACGC--TGC---------------A-----------T---------------ACGA-TA---A-T-A----T--A-T--A----AA-------ATAA--------CATG------CA----T-------TGC---ACCGATCTCGCTATTCAGAAGAATTCGTTCCAGG--CAG---A---T---G---AG----G-----T--------------------T------T-------C--CATCATAATCGCTG-CAAGATCATAAA-T--ATGCTGCACGTTANACGA---------AT---------CC--GTCCG-------------AT-------A-------T--C-ATGGTTCCAA-------CATATATGGTTGCAACCCTCATTTNAATTAAAT---A------GTTTAATTTA-CC-CGATATCTTAATCGTAATAACCT--TTACAACAAATTGCAGCG-CGCCNACATTGACGTCACANTTAAGGGAG----ATAAGCGA-GGCAAAC-TTTT--TT-AG-CGCCAGG-GCT-TTAA-GTTTTACCTGCAA-----TTACTAGT-------NCTTCGAACA-GGAATAAACCTTCGGATTAGCATATTTCGGCAATGTTTTAA-TG-GTATTTTT---TTGATTT-TTGAGGCT-AAT-AAACTATTTATTTTCATTGCTTATGACCTTTA--GTAAGCAAATCGATATGAA
Reference ( family-4477 ) : NACGACTTCCCACAGAGAT--TT--GAANGATTCATACA---T--------T---TGTG------AATCATGTC---ATATTCTTANTATCGTA------TATATTT-CTA----CATTTCTTTAACATGCTCAGAGAACACCTTT-----------AC---CTTTGATACACA-CG-TT-GAACTGACATAATTGCACGCTTATTACAATGCTGNTAAACTA-T--C------TACTGGTCAATCACGACCTAC-GTT-------AATA--A-A-A-----AA---TAAA--T---AATA-AAGTA-AAANAGAAAATGCGAAAC---T-TTT---TC-------TTTCATTCATTTCGCTC--TTT-C--TTTCATTCCAAACTCATTCATATGATCAAAATATATTACACAG-----NAAATTCANA-CT-TTG-GATTACGACACGT----CAGGTTT-----CAGTAATTATAACCCCCTACT-GATGAACAATTTATNT------ATTTGATATGTTTTAACCAGTAAC------NACGC--TGC---------------A-----------T---------------ACGA-TA---A-T-A----T--A-T--A----AA-------AAAA--------CATG------CA----T-------TGC---ACCGATCTCGCTATTCAGAAGAATTCGTTCCAGG--CAG---A---T---G---AG----G-----T--------------------T------T-------C--CATCATAATCGCTG-CAAGATCATAAA-TN-ATGCTGCGCGTTANACGA---------AT---------CC--NTCCG-------------AT-------A-------T--C-ATGGTTCCAA-------CATATATGGTTGCAACCCTCATTTNAATTAAAT---A------GTTTAATTTA-CC-CGATATTTTAATCGTAATAACCT--TTACAACAAATTGCAGCG-CGCCNACATTGACGTCACANTTAAGGGAG----ATAAGCGA-GGCAAAC-TTTT--TTTAG-CGCCAGG-GCT-TTAA-GTTTTACCTGCAA-----TTACTAGT-------NCTTCGAACA-GGAATAAACCTTCGGATTAGCATATTTCGGCAATGTTTTAA-TG-GTATTTTT---TTGATTT-TNGAGNCT-AAT-AAACTATTTATTTTCATTGCTTATGACCTTTAAAGTAAGCAAAT---TATAAA
gi|1 : ATGACATTCCACAGAGAT--TT--GAACGGTTCATATA---T--------T---TG--------AACCATGTC---ATATTCGTATTATCAAA------TGCATT--CTT----TATTTCTTCAACATATTCAGAGAACACCTTTTACACCCTTAAACTTCCTTTGATATACA-CCCTT-AAACTGGCATAACTACACGCTTTTCACAATACTGATACACTA-T--C------TACTGGTCAATCACGACCTAC-ATT-------AATA--A-A-AT----AA---TAAA--TT--GATA-AGGTA-AAAAAGAAAATGCGAAAC---T-TTT---TC-------TTTCAACCATTTCGCTC--TTT-C--TTTCATTCCAAACTCATTCGTATGATCACAATGTATTACACGG-----TAAATTCAGA-----TG-GATTACGACACGT----CAGGTTT-----CAGTTATTATAGCCCCCTACT-GATTAACAATTTATAT------ATTTGATATGTTTAAACCAGTAAC------GACAC--TGC---------------A-----------T---------------ACGA-TA---A-T-A----T--A-TAAA----AA-------AAAA--------CATG------CA----T-------TGC---ACTGATCTCGCTATTTAGAAGAATTCGATCCAGG--CAT---A---T---G---AG----A-----T--------------------T------T-------C--CACCATGATCGCTG-CAAGATCATGAATTA-ATGCCACACGTTAAACAA---------AT---------CC--CTCCA-------------AT-------A-------T--C-ATGGTTCCAT-------CATACATGGTTGCAACCCTCGTTTCAGTTAGAT---A------GTTTAATTTA-CCGAGATATCTTAATCGTAATAACCT--TTACAACAAGTTGCAGTG-TGTCTACATTGACGTCATAGGTGAGGGAG----ATAAGCGA-TGTAAAC-TTTTAATTTAGACGTTAGA-GCTCTTAA-GTTTTATCTGCAT-----TTACTAGT-------ACTTCAAGCA-GGAATACACCTTC----TAGCATATTTTGGCAATGTTTTAA-TA-GTATTTTT---TTGATTT-TAGAGATT-AAT-AAACTATTTATTTTCATTGCGTATGAACTTTACCATAAACAAATCGATATGAA
gi|10 : tTTCCCACGGATATGTTT--AAAGGATTCACACA---TGCATATATT---TGTG------CATCATGTC---ATATTCTTTATATCGTA------TATATTT-CTA----TATTTCTTTAACATGCTTAGAGAACACATTT------------C--------ATACACA-CA-T---AACTGACATAATTACACGCTTACTACAATGATGTTAAA-TACT--C------TACTGCT----------CTAC-GTTGGAA---AATA--G-T-A-----AA---TAAA--TACAAATA-AA
gi|11 : aaatgggaataaaggtcaatgcaatgcataacatgtcatagttgacaacctgtacttggtgcaaaaatctcactagttagatgcatgaacgactgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGACTTCC---GGATAT--TTTTAAAGGATTCACACA---TGCATATATT---TGTG------CATCATGTC---CTACTCTTGATATCGTA------TATATTT-CTA----TATTTCTTTAATATGCTTAGAGAACAC---------------A-----TTTGATGCACA-CA-T---AACTGACATAATTACACGCTTACCACAATGATGTTAAATAA-T--C------TACTGCT----------CTAC-GTT-------GA-A--A-A-ATAGTGAA---TAAA--T----ACA-AATTA-Ac
gi|12 : taaatgggaataaaggtcaatgcaatgcataacatgtcatagttgacaacctgtacttggtgcaaaaatcatctcactagttagatgcatgaacgactgtataaaactactttgtaatgaaagaaacttacccacacaacatcagtagtgagagataagtgacctcggtgcagcaacatgaaccactttaccacggcacagagGACTTCCCACGGATAT--TTTTAAAGGATTCACACA---TGCATATATT---TGTG------CAACATATC---CTATTCTTAATATCGTA------TATATTT-CTA----TATTTCTTTAACATGCTTAGAGAACAC---------------A-----TTTGATACACA-CA-T---AACTGACATAATTACACGCTTACTACAATGATGTTAAATAA-T--C------TACTGCT----------CTAC-GTT-------GAAA--A-A-T-----AG---TAAA--TG--AATACAAATA-AA
gi|13 : taaatgggaataaaggtcaatgcaatgcataacatgtcatagttgacaacctgtacttggtgcaaaaatctcactagttagatgcatgaatgacatcataaaactactttgtaacgaaaggtgcagcaacatgaaccactttaccacggcacagag-----------T---------------ACAA-TA---A-TCA----TT-A-T--A----AT-------ATATTTT-----CATG------CA----T-------TGT---ACCGATCTCACT-----------------CCAGG--CAG---A---T---GTTGAG----G-----T--------------------TCGTTTTT-------C--CATCATACTCGCTG-CAAAATCA-AAA----ATGCTGCACGTTACACGATATGA----AT---------CC--CCCCACTCCCCCGCACCCATCCACCTCA-------T--CCATTGTTCCAA-------CATATATGGTTGCGATCCTCATTT-AATTAAAT---ACTAGTAGTTTAATATC-CC-CGACATCTTAAACGTAATAACCAAATTACAACAAATTGCAGAA-AGCATACCTTGATGTCACAGTTTAGGGTA----ATAAGCGA-GGCAAA
gi|14 : cagacagatgttgcactgagcctagatacgaacaagacAATTATAAACCCCATCT-TATGAATAATATATTT------ACTGAATA-GTTTTAACTAGTAAT------TACAC--TAC---------------AGCATGAAATACT---------------ACAAACA---A-A-A----T--A-T--ACCATAATTATTGTAATA--------CATTATTATTCA----T-------TGC---ACAGATCTTACTATGCAGAAAAAGTTGTTCAAGG--CAG---ATGTT---G---AGTGTCG-----T--------------------T------TTTTTTTAC--CGTCATAATTGTTG-TCAGATCATAA-----ATGCTGCATGTTACATGATTCAGCTTGAT---------CCCTGTCC--------------AT---------------T--C-ATTGTTCAAA-------CATA
gi|15 : GACTTCCCACAGAGAT--TT--GAAGGATTCATACA---T--------attacctgtgtcttgtttcaacta
gi|16 : ctcccactgcccaaactcctacgcataaggtaataaaagacggaccacagaggttttcattcatgaaaataaaggtcatatacccagtacttttcgatgagaaaaagttcactagtcagatgcatgaatatgactgcgtaaaacttcagtaattttgtacagaatggaactcaaactcacaacatcaggctgtagcagggaccactaggccacggcacacagAC------TACTCG-TAT---------------A-----------T---------------ACGT-TA---A-TCA----T--T-T--A----TA-------ATATTTT-----CATG-------A----TG------TGC---ACCGATCACGCCATTCGGAAGAATTCGTTCCAGA--CAG---A---T---G---gcatacatttg
gi|17 : agtaacaattattctgtactgcagatggacggtataaattgaccagtaacaacaataccgtactgtgcagagacacatatatagA------TA-ATTT-CTGTTTCCAGTTCTTTAACATGTTCAGATAACACGTTT--------------------GATACACA-CA----GAAATGACATAAGTGCAC-----TCACAACACTGATCAACTA-T--C------TACTTGTCAATCTCAACCTAA-GTT-------GATA--AGA-A-----AA---TACA--C----ATT-AAGTA-AAACA-AATATGCGAAACACAT-TTT---ttgcactgagcctagatacgaacaagactacaataatcattataatatattttcatgcattgtaccgatctcactccagg
gi|18 : atggacattcacataaatagcggctagtgatttttttctgtttaatggtatcaaagaaCAGTG-CGCCGACATCGACGTTACATTTAAGGGAA----ATAAGCCA-GGTAAAC-ATTT-----------------CT-TTAA-GATT-----GCAAATAGATTATTAGT-------TCTTCGAACA-GGAATAAAACTTCGGATTAGCATTTTTAAGAAATGTTTTAT-TG-GTATCTTT---TAATTTT-TTGAGCCG-AAT-AAACTATTCATTTTTATTGCTTATGGCCTT-----TAAGCAAAT---TATAAAagcaa
gi|19 : ttACAAA---CAGCGTCG--TA-ATTGATGTCACAGTCAAGGAAG----ATAAGCGA-GACTAAC-ATTT------G--GCCAGGTG---TTAC-ACTTTACCGACAA-----TAATAAGT-------ACTTCTGACA-GGAACAAACCATCGGATTGGCATATTTCGGCAATGTTTTGA-TA-ATA-TATT---TCGATTT-t
gi|2 : ccgagatctaaattatGACTTTCCACAGAGAT--TT--GAAAGATTCATACA---TGCAATCATT---TGTG------AATTATGTC---CTGTTCTTATAATAATA------TATATTTTCTA----AATTTATTTAACA-------------CC--------------------TTTGATACAAA-CG----GGACTGACATAATTGCACGTTTATCACAATACGGGTGAACTA-TAACTATATATATTGGCCAATCCCAACTAAC-GTT-------AGTA---------------------------AATA-AAGCA-GGACCAATGATGCG--AT---TGTTT---TCTTTATTATTTTATTCATTTCATTCA-TTTGCCATTCCATTCTAAACTCATT-ATGTGAT-GAAGTGTATTACACAGCCAAAAAAAATCACA-TT-TCG-GACTACCACTCGT----CCTATTTGATGCCAGTGACTATgtttccattaataatgacct
gi|2 : gcacggggT------ATTTGATG--------CCAGTGAC------TATTC--TGC---------------A-----------C----------------CG---------T-G----C--A-G--A----GACGC----AAAA--------CATA------TG----TGTTTGTATGC---ACCGAT--------------GAATTCGTTCCAG----AA---G---T---G---TC----G-----T--------------------T------T-------AAGCATTATAATAACTGACAA-ATCGTAAA-T----GCTACGC-TGAAACGA---------AC---------CA--GTTTG-------------ACTCTTTC-A-------TTCC-ATGGTTCCTA-------TATATAAGATTGCAACCCTCATTTAAATTAAAT---A--------------------------TTTGATCATAATAACCT--TTTAAACCATTTGCAGTG-TGCCGACATTGACAT-------------G----ATATGCGT-GATAACC-TTT---------CGCCAGGTGCT---AA-GTTTTACCTGTAA-----TTACCAGT-------TCTTTGAACA-GTAATtctgcaccgtgcagagacgcaaaacatatgtgtttgtatgcaccgatgaattcgttccagaagtgtcgtttaagcattataataactgacaaatcgtaaatgctacgctgaaacgaaccagtttgactctttcattccatggttcctatatataagattgcaaccctcatttaaattaaatatttgatcataataaccttttaaaccatttgcagtgtgccgacattgacatgatatgcgtgataacctttcgccaggtgctaagttttacctgtaattaccagttctttgaacagtaattattttagggctgaattaactatttattttcatttcttatgaccttta
gi|2 : gcacgggggactttccacagagatttgaaagattcatacatgcaatcatttgtgaattatgtcctgttcttataataatatatattttctaaatttatttaacacctttgatacaaacgggactgacataattgcacgtttatcacaatacgggtgaactataactatatatattggccaatcccaactaacgttagtaaataaagcaggaccaatgatgcgattgttttctttattattttattcatttcattcatttgccattccattctaaactcattatgtgatgaagtgtattacacagccaaaaaaaatcacatttcggactaccactcgtccTTTGAA-CA-GTAATT--------ATTT-TAGGGCTG-AAT-TAACTATTTATTTTCATTTCTTATGACCTTTAtattttagggctgaattaactatttattttcatttcttatgaccttta
gi|20 : gcacgggggactttccacagagatttgaaagattcatacatgcaatcatttgtgaattatgtcctgttcttataataatatatattttctaaatttatttaacacctttgatacaaacgggactgacataattgcacgtttatcacaatacgggtgaactataactatatatattggccaatcccaactaacgttagtaaataaagcaggaccaatgatgcgattgttttctttattattttattcatttcattcatttgccattccattctaaactcattatgtgatgaagtgtattacacagccaaaaaaaatcacatttcggactaccactcgtcctatttgatgccagtgactattctgcaccgtgcagagacgcaaaacatatgtgtttgtatgcaccgatgaattcgttccagaagtgtcgtttaagcattataataactgacaaatcgtaaatgctacgctgaaacgaaccagtttgactctttcattccatggttcctatatataagattgcaaccctcatttaaattaaatatttgatcataataaccttttaaaccatttgcagtgtgccgacattgacatgatatgcgtgataacctttcgccaggtgctaagttttacctgtaattaccagttcTCCCACAGAGAT--TT--AAACTATTCGTACACGCT--------TACATTTT------AATCATTCT---ATATTCTTATTATCTTA------TACATTT-ATA----CATTTCTTTAACATGCTCAG----------------------AT---CTTTAATGCGTACCT-TT-GAACTGACAT-ATTG
gi|20 : TTTAA-TGCGTACCTTTGAACTGACATATTGATG---AAT-ACACTTTTTATTTCCATTGCT-ATGACCTTTAAAGTAAatgaatacactttttatttccattgctatgacctttaaagtaaatacagtggacaaatatttc
gi|21 : tcccacagagatttaaactattcgtacacgcttacattttaatcattctatattcttattatcttatacatttatacatttctttaacatgctcagatcGACTTCCT-CAGAGAT--TT--GGACGATTCATACA---T--------atacagtggacaaatatttc
gi|21 : acagagA------TACATGC-ATA----CATTTCTTTAACATGCTCAGAGAACACC--T-----------AC-------GAACCACA-CGTTT-GGACTGATATAA-TGTACACTTATCACGATGCTG-------A-T--C------TACTGGCCAATGACGTCCTACAAAT-------AATA--A-A-A-----AAAGTTAAA--TACAAATG-AAATATAAATAAAGAgcatacatttctttaacatgctcagagaacacctacgaaccacacgtttggactgatataatgtacacttatcacgatgctgatctactggccaatgacgtcctacaaataataaaaaaagttaaatacaaatgaaatataaataaagat
gi|22 : acagaggacttcctcagagatttggacgattcGACTTTCCACGGGGAT--TC--GAAGGATTCATACA---T--------t
gi|23 : gagaagaaactctaagtcagatacatgaacatgaccaagtataactgccattaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTGACGTCA-AATTAAGGGAGGGATATAATTGA-GACGAAC-TTCT--------CGCCGGG-G-T-TTAC-AATTTACCTGCAA-----ATA--GGA-------AGTTAG-ACA-GGAATAACCCGTCGGAATAGCATTTGTCAGCAATGTTTAAA-TG-GTA-TATT---TTGATTC-ATAGGACT---T-AAAC-ATTTATgcagacatctttaa
gi|24 : -TTGCGATTACGACACGT----CAGGTTT-----CAGTTATTATAACCCACAACT-GATGATAAA--TATTT------GATTGATA-GTTTTAACCAACATC------CACACAGTAC---------------AT----------T---------------GCGG-TG---A-C-A----CGGA-C--A----AA-------A
gi|25 : GATTTCCCACAGAGAT--TT--GAAAGATTCATACA---T--------tatacgataagcatactatatttcca
gi|26 : catagagGGAA----ACAAGCGA-TGCATAC-TTTT--TTAAGACGTTAAA-ACT-CTAAAGTTTTACCTGCAT-----TTACTAATACTTCGAACTTCGAACA-GGAATAAACCTTgcatacacagcctttgattttttgctctgattaaatacatgtaatagttattcttgtgattttattt
gi|27 : gat-GTTTTAATTGCAA-----TTGCTAGT-------ACTTCGGACATGAAACAGTCCGTCGGATAAGCATCTTTTGGCAATGTTTTAA-TG-TTCTCTTT---T
gi|28 : AA-----TGACTAGT-------GCTTCGAACA-GGAATTAATCTTCGGAGTAGCATA---CGACACTG--TTAATTG-GTA-TTTG---TTGATTT-Tagg
gi|29 : acaTTTCAGCAATGTTTTAA-TG-GTA-TATT---TTGATTT-TTAAGGCTGAAT-GAACAATTCATTTTCATTGCTTA
gi|3 : cttGATTTCCCATAGAGAT--TT--GGAGGAGTCATATA---T-------------GC-------AATCGTGTCCCTATATTCTTA---TCTTA------TATATTT-CTA----CATTTCTTTAACATGCTCAGAGAACA----T-----------A-----TTTGACAC-CA-AA-AT-GA-CTAATATAATTTCACAATTATAACAATACTGATAAACTA-T--A------TACTGGTCTATCAAAACCTTC-GTT-------AATAAAA-A-A-----AA---TAAA--CACAAATA-AAGGA-AAATA-ATCATGCGACA----T-TTT---TC-------ATGTATTCATTTCACTC--TAT-T--TTTTATTCCAAATTCATT-ATATGATCCAAATATGTTACACAA-----GAACTTCATA-ATATAG-GATTACGACGCGT----CATGATT-----CAGTAATTGTAACCCCGTACT-GATGAACACTATGTTT------ATTTGTTAT-TTTT-ACCAGTAAG------CACGC--TGC---------------A-----------TCATGCAGAGACACTAACGA--A---A-T-ATATTT--A-T--A----AT-------ATAATATTTTTTCATG------CA----T-------TGC---ACCGATCTCGCTATTCAAAAGAATTCGTTCCAGG--C---------T---G---AA----C-----A--------------------T------A-------C--TATTGCGATATCTG-CCAGAGCATA----G-ATGCTATACGATACACGA---------ATCAGTGTGACCC--TTCTC-------------AT-------T-------C--C-ATGGTTCCGT-------CATTTAAGGTTGCAACTCCCATTTCTATTAAAT---A------GTTTCATTTA-CCTTGATATTTTAATTGTAATAACCT--TAACAACAAAT
gi|30 : agTGCAA-----TTACTCGT-------GTTTTGAATA-GGAATAAACCTTCGGATTAGCACATTTgactagt
gi|4 : tcttttagagtgtaaaacttACGACTTCCTACAGAGAT--TT--GAACGATTCATATA---T--------G---CATACAGCTAAATCATGCC---ATATTCTTAATATCATA------TGCATTT-CTA----CATTTCTTTAACATGCTCAGAGAA------T-----------AC---CTTTGATAGACACCC-TT-GAACTGACATAACTACACGCTTATTACAATACTGATACAATA-A--A------AAATGGCCAACCACGACATAC-ATC-------ATTA--A-A-G-----AA---TAAA--TACAAATA-CAGTA-AAACA-AAGATGCAAAAC---T-TTT---CA-------TTTAA-TCATTTTGCCCTTTTT-T--TTTCATTCCAAA---AATCATATGATCAAAATGTATTACACAG-----TATATTCAGATCT-TTG-GA-----ATACGT----CAGGTTT-----GAGTGATTATAA-ACCCTGCT-GATGAACACTTTATTTCAAATCATTTGATATGTTTTAAACCGTAACTAAATGTACGC--TGCATCGTGCAGAGACATA-----------T---------------ACGA-TA---ATT-A----T--A-T------------------AA--------TAT-------------T-------TGT--------TCTCGCTATTCAGAAGAATTCGTTCCAGG--CAG---A---T---G---GG----
gi|5 : gTCCCACAACCAT--TT--GAACGATTCATACA---TACATAGA-T---T-TG------AATCATGCC---ATATTCTTAGCATT---------TGCATTT-CTC----AATTTCTTAAACATACTCAGAGAACACCTTT--------------------GGTACACA-CC-TTTGAACTGACGTAACTACACGCTTATTACAATACTGATGCACTA-T--C------TACTAGTCATTCACGACCTAC-AGT-------AATA--C-A----------------------AATA-AGATA-AAACA-AAAATGCAAAAC-----TTT---TC-------TTGCAACCATTTCGCTC--TTT-C--TTTCATACCAAACTCATT-ATATGATAAAAATATATTAAACAG-----TAAATTAACATCT-TTT-GATCACGACACGT----CAGGTTT-----CAGTAAATATAACCCCGTACTGGAGAAACTATTTATTT------ATTTGATATGTTTTAACCAGTAAC------TTCAC--TGC---------------A-----------A---------------ACGA-TA---A-T-A----T--A-T--T----AGGCTAT--ATAATATGTTT-CATG------CA----T-------TGC---GCAGATCTCGGTATTTAAAAGAATTTGTTCCCTG--CAG---A---T---G---AG----A-----T--------------------T------T-------C--CACCATtata
gi|6 : T-TTG-GATTACGACACGT----CAGGTTT-----CATTAATCATAACCTGCTACT-GTTGAACAAATCATGT------ACGTGTTATGATTTA-CCAGTAAC------TTCAC--TTCCCCGTGAAGAG----A-----------C---------------ACGA-AAGAAA-T-A----T--ACT--A----TA-------ATCA--------TATT------CAATAAT-------TTCTTTACCGATCTCGCTATTCAGAAAATCTCGTTCCGTG--CAT---A---TATTG---AGTGTCG-----T--------------------T------TTT-----C--CATAATAATTACTGACAA-ATAATAAA-TTTATGCTACACGTTAAACAA---------AT---------CA--GTCTG-------------ACC------A-------T--GGATGGTTCCAA-------CATGTATGAT-GCAACCCCTATTTAAATTAAAT---A------GTTTA--------------TTTTAATCGTAATGACCT--TTACACCAAATTGCAGCG-CGTCGGCATTGACGTCACATTTAAGAGAG----ATTAGCAATGTCAAAT-TTT
gi|6 : tcattTTCGAACA-GTAATAAACCTTCGGATTAGCATATTTCGGAAATA---TAA-T------------------------AAACT--AT----CTAT----TTTCATTGTTTATGACCTcgaacagtaataaaccttcggattagcatatttcggaaatataataaactatctattttcattgtttatgacct
gi|7 : tcatttttggattacgacacgtcaggtttcattaatcataacctgctactgttgaacaaatcatgtacgtgttatgatttaccagtaacttcacttccccgtgaagagacacgaaagaaatatactataatcatattcaataatttctttaccgatctcgctattcagaaaatctcgttccgtgcatatattgagtgtcgtttttccataataattactgacaaataataaatttatgctacacgttaaacaaatcagtctgaccatggatggttccaacatgtatgatgcaacccctatttaaattaaatagtttattttaatcgtaatgacctttacaccaaattgcagcgcgtcggcattgacgtcacatttaagagagattagcaatgtcaaatt---------------A-----------T---------------AGGA-TA---A-TCA----T--A-C--A----TG-------ATAG--------TATTT-----CA----T-------TTC---ACCTATATCTCTATTAAGAAGAGCGTATTCCGGGTTCAATATA---T---G---GA----G-----TGTCATTATCGAATGTCCTTTT------T-------C--GATCATAATCGCTG-CCAGATCACAAA-TTCATGCTGCGAGTTAAAGGA---------AT---------CA--GTCTG-------------AT-------AGTTTTTTTA-C-ATGGTTCCAAAAGGGTGCA-ATGTGGTTGTAACCATCATTGTAATTAAATTATG------GTTTAATTTATCC-CGATATCT--------------------CAACAAAGTCCAGCA-CGCCCACATTTAGGTCACATTTAAGAAAG----ATAAGCGA-GGTAAACATTTT--TTTAA--GATAG-------TAA------AACTGAAA-----GTACTAGT-------TCTTCGAACA-GGAATAAACTTTCGGTTTAGCATATTTAGAAAATTATTTAA-TG-ATATTTTT---TT-AC-------GGCT-GATAAAACTATTTATTTTCATTGCTCATGAC
gi|8 : aaataattTTCCCACGGAGAT--TT---AATGA---ATATG---T--------T---TGTG------CATCATGTC---CTATTATTTATATCATAAAATTATATATTT-CTA----CATTTCCTTAACATGCTCAGAGAACA----T-----------A-----TTTGATACACA-TA-T---AACTGACATA--------TTTATTAAAATGCTGTGAAATTG-T--C------TACCGATCAATCACAACCTAC-GTTTAAAAAGAACA--A-A-A-----AA---TAAAACC---AATG-AAATA-TAAC-CAAGATGCGAAAC---A-TTT---t
gi|9 : aaattggaatgaaggccaatgtaatgcataacaggtcatatttgacaacctgtacttttggtgtaaaacaactcactagtcatatgcatgagcaactgcgtagaactacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATGCTCATATAACAC---------------------TTTGATACACA-CA-A--AAACTGACATAATTGCACGCTTTATACAATAC-AATAACCTA------------------CAACAATGA-------------------A--A-ATA-----AA---TAAA------AATA-AAGTA-AATCA--AGATAAGAAAC---T-TTTAACTC-------TTTCATCTTTTTTATTC--TTT-C--TTTCTTTCCGA-CTCAG-CATACAATCGAAATAAATTACATGG-----GGAATTCATAGTT-TTG-GATTACGCCACGTGCGCCAATTCT-----CAGTAATCATGACCCACTACT-GATGAA-----TACA--------------AGGTTT--ACC--TGCT------AATGT--TGC---------------C-----------T---------------A-GG-TA---A-TAA----T--A-T------------------TA--------CAT-------------T-------TGA---ATCGATCTCGCTACTCAGAAGAATTCGTTTCCGG--CAG---ATGTT---G---AG----GGTTGTT--------------------T------T-------C--C----------------AGATCATAA-----ATGCTGCATGTTACACGA---------AT---------Ccaaaccaatc
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111
lowQualScore : 66666666666666666666666 44444444444444444444444 22222 11111111111 11111111111111111111111 3333333 11111 2222222 11 1111 1 111111 22 1111 11111 11 111111 11 111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111 1111111 7777777777777777777777777777777777777777777777 1 3333 11111111111111111111111111111111111111111111111111111111111111 1111111 3333333333333333333333333 8888888888888888888888 11111 11111111 1 1 33333 222
lowQualScore : 0 33 77 1 555 11111111111111111111111 7777 5 6 999999 2 3 7777 55555555555555555555555 3 99999 1 1 3 2 4 2 11111111111 33333333 0 3 99999999999999999999999 555 7777777 3 3 4 4 44444 888 1111111 3 55 1111 1 5 44 0 777777 1 77 5 5 0000 22222 0 5 66 00 222222 33 33 111111 3 99 777 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 3 00000000 3 88888 555 55 3333333 666 666 2222222222222222222222222222222222222222222222 66 33 0 3 4 6666 1 88888888888888888888888888888888888888888888888888888888888888 8888888 7 6666666666666666666666666 1 99 1 0 5 1 1 1 2 9999 4 66 1111111111111111111111 777 0 1 00000 44444444 3 4 4 6666 2 4 777 0 4 0 0 5 0 1 44444 000
lowQualScore : . .. .. . ... ....................... .... . . ...... . . .... ....................... . ..... . . . . . . ........... ........ . . ....................... ... ....... . . . . ..... ... ....... . .. .... . . .. . ...... . .. . . .... ..... . . .. .. ...... .. .. ...... . .. ... ............................................................................................ . ........ . ..... ... .. ....... ... ... .............................................. .. .. . . . .... . .............................................................. ....... . ......................... . .. . . . . . . . .... . .. ...................... ... . . ..... ........ . . . .... . . ... . . . . . . . ..... ...
lowQualScore : 3 99 99 0 000 11111111111111111111111 6666 2 4 666666 2 3 1111 99999999999999999999999 1 22222 9 2 3 9 2 3 00000000000 22222222 4 3 55555555555555555555555 888 8888888 3 6 4 4 11111 888 7777777 7 88 2222 0 0 77 7 777777 0 88 0 0 6666 55555 1 0 99 00 888888 99 66 555555 0 55 000 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 3 99999999 3 33333 888 00 6666666 444 444 7777777777777777777777777777777777777777777777 11 66 0 0 5 1111 0 77777777777777777777777777777777777777777777777777777777777777 6666666 5 0000000000000000000000000 5 22 4 4 7 7 0 4 8 4444 4 99 0000000000000000000000 666 1 4 00000 00000000 6 8 0 8888 1 0 000 1 0 4 0 0 4 4 33333 555
consensus : NACGACTTCCCACGGAGAT--TT--GAANGATTCATACA---T--------T---TGTG------AATCATGTC---ATATTCTTAATATCGTA------TACATTT-CTA----CATTTCTTTAACATGCTCAGAGAACA-C------------TA-------TTTGATACACA-CA-TTGAACTGACATAATTGCACGCTT-ATCACAATACTGNTAAACTA-T--C------TACTGGTCAATCACGACCTAC-GTT-------AATA--A-A-A-----AA---TAAA--T---AATA-AAGTA-AAACA-AA-GATGCGAAAC---T-TTT---TC-------TTTCATCCATTTCGCTC--TTT-C--TTTCATTCCAAACTCATTCATATGATCGAAATGTATTACACGG-----NAAATTCANA-CT-TTG-GATTACGACACGT----CAGGTTT-----CAGTAATTATAACCCCCTACT-GATGA--ACAATTTATTT------ATTTGATATGTTTTAACCAGTAAC------TACGC--T---GC---------------A-T---------------ACG-ATA---AT-A----T--A---T--AA-------A-----ATA----AT-T-----C-ATG-CA----T-T-----GC---ACCGATCTCGCTATTCAGAAGAATTCGTTCCAGG--CAG---A---T---G---AG----G-----T--------------------T------T-------C--CATCATAATCGCTG-CAAGATCATAAATT-ATGCTGCACGTTANACGA---------ATCA--GTCCG-------------A-------C-------A-------T--C-ATGGTTCCAA-------CATATATGGTTGCAACCCTCATTTNAATTAAAT---A------GTTTAATTTA-CC-CGATATCTTAATCGTAATAACCT--TTACAACAAATTGCAGCG-CGCCNACATTGACGTCACANTTAAGGGAG----ATAAGCGA-GGCAAAC--TTT---TTTAG--CGCCAGG-GCT-TTAA-GTTTTACCTGCAA-----TTACTAGT-------NCTTCGAACA-GGAATAAACCTTCGGATTAGCATATTTCGGCAATGTTTTAA-TG-G--TATTT-TT---TTGATTT-TTGAGGCT-AAT-AAACTATTTATTTTCATTGCTTATGACCTTTA---TAAGCAAATCGATATGAA
Reference ( family-4477 ) : NACGACTTCCCACGGAGAT--TT--GAANGATTCATACA---T--------T---TGTG------AATCATGTC---ATATTCTTAATATCGTA------TACATTT-CTA----CATTTCTTTAACATGCTCAGAGAACA-C------------TA-------TTTGATACACA-CA-TTGAACTGACATAATTGCACGCTT-ATCACAATACTGNTAAACTA-T--C------TACTGGTCAATCACGACCTAC-GTT-------AATA--A-A-A-----AA---TAAA--T---AATA-AAGTA-AAACA-AA-GATGCGAAAC---T-TTT---TC-------TTTCATCCATTTCGCTC--TTT-C--TTTCATTCCAAACTCATTCATATGATCGAAATGTATTACACGG-----NAAATTCANA-CT-TTG-GATTACGACACGT----CAGGTTT-----CAGTAATTATAACCCCCTACT-GATGA--ACAATTTATTT------ATTTGATATGTTTTAACCAGTAAC------TACGC--T---GC---------------A-T---------------ACG-ATA---AT-A----T--A---T--AA-------A-----ATA----A--------C-ATG-CA----T-T-----GC---ACCGATCTCGCTATTCAGAAGAATTCGTTCCAGG--CAG---A---T---G---AG----G-----T--------------------T------T-------C--CATCATAATCGCTG-CAAGATCATAAAT--ATGCTGCACGTTANACGA---------ATCC--GTCCG-------------A-------T-------A-------T--C-ATGGTTCCAA-------CATATATGGTTGCAACCCTCATTTNAATTAAAT---A------GTTTAATTTA-CC-CGATATCTTAATCGTAATAACCT--TTACAACAAATTGCAGCG-CGCCNACATTGACGTCACANTTAAGGGAG----ATAAGCGA-GGCAAAC--TTT---TTTAG--CGCCAGG-GCT-TTAA-GTTTTACCTGCAA-----TTACTAGT-------NCTTCGAACA-GGAATAAACCTTCGGATTAGCATATTTCGGCAATGTTTTAA-TG-G--TATTT-TT---TTGATTT-TTGAGGCT-AAT-AAACTATTTATTTTCATTGCTTATGACCTTTA--GTAAGCAAATCGATATGAA
gi|1 : ATGACATTCCACAGAGAT--TT--GAACGGTTCATATA---T--------T---TG--------AACCATGTC---ATATTCGTATTATCAAA------TGCATT--CTT----TATTTCTTCAACATATTCAGAGAACA-CCTTTTACACCCTTAAACTTCCTTTGATATACA-CCCTTAAACTGGCATAACTACACGCTT-TTCACAATACTGATACACTA-T--C------TACTGGTCAATCACGACCTAC-ATT-------AATA--A-A-AT----AA---TAAA--TT--GATA-AGGTA-AAAAAGAA-AATGCGAAAC---T-TTT---TC-------TTTCAACCATTTCGCTC--TTT-C--TTTCATTCCAAACTCATTCGTATGATCACAATGTATTACACGG-----TAAATTCAGA-----TG-GATTACGACACGT----CAGGTTT-----CAGTTATTATAGCCCCCTACT-GATTA--ACAATTTATAT------ATTTGATATGTTTAAACCAGTAAC------GACAC--T---GC---------------A-T---------------ACG-ATA---AT-A----T--A---TAAAA-------A-----AAA----A--------C-ATG-CA----T-T-----GC---ACTGATCTCGCTATTTAGAAGAATTCGATCCAGG--CAT---A---T---G---AG----A-----T--------------------T------T-------C--CACCATGATCGCTG-CAAGATCATGAATTAATGCCACACGTTAAACAA---------ATCC--CTCCA-------------A-------T-------A-------T--C-ATGGTTCCAT-------CATACATGGTTGCAACCCTCGTTTCAGTTAGAT---A------GTTTAATTTA-CCGAGATATCTTAATCGTAATAACCT--TTACAACAAGTTGCAGTG-TGTCTACATTGACGTCATAGGTGAGGGAG----ATAAGCGA-TGTAAAC--TTTTAATTTAGA-CGTTAGA-GCTCTTAA-GTTTTATCTGCAT-----TTACTAGT-------ACTTCAAGCA-GGAATACACCTTC----TAGCATATTTTGGCAATGTTTTAA-TA-G--TATTT-TT---TTGATTT-TAGAGATT-AAT-AAACTATTTATTTTCATTGCGTATGAACTTTACCATAAACAAATCGATATGAA
gi|10 : tTTCCCACGGATATGTTT--AAAGGATTCACACA---TGCATATATT---TGTG------CATCATGTC---ATATTCTTTATATCGTA------TATATTT-CTA----TATTTCTTTAACATGCTTAGAGAACA-C-------------A-------TTTCATACACA-CA-T--AACTGACATAATTACACGCTT-ACTACAATGATGTTAAA-TACT--C------TACTGCT----------CTAC-GTTGGAA---AATA--G-T-A-----AA---TAAA--TACAAATA-AA
gi|11 : aaatgggaataaaggtcaatgcaatgcataacatgtcatagttgacaacctgtacttggtgcaaaaatctcactagttagatgcatgaacgactgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGACTTCC---GGATAT--TTTTAAAGGATTCACACA---TGCATATATT---TGTG------CATCATGTC---CTACTCTTGATATCGTA------TATATTT-CTA----TATTTCTTTAATATGCTTAGAGAACA-C-------------A-------TTTGATGCACA-CA-T--AACTGACATAATTACACGCTT-ACCACAATGATGTTAAATAA-T--C------TACTGCT----------CTAC-GTT-------GA-A--A-A-ATAGTGAA---TAAA--T----ACA-AATTA-Ac
gi|12 : taaatgggaataaaggtcaatgcaatgcataacatgtcatagttgacaacctgtacttggtgcaaaaatcatctcactagttagatgcatgaacgactgtataaaactactttgtaatgaaagaaacttacccacacaacatcagtagtgagagataagtgacctcggtgcagcaacatgaaccactttaccacggcacagagGACTTCCCACGGATAT--TTTTAAAGGATTCACACA---TGCATATATT---TGTG------CAACATATC---CTATTCTTAATATCGTA------TATATTT-CTA----TATTTCTTTAACATGCTTAGAGAACA-C-------------A-------TTTGATACACA-CA-T--AACTGACATAATTACACGCTT-ACTACAATGATGTTAAATAA-T--C------TACTGCT----------CTAC-GTT-------GAAA--A-A-T-----AG---TAAA--TG--AATACAAATA-AA
gi|13 : taaatgggaataaaggtcaatgcaatgcataacatgtcatagttgacaacctgtacttggtgcaaaaatctcactagttagatgcatgaatgacatcataaaactactttgtaacgaaaggtgcagcaacatgaaccactttaccacggcacagag-T---------------ACA-ATA---ATCA----TT-A---T--AA-------T-----ATA----TTTT-----C-ATG-CA----T-T-----GT---ACCGATCTCACT-----------------CCAGG--CAG---A---T---GTTGAG----G-----T--------------------TCGTTTTT-------C--CATCATACTCGCTG-CAAAATCA-AAA---ATGCTGCACGTTACACGATATGA----ATCC--CCCCACTCCCCCGCACCCA-------TCCACCTCA-------T--CCATTGTTCCAA-------CATATATGGTTGCGATCCTCATTT-AATTAAAT---ACTAGTAGTTTAATATC-CC-CGACATCTTAAACGTAATAACCAAATTACAACAAATTGCAGAA-AGCATACCTTGATGTCACAGTTTAGGGTA----ATAAGCGA-GGCAAA
gi|14 : cagacagatgttgcactgagcctagatacgaacaagacAATTATAAACCCCATCT-TATGA--ATAATATATTT------ACTGAATA-GTTTTAACTAGTAAT------TACAC--TACAGC---------------A-TGAAATACTACAA---ACA-A-A---AT-A----T--ACCAT--AATTATTGTA-----ATACATTA--------TTATT-CA----T-T-----GC---ACAGATCTTACTATGCAGAAAAAGTTGTTCAAGG--CAG---ATGTT---G---AGTGTCG-----T--------------------T------TTTTTTTAC--CGTCATAATTGTTG-TCAGATCATAA----ATGCTGCATGTTACATGATTCAGCTTGATCCCTGTCC--------------A-------T---------------T--C-ATTGTTCAAA-------CATA
gi|15 : GACTTCCCACAGAGAT--TT--GAAGGATTCATACA---T--------attacctgtgtcttgtttcaacta
gi|16 : ctcccactgcccaaactcctacgcataaggtaataaaagacggaccacagaggttttcattcatgaaaataaaggtcatatacccagtacttttcgatgagaaaaagttcactagtcagatgcatgaatatgactgcgtaaaacttcagtaattttgtacagaatggaactcaaactcacaacatcaggctgtagcagggaccactaggccacggcacacagAC------TACTCG-T---AT---------------A-T---------------ACG-TTA---ATCA----T--T---T--AT-------A-----ATA----TTTT-----C-ATG--A----TGT-----GC---ACCGATCACGCCATTCGGAAGAATTCGTTCCAGA--CAG---A---T---G---gcatacatttg
gi|16 : agtaacaattattctgtactgcagatggacggtataaattgaccagtaacaacaataccgtactgtgcagagacacatatatag-T---------------ACA-ATA---ATCA----TT-A---T--AA-------T-----ATA----TTTT-----C-ATG-CA----T-T-----GT---ACCGATCTCACTttgcactgagcctagatacgaacaagactacaataatcattataatatattttcatgcattgtaccgatctcactccagg
gi|17 : agtaacaattattctgtactgcagatggacggtataaattgaccagtaacaacaataccgtactgtgcagagacacatatatagactactcgtatatacgttaatcatttataatattttcatgatgtgcaccgatcacgccattcggaagaattcgttccagacagatgttgcactgagcctagatacgaacaagacA------TA-ATTT-CTGTTTCCAGTTCTTTAACATGTTCAGATAACA-C-------------G-------TTTGATACACA-CA---GAAATGACATAAGTGCAC------TCACAACACTGATCAACTA-T--C------TACTTGTCAATCTCAACCTAA-GTT-------GATA--AGA-A-----AA---TACA--C----ATT-AAGTA-AAACA-AA-TATGCGAAACACAT-TTT---ccagg
gi|18 : atggacattcacataaatagcggctagtgatttttttctgtttaatggtatcaaagaaCAGTG-CGCCGACATCGACGTTACATTTAAGGGAA----ATAAGCCA-GGTAAAC--ATT---T---------------CT-TTAA-GATT-----GCAAATAGATTATTAGT-------TCTTCGAACA-GGAATAAAACTTCGGATTAGCATTTTTAAGAAATGTTTTAT-TG-G--TATCT-TT---TAATTTT-TTGAGCCG-AAT-AAACTATTCATTTTTATTGCTTATGGCCTT-----TAAGCAAAT---TATAAAagcaa
gi|19 : ttACAAA---CAGCGTCG--TA-ATTGATGTCACAGTCAAGGAAG----ATAAGCGA-GACTAAC--ATT---T---G---GCCAGGTG---TTAC-ACTTTACCGACAA-----TAATAAGT-------ACTTCTGACA-GGAACAAACCATCGGATTGGCATATTTCGGCAATGTTTTGA-TA-A--TA-TA-TT---TCGATTT-t
gi|2 : ccgagatctaaattatGACTTTCCACAGAGAT--TT--GAAAGATTCATACA---TGCAATCATT---TGTG------AATTATGTC---CTGTTCTTATAATAATA------TATATTTTCTA----AATTTATTTAACAC-------------C------------T---------TTGATACAAA-CG---GGACTGACATAATTGCACGTTT-ATCACAATACGGGTGAACTA-TAACTATATATATTGGCCAATCCCAACTAAC-GTT-------AGTA---------------------------AATA-AAGCA-GGACC-AATGATGCG--AT---TGTTT---TCTTTATTATTTTATTCATTTCATTCA-TTTGCCATTCCATTCTAAACTCATT-ATGTGAT-GAAGTGTATTACACAGCCAAAAAAAATCACA-TT-TCG-GACTACCACTCGT----CCTATTTGATGCCAGTGACTATgtttccattaataatgacct
gi|2 : gcacggggT------ATTTGATG--------CCAGTGAC------TATTC--T---GC---------------A-C----------------CGTGCAG--AG-A----C--G---C--AA-------A-----ACA-------------T-ATG-TG----T-TTGTATGC---ACCGAT--------------GAATTCGTTCCAG----AA---G---T---G---TC----G-----T--------------------T------T-------AAGCATTATAATAACTGACAA-ATCGTAAAT----GCTACGC-TGAAACGA---------ACCA--GTTTG-------------A-------CTCTTTC-A-------TTCC-ATGGTTCCTA-------TATATAAGATTGCAACCCTCATTTAAATTAAAT---A--------------------------TTTGATCATAATAACCT--TTTAAACCATTTGCAGTG-TGCCGACATTGACAT-------------G----ATATGCGT-GATAACC--TTT----------CGCCAGGTGC---TAA-GTTTTACCTGTAA-----TTACCAGT-------TCTTTGAACA-GTAATtctgcaccgtgcagagacgcaaaacatatgtgtttgtatgcaccgatgaattcgttccagaagtgtcgtttaagcattataataactgacaaatcgtaaatgctacgctgaaacgaaccagtttgactctttcattccatggttcctatatataagattgcaaccctcatttaaattaaatatttgatcataataaccttttaaaccatttgcagtgtgccgacattgacatgatatgcgtgataacctttcgccaggtgctaagttttacctgtaattaccagttctttgaacagtaattattttagggctgaattaactatttattttcatttcttatgaccttta
gi|2 : gcacgggggactttccacagagatttgaaagattcatacatgcaatcatttgtgaattatgtcctgttcttataataatatatattttctaaatttatttaacacctttgatacaaacgggactgacataattgcacgtttatcacaatacgggtgaactataactatatatattggccaatcccaactaacgttagtaaataaagcaggaccaatgatgcgattgttttctttattattttattcatttcattcatttgccattccattctaaactcattatgtgatgaagtgtattacacagccaaaaaaaatcacatttcggactaccactcgtccTT-TTAGGGCTGAAT-TAACTATTTATTTTCATTTCTTATGACCTTTA--tattttagggctgaattaactatttattttcatttcttatgaccttta
gi|20 : gcacgggggactttccacagagatttgaaagattcatacatgcaatcatttgtgaattatgtcctgttcttataataatatatattttctaaatttatttaacacctttgatacaaacgggactgacataattgcacgtttatcacaatacgggtgaactataactatatatattggccaatcccaactaacgttagtaaataaagcaggaccaatgatgcgattgttttctttattattttattcatttcattcatttgccattccattctaaactcattatgtgatgaagtgtattacacagccaaaaaaaatcacatttcggactaccactcgtcctatttgatgccagtgactattctgcaccgtgcagagacgcaaaacatatgtgtttgtatgcaccgatgaattcgttccagaagtgtcgtttaagcattataataactgacaaatcgtaaatgctacgctgaaacgaaccagtttgactctttcattccatggttcctatatataagattgcaaccctcatttaaattaaatatttgatcataataaccttttaaaccatttgcagtgtgccgacattgacatgatatgcgtgataacctttcgccaggtgctaagttttacctgtaattaccagttctttgaacagtaattaTCCCACAGAGAT--TT--AAACTATTCGTACACGCT--------TACATTTT------AATCATTCT---ATATTCTTATTATCTTA------TACATTT-ATA----CATTTCTTTAACATGCTCAGA-------------------TC-------TTTAATGCGTA-CCTTTGAACTGACAT-ATTG
gi|20 : TTTAA-TGCG--TACCT-TTGAACTGACATATTGATG---AAT-ACACTTTTTATTTCCATTGC-TATGACCTTTA----AAGTAAATatgaatacactttttatttccattgctatgacctttaaagtaaatacagtggacaaatatttc
gi|21 : tcccacagagatttaaactattcgtacacgcttacattttaatcattctatattcttattatcttatacatttatacatttctttaacatgctcagatcGACTTCCT-CAGAGAT--TT--GGACGATTCATACA---T--------acagtggacaaatatttc
gi|21 : acagagA------TACATGC-ATA----CATTTCTTTAACATGCTCAGAGAACACC------------TA---------CGAACCACA-CGTTTGGACTGATATAA-TGTACACTT-ATCACGATGCTG-------A-T--C------TACTGGCCAATGACGTCCTACAAAT-------AATA--A-A-A-----AAAGTTAAA--TACAAATG-AAATATAAATA-AA-GATgcatacatttctttaacatgctcagagaacacctacgaaccacacgtttggactgatataatgtacacttatcacgatgctgatctactggccaatgacgtcctacaaataataaaaaaagttaaatacaaatgaaatataaataaagat
gi|22 : acagaggacttcctcagagatttggacgattcGACTTTCCACGGGGAT--TC--GAAGGATTCATACA---T--------
gi|23 : gagaagaaactctaagtcagatacatgaacatgaccaagtataactgccattaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTGACGTCA-AATTAAGGGAGGGATATAATTGA-GACGAAC--TTC---T------CGCCGGG-G-T-TTAC-AATTTACCTGCAA-----ATA--GGA-------AGTTAGA-CA-GGAATAACCCGTCGGAATAGCATTTGTCAGCAATGTTTAAA-TG-G--TA-TA-TT---TTGATTC-ATAGGACT---T-AAAC-ATTTATgcagacatctttaa
gi|24 : -TTGCGATTACGACACGT----CAGGTTT-----CAGTTATTATAACCCACAACT-GATGA--TAAA--TATTT------GATTGATA-GTTTTAACCAACATC------CACACAGT---AC---------------ATT---------------GCG-GTG---AC-A----CGGA---C--AA-------A-----ATA----
gi|25 : GATTTCCCACAGAGAT--TT--GAAAGATTCATACA---T--------tacgataagcatactatatttcca
gi|26 : catagagGGAA----ACAAGCGA-TGCATAC--TTT---TTTAAGACGTTAAA-ACT-CTAAAGTTTTACCTGCAT-----TTACTAATACTTCGAACTTCGAACA-GGAATAAACCTTgcatacacagcctttgattttttgctctgattaaatacatgtaatagttattcttgtgattttattt
gi|27 : gat-GTTTTAATTGCAA-----TTGCTAGT-------ACTTCGGACATGAAACAGTCCGTCGGATAAGCATCTTTTGGCAATGTTTTAA-TG-T--TCTCT-TT---T
gi|28 : AA-----TGACTAGT-------GCTTCGAACA-GGAATTAATCTTCGGAGTAGCATA---CGACACTG--TTAATTG-G--TA-TT-TG---TTGATTT-Tagg
gi|29 : acaTTTCAGCAATGTTTTAA-TG-G--TA-TA-TT---TTGATTT-TTAAGGCTGAAT-GAACAATTCATTTTCATTGCTTA
gi|3 : cttGATTTCCCATAGAGAT--TT--GGAGGAGTCATATA---T-------------GC-------AATCGTGTCCCTATATTCTTA---TCTTA------TATATTT-CTA----CATTTCTTTAACATGCTCAGAGAACA--------------TA-------TTTGACAC-CA-AA-ATGA-CTAATATAATTTCACAATT-ATAACAATACTGATAAACTA-T--A------TACTGGTCTATCAAAACCTTC-GTT-------AATAAAA-A-A-----AA---TAAA--CACAAATA-AAGGA-AAATA-AT-CATGCGACA----T-TTT---TC-------ATGTATTCATTTCACTC--TAT-T--TTTTATTCCAAATTCATT-ATATGATCCAAATATGTTACACAA-----GAACTTCATA-ATATAG-GATTACGACGCGT----CATGATT-----CAGTAATTGTAACCCCGTACT-GATGA--ACACTATGTTT------ATTTGTTAT-TTTT-ACCAGTAAG------CACGC--T---GC---------------A-TCATGCAGAGACACTAACG-A-A---AT-ATATTT--A---T--AA-------T-----ATA----ATATTTTTTC-ATG-CA----T-T-----GC---ACCGATCTCGCTATTCAAAAGAATTCGTTCCAGG--C---------T---G---AA----C-----A--------------------T------A-------C--TATTGCGATATCTG-CCAGAGCATAG----ATGCTATACGATACACGA---------ATCA--GTGTG-------------ACCCTTCTC-------A-------TTCC-ATGGTTCCGT-------CATTTAAGGTTGCAACTCCCATTTCTATTAAAT---A------GTTTCATTTA-CCTTGATATTTTAATTGTAATAACCT--TAACAACAAAT
gi|30 : agTGCAA-----TTACTCGT-------GTTTTGAATA-GGAATAAACCTTCGGATTAGCACATTTgactagt
gi|4 : tcttttagagtgtaaaacttACGACTTCCTACAGAGAT--TT--GAACGATTCATATA---T--------G---CATACAGCTAAATCATGCC---ATATTCTTAATATCATA------TGCATTT-CTA----CATTTCTTTAACATGCTCAGAGAATA-C------------C--------TTTGATAGACACCC-TTGAACTGACATAACTACACGCTT-ATTACAATACTGATACAATA-A--A------AAATGGCCAACCACGACATAC-ATC-------ATTA--A-A-G-----AA---TAAA--TACAAATA-CAGTA-AAACA-AA-GATGCAAAAC---T-TTT---CA-------TTTAAT-CATTTTGCCCTTTTT-T--TTTCATTCCAAA---AATCATATGATCAAAATGTATTACACAG-----TATATTCAGATCT-TTG-GA-----ATACGT----CAGGTTT-----GAGTGATTATAA-ACCCTGCT-GATGA--ACACTTTATTTCAAATCATTTGATATGTTTTAAACCGTAACTAAATGTACGC--T---GCATCGTGCAGAGACATA-T---------------ACG-ATA---AT------T--A---T-----------------ATA----A--------T-AT--------T-T-----GT--------TCTCGCTATTCAGAAGAATTCGTTCCAGG--CAG---A---T---G---GG----
gi|5 : gTCCCACAACCAT--TT--GAACGATTCATACA---TACATAGA-T---T-TG------AATCATGCC---ATATTCTTAGCATT---------TGCATTT-CTC----AATTTCTTAAACATACTCAGAGAACA-C------------C--------TTTGGTACACA-CCTTTGAACTGACGTAACTACACGCTT-ATTACAATACTGATGCACTA-T--C------TACTAGTCATTCACGACCTAC-AGT-------AATA--C-A----------------------AATA-AGATA-AAACA-AA-AATGCAAAAC-----TTT---TC-------TTGCAACCATTTCGCTC--TTT-C--TTTCATACCAAACTCATT-ATATGATAAAAATATATTAAACAG-----TAAATTAACATCT-TTT-GATCACGACACGT----CAGGTTT-----CAGTAAATATAACCCCGTACTGGAGAA--ACTATTTATTT------ATTTGATATGTTTTAACCAGTAAC------TTCAC--T---GC---------------A-A---------------ACG-ATA---AT-A----T--A---T--TA-------GGCTATATA----ATATGTTT-C-ATG-CA----T-T-----GC---GCAGATCTCGGTATTTAAAAGAATTTGTTCCCTG--CAG---A---T---G---AG----A-----T--------------------T------T-------C--CACCATtata
gi|6 : T-TTG-GATTACGACACGT----CAGGTTT-----CATTAATCATAACCTGCTACT-GTTGA--ACAAATCATGT------ACGTGTTATGATTTA-CCAGTAAC------TTCAC--T---TCCCCGTGAAGAG----A-C---------------ACG-AAAGAAAT-A----T--AC--T--AT-------A-----ATC----A--------T-ATT-CAATAAT-T-----TCTTTACCGATCTCGCTATTCAGAAAATCTCGTTCCGTG--CAT---A---TATTG---AGTGTCG-----T--------------------T------TTT-----C--CATAATAATTACTGACAA-ATAATAAATTTATGCTACACGTTAAACAA---------ATCA--GTCTG-------------A-------CC------A-------T--GGATGGTTCCAA-------CATGTATGAT-GCAACCCCTATTTAAATTAAAT---A------GTTTA--------------TTTTAATCGTAATGACCT--TTACACCAAATTGCAGCG-CGTCGGCATTGACGTCACATTTAAGAGAG----ATTAGCAATGTCAAAT--TTT---
gi|6 : tcattTTCGAACA-GTAATAAACCTTCGGATTAGCATATTTCGGAAATA---TAA-TA-AACTATCTATT---TTCATTG-TTcgaacagtaataaaccttcggattagcatatttcggaaatataataaactatctattttcattgtttatgacct
gi|6 : tcatttttggattacgacacgtcaggtttcattaatcataacctgctactgttgaacaaatcatgtacgtgttatgatttaccagtaacttcacttccccgtgaagagacacgaaagaaatatactataatcatattcaataatttctttaccgatctcgctattcagaaaatctcgttccgtgcatatattgagtgtcgtttttccataataattactgacaaataataaatttatgctacacgttaaacaaatcagtctgaccatggatggttccaacatgtatgatgcaacccctatttaaattaaatagtttattttaatcgtaatgacctttacaccaaattgcagcgcgtcggcattgacgtcacatttaagagagattagcaatgtcaaattT-AAT-AAACTATCTATTTTCATTGTTTATGACCTtatgacct
gi|7 : tcatttttggattacgacacgtcaggtttcattaatcataacctgctactgttgaacaaatcatgtacgtgttatgatttaccagtaacttcacttccccgtgaagagacacgaaagaaatatactataatcatattcaataatttctttaccgatctcgctattcagaaaatctcgttccgtgcatatattgagtgtcgtttttccataataattactgacaaataataaatttatgctacacgttaaacaaatcagtctgaccatggatggttccaacatgtatgatgcaacccctatttaaattaaatagtttattttaatcgtaatgacctttacaccaaattgcagcgcgtcggcattgacgtcacatttaagagagattagcaatgtcaaattttcgaacagtaataaaccttcggattagcatatttcggaaata---------------A-T---------------AGG-ATA---ATCA----T--A---C--AT-------G-----ATA----G--------T-ATTTCA----T-T-----TC---ACCTATATCTCTATTAAGAAGAGCGTATTCCGGGTTCAATATA---T---G---GA----G-----TGTCATTATCGAATGTCCTTTT------T-------C--GATCATAATCGCTG-CCAGATCACAAATTCATGCTGCGAGTTAAAGGA---------ATCA--GTCTG-------------A-------T-------AGTTTTTTTA-C-ATGGTTCCAAAAGGGTGCA-ATGTGGTTGTAACCATCATTGTAATTAAATTATG------GTTTAATTTATCC-CGATATCT--------------------CAACAAAGTCCAGCA-CGCCCACATTTAGGTCACATTTAAGAAAG----ATAAGCGA-GGTAAACATTTT---TTTAA---GATAG-------TAA------AACTGAAA-----GTACTAGT-------TCTTCGAACA-GGAATAAACTTTCGGTTTAGCATATTTAGAAAATTATTTAA-TG-A--TATTT-TT---TT-AC-------GGCT-GATAAAACTATTTATTTTCATTGCTCATGAC
gi|8 : aaataattTTCCCACGGAGAT--TT---AATGA---ATATG---T--------T---TGTG------CATCATGTC---CTATTATTTATATCATAAAATTATATATTT-CTA----CATTTCCTTAACATGCTCAGAGAACA--------------TA-------TTTGATACACA-TA-T--AACTGACATA--------TTT-ATTAAAATGCTGTGAAATTG-T--C------TACCGATCAATCACAACCTAC-GTTTAAAAAGAACA--A-A-A-----AA---TAAAACC---AATG-AAATA-TAACC-AA-GATGCGAAAC---A-TTT---t
gi|9 : aaattggaatgaaggccaatgtaatgcataacaggtcatatttgacaacctgtacttttggtgtaaaacaactcactagtcatatgcatgagcaactgcgtagaactacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATGCTCATATAACA-C------------T---------TTGATACACA-CA-A-AAACTGACATAATTGCACGCTTTAT-ACAATAC-AATAACCTA------------------CAACAATGA-------------------A--A-ATA-----AA---TAAA------AATA-AAGTA-AATCA-A--GATAAGAAAC---T-TTTAACTC-------TTTCATCTTTTTTATTC--TTT-C--TTTCTTTCCGA-CTCAG-CATACAATCGAAATAAATTACATGG-----GGAATTCATAGTT-TTG-GATTACGCCACGTGCGCCAATTCT-----CAGTAATCATGACCCACTACT-GATGAATACAA--GGTTT------ACCTGCTA-----------------------ATGT--T---GC---------------C-T---------------A-G-GTA---AT-A-------A---T-----------------ATT----A--------C-AT--------T-T-----GA---ATCGATCTCGCTACTCAGAAGAATTCGTTTCCGG--CAG---ATGTT---G---AG----GGTTGTT--------------------T------T-------C--C----------------AGATCATAA----ATGCTGCATGTTACACGA---------ATCcaaaccaatc
Alignments
lowQualScore : 11111111111111111111111111111111111111111
lowQualScore : 66666666666666666666666 44444444444444444444444 22222 11111111111 11111111111111111111111 3333333 11111 2222222 11 1111 1 111111 22 1111 11111 11 111111 11 111111 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1111111 7777777777777777777777777777777777777777777777 1 444444 11111 11111 11111111111111111111111111111111111111111 1111111 111 333333333333333333333 8888888888888888888888 11111 11111111 1 1 222222 222
lowQualScore : 0 33 77 1 555 11111111111111111111111 7777 5 6 999999 2 3 7777 55555555555555555555555 3 99999 1 1 3 2 4 2 11111111111 33333333 0 3 99999999999999999999999 555 7777777 3 3 4 4 44444 888 1111111 3 55 1111 1 5 44 0 777777 1 77 5 5 0000 22222 0 5 66 00 222222 33 33 111111 3 99 777 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 22 7777 3 555 55 3333333 666 666 2222222222222222222222222222222222222222222222 66 33 0 3 4 000000 0 1 22222 22222 00000000000000000000000000000000000000000 8888888 7 111 000000000000000000000 1 99 1 0 5 1 1 1 2 9999 4 66 1111111111111111111111 777 0 1 00000 44444444 3 4 4 6666 2 4 777 0 4 0 0 5 0 1 555555 000
lowQualScore : . .. .. . ... ....................... .... . . ...... . . .... ....................... . ..... . . . . . . ........... ........ . . ....................... ... ....... . . . . ..... ... ....... . .. .... . . .. . ...... . .. . . .... ..... . . .. .. ...... .. .. ...... . .. ... ............................................................................................. .. .... . ... .. ....... ... ... .............................................. .. .. . . . ...... . . ..... ..... ......................................... ....... . ... ..................... . .. . . . . . . . .... . .. ...................... ... . . ..... ........ . . . .... . . ... . . . . . . . ...... ...
lowQualScore : 3 99 99 0 000 11111111111111111111111 6666 2 4 666666 2 3 1111 99999999999999999999999 1 22222 9 2 3 9 2 3 00000000000 22222222 4 3 55555555555555555555555 888 8888888 3 6 4 4 11111 888 7777777 7 88 2222 0 0 77 7 777777 0 88 0 0 6666 55555 1 0 99 00 888888 99 66 555555 0 55 000 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 88 1111 3 888 00 6666666 444 444 7777777777777777777777777777777777777777777777 11 66 0 0 5 444444 2 0 55555 55555 55555555555555555555555555555555555555555 6666666 5 777 888888888888888888888 5 22 4 4 7 7 0 4 8 4444 4 99 0000000000000000000000 666 1 4 00000 00000000 6 8 0 8888 1 0 000 1 0 4 0 0 4 4 111111 555
consensus : NACGACTTCCCACGGAGAT--TT--GAANGATTCATACA---T--------T---TGTG------AATCATGTC---ATATTCTTAATATCGTA------TACATTT-CTA----CATTTCTTTAACATGCTCAGAGAACA-C------------TA-------TTTGATACACA-CA-TTGAACTGACATAATTGCACGCTT-ATCACAATACTGNTAAACTA-T--C------TACTGGTCAATCACGACCTAC-GTT-------AATA--A-A-A-----AA---TAAA--T---AATA-AAGTA-AAACA-AA-GATGCGAAAC---T-TTT---TC-------TTTCATCCATTTCGCTC--TTT-C--TTTCATTCCAAACTCATTCATATGATCGAAATGTATTACACGG-----NAAATTCANA-CT-TTG-GATTACGACACGT----CAGGTTT-----CAGTAATTATAACCCCCTACT-GATGA--ACAATTTATTT------ATTTGATATGTTTTAACCAGTAAC------TACGC--T---GC-----------A---T---------------ACG---ATA---AT-A----T--A---TAA-------N-----AT-A---A------TT--CATGCA----T-TGC---ACCGATCTCGCTATTCAGAAGAATTCGTTCCAGG--CAG---A---T---G---AG----G-----T--------------------T------T-------C--CATCATAATCGCTG-CAAGATCATAAAT--T-ATGCTGCACGTTANACG-----AATC-----AGTCC---G---------A--------C------A-TT------C-ATGGTTCCAA-------CATATATGGTTGCAACCCTCATTTNAATTAA---ATA------GTTTAATTTA-CC-CGATATCTTAATCGTAATAACCT--TTACAACAAATTGCAGCG-CGCCNACATTGACGTCACANTTAAGGGAG----ATAAGCGA-GGCAAAC--TTT---TTTAG--CGCCAGG-GCT-TTAA-GTTTTACCTGCAA-----TTACTAGT-------NCTTCGAACA-GGAATAAACCTTCGGATTAGCATATTTCGGCAATGTTTTAA-TG-G--TATTT-TT---TTGATTT-TTGAGGCT-AAT-AAACTATTTATTTTCATTGCTTATGACCTTT---ATAAGCAAATCGATATGAA
Reference ( family-4477 ) : NACGACTTCCCACGGAGAT--TT--GAANGATTCATACA---T--------T---TGTG------AATCATGTC---ATATTCTTAATATCGTA------TACATTT-CTA----CATTTCTTTAACATGCTCAGAGAACA-C------------TA-------TTTGATACACA-CA-TTGAACTGACATAATTGCACGCTT-ATCACAATACTGNTAAACTA-T--C------TACTGGTCAATCACGACCTAC-GTT-------AATA--A-A-A-----AA---TAAA--T---AATA-AAGTA-AAACA-AA-GATGCGAAAC---T-TTT---TC-------TTTCATCCATTTCGCTC--TTT-C--TTTCATTCCAAACTCATTCATATGATCGAAATGTATTACACGG-----NAAATTCANA-CT-TTG-GATTACGACACGT----CAGGTTT-----CAGTAATTATAACCCCCTACT-GATGA--ACAATTTATTT------ATTTGATATGTTTTAACCAGTAAC------TACGC--T---GC-----------A---T---------------ACG---ATA---AT-A----T--A---TAA-------A-----AT-A---A------TT--CATGCA----T-TGC---ACCGATCTCGCTATTCAGAAGAATTCGTTCCAGG--CAG---A---T---G---AG----G-----T--------------------T------T-------C--CATCATAATCGCTG-CAAGATCATAAAT--T-ATGCTGCACGTTANACG-----AATC-----AGTCC---G---------A--------C------A-T-------C-ATGGTTCCAA-------CATATATGGTTGCAACCCTCATTTNAATTAA---ATA------GTTTAATTTA-CC-CGATATCTTAATCGTAATAACCT--TTACAACAAATTGCAGCG-CGCCNACATTGACGTCACANTTAAGGGAG----ATAAGCGA-GGCAAAC--TTT---TTTAG--CGCCAGG-GCT-TTAA-GTTTTACCTGCAA-----TTACTAGT-------NCTTCGAACA-GGAATAAACCTTCGGATTAGCATATTTCGGCAATGTTTTAA-TG-G--TATTT-TT---TTGATTT-TTGAGGCT-AAT-AAACTATTTATTTTCATTGCTTATGACCTTT---ATAAGCAAATCGATATGAA
gi|1 : ATGACATTCCACAGAGAT--TT--GAACGGTTCATATA---T--------T---TG--------AACCATGTC---ATATTCGTATTATCAAA------TGCATT--CTT----TATTTCTTCAACATATTCAGAGAACA-CCTTTTACACCCTTAAACTTCCTTTGATATACA-CCCTTAAACTGGCATAACTACACGCTT-TTCACAATACTGATACACTA-T--C------TACTGGTCAATCACGACCTAC-ATT-------AATA--A-A-AT----AA---TAAA--TT--GATA-AGGTA-AAAAAGAA-AATGCGAAAC---T-TTT---TC-------TTTCAACCATTTCGCTC--TTT-C--TTTCATTCCAAACTCATTCGTATGATCACAATGTATTACACGG-----TAAATTCAGA-----TG-GATTACGACACGT----CAGGTTT-----CAGTTATTATAGCCCCCTACT-GATTA--ACAATTTATAT------ATTTGATATGTTTAAACCAGTAAC------GACAC--T---GC-----------A---T---------------ACG---ATA---AT-A----T--A---TAA-------A-----AA-A---A------AA--CATGCA----T-TGC---ACTGATCTCGCTATTTAGAAGAATTCGATCCAGG--CAT---A---T---G---AG----A-----T--------------------T------T-------C--CACCATGATCGCTG-CAAGATCATGAAT--TAATGCCACACGTTAAACA-----AATC-----CCTCC---A---------A--------T------A-T-------C-ATGGTTCCAT-------CATACATGGTTGCAACCCTCGTTTCAGTTAG---ATA------GTTTAATTTA-CCGAGATATCTTAATCGTAATAACCT--TTACAACAAGTTGCAGTG-TGTCTACATTGACGTCATAGGTGAGGGAG----ATAAGCGA-TGTAAAC--TTTTAATTTAGA-CGTTAGA-GCTCTTAA-GTTTTATCTGCAT-----TTACTAGT-------ACTTCAAGCA-GGAATACACCTTC----TAGCATATTTTGGCAATGTTTTAA-TA-G--TATTT-TT---TTGATTT-TAGAGATT-AAT-AAACTATTTATTTTCATTGCGTATGAACTTTACCATAAACAAATCGATATGAA
gi|10 : tTTCCCACGGATATGTTT--AAAGGATTCACACA---TGCATATATT---TGTG------CATCATGTC---ATATTCTTTATATCGTA------TATATTT-CTA----TATTTCTTTAACATGCTTAGAGAACA-C-------------A-------TTTCATACACA-CA-T--AACTGACATAATTACACGCTT-ACTACAATGATGTTAAA-TACT--C------TACTGCT----------CTAC-GTTGGAA---AATA--G-T-A-----AA---TAAA--TACAAATA-AA
gi|11 : aaatgggaataaaggtcaatgcaatgcataacatgtcatagttgacaacctgtacttggtgcaaaaatctcactagttagatgcatgaacgactgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGACTTCC---GGATAT--TTTTAAAGGATTCACACA---TGCATATATT---TGTG------CATCATGTC---CTACTCTTGATATCGTA------TATATTT-CTA----TATTTCTTTAATATGCTTAGAGAACA-C-------------A-------TTTGATGCACA-CA-T--AACTGACATAATTACACGCTT-ACCACAATGATGTTAAATAA-T--C------TACTGCT----------CTAC-GTT-------GA-A--A-A-ATAGTGAA---TAAA--T----ACA-AATTA-Ac
gi|12 : taaatgggaataaaggtcaatgcaatgcataacatgtcatagttgacaacctgtacttggtgcaaaaatcatctcactagttagatgcatgaacgactgtataaaactactttgtaatgaaagaaacttacccacacaacatcagtagtgagagataagtgacctcggtgcagcaacatgaaccactttaccacggcacagagGACTTCCCACGGATAT--TTTTAAAGGATTCACACA---TGCATATATT---TGTG------CAACATATC---CTATTCTTAATATCGTA------TATATTT-CTA----TATTTCTTTAACATGCTTAGAGAACA-C-------------A-------TTTGATACACA-CA-T--AACTGACATAATTACACGCTT-ACTACAATGATGTTAAATAA-T--C------TACTGCT----------CTAC-GTT-------GAAA--A-A-T-----AG---TAAA--TG--AATACAAATA-AA
gi|13 : taaatgggaataaaggtcaatgcaatgcataacatgtcatagttgacaacctgtacttggtgcaaaaatctcactagttagatgcatgaatgacatcataaaactactttgtaacgaaaggtgcagcaacatgaaccactttaccacggcacagag---T---------------ACA---ATA---ATCA----TT-A---TAA-------T-----AT-A---T------TTT-CATGCA----T-TGT---ACCGATCTCACT-----------------CCAGG--CAG---A---T---GTTGAG----G-----T--------------------TCGTTTTT-------C--CATCATACTCGCTG-CAAAATCA-AAA-----ATGCTGCACGTTACACGATATGAATCCCCCCACTCCCCCGCACCCATCCA--------CCTC---A-T-------CCATTGTTCCAA-------CATATATGGTTGCGATCCTCATTT-AATTAA---ATACTAGTAGTTTAATATC-CC-CGACATCTTAAACGTAATAACCAAATTACAACAAATTGCAGAA-AGCATACCTTGATGTCACAGTTTAGGGTA----ATAAGCGA-GGCAAA
gi|14 : cagacagatgttgcactgagcctagatacgaacaagacAATTATAAACCCCATCT-TATGA--ATAATATATTT------ACTGAATA-GTTTTAACTAGTAAT------TACAC--TACAGC-----------A---TGAAATACTACAA---ACA---A-A---AT-A----T--ACCATAATTATTGTA-----AT-AC--A------TTATTATTCA----T-TGC---ACAGATCTTACTATGCAGAAAAAGTTGTTCAAGG--CAG---ATGTT---G---AGTGTCG-----T--------------------T------TTTTTTTAC--CGTCATAATTGTTG-TCAGATCATAA------ATGCTGCATGTTACATG-----ATTC-----AGCTT---G---------ATCCCTGTCC------ATT-------C-ATTGTTCAAA-------CATA
gi|15 : GACTTCCCACAGAGAT--TT--GAAGGATTCATACA---T--------attacctgtgtcttgtttcaacta
gi|16 : ctcccactgcccaaactcctacgcataaggtaataaaagacggaccacagaggttttcattcatgaaaataaaggtcatatacccagtacttttcgatgagaaaaagttcactagtcagatgcatgaatatgactgcgtaaaacttcagtaattttgtacagaatggaactcaaactcacaacatcaggctgtagcagggaccactaggccacggcacacagAC------TACTCG-T---AT-----------A---T---------------ACG---TTA---ATCA----T--T---TAT-------A-----AT-A---T------TTT-CATG-A----TGTGC---ACCGATCACGCCATTCGGAAGAATTCGTTCCAGA--CAG---A---T---G---gcatacatttg
gi|16 : agtaacaattattctgtactgcagatggacggtataaattgaccagtaacaacaataccgtactgtgcagagacacatatatag---T---------------ACA---ATA---ATCA----TT-A---TAA-------T-----AT-A---T------TTT-CATGCA----T-TGT---ACCGATCTCACTttgcactgagcctagatacgaacaagactacaataatcattataatatattttcatgcattgtaccgatctcactccagg
gi|17 : agtaacaattattctgtactgcagatggacggtataaattgaccagtaacaacaataccgtactgtgcagagacacatatatagactactcgtatatacgttaatcatttataatattttcatgatgtgcaccgatcacgccattcggaagaattcgttccagacagatgttgcactgagcctagatacgaacaagacA------TA-ATTT-CTGTTTCCAGTTCTTTAACATGTTCAGATAACA-C-------------G-------TTTGATACACA-CA---GAAATGACATAAGTGCAC------TCACAACACTGATCAACTA-T--C------TACTTGTCAATCTCAACCTAA-GTT-------GATA--AGA-A-----AA---TACA--C----ATT-AAGTA-AAACA-AA-TATGCGAAACACAT-TTT---ccagg
gi|18 : atggacattcacataaatagcggctagtgatttttttctgtttaatggtatcaaagaaCAGTG-CGCCGACATCGACGTTACATTTAAGGGAA----ATAAGCCA-GGTAAAC--ATT---T---------------CT-TTAA-GATT-----GCAAATAGATTATTAGT-------TCTTCGAACA-GGAATAAAACTTCGGATTAGCATTTTTAAGAAATGTTTTAT-TG-G--TATCT-TT---TAATTTT-TTGAGCCG-AAT-AAACTATTCATTTTTATTGCTTATGGCCTT-----TAAGCAAAT---TATAAAagcaa
gi|19 : ttACAAA---CAGCGTCG--TA-ATTGATGTCACAGTCAAGGAAG----ATAAGCGA-GACTAAC--ATT---T---G---GCCAGGTG---TTAC-ACTTTACCGACAA-----TAATAAGT-------ACTTCTGACA-GGAACAAACCATCGGATTGGCATATTTCGGCAATGTTTTGA-TA-A--TA-TA-TT---TCGATTT-t
gi|2 : ccgagatctaaattatGACTTTCCACAGAGAT--TT--GAAAGATTCATACA---TGCAATCATT---TGTG------AATTATGTC---CTGTTCTTATAATAATA------TATATTTTCTA----AATTTATTTAACAC-------------C------------T---------TTGATACAAA-CG---GGACTGACATAATTGCACGTTT-ATCACAATACGGGTGAACTA-TAACTATATATATTGGCCAATCCCAACTAAC-GTT-------AGTA---------------------------AATA-AAGCA-GGACC-AATGATGCG--AT---TGTTT---TCTTTATTATTTTATTCATTTCATTCA-TTTGCCATTCCATTCTAAACTCATT-ATGTGAT-GAAGTGTATTACACAGCCAAAAAAAATCACA-TT-TCG-GACTACCACTCGT----CCTATTTGATGCCAGTGACTATgtttccattaataatgacct
gi|2 : gcacggggT------ATTTGATG--------CCAGTGAC------TATTC--T---GC-----------ACCGT---------------GCA---GAG---AC-G----C--A---AAA-------C-----AT-ATGTG------TT----TGTA----T--GC---ACCGAT--------------GAATTCGTTCCAG----AA---G---T---G---TC----G-----T--------------------T------T-------AAGCATTATAATAACTGACAA-ATCGTAAATGCT-ACGCTG------AAACG-----AACC-----AGTTT---G---------A--------CTCTTTCA-TTC-----C-ATGGTTCCTA-------TATATAAGATTGCAACCCTCATTTAAATTAA---ATA--------------------------TTTGATCATAATAACCT--TTTAAACCATTTGCAGTG-TGCCGACATTGACAT-------------G----ATATGCGT-GATAACC--TTT----------CGCCAGGTGC---TAA-GTTTTACCTGTAA-----TTACCAGT-------TCTTTGAACA-GTAATtctgcaccgtgcagagacgcaaaacatatgtgtttgtatgcaccgatgaattcgttccagaagtgtcgtttaagcattataataactgacaaatcgtaaatgctacgctgaaacgaaccagtttgactctttcattccatggttcctatatataagattgcaaccctcatttaaattaaatatttgatcataataaccttttaaaccatttgcagtgtgccgacattgacatgatatgcgtgataacctttcgccaggtgctaagttttacctgtaattaccagttctttgaacagtaattattttagggctgaattaactatttattttcatttcttatgaccttta
gi|2 : gcacgggggactttccacagagatttgaaagattcatacatgcaatcatttgtgaattatgtcctgttcttataataatatatattttctaaatttatttaacacctttgatacaaacgggactgacataattgcacgtttatcacaatacgggtgaactataactatatatattggccaatcccaactaacgttagtaaataaagcaggaccaatgatgcgattgttttctttattattttattcatttcattcatttgccattccattctaaactcattatgtgatgaagtgtattacacagccaaaaaaaatcacatttcggactaccactcgtccTT-TTAGGGCTGAAT-TAACTATTTATTTTCATTTCTTATGACCTTT---Atattttagggctgaattaactatttattttcatttcttatgaccttta
gi|20 : gcacgggggactttccacagagatttgaaagattcatacatgcaatcatttgtgaattatgtcctgttcttataataatatatattttctaaatttatttaacacctttgatacaaacgggactgacataattgcacgtttatcacaatacgggtgaactataactatatatattggccaatcccaactaacgttagtaaataaagcaggaccaatgatgcgattgttttctttattattttattcatttcattcatttgccattccattctaaactcattatgtgatgaagtgtattacacagccaaaaaaaatcacatttcggactaccactcgtcctatttgatgccagtgactattctgcaccgtgcagagacgcaaaacatatgtgtttgtatgcaccgatgaattcgttccagaagtgtcgtttaagcattataataactgacaaatcgtaaatgctacgctgaaacgaaccagtttgactctttcattccatggttcctatatataagattgcaaccctcatttaaattaaatatttgatcataataaccttttaaaccatttgcagtgtgccgacattgacatgatatgcgtgataacctttcgccaggtgctaagttttacctgtaattaccagttctttgaacagtaattaTCCCACAGAGAT--TT--AAACTATTCGTACACGCT--------TACATTTT------AATCATTCT---ATATTCTTATTATCTTA------TACATTT-ATA----CATTTCTTTAACATGCTCAGA-------------------TC-------TTTAATGCGTA-CCTTTGAACTGACAT-ATTG
gi|20 : TTTAA-TGCG--TACCT-TTGAACTGACATATTGATG---AAT-ACACTTTTTATTTCCATTGC-TATGACCTTT---A-AAGTAAATatgaatacactttttatttccattgctatgacctttaaagtaaatacagtggacaaatatttc
gi|21 : tcccacagagatttaaactattcgtacacgcttacattttaatcattctatattcttattatcttatacatttatacatttctttaacatgctcagatcGACTTCCT-CAGAGAT--TT--GGACGATTCATACA---T--------acagtggacaaatatttc
gi|21 : acagagA------TACATGC-ATA----CATTTCTTTAACATGCTCAGAGAACACC------------TA---------CGAACCACA-CGTTTGGACTGATATAA-TGTACACTT-ATCACGATGCTG-------A-T--C------TACTGGCCAATGACGTCCTACAAAT-------AATA--A-A-A-----AAAGTTAAA--TACAAATG-AAATATAAATA-AA-GATgcatacatttctttaacatgctcagagaacacctacgaaccacacgtttggactgatataatgtacacttatcacgatgctgatctactggccaatgacgtcctacaaataataaaaaaagttaaatacaaatgaaatataaataaagat
gi|22 : acagaggacttcctcagagatttggacgattcGACTTTCCACGGGGAT--TC--GAAGGATTCATACA---T--------
gi|23 : gagaagaaactctaagtcagatacatgaacatgaccaagtataactgccattaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTGACGTCA-AATTAAGGGAGGGATATAATTGA-GACGAAC--TTC---T------CGCCGGG-G-T-TTAC-AATTTACCTGCAA-----ATA--GGA-------AGTTAGA-CA-GGAATAACCCGTCGGAATAGCATTTGTCAGCAATGTTTAAA-TG-G--TA-TA-TT---TTGATTC-ATAGGACT---T-AAAC-ATTTATgcagacatctttaa
gi|24 : -TTGCGATTACGACACGT----CAGGTTT-----CAGTTATTATAACCCACAACT-GATGA--TAAA--TATTT------GATTGATA-GTTTTAACCAACATC------CACACAGT---AC-----------AT--T---------------GCG---GTG---AC-A----CGGA---CAA-------A-----AT-A---
gi|25 : GATTTCCCACAGAGAT--TT--GAAAGATTCATACA---T--------tacgataagcatactatatttcca
gi|26 : catagagGGAA----ACAAGCGA-TGCATAC--TTT---TTTAAGACGTTAAA-ACT-CTAAAGTTTTACCTGCAT-----TTACTAATACTTCGAACTTCGAACA-GGAATAAACCTTgcatacacagcctttgattttttgctctgattaaatacatgtaatagttattcttgtgattttattt
gi|27 : gat-GTTTTAATTGCAA-----TTGCTAGT-------ACTTCGGACATGAAACAGTCCGTCGGATAAGCATCTTTTGGCAATGTTTTAA-TG-T--TCTCT-TT---T
gi|28 : AA-----TGACTAGT-------GCTTCGAACA-GGAATTAATCTTCGGAGTAGCATA---CGACACTG--TTAATTG-G--TA-TT-TG---TTGATTT-Tagg
gi|29 : acaTTTCAGCAATGTTTTAA-TG-G--TA-TA-TT---TTGATTT-TTAAGGCTGAAT-GAACAATTCATTTTCATTGCTTA
gi|3 : cttGATTTCCCATAGAGAT--TT--GGAGGAGTCATATA---T-------------GC-------AATCGTGTCCCTATATTCTTA---TCTTA------TATATTT-CTA----CATTTCTTTAACATGCTCAGAGAACA--------------TA-------TTTGACAC-CA-AA-ATGA-CTAATATAATTTCACAATT-ATAACAATACTGATAAACTA-T--A------TACTGGTCTATCAAAACCTTC-GTT-------AATAAAA-A-A-----AA---TAAA--CACAAATA-AAGGA-AAATA-AT-CATGCGACA----T-TTT---TC-------ATGTATTCATTTCACTC--TAT-T--TTTTATTCCAAATTCATT-ATATGATCCAAATATGTTACACAA-----GAACTTCATA-ATATAG-GATTACGACGCGT----CATGATT-----CAGTAATTGTAACCCCGTACT-GATGA--ACACTATGTTT------ATTTGTTAT-TTTT-ACCAGTAAG------CACGC--T---GC-----------A---TCATGCAGAGACACTAACG---A-A---AT-ATATTT--A---TAA-------T-----AT-A---ATATTTTTT--CATGCA----T-TGC---ACCGATCTCGCTATTCAAAAGAATTCGTTCCAGG--C---------T---G---AA----C-----A--------------------T------A-------C--TATTGCGATATCTG-CCAGAGCATAG------ATGCTATACGATACACG-----AATC-----AGTGT---G---------ACCCTTCT-C------A-TTC-----C-ATGGTTCCGT-------CATTTAAGGTTGCAACTCCCATTTCTATTAA---ATA------GTTTCATTTA-CCTTGATATTTTAATTGTAATAACCT--TAACAACAAAT
gi|30 : agTGCAA-----TTACTCGT-------GTTTTGAATA-GGAATAAACCTTCGGATTAGCACATTTgactagt
gi|4 : tcttttagagtgtaaaacttACGACTTCCTACAGAGAT--TT--GAACGATTCATATA---T--------G---CATACAGCTAAATCATGCC---ATATTCTTAATATCATA------TGCATTT-CTA----CATTTCTTTAACATGCTCAGAGAATA-C------------C--------TTTGATAGACACCC-TTGAACTGACATAACTACACGCTT-ATTACAATACTGATACAATA-A--A------AAATGGCCAACCACGACATAC-ATC-------ATTA--A-A-G-----AA---TAAA--TACAAATA-CAGTA-AAACA-AA-GATGCAAAAC---T-TTT---CA-------TTTAAT-CATTTTGCCCTTTTT-T--TTTCATTCCAAA---AATCATATGATCAAAATGTATTACACAG-----TATATTCAGATCT-TTG-GA-----ATACGT----CAGGTTT-----GAGTGATTATAA-ACCCTGCT-GATGA--ACACTTTATTTCAAATCATTTGATATGTTTTAAACCGTAACTAAATGTACGC--T---GC-----------A---T----------------CGTGCAGAG--AC-A----T--A---TAC-------G-----AT-A---A------TT---ATATAATATT-TGT--------TCTCGCTATTCAGAAGAATTCGTTCCAGG--CAG---A---T---G---GG----
gi|5 : gTCCCACAACCAT--TT--GAACGATTCATACA---TACATAGA-T---T-TG------AATCATGCC---ATATTCTTAGCATT---------TGCATTT-CTC----AATTTCTTAAACATACTCAGAGAACA-C------------C--------TTTGGTACACA-CCTTTGAACTGACGTAACTACACGCTT-ATTACAATACTGATGCACTA-T--C------TACTAGTCATTCACGACCTAC-AGT-------AATA--C-A----------------------AATA-AGATA-AAACA-AA-AATGCAAAAC-----TTT---TC-------TTGCAACCATTTCGCTC--TTT-C--TTTCATACCAAACTCATT-ATATGATAAAAATATATTAAACAG-----TAAATTAACATCT-TTT-GATCACGACACGT----CAGGTTT-----CAGTAAATATAACCCCGTACTGGAGAA--ACTATTTATTT------ATTTGATATGTTTTAACCAGTAAC------TTCAC--T---GC-----------A---A---------------ACG---ATA---AT-A----T--A---TTA-------GGCTATAT-A---ATATGT-TT--CATGCA----T-TGC---GCAGATCTCGGTATTTAAAAGAATTTGTTCCCTG--CAG---A---T---G---AG----A-----T--------------------T------T-------C--CACCATtata
gi|6 : T-TTG-GATTACGACACGT----CAGGTTT-----CATTAATCATAACCTGCTACT-GTTGA--ACAAATCATGT------ACGTGTTATGATTTA-CCAGTAAC------TTCAC--T---TCCCCGTGAAGAGA---C---------------ACG---AAAGAAAT-A----T--AC--TAT-------A-----ATCAT--A------TT--CAATAA----T-TTCTTTACCGATCTCGCTATTCAGAAAATCTCGTTCCGTG--CAT---A---TATTG---AGTGTCG-----T--------------------T------TTT-----C--CATAATAATTACTGACAA-ATAATAAAT--TTATGCTACACGTTAAACA-----AATC-----AGTCT---G---------A--------CC-----A-T-------GGATGGTTCCAA-------CATGTATGAT-GCAACCCCTATTTAAATTAA---ATA------GTTTA--------------TTTTAATCGTAATGACCT--TTACACCAAATTGCAGCG-CGTCGGCATTGACGTCACATTTAAGAGAG----ATTAGCAATGTCAAAT--TTT---
gi|6 : tcattTTCGAACA-GTAATAAACCTTCGGATTAGCATATTTCGGAAATA---TAA-TA-AACTATCTATT---TTCATTG-TTcgaacagtaataaaccttcggattagcatatttcggaaatataataaactatctattttcattgtttatgacct
gi|6 : tcatttttggattacgacacgtcaggtttcattaatcataacctgctactgttgaacaaatcatgtacgtgttatgatttaccagtaacttcacttccccgtgaagagacacgaaagaaatatactataatcatattcaataatttctttaccgatctcgctattcagaaaatctcgttccgtgcatatattgagtgtcgtttttccataataattactgacaaataataaatttatgctacacgttaaacaaatcagtctgaccatggatggttccaacatgtatgatgcaacccctatttaaattaaatagtttattttaatcgtaatgacctttacaccaaattgcagcgcgtcggcattgacgtcacatttaagagagattagcaatgtcaaattT-AAT-AAACTATCTATTTTCATTGTTTATGACCTtatgacct
gi|7 : tcatttttggattacgacacgtcaggtttcattaatcataacctgctactgttgaacaaatcatgtacgtgttatgatttaccagtaacttcacttccccgtgaagagacacgaaagaaatatactataatcatattcaataatttctttaccgatctcgctattcagaaaatctcgttccgtgcatatattgagtgtcgtttttccataataattactgacaaataataaatttatgctacacgttaaacaaatcagtctgaccatggatggttccaacatgtatgatgcaacccctatttaaattaaatagtttattttaatcgtaatgacctttacaccaaattgcagcgcgtcggcattgacgtcacatttaagagagattagcaatgtcaaattttcgaacagtaataaaccttcggattagcatatttcggaaata-----------A---T---------------AGG---ATA---ATCA----T--A---CAT-------G-----AT-AGT-A------TT--T---CA----T-TTC---ACCTATATCTCTATTAAGAAGAGCGTATTCCGGGTTCAATATA---T---G---GA----G-----TGTCATTATCGAATGTCCTTTT------T-------C--GATCATAATCGCTG-CCAGATCACAAAT--TCATGCTGCGAGTTAAAGG-----AATC-----AGTCT---G---------A--------T------AGTTTTTTTAC-ATGGTTCCAAAAGGGTGCA-ATGTGGTTGTAACCATCATTGTAATTAAATTATG------GTTTAATTTATCC-CGATATCT--------------------CAACAAAGTCCAGCA-CGCCCACATTTAGGTCACATTTAAGAAAG----ATAAGCGA-GGTAAACATTTT---TTTAA---GATAG-------TAA------AACTGAAA-----GTACTAGT-------TCTTCGAACA-GGAATAAACTTTCGGTTTAGCATATTTAGAAAATTATTTAA-TG-A--TATTT-TT---TT-AC-------GGCT-GATAAAACTATTTATTTTCATTGCTCATGAC
gi|8 : aaataattTTCCCACGGAGAT--TT---AATGA---ATATG---T--------T---TGTG------CATCATGTC---CTATTATTTATATCATAAAATTATATATTT-CTA----CATTTCCTTAACATGCTCAGAGAACA--------------TA-------TTTGATACACA-TA-T--AACTGACATA--------TTT-ATTAAAATGCTGTGAAATTG-T--C------TACCGATCAATCACAACCTAC-GTTTAAAAAGAACA--A-A-A-----AA---TAAAACC---AATG-AAATA-TAACC-AA-GATGCGAAAC---A-TTT---t
gi|9 : aaattggaatgaaggccaatgtaatgcataacaggtcatatttgacaacctgtacttttggtgtaaaacaactcactagtcatatgcatgagcaactgcgtagaactacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATGCTCATATAACA-C------------T---------TTGATACACA-CA-A-AAACTGACATAATTGCACGCTTTAT-ACAATAC-AATAACCTA------------------CAACAATGA-------------------A--A-ATA-----AA---TAAA------AATA-AAGTA-AATCA-A--GATAAGAAAC---T-TTTAACTC-------TTTCATCTTTTTTATTC--TTT-C--TTTCTTTCCGA-CTCAG-CATACAATCGAAATAAATTACATGG-----GGAATTCATAGTT-TTG-GATTACGCCACGTGCGCCAATTCT-----CAGTAATCATGACCCACTACT-GATGAATACAA--GGTTT------ACCTGCTA-----------------------ATGT--T---GC-----------C---T---------------A-G---GTA---AT-----------------------A-----AT-A---T------TA--CAT-------T-TGA---ATCGATCTCGCTACTCAGAAGAATTCGTTTCCGG--CAG---ATGTT---G---AG----GGTTGTT--------------------T------T-------C--C----------------AGATCATAA------ATGCTGCATGTTACACG-----AATC-----AG-CC---G---------caaaccaatc
Alignments
lowQualScore : 66666666666666666666666 44444444444444444444444 22222 11111111111 1111111 111111111111 3333333333 11111 2222222 11 1111 1 111111 22 1111 11111 11 111111 11 222222 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1111111 7777777777777777777777777777777777777777777777 1 444444 11111 11111 999999999999999999999999999999999999999 1111111 111 333333333333333333333 8888888888888888888888 11111 11111111 1 1 222222 222
lowQualScore : 0 33 77 1 555 11111111111111111111111 7777 5 6 999999 2 3 7777 55555555555555555555555 3 99999 1 1 3 2 4 2 11111111111 33333333 0 3 7777777 0 3 777777777777 7777777777 3 3 4 4 44444 888 1111111 3 55 1111 1 5 44 0 777777 1 77 5 5 0000 22222 0 5 66 00 222222 33 33 777 000000 3 4 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 3 555 55 3333333 666 666 2222222222222222222222222222222222222222222222 66 33 0 3 4 000000 0 1 22222 22222 111111111111111111111111111111111111111 5 8888888 7 111 000000000000000000000 1 99 1 0 5 1 1 1 2 9999 4 66 1111111111111111111111 777 0 1 00000 44444444 3 4 4 6666 2 4 777 0 4 0 0 5 0 1 555555 000
lowQualScore : . .. .. . ... ....................... .... . . ...... . . .... ....................... . ..... . . . . . . ........... ........ . . ....... . . ............ .......... . . . . ..... ... ....... . .. .... . . .. . ...... . .. . . .... ..... . . .. .. ...... .. .. ... ...... . . ...................................................................................................................... . ... .. ....... ... ... .............................................. .. .. . . . ...... . . ..... ..... ....................................... . ....... . ... ..................... . .. . . . . . . . .... . .. ...................... ... . . ..... ........ . . . .... . . ... . . . . . . . ...... ...
lowQualScore : 3 99 99 0 000 11111111111111111111111 6666 2 4 666666 2 3 1111 99999999999999999999999 1 22222 9 2 3 9 2 3 00000000000 22222222 4 3 9999999 5 3 222222222222 8888888888 3 6 4 4 11111 888 7777777 7 88 2222 0 0 77 7 777777 0 88 0 0 6666 55555 1 0 99 00 888888 99 66 000 000000 0 0 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 3 888 00 6666666 444 444 7777777777777777777777777777777777777777777777 11 66 0 0 5 444444 2 0 55555 55555 222222222222222222222222222222222222222 7 6666666 5 777 888888888888888888888 5 22 4 4 7 7 0 4 8 4444 4 99 0000000000000000000000 666 1 4 00000 00000000 6 8 0 8888 1 0 000 1 0 4 0 0 4 4 111111 555
consensus : NACGACTTCCCACGGAGAT--TT--GAANGATTCATACA---T--------T---TGTG------AATCATGTC---ATATTCTTAATATCGTA------TACATTT-CTA----CATTTCTTTAACATGCTCAGAGAACA-C------------TA-------TTTGATACACA-CA-TTGAACTGACATAATTGCACGCTT-ATCACAATACTGNTAAACTA-T--C------TACTGGTCAATCACGACCTAC-GTT-------AATAA-A-A-----AA---TAAA--T---A---ATA-AAGTA-AAACA-AA-GATGCGAAAC---T-TTT---TC-------TTTCATCCATTTCGCTC--TTT-C--TTTCATTCCAAACTCATTCATATGATCGAAATGTATTACACGG-----NAAATTCANA-CTTT-G-GATTACGACACGT----CAGGTTT-----CAGTAATTATAACCCCCTACT-GATGA--ACAATTTATTT------ATTTGATATGTTTTAACCAGTA---AC------TACGC-TGC-----------A-----------T---------------AC-G---A-TA-AT-A----T--A-TA----ANATA---A------TT---------------CATGC------A----T-TGC---ACCGATCTCGCTATTCAGAAGAATTCGTTCCAGG--CAG---A---T---G---AG----G-----T--------------------T------T-------C--CATCATAATCGCTG-CAAGATCATAAAT--T-ATGCTGCACGTTANACG-----AATC-----AGTCC---G---------A--------C------A-TT------C-ATGGTTCCAA-------CATATATGGTTGCAACCCTCATTTNAATTAA---ATA------GTTTAATTTA-CC-CGATATCTTAATCGTAATAACCT--TTACAACAAATTGCAGCG-CGCCNACATTGACGTCACANTTAAGGGAG----ATAAGCGA-GGCAAAC--TTT---TTTAG--CGCCAGG-GCT-TTAA-GTTTTACCTGCAA-----TTACTAGT-------NCTTCGAACA-GGAATAAACCTTCGGATTAGCATATTTCGGCAATGTTTTAA-TG-G--TATTT-TT---TTGATTT-TTGAGGCT-AAT-AAACTATTTATTTTCATTGCTTATGACCTTT---ATAAGCAAATCGATATGAA
Reference ( family-4477 ) : NACGACTTCCCACGGAGAT--TT--GAANGATTCATACA---T--------T---TGTG------AATCATGTC---ATATTCTTAATATCGTA------TACATTT-CTA----CATTTCTTTAACATGCTCAGAGAACA-C------------TA-------TTTGATACACA-CA-TTGAACTGACATAATTGCACGCTT-ATCACAATACTGNTAAACTA-T--C------TACTGGTCAATCACGACCTAC-GTT-------AATAA-A-A-----AA---TAAA--T---A---ATA-AAGTA-AAACA-AA-GATGCGAAAC---T-TTT---TC-------TTTCATCCATTTCGCTC--TTT-C--TTTCATTCCAAACTCATTCATATGATCGAAATGTATTACACGG-----NAAATTCANA-CTTT-G-GATTACGACACGT----CAGGTTT-----CAGTAATTATAACCCCCTACT-GATGA--ACAATTTATTT------ATTTGATATGTTTTAACCAGTA---AC------TACGC-TGC-----------A-----------T---------------AC-G---A-TA-AT-A----T--A-TA----ANATA---A------TT---------------CATGC------A----T-TGC---ACCGATCTCGCTATTCAGAAGAATTCGTTCCAGG--CAG---A---T---G---AG----G-----T--------------------T------T-------C--CATCATAATCGCTG-CAAGATCATAAAT--T-ATGCTGCACGTTANACG-----AATC-----AGTCC---G---------A--------C------A-TT------C-ATGGTTCCAA-------CATATATGGTTGCAACCCTCATTTNAATTAA---ATA------GTTTAATTTA-CC-CGATATCTTAATCGTAATAACCT--TTACAACAAATTGCAGCG-CGCCNACATTGACGTCACANTTAAGGGAG----ATAAGCGA-GGCAAAC--TTT---TTTAG--CGCCAGG-GCT-TTAA-GTTTTACCTGCAA-----TTACTAGT-------NCTTCGAACA-GGAATAAACCTTCGGATTAGCATATTTCGGCAATGTTTTAA-TG-G--TATTT-TT---TTGATTT-TTGAGGCT-AAT-AAACTATTTATTTTCATTGCTTATGACCTTT---ATAAGCAAATCGATATGAA
gi|1 : ATGACATTCCACAGAGAT--TT--GAACGGTTCATATA---T--------T---TG--------AACCATGTC---ATATTCGTATTATCAAA------TGCATT--CTT----TATTTCTTCAACATATTCAGAGAACA-CCTTTTACACCCTTAAACTTCCTTTGATATACA-CCCTTAAACTGGCATAACTACACGCTT-TTCACAATACTGATACACTA-T--C------TACTGGTCAATCACGACCTAC-ATT-------AATAA-A-AT----AA---TAAA--TT--G---ATA-AGGTA-AAAAAGAA-AATGCGAAAC---T-TTT---TC-------TTTCAACCATTTCGCTC--TTT-C--TTTCATTCCAAACTCATTCGTATGATCACAATGTATTACACGG-----TAAATTCAGA----T-G-GATTACGACACGT----CAGGTTT-----CAGTTATTATAGCCCCCTACT-GATTA--ACAATTTATAT------ATTTGATATGTTTAAACCAGTA---AC------GACAC-TGC-----------A-----------T---------------AC-G---A-TA-AT-A----T--A-TA----AAAAA---A------AA---------------CATGC------A----T-TGC---ACTGATCTCGCTATTTAGAAGAATTCGATCCAGG--CAT---A---T---G---AG----A-----T--------------------T------T-------C--CACCATGATCGCTG-CAAGATCATGAAT--TAATGCCACACGTTAAACA-----AATC-----CCTCC---A---------A--------T------A--T------C-ATGGTTCCAT-------CATACATGGTTGCAACCCTCGTTTCAGTTAG---ATA------GTTTAATTTA-CCGAGATATCTTAATCGTAATAACCT--TTACAACAAGTTGCAGTG-TGTCTACATTGACGTCATAGGTGAGGGAG----ATAAGCGA-TGTAAAC--TTTTAATTTAGA-CGTTAGA-GCTCTTAA-GTTTTATCTGCAT-----TTACTAGT-------ACTTCAAGCA-GGAATACACCTTC----TAGCATATTTTGGCAATGTTTTAA-TA-G--TATTT-TT---TTGATTT-TAGAGATT-AAT-AAACTATTTATTTTCATTGCGTATGAACTTTACCATAAACAAATCGATATGAA
gi|10 : tTTCCCACGGATATGTTT--AAAGGATTCACACA---TGCATATATT---TGTG------CATCATGTC---ATATTCTTTATATCGTA------TATATTT-CTA----TATTTCTTTAACATGCTTAGAGAACA-C-------------A-------TTTCATACACA-CA-T--AACTGACATAATTACACGCTT-ACTACAATGATGTTAAA-TACT--C------TACTGCT----------CTAC-GTTGGAA---AATAG-T-A-----AA---TAAA--TACAA---ATA-AA
gi|11 : aaatgggaataaaggtcaatgcaatgcataacatgtcatagttgacaacctgtacttggtgcaaaaatctcactagttagatgcatgaacgactgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGACTTCC---GGATAT--TTTTAAAGGATTCACACA---TGCATATATT---TGTG------CATCATGTC---CTACTCTTGATATCGTA------TATATTT-CTA----TATTTCTTTAATATGCTTAGAGAACA-C-------------A-------TTTGATGCACA-CA-T--AACTGACATAATTACACGCTT-ACCACAATGATGTTAAATAA-T--C------TACTGCT----------CTAC-GTT-------GA-AA-A-ATAGTGAA---TAAA--T-------ACA-AATTA-Ac
gi|12 : taaatgggaataaaggtcaatgcaatgcataacatgtcatagttgacaacctgtacttggtgcaaaaatcatctcactagttagatgcatgaacgactgtataaaactactttgtaatgaaagaaacttacccacacaacatcagtagtgagagataagtgacctcggtgcagcaacatgaaccactttaccacggcacagagGACTTCCCACGGATAT--TTTTAAAGGATTCACACA---TGCATATATT---TGTG------CAACATATC---CTATTCTTAATATCGTA------TATATTT-CTA----TATTTCTTTAACATGCTTAGAGAACA-C-------------A-------TTTGATACACA-CA-T--AACTGACATAATTACACGCTT-ACTACAATGATGTTAAATAA-T--C------TACTGCT----------CTAC-GTT-------GAAAA-A-T-----AG---TAAA--TG--A---ATACAAATA-AA
gi|13 : taaatgggaataaaggtcaatgcaatgcataacatgtcatagttgacaacctgtacttggtgcaaaaatctcactagttagatgcatgaatgacatcataaaactactttgtaacgaaaggtgcagcaacatgaaccactttaccacggcacagag-----------T---------------AC-A---A-TA-ATCA----TT-A-TA----ATATA---T------TTT--------------CATGC------A----T-TGT---ACCGATCTCACT-----------------CCAGG--CAG---A---T---GTTGAG----G-----T--------------------TCGTTTTT-------C--CATCATACTCGCTG-CAAAATCA-AAA-----ATGCTGCACGTTACACGATATGAATCCCCCCACTCCCCCGCACCCATCCA--------CCTC---A-TC------C-ATTGTTCCAA-------CATATATGGTTGCGATCCTCATTT-AATTAA---ATACTAGTAGTTTAATATC-CC-CGACATCTTAAACGTAATAACCAAATTACAACAAATTGCAGAA-AGCATACCTTGATGTCACAGTTTAGGGTA----ATAAGCGA-GGCAAA
gi|14 : cagacagatgttgcactgagcctagatacgaacaagacAATTATAAACCCCATCT-TATGA--ATAATATATTT------ACTGAATA-GTTTTAACTAGTA---AT------TACAC-TAC-----------AGCATGAAATACT---------------AC-A---AACA-AA-A----T--A-TA----CCATA---A------TTATTGTAATACATTATTATTC------A----T-TGC---ACAGATCTTACTATGCAGAAAAAGTTGTTCAAGG--CAG---ATGTT---G---AGTGTCG-----T--------------------T------TTTTTTTAC--CGTCATAATTGTTG-TCAGATCATAA------ATGCTGCATGTTACATG-----ATTC-----AGCTT---G---------ATCCCTGTCC------A-TT------C-ATTGTTCAAA-------CATA
gi|15 : GACTTCCCACAGAGAT--TT--GAAGGATTCATACA---T--------attacctgtgtcttgtttcaacta
gi|16 : ctcccactgcccaaactcctacgcataaggtaataaaagacggaccacagaggttttcattcatgaaaataaaggtcatatacccagtacttttcgatgagaaaaagttcactagtcagatgcatgaatatgactgcgtaaaacttcagtaattttgtacagaatggaactcaaactcacaacatcaggctgtagcagggaccactaggccacggcacacag---AC------TACTCGTAT-----------A-----------T---------------AC-G---T-TA-ATCA----TTTA-TA----ATATT----------TT---------------CATG-------A----TGTGC---ACCGATCACGCCATTCGGAAGAATTCGTTCCAGA--CAG---A---T---G---gcatacatttg
gi|16 : agtaacaattattctgtactgcagatggacggtataaattgaccagtaacaacaataccgtactgtgcagagacacatatatag-----------T---------------AC-A---A-TA-ATCA----TT-A-TA----ATATA---T------TTT--------------CATGC------A----T-TGT---ACCGATCTCACTttgcactgagcctagatacgaacaagactacaataatcattataatatattttcatgcattgtaccgatctcactccagg
gi|17 : agtaacaattattctgtactgcagatggacggtataaattgaccagtaacaacaataccgtactgtgcagagacacatatatagactactcgtatatacgttaatcatttataatattttcatgatgtgcaccgatcacgccattcggaagaattcgttccagacagatgttgcactgagcctagatacgaacaagacA------TA-ATTT-CTGTTTCCAGTTCTTTAACATGTTCAGATAACA-C-------------G-------TTTGATACACA-CA---GAAATGACATAAGTGCAC------TCACAACACTGATCAACTA-T--C------TACTTGTCAATCTCAACCTAA-GTT-------GATAAGA-A-----AA---TACA--C-------ATT-AAGTA-AAACA-AA-TATGCGAAACACAT-TTT---ccagg
gi|18 : atggacattcacataaatagcggctagtgatttttttctgtttaatggtatcaaagaaCAGTG-CGCCGACATCGACGTTACATTTAAGGGAA----ATAAGCCA-GGTAAAC--ATT---T---------------CT-TTAA-GATT-----GCAAATAGATTATTAGT-------TCTTCGAACA-GGAATAAAACTTCGGATTAGCATTTTTAAGAAATGTTTTAT-TG-G--TATCT-TT---TAATTTT-TTGAGCCG-AAT-AAACTATTCATTTTTATTGCTTATGGCCTT-----TAAGCAAAT---TATAAAagcaa
gi|19 : ttACAAA---CAGCGTCG--TA-ATTGATGTCACAGTCAAGGAAG----ATAAGCGA-GACTAAC--ATT---T---G---GCCAGGTG---TTAC-ACTTTACCGACAA-----TAATAAGT-------ACTTCTGACA-GGAACAAACCATCGGATTGGCATATTTCGGCAATGTTTTGA-TA-A--TA-TA-TT---TCGATTT-t
gi|2 : ccgagatctaaattatGACTTTCCACAGAGAT--TT--GAAAGATTCATACA---TGCAATCATT---TGTG------AATTATGTC---CTGTTCTTATAATAATA------TATATTTTCTA----AATTTATTTAACAC-------------C------------T---------TTGATACAAA-CG---GGACTGACATAATTGCACGTTT-ATCACAATACGGGTGAACTA-TAACTATATATATTGGCCAATCCCAACTAAC-GTT-------AGTA-------------------------A---ATA-AAGCA-GGACC-AATGATGCG--AT---TGTTT---TCTTTATTATTTTATTCATTTCATTCA-TTTGCCATTCCATTCTAAACTCATT-ATGTGAT-GAAGTGTATTACACAGCCAAAAAAAATCACA-TTTC-G-GACTACCACTCGT----CCTATTTGATGCCAGTGACTATgtttccattaataatgacct
gi|2 : gcacggggT------ATTTGATG--------CCAGTG---AC------TATTC-TGC-----------ACCG--------T---------------GC-A---G-AG-AC-G----C--A-AA----ACATATGTG------TT-----------------TGT------A----T--GC---ACCGAT--------------GAATTCGTTCCAG----AA---G---T---G---TC----G-----T--------------------T------T-------AAGCATTATAATAACTGACAA-ATCGTAAATGCT-ACGCTG------AAACG-----AACC-----AGTTT---G---------A--------CTCTTTCA-TT------CCATGGTTCCTA-------TATATAAGATTGCAACCCTCATTTAAATTAA---ATA--------------------------TTTGATCATAATAACCT--TTTAAACCATTTGCAGTG-TGCCGACATTGACAT-------------G----ATATGCGT-GATAACC--TTT----------CGCCAGGTGC---TAA-GTTTTACCTGTAA-----TTACCAGT-------TCTTTGAACA-GTAATtctgcaccgtgcagagacgcaaaacatatgtgtttgtatgcaccgatgaattcgttccagaagtgtcgtttaagcattataataactgacaaatcgtaaatgctacgctgaaacgaaccagtttgactctttcattccatggttcctatatataagattgcaaccctcatttaaattaaatatttgatcataataaccttttaaaccatttgcagtgtgccgacattgacatgatatgcgtgataacctttcgccaggtgctaagttttacctgtaattaccagttctttgaacagtaattattttagggctgaattaactatttattttcatttcttatgaccttta
gi|2 : gcacgggggactttccacagagatttgaaagattcatacatgcaatcatttgtgaattatgtcctgttcttataataatatatattttctaaatttatttaacacctttgatacaaacgggactgacataattgcacgtttatcacaatacgggtgaactataactatatatattggccaatcccaactaacgttagtaaataaagcaggaccaatgatgcgattgttttctttattattttattcatttcattcatttgccattccattctaaactcattatgtgatgaagtgtattacacagccaaaaaaaatcacatttcggactaccactcgtccTT-TTAGGGCTGAAT-TAACTATTTATTTTCATTTCTTATGACCTTT---Atattttagggctgaattaactatttattttcatttcttatgaccttta
gi|20 : gcacgggggactttccacagagatttgaaagattcatacatgcaatcatttgtgaattatgtcctgttcttataataatatatattttctaaatttatttaacacctttgatacaaacgggactgacataattgcacgtttatcacaatacgggtgaactataactatatatattggccaatcccaactaacgttagtaaataaagcaggaccaatgatgcgattgttttctttattattttattcatttcattcatttgccattccattctaaactcattatgtgatgaagtgtattacacagccaaaaaaaatcacatttcggactaccactcgtcctatttgatgccagtgactattctgcaccgtgcagagacgcaaaacatatgtgtttgtatgcaccgatgaattcgttccagaagtgtcgtttaagcattataataactgacaaatcgtaaatgctacgctgaaacgaaccagtttgactctttcattccatggttcctatatataagattgcaaccctcatttaaattaaatatttgatcataataaccttttaaaccatttgcagtgtgccgacattgacatgatatgcgtgataacctttcgccaggtgctaagttttacctgtaattaccagttctttgaacagtaattaTCCCACAGAGAT--TT--AAACTATTCGTACACGCT--------TACATTTT------AATCATTCT---ATATTCTTATTATCTTA------TACATTT-ATA----CATTTCTTTAACATGCTCAGA-------------------TC-------TTTAATGCGTA-CCTTTGAACTGACAT-ATTG
gi|20 : TTTAA-TGCG--TACCT-TTGAACTGACATATTGATG---AAT-ACACTTTTTATTTCCATTGC-TATGACCTTT---A-AAGTAAATatgaatacactttttatttccattgctatgacctttaaagtaaatacagtggacaaatatttc
gi|21 : tcccacagagatttaaactattcgtacacgcttacattttaatcattctatattcttattatcttatacatttatacatttctttaacatgctcagatcGACTTCCT-CAGAGAT--TT--GGACGATTCATACA---T--------acagtggacaaatatttc
gi|21 : acagagA------TACATGC-ATA----CATTTCTTTAACATGCTCAGAGAACACC------------TA---------CGAACCACA-CGTTTGGACTGATATAA-TGTACACTT-ATCACGATGCTG-------A-T--C------TACTGGCCAATGACGTCCTACAAAT-------AATAA-A-A-----AAAGTTAAA--TACAA---ATG-AAATATAAATA-AA-GATgcatacatttctttaacatgctcagagaacacctacgaaccacacgtttggactgatataatgtacacttatcacgatgctgatctactggccaatgacgtcctacaaataataaaaaaagttaaatacaaatgaaatataaataaagat
gi|22 : acagaggacttcctcagagatttggacgattcGACTTTCCACGGGGAT--TC--GAAGGATTCATACA---T--------
gi|23 : gagaagaaactctaagtcagatacatgaacatgaccaagtataactgccattaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTGACGTCA-AATTAAGGGAGGGATATAATTGA-GACGAAC--TTC---T------CGCCGGG-G-T-TTAC-AATTTACCTGCAA-----ATA--GGA-------AGTTAG-ACA-GGAATAACCCGTCGGAATAGCATTTGTCAGCAATGTTTAAA-TG-G--TA-TA-TT---TTGATTC-ATAGGACT---T-AAAC-ATTTATgcagacatctttaa
gi|24 : TT-GCGATTACGACACGT----CAGGTTT-----CAGTTATTATAACCCACAACT-GATGA--TAAA--TATTT------GATTGATA-GTTTTAACCAACATCCACACAG--TACAT-TGCGGTG-------A-----------C---------------ACGG---A-CA-AA-A----T--A-TA----CGATA---A------
gi|25 : GATTTCCCACAGAGAT--TT--GAAAGATTCATACA---T--------gcatactatatttcca
gi|26 : catagagGGAA----ACAAGCGA-TGCATAC--TTT---TTTAAGACGTTAAA-ACT-CTAAAGTTTTACCTGCAT-----TTACTAATACTTCGAACTTCGAACA-GGAATAAACCTTgcatacacagcctttgattttttgctctgattaaatacatgtaatagttattcttgtgattttattt
gi|27 : gat-GTTTTAATTGCAA-----TTGCTAGT-------ACTTCGGACATGAAACAGTCCGTCGGATAAGCATCTTTTGGCAATGTTTTAA-TG-T--TCTCT-TT---T
gi|28 : AA-----TGACTAGT-------GCTTCGAACA-GGAATTAATCTTCGGAGTAGCATA---CGACACTG--TTAATTG-G--TA-TT-TG---TTGATTT-Tagg
gi|29 : acaTTTCAGCAATGTTTTAA-TG-G--TA-TA-TT---TTGATTT-TTAAGGCTGAAT-GAACAATTCATTTTCATTGCTTA
gi|3 : cttGATTTCCCATAGAGAT--TT--GGAGGAGTCATATA---T-------------GC-------AATCGTGTCCCTATATTCTTA---TCTTA------TATATTT-CTA----CATTTCTTTAACATGCTCAGAGAACA--------------TA-------TTTGACAC-CA-AA-ATGA-CTAATATAATTTCACAATT-ATAACAATACTGATAAACTA-T--A------TACTGGTCTATCAAAACCTTC-GTT-------AATAA-A-A-----AAAA-TAAA--C---ACAAATA-AAGGA-AAATA-AT-CATGCGACA----T-TTT---TC-------ATGTATTCATTTCACTC--TAT-T--TTTTATTCCAAATTCATT-ATATGATCCAAATATGTTACACAA-----GAACTTCATA-ATATAG-GATTACGACGCGT----CATGATT-----CAGTAATTGTAACCCCGTACT-GATGA--ACACTATGTTT------ATTTGTTAT-TTTT-ACCAGTA---AG------CACGC-TGC-----------A-----------TCATGCAGAGACACTAAC-G---A--A-AT-ATATTT--A-TA----ATATA---ATATTTTTT---------------CATGC------A----T-TGC---ACCGATCTCGCTATTCAAAAGAATTCGTTCCAGG--C---------T---G---AA----C-----A--------------------T------A-------C--TATTGCGATATCTG-CCAGAGCATAG------ATGCTATACGATACACG-----AATC-----AGTGT---G---------ACCCTTCT-C------A-TTC-----C-ATGGTTCCGT-------CATTTAAGGTTGCAACTCCCATTTCTATTAA---ATA------GTTTCATTTA-CCTTGATATTTTAATTGTAATAACCT--TAACAACAAAT
gi|30 : agTGCAA-----TTACTCGT-------GTTTTGAATA-GGAATAAACCTTCGGATTAGCACATTTgactagt
gi|4 : tcttttagagtgtaaaacttACGACTTCCTACAGAGAT--TT--GAACGATTCATATA---T--------G---CATACAGCTAAATCATGCC---ATATTCTTAATATCATA------TGCATTT-CTA----CATTTCTTTAACATGCTCAGAGAATA-C------------C--------TTTGATAGACACCC-TTGAACTGACATAACTACACGCTT-ATTACAATACTGATACAATA-A--A------AAATGGCCAACCACGACATAC-ATC-------ATTAA-A-G-----AA---TAAA--TACAA---ATA-CAGTA-AAACA-AA-GATGCAAAAC---T-TTT---CA-------TTTAAT-CATTTTGCCCTTTTT-T--TTTCATTCCAAA---AATCATATGATCAAAATGTATTACACAG-----TATATTCAGATCTTT-G-GA-----ATACGT----CAGGTTT-----GAGTGATTATAA-ACCCTGCT-GATGA--ACACTTTATTTCAAATCATTTGATATGTTTTAAACCGTA---ACTAAATGTACGC-TGC-----------A-----------T----------------C-GTGCA-GAGAC-A----T--A-TA----CGATA---A------TT----------------ATAT------AATATT-TGT--------TCTCGCTATTCAGAAGAATTCGTTCCAGG--CAG---A---T---G---GG----
gi|5 : gTCCCACAACCAT--TT--GAACGATTCATACA---TACATAGA-T---T-TG------AATCATGCC---ATATTCTTAGCATT---------TGCATTT-CTC----AATTTCTTAAACATACTCAGAGAACA-C------------C--------TTTGGTACACA-CCTTTGAACTGACGTAACTACACGCTT-ATTACAATACTGATGCACTA-T--C------TACTAGTCATTCACGACCTAC-AGT-------AATAC-A----------------------A---ATA-AGATA-AAACA-AA-AATGCAAAAC-----TTT---TC-------TTGCAACCATTTCGCTC--TTT-C--TTTCATACCAAACTCATT-ATATGATAAAAATATATTAAACAG-----TAAATTAACATCTTT-T-GATCACGACACGT----CAGGTTT-----CAGTAAATATAACCCCGTACTGGAGAA--ACTATTTATTT------ATTTGATATGTTTTAACCAGTA---AC------TTCAC-TGC-----------A-----------A---------------AC-G---A-TA-AT-A----T--ATTAGGCTATATA---ATATGT-TT---------------CATGC------A----T-TGC---GCAGATCTCGGTATTTAAAAGAATTTGTTCCCTG--CAG---A---T---G---AG----A-----T--------------------T------T-------C--CACCATtata
gi|6 : TTT-G-GATTACGACACGT----CAGGTTT-----CATTAATCATAACCTGCTACT-GTTGA--ACAAATCATGT------ACGTGTTATGATTTA-CCAGTA---AC------TTCAC-TTCCCCGTGAAGAGA-----------C---------------AC-G---A-AAGAA-A----T--A-TA----CTATA---A------T----------------CATATTCAATAA----T-TTCTTTACCGATCTCGCTATTCAGAAAATCTCGTTCCGTG--CAT---A---TATTG---AGTGTCG-----T--------------------T------TTT-----C--CATAATAATTACTGACAA-ATAATAAAT--TTATGCTACACGTTAAACA-----AATC-----AGTCT---G---------A--------CC-----A-TG------G-ATGGTTCCAA-------CATGTATGAT-GCAACCCCTATTTAAATTAA---ATA------GTTTA--------------TTTTAATCGTAATGACCT--TTACACCAAATTGCAGCG-CGTCGGCATTGACGTCACATTTAAGAGAG----ATTAGCAATGTCAAAT--TTT---
gi|6 : tcattTTCGAACA-GTAATAAACCTTCGGATTAGCATATTTCGGAAATA---TAA-TA-AACTATCTATT---TTCATTG-TTcgaacagtaataaaccttcggattagcatatttcggaaatataataaactatctattttcattgtttatgacct
gi|6 : tcatttttggattacgacacgtcaggtttcattaatcataacctgctactgttgaacaaatcatgtacgtgttatgatttaccagtaacttcacttccccgtgaagagacacgaaagaaatatactataatcatattcaataatttctttaccgatctcgctattcagaaaatctcgttccgtgcatatattgagtgtcgtttttccataataattactgacaaataataaatttatgctacacgttaaacaaatcagtctgaccatggatggttccaacatgtatgatgcaacccctatttaaattaaatagtttattttaatcgtaatgacctttacaccaaattgcagcgcgtcggcattgacgtcacatttaagagagattagcaatgtcaaattT-AAT-AAACTATCTATTTTCATTGTTTATGACCTtatgacct
gi|7 : tcatttttggattacgacacgtcaggtttcattaatcataacctgctactgttgaacaaatcatgtacgtgttatgatttaccagtaacttcacttccccgtgaagagacacgaaagaaatatactataatcatattcaataatttctttaccgatctcgctattcagaaaatctcgttccgtgcatatattgagtgtcgtttttccataataattactgacaaataataaatttatgctacacgttaaacaaatcagtctgaccatggatggttccaacatgtatgatgcaacccctatttaaattaaatagtttattttaatcgtaatgacctttacaccaaattgcagcgcgtcggcattgacgtcacatttaagagagattagcaatgtcaaattttcgaacagtaataaaccttcggattagcatatttcggaaata-----------A-----------T---------------AG-G---A-TA-ATCA----T--A-CA----TGATAGT-A------TT---------------T---C------A----T-TTC---ACCTATATCTCTATTAAGAAGAGCGTATTCCGGGTTCAATATA---T---G---GA----G-----TGTCATTATCGAATGTCCTTTT------T-------C--GATCATAATCGCTG-CCAGATCACAAAT--TCATGCTGCGAGTTAAAGG-----AATC-----AGTCT---G---------A--------T------AGTTTTTTTAC-ATGGTTCCAAAAGGGTGCA-ATGTGGTTGTAACCATCATTGTAATTAAATTATG------GTTTAATTTATCC-CGATATCT--------------------CAACAAAGTCCAGCA-CGCCCACATTTAGGTCACATTTAAGAAAG----ATAAGCGA-GGTAAACATTTT---TTTAA---GATAG-------TAA------AACTGAAA-----GTACTAGT-------TCTTCGAACA-GGAATAAACTTTCGGTTTAGCATATTTAGAAAATTATTTAA-TG-A--TATTT-TT---TT-AC-------GGCT-GATAAAACTATTTATTTTCATTGCTCATGAC
gi|8 : aaataattTTCCCACGGAGAT--TT---AATGA---ATATG---T--------T---TGTG------CATCATGTC---CTATTATTTATATCATAAAATTATATATTT-CTA----CATTTCCTTAACATGCTCAGAGAACA--------------TA-------TTTGATACACA-TA-T--AACTGACATA--------TTT-ATTAAAATGCTGTGAAATTG-T--C------TACCGATCAATCACAACCTAC-GTTTAAAAAGAACAA-A-A-----AA---TAAAACC---A---ATG-AAATA-TAACC-AA-GATGCGAAAC---A-TTT---t
gi|9 : aaattggaatgaaggccaatgtaatgcataacaggtcatatttgacaacctgtacttttggtgtaaaacaactcactagtcatatgcatgagcaactgcgtagaactacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATGCTCATATAACA-C------------T---------TTGATACACA-CA-A-AAACTGACATAATTGCACGCTTTAT-ACAATAC-AATAACCTA------------------CAACAATGA-------------------AA-ATA-----AA---TAAA------A---ATA-AAGTA-AATCA-A--GATAAGAAAC---T-TTTAACTC-------TTTCATCTTTTTTATTC--TTT-C--TTTCTTTCCGA-CTCAG-CATACAATCGAAATAAATTACATGG-----GGAATTCATAGTTTT-G-GATTACGCCACGTGCGCCAATTCT-----CAGTAATCATGACCCACTACT-GATGAATACAA--GGTTT------ACCTGCTA--------------------------ATGT-TGC-----------C-----------T---------------A--G---G-TA-AT-A-----------------ATA---T------TA---------------CAT-------------T-TGA---ATCGATCTCGCTACTCAGAAGAATTCGTTTCCGG--CAG---ATGTT---G---AG----GGTTGTT--------------------T------T-------C--C----------------AGATCATAA------ATGCTGCATGTTACACG-----AATC-----AG-CC---G---------caaaccaatc
Alignments
lowQualScore : 66666666666666666666666 44444444444444444444444 22222 11111111111 1111111 111111111111 3333333333 11111 2222222 11 1111 1 111111 22 1111 11111 11 111111 11 222222 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1111111 7777777777777777777777777777777777777777777777 1 444444 11111 11111 999999999999999999999999999999999999999 1111111 111 333333333333333333333 8888888888888888888888 11111 11111111 1 1 222222 222
lowQualScore : 0 33 77 1 555 11111111111111111111111 7777 5 6 999999 2 3 7777 55555555555555555555555 3 99999 1 1 3 2 4 2 11111111111 33333333 0 3 7777777 0 3 777777777777 7777777777 3 3 4 4 44444 888 1111111 3 55 1111 1 5 44 0 777777 1 77 5 5 0000 22222 0 5 66 00 222222 33 33 777 000000 3 4 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 3 555 55 3333333 666 666 2222222222222222222222222222222222222222222222 66 33 0 3 4 000000 0 1 22222 22222 111111111111111111111111111111111111111 5 8888888 7 111 000000000000000000000 1 99 1 0 5 1 1 1 2 9999 4 66 1111111111111111111111 777 0 1 00000 44444444 3 4 4 6666 2 4 777 0 4 0 0 5 0 1 555555 000
lowQualScore : . .. .. . ... ....................... .... . . ...... . . .... ....................... . ..... . . . . . . ........... ........ . . ....... . . ............ .......... . . . . ..... ... ....... . .. .... . . .. . ...... . .. . . .... ..... . . .. .. ...... .. .. ... ...... . . ...................................................................................................................... . ... .. ....... ... ... .............................................. .. .. . . . ...... . . ..... ..... ....................................... . ....... . ... ..................... . .. . . . . . . . .... . .. ...................... ... . . ..... ........ . . . .... . . ... . . . . . . . ...... ...
lowQualScore : 3 99 99 0 000 11111111111111111111111 6666 2 4 666666 2 3 1111 99999999999999999999999 1 22222 9 2 3 9 2 3 00000000000 22222222 4 3 9999999 5 3 222222222222 8888888888 3 6 4 4 11111 888 7777777 7 88 2222 0 0 77 7 777777 0 88 0 0 6666 55555 1 0 99 00 888888 99 66 000 000000 0 0 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 3 888 00 6666666 444 444 7777777777777777777777777777777777777777777777 11 66 0 0 5 444444 2 0 55555 55555 222222222222222222222222222222222222222 7 6666666 5 777 888888888888888888888 5 22 4 4 7 7 0 4 8 4444 4 99 0000000000000000000000 666 1 4 00000 00000000 6 8 0 8888 1 0 000 1 0 4 0 0 4 4 111111 555
consensus : NACGACTTCCCACGGAGAT--TT--GAANGATTCATACA---T--------T---TGTG------AATCATGTC---ATATTCTTAATATCGTA------TACATTT-CTA----CATTTCTTTAACATGCTCAGAGAACA-C------------TA-------TTTGATACACA-CA-TTGAACTGACATAATTGCACGCTT-ATCACAATACTGNTAAACTA-T--C------TACTGGTCAATCACGACCTAC-GTT-------AATAA-A-A-----AA---TAAA--T---A---ATA-AAGTA-AAACA-AA-GATGCGAAAC---T-TTT---TC-------TTTCATCCATTTCGCTC--TTT-C--TTTCATTCCAAACTCATTCATATGATCGAAATGTATTACACGG-----NAAATTCANA-CTTT-G-GATTACGACACGT----CAGGTTT-----CAGTAATTATAACCCCCTACT-GATGA--ACAATTTATTT------ATTTGATATGTTTTAACCAGTA---AC------TACGC-TGC-----------A-----------T---------------AC-G---A-TA-AT-A----T--A-TA----ANATA---A------TT---------------CATGC------A----T-TGC---ACCGATCTCGCTATTCAGAAGAATTCGTTCCAGG--CAG---A---T---G---AG----G-----T--------------------T------T-------C--CATCATAATCGCTG-CAAGATCATAAAT--T-ATGCTGCACGTTANACG-----AATC-----AGTCC---G---------A--------C------A-TT------C-ATGGTTCCAA-------CATATATGGTTGCAACCCTCATTTNAATTAA---ATA------GTTTAATTTA-CC-CGATATCTTAATCGTAATAACCT--TTACAACAAATTGCAGCG-CGCCNACATTGACGTCACANTTAAGGGAG----ATAAGCGA-GGCAAAC--TTT---TTTAG--CGCCAGG-GCT-TTAA-GTTTTACCTGCAA-----TTACTAGT-------NCTTCGAACA-GGAATAAACCTTCGGATTAGCATATTTCGGCAATGTTTTAA-TG-G--TATTT-TT---TTGATTT-TTGAGGCT-AAT-AAACTATTTATTTTCATTGCTTATGACCTTT---ATAAGCAAATCGATATGAA
Reference ( family-4477 ) : NACGACTTCCCACGGAGAT--TT--GAANGATTCATACA---T--------T---TGTG------AATCATGTC---ATATTCTTAATATCGTA------TACATTT-CTA----CATTTCTTTAACATGCTCAGAGAACA-C------------TA-------TTTGATACACA-CA-TTGAACTGACATAATTGCACGCTT-ATCACAATACTGNTAAACTA-T--C------TACTGGTCAATCACGACCTAC-GTT-------AATAA-A-A-----AA---TAAA--T---A---ATA-AAGTA-AAACA-AA-GATGCGAAAC---T-TTT---TC-------TTTCATCCATTTCGCTC--TTT-C--TTTCATTCCAAACTCATTCATATGATCGAAATGTATTACACGG-----NAAATTCANA-CTTT-G-GATTACGACACGT----CAGGTTT-----CAGTAATTATAACCCCCTACT-GATGA--ACAATTTATTT------ATTTGATATGTTTTAACCAGTA---AC------TACGC-TGC-----------A-----------T---------------AC-G---A-TA-AT-A----T--A-TA----ANATA---A------TT---------------CATGC------A----T-TGC---ACCGATCTCGCTATTCAGAAGAATTCGTTCCAGG--CAG---A---T---G---AG----G-----T--------------------T------T-------C--CATCATAATCGCTG-CAAGATCATAAAT--T-ATGCTGCACGTTANACG-----AATC-----AGTCC---G---------A--------C------A-TT------C-ATGGTTCCAA-------CATATATGGTTGCAACCCTCATTTNAATTAA---ATA------GTTTAATTTA-CC-CGATATCTTAATCGTAATAACCT--TTACAACAAATTGCAGCG-CGCCNACATTGACGTCACANTTAAGGGAG----ATAAGCGA-GGCAAAC--TTT---TTTAG--CGCCAGG-GCT-TTAA-GTTTTACCTGCAA-----TTACTAGT-------NCTTCGAACA-GGAATAAACCTTCGGATTAGCATATTTCGGCAATGTTTTAA-TG-G--TATTT-TT---TTGATTT-TTGAGGCT-AAT-AAACTATTTATTTTCATTGCTTATGACCTTT---ATAAGCAAATCGATATGAA
gi|1 : ATGACATTCCACAGAGAT--TT--GAACGGTTCATATA---T--------T---TG--------AACCATGTC---ATATTCGTATTATCAAA------TGCATT--CTT----TATTTCTTCAACATATTCAGAGAACA-CCTTTTACACCCTTAAACTTCCTTTGATATACA-CCCTTAAACTGGCATAACTACACGCTT-TTCACAATACTGATACACTA-T--C------TACTGGTCAATCACGACCTAC-ATT-------AATAA-A-AT----AA---TAAA--TT--G---ATA-AGGTA-AAAAAGAA-AATGCGAAAC---T-TTT---TC-------TTTCAACCATTTCGCTC--TTT-C--TTTCATTCCAAACTCATTCGTATGATCACAATGTATTACACGG-----TAAATTCAGA----T-G-GATTACGACACGT----CAGGTTT-----CAGTTATTATAGCCCCCTACT-GATTA--ACAATTTATAT------ATTTGATATGTTTAAACCAGTA---AC------GACAC-TGC-----------A-----------T---------------AC-G---A-TA-AT-A----T--A-TA----AAAAA---A------AA---------------CATGC------A----T-TGC---ACTGATCTCGCTATTTAGAAGAATTCGATCCAGG--CAT---A---T---G---AG----A-----T--------------------T------T-------C--CACCATGATCGCTG-CAAGATCATGAAT--TAATGCCACACGTTAAACA-----AATC-----CCTCC---A---------A--------T------A--T------C-ATGGTTCCAT-------CATACATGGTTGCAACCCTCGTTTCAGTTAG---ATA------GTTTAATTTA-CCGAGATATCTTAATCGTAATAACCT--TTACAACAAGTTGCAGTG-TGTCTACATTGACGTCATAGGTGAGGGAG----ATAAGCGA-TGTAAAC--TTTTAATTTAGA-CGTTAGA-GCTCTTAA-GTTTTATCTGCAT-----TTACTAGT-------ACTTCAAGCA-GGAATACACCTTC----TAGCATATTTTGGCAATGTTTTAA-TA-G--TATTT-TT---TTGATTT-TAGAGATT-AAT-AAACTATTTATTTTCATTGCGTATGAACTTTACCATAAACAAATCGATATGAA
gi|10 : tTTCCCACGGATATGTTT--AAAGGATTCACACA---TGCATATATT---TGTG------CATCATGTC---ATATTCTTTATATCGTA------TATATTT-CTA----TATTTCTTTAACATGCTTAGAGAACA-C-------------A-------TTTCATACACA-CA-T--AACTGACATAATTACACGCTT-ACTACAATGATGTTAAA-TACT--C------TACTGCT----------CTAC-GTTGGAA---AATAG-T-A-----AA---TAAA--TACAA---ATA-AA
gi|11 : aaatgggaataaaggtcaatgcaatgcataacatgtcatagttgacaacctgtacttggtgcaaaaatctcactagttagatgcatgaacgactgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGACTTCC---GGATAT--TTTTAAAGGATTCACACA---TGCATATATT---TGTG------CATCATGTC---CTACTCTTGATATCGTA------TATATTT-CTA----TATTTCTTTAATATGCTTAGAGAACA-C-------------A-------TTTGATGCACA-CA-T--AACTGACATAATTACACGCTT-ACCACAATGATGTTAAATAA-T--C------TACTGCT----------CTAC-GTT-------GA-AA-A-ATAGTGAA---TAAA--T-------ACA-AATTA-Ac
gi|12 : taaatgggaataaaggtcaatgcaatgcataacatgtcatagttgacaacctgtacttggtgcaaaaatcatctcactagttagatgcatgaacgactgtataaaactactttgtaatgaaagaaacttacccacacaacatcagtagtgagagataagtgacctcggtgcagcaacatgaaccactttaccacggcacagagGACTTCCCACGGATAT--TTTTAAAGGATTCACACA---TGCATATATT---TGTG------CAACATATC---CTATTCTTAATATCGTA------TATATTT-CTA----TATTTCTTTAACATGCTTAGAGAACA-C-------------A-------TTTGATACACA-CA-T--AACTGACATAATTACACGCTT-ACTACAATGATGTTAAATAA-T--C------TACTGCT----------CTAC-GTT-------GAAAA-A-T-----AG---TAAA--TG--A---ATACAAATA-AA
gi|13 : taaatgggaataaaggtcaatgcaatgcataacatgtcatagttgacaacctgtacttggtgcaaaaatctcactagttagatgcatgaatgacatcataaaactactttgtaacgaaaggtgcagcaacatgaaccactttaccacggcacagag-----------T---------------AC-A---A-TA-ATCA----TT-A-TA----ATATA---T------TTT--------------CATGC------A----T-TGT---ACCGATCTCACT-----------------CCAGG--CAG---A---T---GTTGAG----G-----T--------------------TCGTTTTT-------C--CATCATACTCGCTG-CAAAATCA-AAA-----ATGCTGCACGTTACACGATATGAATCCCCCCACTCCCCCGCACCCATCCA--------CCTC---A-TC------C-ATTGTTCCAA-------CATATATGGTTGCGATCCTCATTT-AATTAA---ATACTAGTAGTTTAATATC-CC-CGACATCTTAAACGTAATAACCAAATTACAACAAATTGCAGAA-AGCATACCTTGATGTCACAGTTTAGGGTA----ATAAGCGA-GGCAAA
gi|14 : cagacagatgttgcactgagcctagatacgaacaagacAATTATAAACCCCATCT-TATGA--ATAATATATTT------ACTGAATA-GTTTTAACTAGTA---AT------TACAC-TAC-----------AGCATGAAATACT---------------AC-A---AACA-AA-A----T--A-TA----CCATA---A------TTATTGTAATACATTATTATTC------A----T-TGC---ACAGATCTTACTATGCAGAAAAAGTTGTTCAAGG--CAG---ATGTT---G---AGTGTCG-----T--------------------T------TTTTTTTAC--CGTCATAATTGTTG-TCAGATCATAA------ATGCTGCATGTTACATG-----ATTC-----AGCTT---G---------ATCCCTGTCC------A-TT------C-ATTGTTCAAA-------CATA
gi|15 : GACTTCCCACAGAGAT--TT--GAAGGATTCATACA---T--------attacctgtgtcttgtttcaacta
gi|16 : ctcccactgcccaaactcctacgcataaggtaataaaagacggaccacagaggttttcattcatgaaaataaaggtcatatacccagtacttttcgatgagaaaaagttcactagtcagatgcatgaatatgactgcgtaaaacttcagtaattttgtacagaatggaactcaaactcacaacatcaggctgtagcagggaccactaggccacggcacacag---AC------TACTCGTAT-----------A-----------T---------------AC-G---T-TA-ATCA----TTTA-TA----ATATT----------TT---------------CATG-------A----TGTGC---ACCGATCACGCCATTCGGAAGAATTCGTTCCAGA--CAG---A---T---G---gcatacatttg
gi|16 : agtaacaattattctgtactgcagatggacggtataaattgaccagtaacaacaataccgtactgtgcagagacacatatatag-----------T---------------AC-A---A-TA-ATCA----TT-A-TA----ATATA---T------TTT--------------CATGC------A----T-TGT---ACCGATCTCACTttgcactgagcctagatacgaacaagactacaataatcattataatatattttcatgcattgtaccgatctcactccagg
gi|17 : agtaacaattattctgtactgcagatggacggtataaattgaccagtaacaacaataccgtactgtgcagagacacatatatagactactcgtatatacgttaatcatttataatattttcatgatgtgcaccgatcacgccattcggaagaattcgttccagacagatgttgcactgagcctagatacgaacaagacA------TA-ATTT-CTGTTTCCAGTTCTTTAACATGTTCAGATAACA-C-------------G-------TTTGATACACA-CA---GAAATGACATAAGTGCAC------TCACAACACTGATCAACTA-T--C------TACTTGTCAATCTCAACCTAA-GTT-------GATAAGA-A-----AA---TACA--C-------ATT-AAGTA-AAACA-AA-TATGCGAAACACAT-TTT---ccagg
gi|18 : atggacattcacataaatagcggctagtgatttttttctgtttaatggtatcaaagaaCAGTG-CGCCGACATCGACGTTACATTTAAGGGAA----ATAAGCCA-GGTAAAC--ATT---T---------------CT-TTAA-GATT-----GCAAATAGATTATTAGT-------TCTTCGAACA-GGAATAAAACTTCGGATTAGCATTTTTAAGAAATGTTTTAT-TG-G--TATCT-TT---TAATTTT-TTGAGCCG-AAT-AAACTATTCATTTTTATTGCTTATGGCCTT-----TAAGCAAAT---TATAAAagcaa
gi|19 : ttACAAA---CAGCGTCG--TA-ATTGATGTCACAGTCAAGGAAG----ATAAGCGA-GACTAAC--ATT---T---G---GCCAGGTG---TTAC-ACTTTACCGACAA-----TAATAAGT-------ACTTCTGACA-GGAACAAACCATCGGATTGGCATATTTCGGCAATGTTTTGA-TA-A--TA-TA-TT---TCGATTT-t
gi|2 : ccgagatctaaattatGACTTTCCACAGAGAT--TT--GAAAGATTCATACA---TGCAATCATT---TGTG------AATTATGTC---CTGTTCTTATAATAATA------TATATTTTCTA----AATTTATTTAACAC-------------C------------T---------TTGATACAAA-CG---GGACTGACATAATTGCACGTTT-ATCACAATACGGGTGAACTA-TAACTATATATATTGGCCAATCCCAACTAAC-GTT-------AGTA-------------------------A---ATA-AAGCA-GGACC-AATGATGCG--AT---TGTTT---TCTTTATTATTTTATTCATTTCATTCA-TTTGCCATTCCATTCTAAACTCATT-ATGTGAT-GAAGTGTATTACACAGCCAAAAAAAATCACA-TTTC-G-GACTACCACTCGT----CCTATTTGATGCCAGTGACTATgtttccattaataatgacct
gi|2 : gcacggggT------ATTTGATG--------CCAGTG---AC------TATTC-TGC-----------ACCG--------T---------------GC-A---G-AG-AC-G----C--A-AA----ACATATGTG------TT-----------------TGT------A----T--GC---ACCGAT--------------GAATTCGTTCCAG----AA---G---T---G---TC----G-----T--------------------T------T-------AAGCATTATAATAACTGACAA-ATCGTAAATGCT-ACGCTG------AAACG-----AACC-----AGTTT---G---------A--------CTCTTTCA-TT------CCATGGTTCCTA-------TATATAAGATTGCAACCCTCATTTAAATTAA---ATA--------------------------TTTGATCATAATAACCT--TTTAAACCATTTGCAGTG-TGCCGACATTGACAT-------------G----ATATGCGT-GATAACC--TTT----------CGCCAGGTGC---TAA-GTTTTACCTGTAA-----TTACCAGT-------TCTTTGAACA-GTAATtctgcaccgtgcagagacgcaaaacatatgtgtttgtatgcaccgatgaattcgttccagaagtgtcgtttaagcattataataactgacaaatcgtaaatgctacgctgaaacgaaccagtttgactctttcattccatggttcctatatataagattgcaaccctcatttaaattaaatatttgatcataataaccttttaaaccatttgcagtgtgccgacattgacatgatatgcgtgataacctttcgccaggtgctaagttttacctgtaattaccagttctttgaacagtaattattttagggctgaattaactatttattttcatttcttatgaccttta
gi|2 : gcacgggggactttccacagagatttgaaagattcatacatgcaatcatttgtgaattatgtcctgttcttataataatatatattttctaaatttatttaacacctttgatacaaacgggactgacataattgcacgtttatcacaatacgggtgaactataactatatatattggccaatcccaactaacgttagtaaataaagcaggaccaatgatgcgattgttttctttattattttattcatttcattcatttgccattccattctaaactcattatgtgatgaagtgtattacacagccaaaaaaaatcacatttcggactaccactcgtccTT-TTAGGGCTGAAT-TAACTATTTATTTTCATTTCTTATGACCTTT---Atattttagggctgaattaactatttattttcatttcttatgaccttta
gi|20 : gcacgggggactttccacagagatttgaaagattcatacatgcaatcatttgtgaattatgtcctgttcttataataatatatattttctaaatttatttaacacctttgatacaaacgggactgacataattgcacgtttatcacaatacgggtgaactataactatatatattggccaatcccaactaacgttagtaaataaagcaggaccaatgatgcgattgttttctttattattttattcatttcattcatttgccattccattctaaactcattatgtgatgaagtgtattacacagccaaaaaaaatcacatttcggactaccactcgtcctatttgatgccagtgactattctgcaccgtgcagagacgcaaaacatatgtgtttgtatgcaccgatgaattcgttccagaagtgtcgtttaagcattataataactgacaaatcgtaaatgctacgctgaaacgaaccagtttgactctttcattccatggttcctatatataagattgcaaccctcatttaaattaaatatttgatcataataaccttttaaaccatttgcagtgtgccgacattgacatgatatgcgtgataacctttcgccaggtgctaagttttacctgtaattaccagttctttgaacagtaattaTCCCACAGAGAT--TT--AAACTATTCGTACACGCT--------TACATTTT------AATCATTCT---ATATTCTTATTATCTTA------TACATTT-ATA----CATTTCTTTAACATGCTCAGA-------------------TC-------TTTAATGCGTA-CCTTTGAACTGACAT-ATTG
gi|20 : TTTAA-TGCG--TACCT-TTGAACTGACATATTGATG---AAT-ACACTTTTTATTTCCATTGC-TATGACCTTT---A-AAGTAAATatgaatacactttttatttccattgctatgacctttaaagtaaatacagtggacaaatatttc
gi|21 : tcccacagagatttaaactattcgtacacgcttacattttaatcattctatattcttattatcttatacatttatacatttctttaacatgctcagatcGACTTCCT-CAGAGAT--TT--GGACGATTCATACA---T--------acagtggacaaatatttc
gi|21 : acagagA------TACATGC-ATA----CATTTCTTTAACATGCTCAGAGAACACC------------TA---------CGAACCACA-CGTTTGGACTGATATAA-TGTACACTT-ATCACGATGCTG-------A-T--C------TACTGGCCAATGACGTCCTACAAAT-------AATAA-A-A-----AAAGTTAAA--TACAA---ATG-AAATATAAATA-AA-GATgcatacatttctttaacatgctcagagaacacctacgaaccacacgtttggactgatataatgtacacttatcacgatgctgatctactggccaatgacgtcctacaaataataaaaaaagttaaatacaaatgaaatataaataaagat
gi|22 : acagaggacttcctcagagatttggacgattcGACTTTCCACGGGGAT--TC--GAAGGATTCATACA---T--------
gi|23 : gagaagaaactctaagtcagatacatgaacatgaccaagtataactgccattaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTGACGTCA-AATTAAGGGAGGGATATAATTGA-GACGAAC--TTC---T------CGCCGGG-G-T-TTAC-AATTTACCTGCAA-----ATA--GGA-------AGTTAG-ACA-GGAATAACCCGTCGGAATAGCATTTGTCAGCAATGTTTAAA-TG-G--TA-TA-TT---TTGATTC-ATAGGACT---T-AAAC-ATTTATgcagacatctttaa
gi|24 : TT-GCGATTACGACACGT----CAGGTTT-----CAGTTATTATAACCCACAACT-GATGA--TAAA--TATTT------GATTGATA-GTTTTAACCAACATCCACACAG--TACAT-TGCGGTG-------A-----------C---------------ACGG---A-CA-AA-A----T--A-TA----CGATA---A------
gi|25 : GATTTCCCACAGAGAT--TT--GAAAGATTCATACA---T--------gcatactatatttcca
gi|26 : catagagGGAA----ACAAGCGA-TGCATAC--TTT---TTTAAGACGTTAAA-ACT-CTAAAGTTTTACCTGCAT-----TTACTAATACTTCGAACTTCGAACA-GGAATAAACCTTgcatacacagcctttgattttttgctctgattaaatacatgtaatagttattcttgtgattttattt
gi|27 : gat-GTTTTAATTGCAA-----TTGCTAGT-------ACTTCGGACATGAAACAGTCCGTCGGATAAGCATCTTTTGGCAATGTTTTAA-TG-T--TCTCT-TT---T
gi|28 : AA-----TGACTAGT-------GCTTCGAACA-GGAATTAATCTTCGGAGTAGCATA---CGACACTG--TTAATTG-G--TA-TT-TG---TTGATTT-Tagg
gi|29 : acaTTTCAGCAATGTTTTAA-TG-G--TA-TA-TT---TTGATTT-TTAAGGCTGAAT-GAACAATTCATTTTCATTGCTTA
gi|3 : cttGATTTCCCATAGAGAT--TT--GGAGGAGTCATATA---T-------------GC-------AATCGTGTCCCTATATTCTTA---TCTTA------TATATTT-CTA----CATTTCTTTAACATGCTCAGAGAACA--------------TA-------TTTGACAC-CA-AA-ATGA-CTAATATAATTTCACAATT-ATAACAATACTGATAAACTA-T--A------TACTGGTCTATCAAAACCTTC-GTT-------AATAA-A-A-----AAAA-TAAA--C---ACAAATA-AAGGA-AAATA-AT-CATGCGACA----T-TTT---TC-------ATGTATTCATTTCACTC--TAT-T--TTTTATTCCAAATTCATT-ATATGATCCAAATATGTTACACAA-----GAACTTCATA-ATATAG-GATTACGACGCGT----CATGATT-----CAGTAATTGTAACCCCGTACT-GATGA--ACACTATGTTT------ATTTGTTAT-TTTT-ACCAGTA---AG------CACGC-TGC-----------A-----------TCATGCAGAGACACTAAC-G---A--A-AT-ATATTT--A-TA----ATATA---ATATTTTTT---------------CATGC------A----T-TGC---ACCGATCTCGCTATTCAAAAGAATTCGTTCCAGG--C---------T---G---AA----C-----A--------------------T------A-------C--TATTGCGATATCTG-CCAGAGCATAG------ATGCTATACGATACACG-----AATC-----AGTGT---G---------ACCCTTCT-C------A-TTC-----C-ATGGTTCCGT-------CATTTAAGGTTGCAACTCCCATTTCTATTAA---ATA------GTTTCATTTA-CCTTGATATTTTAATTGTAATAACCT--TAACAACAAAT
gi|30 : agTGCAA-----TTACTCGT-------GTTTTGAATA-GGAATAAACCTTCGGATTAGCACATTTgactagt
gi|4 : tcttttagagtgtaaaacttACGACTTCCTACAGAGAT--TT--GAACGATTCATATA---T--------G---CATACAGCTAAATCATGCC---ATATTCTTAATATCATA------TGCATTT-CTA----CATTTCTTTAACATGCTCAGAGAATA-C------------C--------TTTGATAGACACCC-TTGAACTGACATAACTACACGCTT-ATTACAATACTGATACAATA-A--A------AAATGGCCAACCACGACATAC-ATC-------ATTAA-A-G-----AA---TAAA--TACAA---ATA-CAGTA-AAACA-AA-GATGCAAAAC---T-TTT---CA-------TTTAAT-CATTTTGCCCTTTTT-T--TTTCATTCCAAA---AATCATATGATCAAAATGTATTACACAG-----TATATTCAGATCTTT-G-GA-----ATACGT----CAGGTTT-----GAGTGATTATAA-ACCCTGCT-GATGA--ACACTTTATTTCAAATCATTTGATATGTTTTAAACCGTA---ACTAAATGTACGC-TGC-----------A-----------T----------------C-GTGCA-GAGAC-A----T--A-TA----CGATA---A------TT----------------ATAT------AATATT-TGT--------TCTCGCTATTCAGAAGAATTCGTTCCAGG--CAG---A---T---G---GG----
gi|5 : gTCCCACAACCAT--TT--GAACGATTCATACA---TACATAGA-T---T-TG------AATCATGCC---ATATTCTTAGCATT---------TGCATTT-CTC----AATTTCTTAAACATACTCAGAGAACA-C------------C--------TTTGGTACACA-CCTTTGAACTGACGTAACTACACGCTT-ATTACAATACTGATGCACTA-T--C------TACTAGTCATTCACGACCTAC-AGT-------AATAC-A----------------------A---ATA-AGATA-AAACA-AA-AATGCAAAAC-----TTT---TC-------TTGCAACCATTTCGCTC--TTT-C--TTTCATACCAAACTCATT-ATATGATAAAAATATATTAAACAG-----TAAATTAACATCTTT-T-GATCACGACACGT----CAGGTTT-----CAGTAAATATAACCCCGTACTGGAGAA--ACTATTTATTT------ATTTGATATGTTTTAACCAGTA---AC------TTCAC-TGC-----------A-----------A---------------AC-G---A-TA-AT-A----T--ATTAGGCTATATA---ATATGT-TT---------------CATGC------A----T-TGC---GCAGATCTCGGTATTTAAAAGAATTTGTTCCCTG--CAG---A---T---G---AG----A-----T--------------------T------T-------C--CACCATtata
gi|6 : TTT-G-GATTACGACACGT----CAGGTTT-----CATTAATCATAACCTGCTACT-GTTGA--ACAAATCATGT------ACGTGTTATGATTTA-CCAGTA---AC------TTCAC-TTCCCCGTGAAGAGA-----------C---------------AC-G---A-AAGAA-A----T--A-TA----CTATA---A------T----------------CATATTCAATAA----T-TTCTTTACCGATCTCGCTATTCAGAAAATCTCGTTCCGTG--CAT---A---TATTG---AGTGTCG-----T--------------------T------TTT-----C--CATAATAATTACTGACAA-ATAATAAAT--TTATGCTACACGTTAAACA-----AATC-----AGTCT---G---------A--------CC-----A-TG------G-ATGGTTCCAA-------CATGTATGAT-GCAACCCCTATTTAAATTAA---ATA------GTTTA--------------TTTTAATCGTAATGACCT--TTACACCAAATTGCAGCG-CGTCGGCATTGACGTCACATTTAAGAGAG----ATTAGCAATGTCAAAT--TTT---
gi|6 : tcattTTCGAACA-GTAATAAACCTTCGGATTAGCATATTTCGGAAATA---TAA-TA-AACTATCTATT---TTCATTG-TTcgaacagtaataaaccttcggattagcatatttcggaaatataataaactatctattttcattgtttatgacct
gi|6 : tcatttttggattacgacacgtcaggtttcattaatcataacctgctactgttgaacaaatcatgtacgtgttatgatttaccagtaacttcacttccccgtgaagagacacgaaagaaatatactataatcatattcaataatttctttaccgatctcgctattcagaaaatctcgttccgtgcatatattgagtgtcgtttttccataataattactgacaaataataaatttatgctacacgttaaacaaatcagtctgaccatggatggttccaacatgtatgatgcaacccctatttaaattaaatagtttattttaatcgtaatgacctttacaccaaattgcagcgcgtcggcattgacgtcacatttaagagagattagcaatgtcaaattT-AAT-AAACTATCTATTTTCATTGTTTATGACCTtatgacct
gi|7 : tcatttttggattacgacacgtcaggtttcattaatcataacctgctactgttgaacaaatcatgtacgtgttatgatttaccagtaacttcacttccccgtgaagagacacgaaagaaatatactataatcatattcaataatttctttaccgatctcgctattcagaaaatctcgttccgtgcatatattgagtgtcgtttttccataataattactgacaaataataaatttatgctacacgttaaacaaatcagtctgaccatggatggttccaacatgtatgatgcaacccctatttaaattaaatagtttattttaatcgtaatgacctttacaccaaattgcagcgcgtcggcattgacgtcacatttaagagagattagcaatgtcaaattttcgaacagtaataaaccttcggattagcatatttcggaaata-----------A-----------T---------------AG-G---A-TA-ATCA----T--A-CA----TGATAGT-A------TT---------------T---C------A----T-TTC---ACCTATATCTCTATTAAGAAGAGCGTATTCCGGGTTCAATATA---T---G---GA----G-----TGTCATTATCGAATGTCCTTTT------T-------C--GATCATAATCGCTG-CCAGATCACAAAT--TCATGCTGCGAGTTAAAGG-----AATC-----AGTCT---G---------A--------T------AGTTTTTTTAC-ATGGTTCCAAAAGGGTGCA-ATGTGGTTGTAACCATCATTGTAATTAAATTATG------GTTTAATTTATCC-CGATATCT--------------------CAACAAAGTCCAGCA-CGCCCACATTTAGGTCACATTTAAGAAAG----ATAAGCGA-GGTAAACATTTT---TTTAA---GATAG-------TAA------AACTGAAA-----GTACTAGT-------TCTTCGAACA-GGAATAAACTTTCGGTTTAGCATATTTAGAAAATTATTTAA-TG-A--TATTT-TT---TT-AC-------GGCT-GATAAAACTATTTATTTTCATTGCTCATGAC
gi|8 : aaataattTTCCCACGGAGAT--TT---AATGA---ATATG---T--------T---TGTG------CATCATGTC---CTATTATTTATATCATAAAATTATATATTT-CTA----CATTTCCTTAACATGCTCAGAGAACA--------------TA-------TTTGATACACA-TA-T--AACTGACATA--------TTT-ATTAAAATGCTGTGAAATTG-T--C------TACCGATCAATCACAACCTAC-GTTTAAAAAGAACAA-A-A-----AA---TAAAACC---A---ATG-AAATA-TAACC-AA-GATGCGAAAC---A-TTT---t
gi|9 : aaattggaatgaaggccaatgtaatgcataacaggtcatatttgacaacctgtacttttggtgtaaaacaactcactagtcatatgcatgagcaactgcgtagaactacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATGCTCATATAACA-C------------T---------TTGATACACA-CA-A-AAACTGACATAATTGCACGCTTTAT-ACAATAC-AATAACCTA------------------CAACAATGA-------------------AA-ATA-----AA---TAAA------A---ATA-AAGTA-AATCA-A--GATAAGAAAC---T-TTTAACTC-------TTTCATCTTTTTTATTC--TTT-C--TTTCTTTCCGA-CTCAG-CATACAATCGAAATAAATTACATGG-----GGAATTCATAGTTTT-G-GATTACGCCACGTGCGCCAATTCT-----CAGTAATCATGACCCACTACT-GATGAATACAA--GGTTT------ACCTGCTA--------------------------ATGT-TGC-----------C-----------T---------------A--G---G-TA-AT-A-----------------ATA---T------TA---------------CAT-------------T-TGA---ATCGATCTCGCTACTCAGAAGAATTCGTTTCCGG--CAG---ATGTT---G---AG----GGTTGTT--------------------T------T-------C--C----------------AGATCATAA------ATGCTGCATGTTACACG-----AATC-----AG-CC---G---------caaaccaatc
blockSeqs : GT TT G CGC GCATATATTTGTGC CCTA A G AAATTA T T TTTC CCTA C CTTTG T A T T T T TAACTATATA CAATCTCA A TAAAAAG G ATAGTGAA TACAA C T . T ACAT AAC TTTATTA T TT GCCA C C CC CCAAAA C TC A C GCGC GATGC G AT TA CAAATC TG AA TCC TAAATG A G AGCATGAAATACTACAAACAAAATATACCATAATTATTGTAATACATTATTATTCA G TTT TT ATGT ATT TTG GTGTCATTATCGAATGTCCTTTTT AG CG A A A ATGCT C ATATG CCCCC CCCGCACCCATCCACCTCATC C AAGGGTG A ATT CTAGTAGTTTAATATCCCC C AA T T C T C G GGAT T AT TTTAAGACGTTAAAACT AGT C ATAGA ACTTCGAA T T T AAC T A GAA A G A T TA .
blockSeqs : . TT G . GCATATATTTGTGC A A G . T . . CA . GTTTG T A . C T T CTC CAATCCCA . GGAA . AAAAGT TACAA . . . . TG . . T A T T C CA G T TC . . . . . . TA . TG AA . ACAG T . ATCATGCAGAGACACTAACGAAATATATTTATAATATAATATTTTTTCATGCA . . . TATA . . TGTCGTTTTTTTTTA . TG A C G ATTT C . . GATCCCTGTCCATT . . C . GTTTCATTTACCTT T . T . C G C T . . . TGGCCAGGTG GA C . T . T . CG C . . . G . T T
blockSeqs : . . G . GCATATATTTGTGC C A G . T . . CA . CTTTG T A . T T C TC CAATGACG . . . AAAAA CACAA . . . . T . . C . T C . AA T G GT . . . . . . TT . TG AA . . T . CCCGTGAAGAGACACGAAAGAAATATACTATAATCATATTCAATAA . . . ATGT . . GTTCGTTTTT . AA . A G ATTC A . . GACCCTTCTCATTC . . A . GTTTAATTTATCCC T . T . C T C G . . . CGCCAGGTGC AC C . A . T . G T . . . . . T
blockSeqs : . . G . GCAATCATTTGTGA C T A . T . . CA . AATG G G . C A C TC CTATCAAA . . . TAAA TACAA . . . . T . . C . C C . CG T C T . . . . . . TT . G AA . . A . AAACGATAATATATTAGGCTATATAATATGTTTCATGCA . . . A . . TGTCGTTTTT . AT . C G A C . . GATAGTTTTTTTA . . T . GTTTA . . T . T G C A . . . TCGCCGGGGT GT C . T . T . A T . . . . . T
blockSeqs : . . A . GCATACAGCTAA C T T . C . . CG . CTTG T G . C G C TC CAACCACG . . . AAA ACCA . . . . A . . . . C . . G G T A . . . . . . AT . G A . . G . ATCGTGCAGAGACATATACGATAATTATATAATAT . . . A . . GGTTGTTTT . TA . A G . A . . GACTCTTTCATT . . . . . . . G . C G C T . . . TTTAAGATAG AA A . A . T . G T . . . . . T
blockSeqs : . . C . ACATAGATTTGA A A T . C . . CT . AAA T G . C A A TC CATTCACG . . . TAG TGA . . . . T . . . . . . . . . T A . . G . ACCGTGCAGAGACGCAAAACATATGTGTTTGTA . . . G . . GTTT . CG . C . . A . . GACCATG . . . . . C . T . . . TCT GT A . A . A . T . . . . . . .
blockSeqs : . . C . TACATTTTA A G A . T . . TC . AT T G . A A C TA CAATCACA . . . AAA T . . . . . . . . . . . . . . . . . . A . ATACGTTAATCATTTATAATATTTTCATGA . . . A . . CATA . . . . . . C . . . . . . . . . . G . . . G . . . . . .
blockSeqs : . . G . TTGTGC A A A . C . . TA . AT C T . T A T AA CAACAATG . . . GAA C . . . . . . . . . A . ATAGGATAATCATACATGATAGTATTTCA . . . A . . ATTT . . . . G . . . G . . . .
blockSeqs : . . A . GCA C . . . C . . CC . AT C A . T T C TC . . . . AAA A . . . . G . CTAGGTAATAATATTACAT . . . A . . . T . . A . . . .
blockSeqs : . . G . . T . . CC . AG T A . T A . TC . . . . . A . . . . . . . . .
blockSeqs : . . C . . . . . TA . GG . G . . . . . . . . . . A . . .
blockSeqs : . . C . CT . AT . .
blockSeqs : . . T .
blockSeqCons : GCATATATTTGTGC********* CN********************* AT*** AAA********* TACA****** TC A***** GACCCTTCTCATT************************** TNNCCGGNGN************
originalCons : NACGACTTCCCACGGAGAT--TT--GAANGATTCATACA---T--------T---TGTG------AATCATGTC---ATATTCTTAATATCGTA------TACATTT-CTA----CATTTCTTTAACATGCTCAGAGAACA-C------------TA-------TTTGATACACA-CA-TTGAACTGACATAATTGCACGCTT-ATCACAATACTGNTAAACTA-T--C------TACTGGTCAATCACGACCTAC-GTT-------AATAA-A-A-----AA---TAAA--T---A---ATA-AAGTA-AAACA-AA-GATGCGAAAC---T-TTT---TC-------TTTCATCCATTTCGCTC--TTT-C--TTTCATTCCAAACTCATTCATATGATCGAAATGTATTACACGG-----NAAATTCANA-CTTT-G-GATTACGACACGT----CAGGTTT-----CAGTAATTATAACCCCCTACT-GATGA--ACAATTTATTT------ATTTGATATGTTTTAACCAGTA---AC------TACGC-TGC-----------A-----------T---------------AC-G---A-TA-AT-A----T--A-TA----ANATA---A------TT---------------CATGC------A----T-TGC---ACCGATCTCGCTATTCAGAAGAATTCGTTCCAGG--CAG---A---T---G---AG----G-----T--------------------T------T-------C--CATCATAATCGCTG-CAAGATCATAAAT--T-ATGCTGCACGTTANACG-----AATC-----AGTCC---G---------A--------C------A-TT------C-ATGGTTCCAA-------CATATATGGTTGCAACCCTCATTTNAATTAA---ATA------GTTTAATTTA-CC-CGATATCTTAATCGTAATAACCT--TTACAACAAATTGCAGCG-CGCCNACATTGACGTCACANTTAAGGGAG----ATAAGCGA-GGCAAAC--TTT---TTTAG--CGCCAGG-GCT-TTAA-GTTTTACCTGCAA-----TTACTAGT-------NCTTCGAACA-GGAATAAACCTTCGGATTAGCATATTTCGGCAATGTTTTAA-TG-G--TATTT-TT---TTGATTT-TTGAGGCT-AAT-AAACTATTTATTTTCATTGCTTATGACCTTT---ATAAGCAAATCGATATGAA
finalCons : NACGACTTCCCACGGAGAT--TT--GAANGATTCATACA---TGCATATATTTGTGC---------ATCATGTC---ATATTCTTAATATCGTA------TACATTT-CTA----CATTTCTTTAACATGCTCAGAGAACACN---------------------TTTGATACACA-CAT---AACTGACATAATTGCACGCTT-ATCACAATACTGNTAAACTA-T--C------TACTGGTCAATCACGACCTAC-GTT-------AATAA-AAAA---------TAAATACA------ATA-AAGTA-AAACA-AA-GATGCGAAAC---T-TTT---TC-------TTTCATCCATTTCGCTC--TTT-C--TTTCATTCCAAACTCATTCATATGATCGAAATGTATTACACGG-----NAAATTCANATCTTT-G-GATTACGACACGT----CAGGTTT-----CAGTAATTATAACCCCCTACT-GATGA--ACAATTTATTT------ATTTGATATGTTTTAACCAGTA---AC------TACGC-TGC-----------A-----------T---------------AC-G---A-TA-AT-A----T--A-TA----ANATA---A------TT---------------CATGC------A----T-TGC---ACCGATCTCGCTATTCAGAAGAATTCGTTCCAGG--CAG---A---T---G---AG----G-----T--------------------T------T-------C--CATCATAATCGCTG-CAAGATCATAAA-----ATGCTGCACGTTANACG-----AATC-----AGTCCGACCCTTCTCATT--------------------------C-ATGGTTCCAA-------CATATATGGTTGCAACCCTCATTTNAATTAA---ATA------GTTTAATTTA-CC-CGATATCTTAATCGTAATAACCT--TTACAACAAATTGCAGCG-CGCCNACATTGACGTCACANTTAAGGGAG----ATAAGCGA-GGCAAAC--TTTTNNCCGGNGN------------TTAA-GTTTTACCTGCAA-----TTACTAGT-------NCTTCGAACA-GGAATAAACCTTCGGATTAGCATATTTCGGCAATGTTTTAA-TG-G--TATTT-TT---TTGATTT-TTGAGGCT-AAT-AAACTATTTATTTTCATTGCTTATGACCTTT---ATAAGCAAATCGATATGAA
Alignments
lowQualScore : 1111111 22222222222222222222 222 111111111 11111111 2222222 1111111111 1 11111 2222222 11 1111 1 111111 1 1111 11111 11 111111 11 222222 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1111111 7777777777777777777777777777777777777777777777 1 1 222 3333333333333333333333333333 11111 1111111 111 3333333333333333333333 6666666666666666666666666 11111 11111111 1 1 222222 222
lowQualScore : 0 33 77 1 1 33 6666666 3 666 5 6 999999 2 3 7777 4 55555555555555555555 0 666 3 1 1 3 2 5 1 4 3 000000000 00000000 3 5555555 44 7777777777 1 6 3 3 4 4 4 44444 888 1111111 3 55 1111 1 5 44 0 777777 1 1 5 0000 22222 0 5 66 00 222222 33 33 777 000000 3 4 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 3 555 55 3333333 666 666 2222222222222222222222222222222222222222222222 66 33 0 3 4 1 666 1 5 7777777777777777777777777777 22222 8888888 7 111 0000000000000000000000 1 99 1 0 5 1 1 1 2 9999 4 5 4444444444444444444444444 777 0 1 00000 44444444 3 4 4 6666 2 4 777 0 4 0 0 5 0 1 555555 000
lowQualScore : . .. .. . . .. ....... . ... . . ...... . . .... . .................... . ... . . . . . . . . . ......... ........ . ....... .. .......... . . . . . . . ..... ... ....... . .. .... . . .. . ...... . . . .... ..... . . .. .. ...... .. .. ... ...... . . ...................................................................................................................... . ... .. ....... ... ... .............................................. .. .. . . . . ... . . ............................ ..... ....... . ... ...................... . .. . . . . . . . .... . . ......................... ... . . ..... ........ . . . .... . . ... . . . . . . . ...... ...
lowQualScore : 3 99 99 0 4 77 7777777 6 444 2 4 666666 2 3 1111 0 00000000000000000000 7 999 1 9 2 3 9 4 0 4 3 444444444 22222222 3 0000000 66 7777777777 1 7 3 3 4 4 4 11111 888 7777777 7 88 2222 0 0 77 7 777777 0 1 0 6666 55555 1 0 99 00 888888 99 66 000 000000 0 0 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 3 888 00 6666666 444 444 7777777777777777777777777777777777777777777777 11 66 0 0 5 2 222 0 0 9999999999999999999999999999 22222 6666666 5 777 8888888888888888888888 5 22 4 4 7 7 0 4 8 4444 4 0 4444444444444444444444444 666 1 4 00000 00000000 6 8 0 8888 1 0 000 1 0 4 0 0 4 4 111111 555
consensus : NACGACTTCCCACGGAGAT--TT--GAANGATTCATACATGCATAC-ATTTGTGC---ATCATG-TC---ATATTCTTAATATCGTA------TACATTT-CTA----CATTTCTTTAACATGCTCAGAGAACACNTT--------------------TGATACACACATTT-AA-CTGACATAATTGCACGCTT-ATCACAATACTGNTAAACTA-T--C------TACTGGTCAATCACGACCTAC-GTT-------AAT--AAAA-----AA---TAAATACAA-A-TAAAGTA-AAACA-AA-GATGCGAAAC---T-TTT---TC-------TTTCATCCATTTCGCTC--TTT-C--TTTCATTCCAAACTCATTCATATGATCGAAATGTATTACACGG-----NAAATTCANATTTTTG-GATTACGACACGT----CAGGTTT-----CAGTAATTATAACCCCCTACT-GATGA--ACAATTTATTT------ATTTGATATGTTTTAACCAGTA---AC------TACGC-TGC-----------A-----------T---------------AC-G---A-TA-AT-A----T--A-TA----ANATA---A------TT---------------CATGC------A----T-TGC---ACCGATCTCGCTATTCAGAAGAATTCGTTCCAGG--CAG---A---T---G---AG----G-----T--------------------T------T-------C--CATCATAATCGCTG-CAAGATCATAAATT-ATGCTGCACGTTANACGA-ATCAGTCT------------G-A-CCCTTC----TCAT-T-C-ATGGTTCCAA-------CATATATGGTTGCAACCCTCATTTNAATTAA---ATA------GTTTAATTTA-CC-C-GATATCTTAATCGTAATAACCT--TTACAACAAATTGCAGCG-CGCCNACATTGACGTCACANTTAAGGGAG----ATAAGCGA-GGCAAAC-TTTTNNC-----CG---GNGNT-------TAA-GTTTTACCTGCAA-----TTACTAGT-------NCTTCGAACA-GGAATAAACCTTCGGATTAGCATATTTCGGCAATGTTTTAA-TG-G--TATTT-TT---TTGATTT-TTGAGGCT-AAT-AAACTATTTATTTTCATTGCTTATGACCTTT---ATAAGCAAATCGATATGAA
Reference ( family-4477 ) : NACGACTTCCCACGGAGAT--TT--GAANGATTCATACATGCATAT-ATTTGTGC---ATCATG-TC---ATATTCTTAATATCGTA------TACATTT-CTA----CATTTCTTTAACATGCTCAGAGAACACNTT--------------------TGATACACACAT---AA-CTGACATAATTGCACGCTT-ATCACAATACTGNTAAACTA-T--C------TACTGGTCAATCACGACCTAC-GTT-------AAT--AAAA-----AA---TAAATAC-A-A-TAAAGTA-AAACA-AA-GATGCGAAAC---T-TTT---TC-------TTTCATCCATTTCGCTC--TTT-C--TTTCATTCCAAACTCATTCATATGATCGAAATGTATTACACGG-----NAAATTCANATCTTTG-GATTACGACACGT----CAGGTTT-----CAGTAATTATAACCCCCTACT-GATGA--ACAATTTATTT------ATTTGATATGTTTTAACCAGTA---AC------TACGC-TGC-----------A-----------T---------------AC-G---A-TA-AT-A----T--A-TA----ANATA---A------TT---------------CATGC------A----T-TGC---ACCGATCTCGCTATTCAGAAGAATTCGTTCCAGG--CAG---A---T---G---AG----G-----T--------------------T------T-------C--CATCATAATCGCTG-CAAGATCATAAA---ATGCTGCACGTTANACGA-ATCAGTCC------------G-A-CCCTTC----TCAT-T-C-ATGGTTCCAA-------CATATATGGTTGCAACCCTCATTTNAATTAA---ATA------GTTTAATTTA-CC-C-GATATCTTAATCGTAATAACCT--TTACAACAAATTGCAGCG-CGCCNACATTGACGTCACANTTAAGGGAG----ATAAGCGA-GGCAAAC-TTTTNNC-----CG---GNGNT-------TAA-GTTTTACCTGCAA-----TTACTAGT-------NCTTCGAACA-GGAATAAACCTTCGGATTAGCATATTTCGGCAATGTTTTAA-TG-G--TATTT-TT---TTGATTT-TTGAGGCT-AAT-AAACTATTTATTTTCATTGCTTATGACCTTT---ATAAGCAAATCGATATGAA
gi|1 : ATGACATTCCACAGAGAT--TT--GAACGGTTCATA--------T-ATTTG--A---ACCATG-TC---ATATTCGTATTATCAAA------TGCATT--CTT----TATTTCTTCAACATATTCAGAGAACACCTTTTACACCCTTAAACTTCCTTTGATATACACCCTTAAA-CTGGCATAACTACACGCTT-TTCACAATACTGATACACTA-T--C------TACTGGTCAATCACGACCTAC-ATT-------AAT--AAAAT----AA---TAAAT-T-G-A-TAAGGTA-AAAAAGAA-AATGCGAAAC---T-TTT---TC-------TTTCAACCATTTCGCTC--TTT-C--TTTCATTCCAAACTCATTCGTATGATCACAATGTATTACACGG-----TAAATTCAGAT----G-GATTACGACACGT----CAGGTTT-----CAGTTATTATAGCCCCCTACT-GATTA--ACAATTTATAT------ATTTGATATGTTTAAACCAGTA---AC------GACAC-TGC-----------A-----------T---------------AC-G---A-TA-AT-A----T--A-TA----AAAAA---A------AA---------------CATGC------A----T-TGC---ACTGATCTCGCTATTTAGAAGAATTCGATCCAGG--CAT---A---T---G---AG----A-----T--------------------T------T-------C--CACCATGATCGCTG-CAAGATCATGAATTAATGCCACACGTTAAACAA-ATC-----------------------CCTC----CAATAT-C-ATGGTTCCAT-------CATACATGGTTGCAACCCTCGTTTCAGTTAG---ATA------GTTTAATTTA-CC-GAGATATCTTAATCGTAATAACCT--TTACAACAAGTTGCAGTG-TGTCTACATTGACGTCATAGGTGAGGGAG----ATAAGCGA-TGTAAAC-TTTTAATTTAGACGTTAGAGCTCT-----TAA-GTTTTATCTGCAT-----TTACTAGT-------ACTTCAAGCA-GGAATACACCTTC----TAGCATATTTTGGCAATGTTTTAA-TA-G--TATTT-TT---TTGATTT-TAGAGATT-AAT-AAACTATTTATTTTCATTGCGTATGAACTTTACCATAAACAAATCGATATGAA
gi|10 : tTTCCCACGGATATGTTT--AAAGGATTCACACATGCATAT-ATTTGTGC---ATCATG-TC---ATATTCTTTATATCGTA------TATATTT-CTA----TATTTCTTTAACATGCTTAGAGAACACATT--------------------TCATACACACAT---AA-CTGACATAATTACACGCTT-ACTACAATGATGTTAAA-TACT--C------TACTGCT----------CTAC-GTTGGAA---AAT--AGTA-----AA---TAAATACAA-A-TAAA
gi|11 : aaatgggaataaaggtcaatgcaatgcataacatgtcatagttgacaacctgtacttggtgcaaaaatctcactagttagatgcatgaacgactgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGACTTCC---GGATAT--TTTTAAAGGATTCACACATGCATAT-ATTTGTGC---ATCATG-TC---CTACTCTTGATATCGTA------TATATTT-CTA----TATTTCTTTAATATGCTTAGAGAACACATT--------------------TGATGCACACAT---AA-CTGACATAATTACACGCTT-ACCACAATGATGTTAAATAA-T--C------TACTGCT----------CTAC-GTT-------GA---AAAATAGTGAA---TAAATAC-A-A-c
gi|12 : taaatgggaataaaggtcaatgcaatgcataacatgtcatagttgacaacctgtacttggtgcaaaaatcatctcactagttagatgcatgaacgactgtataaaactactttgtaatgaaagaaacttacccacacaacatcagtagtgagagataagtgacctcggtgcagcaacatgaaccactttaccacggcacagagGACTTCCCACGGATAT--TTTTAAAGGATTCACACATGCATAT-ATTTGTGC---AACATA-TC---CTATTCTTAATATCGTA------TATATTT-CTA----TATTTCTTTAACATGCTTAGAGAACACATT--------------------TGATACACACAT---AA-CTGACATAATTACACGCTT-ACTACAATGATGTTAAATAA-T--C------TACTGCT----------CTAC-GTTGAAA---AAT--AGTA-----AA---TGAATACAA-A-TAAAattaa
gi|13 : taaatgggaataaaggtcaatgcaatgcataacatgtcatagttgacaacctgtacttggtgcaaaaatctcactagttagatgcatgaatgacatcataaaactactttgtaacgaaaggtgcagcaacatgaaccactttaccacggcacagag-----------T---------------AC-A---A-TA-ATCA----TT-A-TA----ATATA---T------TTT--------------CATGC------A----T-TGT---ACCGATCTCACT-----------------CCAGG--CAG---A---T---GTTGAG----G-----T--------------------TCGTTTTT-------C--CATCATACTCGCTG-CAAAATCA-AAA---ATGCTGCACGTTACACGATATGAATCCCCCCACTCCCCCGCA-CCCATCCACCTCAT-C-C-ATTGTTCCAA-------CATATATGGTTGCGATCCTCATTT-AATTAA---ATACTAGTAGTTTAATATC-CC-C-GACATCTTAAACGTAATAACCAAATTACAACAAATTGCAGAA-AGCATACCTTGATGTCACAGTTTAGGGTA----ATAAGCGA-GGCAAA
gi|14 : cagacagatgttgcactgagcctagatacgaacaagacAATTATAAACCCCATCT-TATGA--ATAATATATTT------ACTGAATA-GTTTTAACTAGTA---AT------TACAC-TAC-----------AGCATGAAATACT---------------AC-A---AACA-AA-A----T--A-TA----CCATA---A------TTATTGTAATACATTATTATTC------A----T-TGC---ACAGATCTTACTATGCAGAAAAAGTTGTTCAAGG--CAG---ATGTT---G---AGTGTCG-----T--------------------T------TTTTTTTAC--CGTCATAATTGTTG-TCAGATCAT-AA---ATGCTGCATGTTACATGA-TTCAGCTT------------G-ATCCCTGT----CCAT-T-C-ATTGTTCAAA-------CATA
gi|15 : GACTTCCCACAGAGAT--TT--GAAGGATTCATACATGCATAC-ATTTGattacctgtgtcttgtttcaacta
gi|16 : ctcccactgcccaaactcctacgcataaggtaataaaagacggaccacagaggttttcattcatgaaaataaaggtcatatacccagtacttttcgatgagaaaaagttcactagtcagatgcatgaatatgactgcgtaaaacttcagtaattttgtacagaatggaactcaaactcacaacatcaggctgtagcagggaccactaggccacggcacacag---AC------TACTCGTAT-----------A-----------T---------------AC-G---T-TA-ATCA----TTTA-TA----ATATT----------TT---------------CATG-------A----TGTGC---ACCGATCACGCCATTCGGAAGAATTCGTTCCAGA--CAG---A---T---G---
gi|16 : agtaacaattattctgtactgcagatggacggtataaattgaccagtaacaacaataccgtactgtgcagagacacatatatag-----------T---------------AC-A---A-TA-ATCA----TT-A-TA----ATATA---T------TTT--------------CATGC------A----T-TGT---ACCGATCTCACTttgcactgagcctagatacgaacaagactacaataatcattataatatattttcatgcattgtaccgatctcactccagg
gi|17 : agtaacaattattctgtactgcagatggacggtataaattgaccagtaacaacaataccgtactgtgcagagacacatatatagactactcgtatatacgttaatcatttataatattttcatgatgtgcaccgatcacgccattcggaagaattcgttccagacagatgttgcactgagcctagatacgaacaagacA------TA-ATTT-CTGTTTCCAGTTCTTTAACATGTTCAGATAACACGTT--------------------TGATACACACAG---AA-ATGACATAAGTGCAC------TCACAACACTGATCAACTA-T--C------TACTTGTCAATCTCAACCTAA-GTT-------GAT--AAGA-----------AAATAC-ACA-TTAAGTA-AAACA-AA-TATGCGAAACACAT-TTT---ccagg
gi|18 : atggacattcacataaatagcggctagtgatttttttctgtttaatggtatcaaagaaCAGTG-CGCCGACATCGACGTTACATTTAAGGGAA----ATAAGCCA-GGTAAAC-ATTTCT---------------T-------TAA-GATT-----GCAAATAGATTATTAGT-------TCTTCGAACA-GGAATAAAACTTCGGATTAGCATTTTTAAGAAATGTTTTAT-TG-G--TATCT-TT---TAATTTT-TTGAGCCG-AAT-AAACTATTCATTTTTATTGCTTATGGCCTT-----TAAGCAAAT---TATAAAagcaa
gi|19 : ttACAAA---CAGCGTCG--TA-ATTGATGTCACAGTCAAGGAAG----ATAAGCGA-GACTAAC-ATTTGGC-----CA---GGTGT-------TAC-ACTTTACCGACAA-----TAATAAGT-------ACTTCTGACA-GGAACAAACCATCGGATTGGCATATTTCGGCAATGTTTTGA-TA-A--TA-TA-TT---TCGATTT-t
gi|2 : ccgagatctaaattatGACTTTCCACAGAGAT--TT--GAAAGATTCATACATGCA-ATCATTTGTGA---ATTATG-TC---CTGTTCTTATAATAATA------TATATTTTCTA----AATTTATTTAACA-------------CCTT--------------------TGATACAAACGG---GA-CTGACATAATTGCACGTTT-ATCACAATACGGGTGAACTA-TAACTATATATATTGGCCAATCCCAACTAAC-GTT-------AGT--A---------------------A-A-TAAAGCA-GGACC-AATGATGCG--AT---TGTTT---TCTTTATTATTTTATTCATTTCATTCA-TTTGCCATTCCATTCTAAACTCATT-ATGTGAT-GAAGTGTATTACACAGCCAAAAAAAATCACAT-TTCG-GACTACCACTCGT----CCTATTTGATGCCAGTGACTATgtttccattaataatgacct
gi|2 : gcacggggT------ATTTGATG--------CCAGTG---AC------TATTC-TGC-----------ACCG--------T---------------GC-A---G-AG-AC-G----C--A-AA----ACATATGTG------TT-----------------TGT------A----T--GC---ACCGAT--------------GAATTCGTTCCAG----AA---G---T---G---TC----G-----T--------------------T------T-------AAGCATTATAATAACTGACAA-ATCGTAAA----TGCTACGC-TGAAACGA-ACCAGTTT------------G-A-CTCTT-----TCAT-T-CCATGGTTCCTA-------TATATAAGATTGCAACCCTCATTTAAATTAA---ATA---------------------------TTTGATCATAATAACCT--TTTAAACCATTTGCAGTG-TGCCGACATTGACAT-------------G----ATATGCGT-GATAACC-TTTCGCC-----AG---GTGC--------TAA-GTTTTACCTGTAA-----TTACCAGT-------TCTTTGAACA-GTAATtctgcaccgtgcagagacgcaaaacatatgtgtttgtatgcaccgatgaattcgttccagaagtgtcgtttaagcattataataactgacaaatcgtaaatgctacgctgaaacgaaccagtttgactctttcattccatggttcctatatataagattgcaaccctcatttaaattaaatatttgatcataataaccttttaaaccatttgcagtgtgccgacattgacatgatatgcgtgataacctttcgccaggtgctaagttttacctgtaattaccagttctttgaacagtaattattttagggctgaattaactatttattttcatttcttatgaccttta
gi|2 : gcacgggggactttccacagagatttgaaagattcatacatgcaatcatttgtgaattatgtcctgttcttataataatatatattttctaaatttatttaacacctttgatacaaacgggactgacataattgcacgtttatcacaatacgggtgaactataactatatatattggccaatcccaactaacgttagtaaataaagcaggaccaatgatgcgattgttttctttattattttattcatttcattcatttgccattccattctaaactcattatgtgatgaagtgtattacacagccaaaaaaaatcacatttcggactaccactcgtccTT-TTAGGGCTGAAT-TAACTATTTATTTTCATTTCTTATGACCTTT---Atattttagggctgaattaactatttattttcatttcttatgaccttta
gi|20 : gcacgggggactttccacagagatttgaaagattcatacatgcaatcatttgtgaattatgtcctgttcttataataatatatattttctaaatttatttaacacctttgatacaaacgggactgacataattgcacgtttatcacaatacgggtgaactataactatatatattggccaatcccaactaacgttagtaaataaagcaggaccaatgatgcgattgttttctttattattttattcatttcattcatttgccattccattctaaactcattatgtgatgaagtgtattacacagccaaaaaaaatcacatttcggactaccactcgtcctatttgatgccagtgactattctgcaccgtgcagagacgcaaaacatatgtgtttgtatgcaccgatgaattcgttccagaagtgtcgtttaagcattataataactgacaaatcgtaaatgctacgctgaaacgaaccagtttgactctttcattccatggttcctatatataagattgcaaccctcatttaaattaaatatttgatcataataaccttttaaaccatttgcagtgtgccgacattgacatgatatgcgtgataacctttcgccaggtgctaagttttacctgtaattaccagttctttgaacagtaattaTCCCACAGAGAT--TT--AAACTATTCGTACACGCTTAC-ATTT-TA----ATCATT-CT---ATATTCTTATTATCTTA------TACATTT-ATA----CATTTCTTTAACATGCTCAG-----ATCTT--------------------TAATGCGTACCTTTGAA-CTGACAT-ATTG
gi|20 : TTTAA-TGCG--TACCT-TTGAACTGACATATTGATG---AAT-ACACTTTTTATTTCCATTGC-TATGACCTTT---A-AAGTAAATatgaatacactttttatttccattgctatgacctttaaagtaaatacagtggacaaatatttc
gi|21 : tcccacagagatttaaactattcgtacacgcttacattttaatcattctatattcttattatcttatacatttatacatttctttaacatgctcagatcGACTTCCT-CAGAGAT--TT--GGACGATTCATACATGCATAC-ATTTCTTT---AACATGCTC---Aacagtggacaaatatttc
gi|21 : acagagA------TACATGC-ATA----CATTTCTTTAACATGCTCAGAGAACACCTA--------------------CGAACCACACGTTTGGA-CTGATATAA-TGTACACTT-ATCACGATGCTG-------A-T--C------TACTGGCCAATGACGTCCTACAAAT-------AAT--AAAA-----AAAGTTAAATACAA-A-TGAAATATAAATA-AA-GATgagaacacctacgaaccacacgtttggactgatataatgtacacttatcacgatgctgatctactggccaatgacgtcctacaaataataaaaaaagttaaatacaaatgaaatataaataaagat
gi|22 : acagaggacttcctcagagatttggacgattcGACTTTCCACGGGGAT--TC--GAAGGATTCATACATGCAGAC-ATCT
gi|23 : gagaagaaactctaagtcagatacatgaacatgaccaagtataactgccattaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTGACGTCA-AATTAAGGGAGGGATATAATTGA-GACGAAC-TTCTCGC-----CG---GGGTT-------TAC-AATTTACCTGCAA-----ATA--GGA-------AGTTAG-ACA-GGAATAACCCGTCGGAATAGCATTTGTCAGCAATGTTTAAA-TG-G--TA-TA-TT---TTGATTC-ATAGGACT---T-AAAC-ATTTATttaa
gi|24 : TTGCGATTACGACACGT----CAGGTTT-----CAGTTATTATAACCCACAACT-GATGA--TAAA--TATTT------GATTGATA-GTTTTAACCAACATCCACACAG--TACAT-TGCGGTG-------A-----------C---------------ACGG---A-CA-AA-A----T--A-TA----CGATA---A------
gi|25 : GATTTCCCACAGAGAT--TT--GAAAGATTCATACATGCATAC-Agcatactatatttcca
gi|26 : catagagGGAA----ACAAGCGA-TGCATAC-TTTTTTA-----AG---ACGTTAAAACTCTAAAGTTTTACCTGCAT-----TTACTAATACTTCGAACTTCGAACA-GGAATAAACCTTcagcctttgattttttgctctgattaaatacatgtaatagttattcttgtgattttattt
gi|27 : gat-GTTTTAATTGCAA-----TTGCTAGT-------ACTTCGGACATGAAACAGTCCGTCGGATAAGCATCTTTTGGCAATGTTTTAA-TG-T--TCTCT-TT---T
gi|28 : AA-----TGACTAGT-------GCTTCGAACA-GGAATTAATCTTCGGAGTAGCATA---CGACACTG--TTAATTG-G--TA-TT-TG---TTGATTT-Tagg
gi|29 : acaTTTCAGCAATGTTTTAA-TG-G--TA-TA-TT---TTGATTT-TTAAGGCTGAAT-GAACAATTCATTTTCATTGCTTA
gi|3 : cttGATTTCCCATAGAGAT--TT--GGAGGAGTCATATATGCA---------------ATCGTG-TCCCTATATTCTTA---TCTTA------TATATTT-CTA----CATTTCTTTAACATGCTCAGAGAACATATT--------------------TGACACCAAAAT---GA-CTAATATAATTTCACAATT-ATAACAATACTGATAAACTA-T--A------TACTGGTCTATCAAAACCTTC-GTT-------AATAAAAAA-----AA---TAAACACAA-A-TAAAGGA-AAATA-AT-CATGCGACA----T-TTT---TC-------ATGTATTCATTTCACTC--TAT-T--TTTTATTCCAAATTCATT-ATATGATCCAAATATGTTACACAA-----GAACTTCATAATATAG-GATTACGACGCGT----CATGATT-----CAGTAATTGTAACCCCGTACT-GATGA--ACACTATGTTT------ATTTGTTAT-TTTT-ACCAGTA---AG------CACGC-TGC-----------A-----------TCATGCAGAGACACTAAC-G---A--A-AT-ATATTT--A-TA----ATATA---ATATTTTTT---------------CATGC------A----T-TGC---ACCGATCTCGCTATTCAAAAGAATTCGTTCCAGG--C---------T---G---AA----C-----A--------------------T------A-------C--TATTGCGATATCTG-CCAGAGCAT-AG---ATGCTATACGATACACGA-ATCAGTGT------------G-A-CCCTTC----TCAT-TCC-ATGGTTCCGT-------CATTTAAGGTTGCAACTCCCATTTCTATTAA---ATA------GTTTCATTTA-CCTT-GATATTTTAATTGTAATAACCT--TAACAACAAAT
gi|30 : agTGCAA-----TTACTCGT-------GTTTTGAATA-GGAATAAACCTTCGGATTAGCACATTTgactagt
gi|4 : tcttttagagtgtaaaacttACGACTTCCTACAGAGAT--TT--GAACGATTCATATATGCATAC-A-----GCTAAATCATG-CC---ATATTCTTAATATCATA------TGCATTT-CTA----CATTTCTTTAACATGCTCAGAGAATACCTT--------------------TGATAGACACCCTTGAA-CTGACATAACTACACGCTT-ATTACAATACTGATACAATA-A--A------AAATGGCCAACCACGACATAC-ATC-------ATT--AAAG-----AA---TAAATACAA-A-TACAGTA-AAACA-AA-GATGCAAAAC---T-TTT---CA-------TTTAAT-CATTTTGCCCTTTTT-T--TTTCATTCCAAA---AATCATATGATCAAAATGTATTACACAG-----TATATTCAGATCTTTG-GA-----ATACGT----CAGGTTT-----GAGTGATTATAA-ACCCTGCT-GATGA--ACACTTTATTTCAAATCATTTGATATGTTTTAAACCGTA---ACTAAATGTACGC-TGC-----------A-----------T----------------C-GTGCA-GAGAC-A----T--A-TA----CGATA---A------TT----------------ATAT------AATATT-TGT--------TCTCGCTATTCAGAAGAATTCGTTCCAGG--CAG---A---T---G---GG----
gi|5 : gTCCCACAACCAT--TT--GAACGATTCATACATACATAG-ATTTG--A---ATCATG-CC---ATATTCTTAGCATT---------TGCATTT-CTC----AATTTCTTAAACATACTCAGAGAACACCTT--------------------TGGTACACACCTTTGAA-CTGACGTAACTACACGCTT-ATTACAATACTGATGCACTA-T--C------TACTAGTCATTCACGACCTAC-AGT-------AAT--ACA-------------------A-A-TAAGATA-AAACA-AA-AATGCAAAAC-----TTT---TC-------TTGCAACCATTTCGCTC--TTT-C--TTTCATACCAAACTCATT-ATATGATAAAAATATATTAAACAG-----TAAATTAACATCTTTT-GATCACGACACGT----CAGGTTT-----CAGTAAATATAACCCCGTACTGGAGAA--ACTATTTATTT------ATTTGATATGTTTTAACCAGTA---AC------TTCAC-TGC-----------A-----------A---------------AC-G---A-TA-AT-A----T--ATTAGGCTATATA---ATATGT-TT---------------CATGC------A----T-TGC---GCAGATCTCGGTATTTAAAAGAATTTGTTCCCTG--CAG---A---T---G---AG----A-----T--------------------T------T-------C--CACCATtata
gi|6 : ATTTTTG-GATTACGACACGT----CAGGTTT-----CATTAATCATAACCTGCTACT-GTTGA--ACAAATCATGT------ACGTGTTATGATTTA-CCAGTA---AC------TTCAC-TTCCCCGTGAAGAGA-----------C---------------AC-G---A-AAGAA-A----T--A-TA----CTATA---A------T----------------CATATTCAATAA----T-TTCTTTACCGATCTCGCTATTCAGAAAATCTCGTTCCGTG--CAT---A---TATTG---AGTGTCG-----T--------------------T------TTT-----C--CATAATAATTACTGACAA-ATAATAAATTTATGCTACACGTTAAACAA-ATCAGTCT------------G-A-CC----------AT-G-G-ATGGTTCCAA-------CATGTATGAT-GCAACCCCTATTTAAATTAA---ATA------GTTTA---------------TTTTAATCGTAATGACCT--TTACACCAAATTGCAGCG-CGTCGGCATTGACGTCACATTTAAGAGAG----ATTAGCAATGTCAAAT-TTT
gi|6 : tcTTCGAACA-GTAATAAACCTTCGGATTAGCATATTTCGGAAATA---TAA-TA-AACTATCTATT---TTCATTG-TTcgaacagtaataaaccttcggattagcatatttcggaaatataataaactatctattttcattgtttatgacct
gi|6 : tcatttttggattacgacacgtcaggtttcattaatcataacctgctactgttgaacaaatcatgtacgtgttatgatttaccagtaacttcacttccccgtgaagagacacgaaagaaatatactataatcatattcaataatttctttaccgatctcgctattcagaaaatctcgttccgtgcatatattgagtgtcgtttttccataataattactgacaaataataaatttatgctacacgttaaacaaatcagtctgaccatggatggttccaacatgtatgatgcaacccctatttaaattaaatagtttattttaatcgtaatgacctttacaccaaattgcagcgcgtcggcattgacgtcacatttaagagagattagcaatgtcaaattT-AAT-AAACTATCTATTTTCATTGTTTATGACCTtatgacct
gi|7 : tcatttttggattacgacacgtcaggtttcattaatcataacctgctactgttgaacaaatcatgtacgtgttatgatttaccagtaacttcacttccccgtgaagagacacgaaagaaatatactataatcatattcaataatttctttaccgatctcgctattcagaaaatctcgttccgtgcatatattgagtgtcgtttttccataataattactgacaaataataaatttatgctacacgttaaacaaatcagtctgaccatggatggttccaacatgtatgatgcaacccctatttaaattaaatagtttattttaatcgtaatgacctttacaccaaattgcagcgcgtcggcattgacgtcacatttaagagagattagcaatgtcaaattttcgaacagtaataaaccttcggattagcatatttcggaaata-----------A-----------T---------------AG-G---A-TA-ATCA----T--A-CA----TGATAGT-A------TT---------------T---C------A----T-TTC---ACCTATATCTCTATTAAGAAGAGCGTATTCCGGGTTCAATATA---T---G---GA----G-----TGTCATTATCGAATGTCCTTTT------T-------C--GATCATAATCGCTG-CCAGATCACAAATTCATGCTGCGAGTTAAAGGA-ATCAGTCT------------G-A-TAGTTT----TTTT-A-C-ATGGTTCCAAAAGGGTGCA-ATGTGGTTGTAACCATCATTGTAATTAAATTATG------GTTTAATTTATCC-C-GATATCT--------------------CAACAAAGTCCAGCA-CGCCCACATTTAGGTCACATTTAAGAAAG----ATAAGCGA-GGTAAACATTTTTTT-----AA---GATAG-------TAA------AACTGAAA-----GTACTAGT-------TCTTCGAACA-GGAATAAACTTTCGGTTTAGCATATTTAGAAAATTATTTAA-TG-A--TATTT-TT---TT-AC-------GGCT-GATAAAACTATTTATTTTCATTGCTCATGAC
gi|8 : aaataattTTCCCACGGAGAT--TT---AATGA-----------ATAT-GTTTGTGC---ATCATG-TC---CTATTATTTATATCATAAAATTATATATTT-CTA----CATTTCCTTAACATGCTCAGAGAACATATT--------------------TGATACACATAT---AA-CTGACATA--------TTT-ATTAAAATGCTGTGAAATTG-T--C------TACCGATCAATCACAACCTAC-GTTTAAAAAGAAC--AAAA-----AA---TAAAACC-A-A-TGAAATA-TAACC-AA-GATGCGAAAC---A-TTT---t
gi|9 : aaattggaatgaaggccaatgtaatgcataacaggtcatatttgacaacctgtacttttggtgtaaaacaactcactagtcatatgcatgagcaactgcgtagaactacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATGCTCATATAACAC-TT--------------------TGATACACACAA---AAACTGACATAATTGCACGCTTTAT-ACAATAC-----------------------------AAT---AACCTAC-AAC-------AAT--GAAA-----A----TAAATAA-A-AATAAAGTA-AATCA-A--GATAAGAAAC---T-TTTAACTC-------TTTCATCTTTTTTATTC--TTT-C--TTTCTTTCCGA-CTCAG-CATACAATCGAAATAAATTACATGG-----GGAATTCATAGTTTTG-GATTACGCCACGTGCGCCAATTCT-----CAGTAATCATGACCCACTACT-GATGAATACAA--GGTTT------ACCTGCTA--------------------------ATGT-TGC-----------C-----------T---------------A--G---G-TA-AT-A-----------------ATA---T------TA---------------CAT-------------T-TGA---ATCGATCTCGCTACTCAGAAGAATTCGTTTCCGG--CAG---ATGTT---G---AG----GGTTGTT--------------------T------T-------C--C----------------AGATCAT-AA---ATGCTGCATGTTACACGA-ATCAGCCG------------G-G-TCCCTC----TCAA-T-CTATTGTTcaaaccaatc