lowQualScore : 666666666666666666666666666666666666666666666666666666666 1 1
lowQualScore : 2 1 888888888888888888888888888888888888888888888888888888888 33 55555 6 0 22 2 6
lowQualScore : . . ......................................................... .. ..... . . .. . .
lowQualScore : 0 9 888888888888888888888888888888888888888888888888888888888 22 00000 6 4 99 6 2
consensus : ATTTTTATTTACCTGAGAACCGTTGTAA-ACATAAACAGG-TATCTTATTATTGA-TTT-G--GG-GTTTGCAGGTT---TGCAGGTT-TAAATGCATA--TTAAA-ACTA-TGTTC--GCC-----AGGCACGATTTACCTACTTTACCTATAT--CAAAATGCAGTGACCGTATCTCATTTGCATTCAAAT
Reference ( gi|2 ) : ATTTTTATTTACCTGAGAACCGTTGTAA-ACATAAACAGG-TATCTTATTATTGA-GTT-G--GG-GTTTGCAGGTT---TGCAGGTT-TGAATGTATAAGTTAAA-ACTA-TGTTC--GCC-----AGGCACGATTTGCCTACTTTACCTATAT--CAAAATGCAGTGACGGTATCTCATTTGCAATCAAATATA
gi|5 : ATTTCTATTTACCTGCGAACCGTTGTAA-ACATAAATAGG-TATCTTATTATTAA-TTT-G--G--------AGATT---TGCAGGTT-TAAATGCATATGTTAAA----------C--GCC-----AGGCACGATTTACATTCTTTACATGTAT--CAAAAGGCAGTGACTGTATCTCATTTGCATTCAAAT
gi|4 : tgATTTGTATTTACCTGAGAACTGTTGGAA-ACATAAACAGG-TATCTTATTATTGA-TTTTG--GG-GTTTGCAGATT------AAA-----AAGGTATA---------CTA-TGTTC--GCC-----AGGCACGATTTACCTGCATTACCTTTAT--CAAAATGCAGTGACCGTATCTCATTTGCATTAAAATttgaatcga
gi|11 : agatgATTTCTATTTACCTGAGAACCGTTGTAA-ACATAAACAGG-TATCTTATTATTGA--TT-T--GG-GT------GTT---TGTAGATT-TAAATGCACATTTTAAA-A--------C--GCC-----AGGAACAATTTACCTACTTTCCGTATAT--CAAAATTCAGTGACCGTATCTCATTTGCATTGAAAttgaatc
gi|9 : gATTTTTATTAAACTGAGAAATGTTGTAA-ACATAAAAAG---ATCTTATTAATAA-TTT-G--GGTGTTTGCAGGTT---TACA-----TGCATG-------------CTA-TGTTC--GCC-----AGGCACGATTTACCTACTTTACCTATAT--CAAAATACAGTGACCAAATCTCATTTGCATTCAAAT
gi|7 : ATTTTTGTTTACCTGAGAACCGTTGTAATAGA-AAACAGG-TATCTTATAATTGA-TTT-G--GA-GTTT---------------------AATATATA-GTTAATTACTA-TGTTT--GCA-----AGGCACGATTTACATACTTTACCTATAT--AAAAATGCAGTGACGGTATCTCATTTGCATTTAAATctgaatcg
gi|10 : ATTTTTATTTACCTGAGAACCGTTGTTA-ACATAAACAGG-TATCTTATTATTGA------------TTTGTGGGTT---TGCAGTTT-TAAATGCAT---------ACTA-TGTCC--GCC-----AGGCACG-------------ACTTATAT--CAGAATGCAGTGACCGTTTCTTATATGCATTCAAATttgaatcgactg
gi|20 : tgATTTTTATTTACCTGAGAACCGTTGTAG-GCATAAACAGG-TATCTTATTATTGA-TTT-G--GG--------GGTT---TGCAGGTT-TAAAAGCAT---------ACTT-TGTCC--GCC-----GGGCACGATTTCCGTACTTTAttgaatcgactgtaa
gi|14 : tgATTTTTATTTAC-----AACCTTTGTGA-ACATAAACAGA-TATCTTATTTTTGA-TTT-T--GG-GT----A---T---TGCAGGCT-TAAATGAATG---------CTA-TGTTC--GCC-----AGGCACGATTTATCTACTTTACCTATAT--TAAAAAGCA
gi|24 : tgATTTTTATTTGCCTGAGAACCGCTGTAA-ACATAAACAGG-TATTTTATTATTGA-TTTAG--GG-GTTTTCAttcaaatttaaatcgactg
gi|22 : aggtgATTTTTATTTATCTGAGTACCGAAGTAA-ACGTAAACAAG-TATCTTATTATTAA------------TTTGCGGGAT---GGCAGGTT-TAAATGCA
gi|21 : aggtgATTTTTATTTACCTAAGAACGGTTGTAA-CCATTACCAAG-TATC---TTGTTGA-TTT-GA-GG-GGTAGCAGG
gi|3 : gTTTTTATTTACCTGAGAACTGTTGTAA-ACATAAACAGG-TATCTTATTATTGA-TTT-A--GG-G-------GTT---TGCAGGTT-TAGATTTATA---------CTA-TGTTT--GCC-----AGGCACAATTTACCAACTTTACCTATAT--CAAAATGCAGTGACCATATCTCATTTGCATTTAAATnnnnnnnnnncatcaacttcaatagcaaa
gi|12 : gtTTCTTATTTACCTGAGAACCGTTGTAA-ATATCAACAGG-TATCTTTTTATTGA-TTT-GAAGG-GTTTGT---TT---T----ATTATTAATATATA--TTTAA-TCAATTGTTT--GCC-----AGGCACGATTAACCTACTTTACATATAT--CAAAATGCAGTGACCGTTTTTTATTttgaatcgactg
gi|17 : ggtTTTTTATTTACCTGAGAACCGTTGTAA-ACATTAACAGG-TATCTAATTATT
gi|19 : tttTTTTTATTTACCTGAGAAC-----------ATAAACAGG-TTTCTTATTATTGA-TTT-T--GG--------GGAT---TGCAGGTT-TAAATGTGTATGTTAAA-ACTtatgttcgccaggcatgatttatctactttacctatatcaaaatgcagtgactgtatctcatttgcattcaaatttgattc
gi|13 : tgttTTTTATTTACCTGAGAACCGTTGTAA-ACATAATCATG-TATCTTA----------------------GC---------GCATGTT-TCAATGTATA---------CTA-TGTTC--GCC-----AGACACGATTTACATACCGTAACTATAT--CAAAATGCAGTGACCGTAATTCAATTGCATTCAAAtgatccaactttagaagtatttaacagtcatc
gi|23 : aTTTTATTTAACAGAGAACCGTTGTAA-ACATAAACAGG-TATCTCATTATTAATGTG-G--GC-GTTTGCAGgttgaatcca
gi|15 : aggtgtgTTTATTTACCTGAAAACCATTGTAA-ACATAAACAGG-TATCTTATTATTAA-TTT-G--TG-GT-------TT---TGCAGGTT-TAAATGCATA---TAAA---------------C-----AA-------------ACTTTACCTATAT--CAAAATACGGTAACAGTATCTCATTTGCATTCAAGT
gi|6 : ACTTGAGGATCGTTGTAA-ACATAAACAGGATCTCTTAAAACTGA--TT-GC-GG-GGGTGGGGGTTGGTTGCAGGTT-TTAATGCATG---------CTA-TGTAC--ACC-----AGGCACGCTTTACCTACTTTACTTATAT--CAAAATGCAGTGAGATTATCTCATTTGCATTCCAATtttaatcga
gi|18 : ttacTGAGAACCGTTGTAA-ACATAA-CAGG-TAGCTTATTATTGA-------------------------TG-----T-TAAATACATATGATAAA-AT----------GCC-----AGGCACGATTTGACTACTTTACCTATAT--CCAAATACAGTGACCGTATCTCATTTGCATTCAAATtttaa
gi|30 : -TATCTTATTATTGA-TTT-G--GG-ATTTGCAGGTT---T
gi|1 : AATATA-AAGTTAAATACCA-TGTTC--GCC-----CGGCACCATTAACCTACTTTACTTATAT--CCAAATATAGTGACGGCATCTGATTTACAGTGAAATaaatgcata
gi|8 : actgaactaaatgcattttacatttatttttcgctttattactGTTAAA-ACT--TGATCCAACCTTAGTAGGCACAATTTACCTACTTTACCTATAT--CAAAATGCAGTGACCGTATCTCATTTGCACTCAAGTttgaatcgactgtagcaatacaacataattgtgtaagtcataatcataaccacctactacctgattatatcggttccaaatatgt
gi|17 : TA-TGTTC--GCC-----AGGCATGATTTATCTACTTTACCTATAT--CAAAATGCAGTGACTGTATCTCATTTGCATTCAAATttgaatcgactgtaaccagtcaacaacgacgatgttaaaagattcaccattaggtgaataattgcaacttgacatga
gi|25 : ttttttttatttacctgagaaccgttgtaaacattaacaggtatctaattatt-----AGGCA-GATTTACCTGCTTTAC-TATAT--CAAAATGCAGTGACCGTATCTCATTTGCATTCAAttgattc
gi|28 : -----AGGCACGATTTACTTAAGTTACCTCTAT--CAAAATGCAGTGAC-TTATCTCATTTtttt
gi|16 : -----AGGGACGACATATCTACTTTACATATATATCAAA--GCAGTGACCGTATCTCATTTGCATTCAGATc
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|26 ): GATTTTTTGTATCGTTTCAAAATGTTTACTATAATGTCGCACATTTTCATTTCAT
Unaligned ( gi|27 ): TCGACAGTCACAAAGTGAGAACATGTCCCAGTATTTGAACTTACACTTGACCTGA
Unaligned ( gi|29 ): GACACCATTGGGTTACTGTATTACAGCAAAATATGATGTCATTCAGG
Unaligned ( gi|31 ): CATATATACATAAGTATATATACGTCATAACGATA
Unaligned ( gi|32 ): TAATATAACAATATAGCATGTGGATATTCTTGTA
Alignments
lowQualScore : 6666666666666666 444444444444
lowQualScore : 1 1 3333333333333333 333 33 33 222222222222 2 33 44444 22
lowQualScore : . . ................ ... .. .. ............ . .. ..... ..
lowQualScore : 9 8 6666666666666666 999 11 11 999999999999 2 11 88888 88
consensus : ATTTTTATTTACCTGAGAACCGTTGTAA-ACATAAACAGG-TATCTTATTATTGATTT-G--GG-GT-TG--GGTT---TGCAGGTTTA--AA--TGCATA--T--TAAA-ACTAT-GTTC--GCC-----AGGCACGATTTACCTACTTTACCTATAT--CAAAATGCAGTGACCGTATCTCATTTGCATTCAAAT
Reference ( family-4417 ) : ATTTTTATTTACCTGAGAACCGTTGTAA-ACATAAACAGG-TATCTTATTATTGATTT-G--GG-GTTTGCAGGTT---TGCAGGTTTA--AA--TGCATA--T--TAAA-ACTAT-GTTC--GCC-----AGGCACGATTTACCTACTTTACCTATAT--CAAAATGCAGTGACCGTATCTCATTTGCATTCAAAT
gi|1 : --T--TAAATACCAT-GTTC--GCC-----CGGCACCATTAACCTACTTTACTTATAT--CCAAATATAGTGACGGCATCTGATTTACAGTGAAAT
gi|10 : actgaactaaatgcattttacatttatttttcgctttattactaatataaagATTTTTATTTACCTGAGAACCGTTGTTA-ACATAAACAGG-TATCTTATTATTGATTT-G--------TG--GGTT---TGCAGTTTTA--AA--TGCAT-----------ACTAT-GTCC--GCC-----AGGCACG-------------ACTTATAT--CAGAATGCAGTGACCGTTTCTTATATGCATTCAAATttgaatcgactgtagcaatacaacataattgtgtaagtcataatcataaccacctactacctgattatatcggttccaaatatgt
gi|11 : tgATTTCTATTTACCTGAGAACCGTTGTAA-ACATAAACAGG-TATCTTATTATTGATTT----GG-GT------GTT---TGTAGATTTA--AA--TGCACATTT--TAAA-A--------C--GCC-----AGGAACAATTTACCTACTTTCCGTATAT--CAAAATTCAGTGACCGTATCTCATTTGCATTGAAAttgaatcgactgtaa
gi|12 : gTTCTTATTTACCTGAGAACCGTTGTAA-ATATCAACAGG-TATCTTTTTATTGATTT-GAAGG-GTTTGT---TT---TA-----TTATTAA--TATATA--T--TTAA-TCAATTGTTT--GCC-----AGGCACGATTAACCTACTTTACATATAT--CAAAATGCAGTGACCGTTTTTTATT
gi|13 : ggtTTTTATTTACCTGAGAACCGTTGTAA-ACATAATCATG-TATCTTA---------------------GC---------GCATGTTTC--AA--TGTATA-----------CTAT-GTTC--GCC-----AGACACGATTTACATACCGTAACTATAT--CAAAATGCAGTGACCGTAATTCAATTGCATTCAAA
gi|14 : aATTTTTATTTAC-----AACCTTTGTGA-ACATAAACAGA-TATCTTATTTTTGATTT-T--GG-GT----A---T---TGCAGGCTTA--AA--TGAATG-----------CTAT-GTTC--GCC-----AGGCACGATTTATCTACTTTACCTATAT--TAAAAAGCAgttgaatcca
gi|15 : tgTTTATTTACCTGAAAACCATTGTAA-ACATAAACAGG-TATCTTATTATTAATTT-G--TG-GT-------TT---TGCAGGTTTA--AA--TGCATA--T----AA-ACAA-------------------------------ACTTTACCTATAT--CAAAATACGGTAACAGTATCTCATTTGCATTCAAGTttcaaatttaaatcgactg
gi|16 : -----AGGGACGACATATCTACTTTACATATATATCAAA--GCAGTGACCGTATCTCATTTGCATTCAGATtttaatcga
gi|17 : attctatgggacgacaTTTTTATTTACCTGAGAACCGTTGTAA-ACATTAACAGG-TATCTAATTATTTATttgaaccgactgcaatacgttttgtttgtattattagaatacacgctttcattggataatgt
gi|17 : tttTAT-GTTC--GCC-----AGGCATGATTTATCTACTTTACCTATAT--CAAAATGCAGTGACTGTATCTCATTTGCATTCAAATgttcgccaggcatgatttatctactttacctatatcaaaatgcagtgactgtatctcatttgcattcaaatttgattc
gi|18 : ttttttttatttacctgagaaccgttgtaaacattaacaggtatctaattattTGAGAACCGTTGTAA-ACATAA-CAGG-TAGCTTATTATTGAT----------------------------GTT-A--AA--TACATA--TGATAAA-AT----------GCC-----AGGCACGATTTGACTACTTTACCTATAT--CCAAATACAGTGACCGTATCTCATTTGCATTCAAATttgattc
gi|19 : TTTTTATTTACCTGAGAAC-----------ATAAACAGG-TTTCTTATTATTGATTT-T--GG--------GGAT---TGCAGGTTTA--AATGTGTATG--T--TAAA-ACT
gi|2 : tgttATTTTTATTTACCTGAGAACCGTTGTAA-ACATAAACAGG-TATCTTATTATTGAGTT-G--GG-GTTTGCAGGTT---TGCAGGTTTG--AA--TGTATAAGT--TAAA-ACTAT-GTTC--GCC-----AGGCACGATTTGCCTACTTTACCTATAT--CAAAATGCAGTGACGGTATCTCATTTGCAATCAAATtgatccaactttagaagtatttaacagtcatc
gi|20 : ATTTTTATTTACCTGAGAACCGTTGTAG-GCATAAACAGG-TATCTTATTATTGATTT-G--GG--------GGTT---TGCAGGTTTA--AA--AGCAT-----------ACTTT-GTCC--GCC-----GGGCACGATTTCCGTACTTTAata
gi|21 : tgATTTTTATTTACCTAAGAACGGTTGTAA-CCATTACCAAG-TATC---TTGTTGATTT-GA-GG-GGTAGCAGG
gi|22 : gATTTTTATTTATCTGAGTACCGAAGTAA-ACGTAAACAAG-TATCTTATTATTAA-----------TTTGCGGGAT---GGCAGGTTTA--AA--TGCAnnnnnnnnnncatcaacttcaatagcaaa
gi|23 : aggtgTTTTATTTAACAGAGAACCGTTGTAA-ACATAAACAGG-TATCTCATTATTAATGT-G--GGCGTTTGCAG
gi|24 : aggtgtgATTTTTATTTGCCTGAGAACCGCTGTAA-ACATAAACAGG-TATTTTATTATTGATTTAG--GG-GTTTTCA
gi|25 : aggtg-----AGGCA-GATTTACCTGCTTTAC-TATAT--CAAAATGCAGTGACCGTATCTCATTTGCATTCAA
gi|28 : -----AGGCACGATTTACTTAAGTTACCTCTAT--CAAAATGCAGTGACT-TATCTCATTTtttt
gi|3 : TTTTTATTTACCTGAGAACTGTTGTAA-ACATAAACAGG-TATCTTATTATTGATTT-A--GG-G-------GTT---TGCAGGTTTA--GA--TTTATA-----------CTAT-GTTT--GCC-----AGGCACAATTTACCAACTTTACCTATAT--CAAAATGCAGTGACCATATCTCATTTGCATTTAAATc
gi|30 : gt-TATCTTATTATTGATTT-G--G---------GATT---TGCAGGTTTA--AA--TGCATA--ttgaatcgactg
gi|4 : ATTTGTATTTACCTGAGAACTGTTGGAA-ACATAAACAGG-TATCTTATTATTGATTT-T--GG-G-------GTT---TGCAGATTAA--AA--AG-GTA--T-------ACTAT-GTTC--GCC-----AGGCACGATTTACCTGCATTACCTTTAT--CAAAATGCAGTGACCGTATCTCATTTGCATTAAAAT
gi|5 : agatgATTTCTATTTACCTGCGAACCGTTGTAA-ACATAAATAGG-TATCTTATTATTAATTT-G--G--------AGATT---TGCAGGTTTA--AA--TGCATA--TGTTAAA----------C--GCC-----AGGCACGATTTACATTCTTTACATGTAT--CAAAAGGCAGTGACTGTATCTCATTTGCATTCAAATttgaatc
gi|6 : tgACTTGAGGATCGTTGTAA-ACATAAACAGGATCTCTTAAAACTGATTG-C--GG-GGGTGGGGGTTGGTTGCAGGTTTT--AA--TGCATG-----------CTAT-GTAC--ACC-----AGGCACGCTTTACCTACTTTACTTATAT--CAAAATGCAGTGAGATTATCTCATTTGCATTCCAATttgaatcga
gi|7 : ttacATTTTTGTTTACCTGAGAACCGTTGTAATAGA-AAACAGG-TATCTTATAATTGATTT-G--GA-GTTT----------------------AA--TATATAG-T--TAATTACTAT-GTTT--GCA-----AGGCACGATTTACATACTTTACCTATAT--AAAAATGCAGTGACGGTATCTCATTTGCATTTAAATtttaa
gi|8 : --T--TAAA-ACT-T-GATCCAACCTTAGTAGGCACAATTTACCTACTTTACCTATAT--CAAAATGCAGTGACCGTATCTCATTTGCACTCAAGTttgaatcgactg
gi|9 : gATTTTTATTAAACTGAGAAATGTTGTAA-ACATAAAAAG---ATCTTATTAATAATTT-G--GG----TG----TT---TGCAGGTTTA--CA--TGCATG-----------CTAT-GTTC--GCC-----AGGCACGATTTACCTACTTTACCTATAT--CAAAATACAGTGACCAAATCTCATTTGCATTCAAATttgaatcgactgtaaccagtcaacaacgacgatgttaaaagattcaccattaggtgaataattgcaacttgacatga
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): GATTTTTTGTATCGTTTCAAAATGTTTACTATAATGTCGCACATTTTCATTTCAT
Unaligned ( gi|27 ): TCGACAGTCACAAAGTGAGAACATGTCCCAGTATTTGAACTTACACTTGACCTGA
Unaligned ( gi|29 ): GACACCATTGGGTTACTGTATTACAGCAAAATATGATGTCATTCAGG
Unaligned ( gi|31 ): CATATATACATAAGTATATATACGTCATAACGATA
Unaligned ( gi|32 ): TAATATAACAATATAGCATGTGGATATTCTTGTA
Alignments
lowQualScore : 444444444444444444 444444444444
lowQualScore : 1 1 6666666 888888888888888888 22 22 0 000000000000 2 33 44444 22
lowQualScore : . . ....... .................. .. .. . ............ . .. ..... ..
lowQualScore : 9 8 2222222 111111111111111111 99 99 1 444444444444 2 11 88888 88
consensus : ATTTTTATTTACCTGAGAACCGTTGTAA-ACATAAACAGG-TATCTTATTATTGATT-------T-G--GGG--T---GGGT-TTGCAGGTTTA--AA--TGCATA--T--TAAA-ACTA-TGTTC--GCC-----AGGCACGATTTACCTACTTTACCTATAT--CAAAATGCAGTGACCGTATCTCATTTGCATTCAAAT
Reference ( family-4417 ) : ATTTTTATTTACCTGAGAACCGTTGTAA-ACATAAACAGG-TATCTTATTATTGATT-------T-G--GGG-TT---GGGT-TTGCAGGTTTA--AA--TGCATA--T--TAAA-ACTA-TGTTC--GCC-----AGGCACGATTTACCTACTTTACCTATAT--CAAAATGCAGTGACCGTATCTCATTTGCATTCAAAT
gi|1 : --T--TAAATACCA-TGTTC--GCC-----CGGCACCATTAACCTACTTTACTTATAT--CCAAATATAGTGACGGCATCTGATTTACAGTGAAAT
gi|10 : actgaactaaatgcattttacatttatttttcgctttattactaatataaagATTTTTATTTACCTGAGAACCGTTGTTA-ACATAAACAGG-TATCTTATTATTGATT-------T-G-------T---GGGT-TTGCAGTTTTA--AA--TGCAT-----------ACTA-TGTCC--GCC-----AGGCACG-------------ACTTATAT--CAGAATGCAGTGACCGTTTCTTATATGCATTCAAATttgaatcgactgtagcaatacaacataattgtgtaagtcataatcataaccacctactacctgattatatcggttccaaatatgt
gi|11 : tgATTTCTATTTACCTGAGAACCGTTGTAA-ACATAAACAGG-TATCTTATTATTGATT-------T----GGG-T------GT-TTGTAGATTTA--AA--TGCACATTT--TAAA-A--------C--GCC-----AGGAACAATTTACCTACTTTCCGTATAT--CAAAATTCAGTGACCGTATCTCATTTGCATTGAAAttgaatcgactgtaa
gi|12 : gTTCTTATTTACCTGAGAACCGTTGTAA-ATATCAACAGG-TATCTTTTTATTGATT-------T-GAAGGG-TT---TGTT-TTA-----TTATTAA--TATATA--T--TTAA-TCAATTGTTT--GCC-----AGGCACGATTAACCTACTTTACATATAT--CAAAATGCAGTGACCGTTTTTTATT
gi|13 : ggtTTTTATTTACCTGAGAACCGTTGTAA-ACATAATCATG-TATCTTA--------------------------------GC---GCATGTTTC--AA--TGTATA-----------CTA-TGTTC--GCC-----AGACACGATTTACATACCGTAACTATAT--CAAAATGCAGTGACCGTAATTCAATTGCATTCAAA
gi|14 : aATTTTTATTTAC-----AACCTTTGTGA-ACATAAACAGA-TATCTTATTTTTGATT-------T---------T---GGGTATTGCAGGCTTA--AA--TGAATG-----------CTA-TGTTC--GCC-----AGGCACGATTTATCTACTTTACCTATAT--TAAAAAGCAgttgaatcca
gi|15 : tgTTTATTTACCTGAAAACCATTGTAA-ACATAAACAGG-TATCTTATTATTAATT-------T-G-------T---GGTT-TTGCAGGTTTA--AA--TGCATA--T----AA-ACAA-------------------------------ACTTTACCTATAT--CAAAATACGGTAACAGTATCTCATTTGCATTCAAGTttcaaatttaaatcgactg
gi|16 : -----AGGGACGACATATCTACTTTACATATATATCAAA--GCAGTGACCGTATCTCATTTGCATTCAGATtttaatcga
gi|17 : attctatgggacgacaTTTTTATTTACCTGAGAACCGTTGTAA-ACATTAACAGG-TATCTAATTATTTATttgaaccgactgcaatacgttttgtttgtattattagaatacacgctttcattggataatgt
gi|17 : tttTA-TGTTC--GCC-----AGGCATGATTTATCTACTTTACCTATAT--CAAAATGCAGTGACTGTATCTCATTTGCATTCAAATgttcgccaggcatgatttatctactttacctatatcaaaatgcagtgactgtatctcatttgcattcaaatttgattc
gi|18 : ttttttttatttacctgagaaccgttgtaaacattaacaggtatctaattattTGAGAACCGTTGTAA-ACATAA-CAGG-TAGCTTATTATTGAT---------------------------------GTT-A--AA--TACATA--TGATAAA-AT----------GCC-----AGGCACGATTTGACTACTTTACCTATAT--CCAAATACAGTGACCGTATCTCATTTGCATTCAAATttgattc
gi|19 : TTTTTATTTACCTGAGAAC-----------ATAAACAGG-TTTCTTATTATTGATT-------T-T--G--------GGGA-TTGCAGGTTTA--AATGTGTATG--T--TAAA-ACT
gi|2 : tgttATTTTTATTTACCTGAGAACCGTTGTAA-ACATAAACAGG-TATCTTATTATTGAGT-------T-G--GGG-TTTGCAGGT-TTGCAGGTTTG--AA--TGTATAAGT--TAAA-ACTA-TGTTC--GCC-----AGGCACGATTTGCCTACTTTACCTATAT--CAAAATGCAGTGACGGTATCTCATTTGCAATCAAATtgatccaactttagaagtatttaacagtcatc
gi|20 : ATTTTTATTTACCTGAGAACCGTTGTAG-GCATAAACAGG-TATCTTATTATTGATT-------T-G--G--------GGGT-TTGCAGGTTTA--AA--AGCAT-----------ACTT-TGTCC--GCC-----GGGCACGATTTCCGTACTTTAata
gi|21 : tgATTTTTATTTACCTAAGAACGGTTGTAA-CCATTACCAAG-TATC---TTGTTGATT-------T-G--AGG------GG---TAGCAGGNNNN--NN--NNNNCA--T--CAA
gi|22 : gATTTTTATTTATCTGAGTACCGAAGTAA-ACGTAAACAAG-TATCTTATTATTAATT-------T-GC-GGG-AT---G------GCAGGTTTA--AA--TGCActtcaatagcaaa
gi|23 : aggtgTTTTATTTAACAGAGAACCGTTGTAA-ACATAAACAGG-TATCTCATTATTAATG-------T-G--G--------GCGT-TTGCAG
gi|24 : aggtgtgATTTTTATTTGCCTGAGAACCGCTGTAA-ACATAAACAGG-TATTTTATTATTGATT-------TAG--GGG-TT---
gi|25 : aggtg-----AGGCA-GATTTACCTGCTTTAC-TATAT--CAAAATGCAGTGACCGTATCTCATTTGCATTCAAttca
gi|28 : -----AGGCACGATTTACTTAAGTTACCTCTAT--CAAAATGCAGTGACT-TATCTCATTTtttt
gi|3 : TTTTTATTTACCTGAGAACTGTTGTAA-ACATAAACAGG-TATCTTATTATTGATT-------T-A--GGG--------GT-TTGCAGGTTTA--GA--TTTATA-----------CTA-TGTTT--GCC-----AGGCACAATTTACCAACTTTACCTATAT--CAAAATGCAGTGACCATATCTCATTTGCATTTAAATc
gi|30 : gt-TATCTTATTATTGATT-------T-G--GGA-TT---------TGCAGGTTTA--AA--TGCATA--ttgaatcgactg
gi|4 : ATTTGTATTTACCTGAGAACTGTTGGAA-ACATAAACAGG-TATCTTATTATTGATT-------T-T--GGG--------GT-TTGCAGATTAA--AA--AG-GTA--T-------ACTA-TGTTC--GCC-----AGGCACGATTTACCTGCATTACCTTTAT--CAAAATGCAGTGACCGTATCTCATTTGCATTAAAAT
gi|5 : agatgATTTCTATTTACCTGCGAACCGTTGTAA-ACATAAATAGG-TATCTTATTATTAATT-------T-G--GAG--------AT-TTGCAGGTTTA--AA--TGCATA--TGTTAAA----------C--GCC-----AGGCACGATTTACATTCTTTACATGTAT--CAAAAGGCAGTGACTGTATCTCATTTGCATTCAAATttgaatc
gi|6 : tgACTTGAGGATCGTTGTAA-ACATAAACAGGATCTCTTAAAACTGATTGCGGGGGT-G--GGGGTT---GG---TTGCAGGTTTT--AA--TGCATG-----------CTA-TGTAC--ACC-----AGGCACGCTTTACCTACTTTACTTATAT--CAAAATGCAGTGAGATTATCTCATTTGCATTCCAATttgaatcga
gi|7 : ttacATTTTTGTTTACCTGAGAACCGTTGTAATAGA-AAACAGG-TATCTTATAATTGATT-------T-G--GAG-TT---TAAT-ATATAG--TTA--A-----------T--TA----CTA-TGTTT--GCA-----AGGCACGATTTACATACTTTACCTATAT--AAAAATGCAGTGACGGTATCTCATTTGCATTTAAATtttaa
gi|8 : --T--TAAA-ACT--TGATCCAACCTTAGTAGGCACAATTTACCTACTTTACCTATAT--CAAAATGCAGTGACCGTATCTCATTTGCACTCAAGTttgaatcgactg
gi|9 : gATTTTTATTAAACTGAGAAATGTTGTAA-ACATAAAAAG---ATCTTATTAATAATT-------T-G--GG---T---G--T-TTGCAGGTTTA--CA--TGCATG-----------CTA-TGTTC--GCC-----AGGCACGATTTACCTACTTTACCTATAT--CAAAATACAGTGACCAAATCTCATTTGCATTCAAATttgaatcgactgtaaccagtcaacaacgacgatgttaaaagattcaccattaggtgaataattgcaacttgacatga
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): GATTTTTTGTATCGTTTCAAAATGTTTACTATAATGTCGCACATTTTCATTTCAT
Unaligned ( gi|27 ): TCGACAGTCACAAAGTGAGAACATGTCCCAGTATTTGAACTTACACTTGACCTGA
Unaligned ( gi|29 ): GACACCATTGGGTTACTGTATTACAGCAAAATATGATGTCATTCAGG
Unaligned ( gi|31 ): CATATATACATAAGTATATATACGTCATAACGATA
Unaligned ( gi|32 ): TAATATAACAATATAGCATGTGGATATTCTTGTA
Alignments
lowQualScore : 44444444444444444444 33333333333
lowQualScore : 1 1 66666666666666666666 55555 22 99999999999 2 33 44444 22
lowQualScore : . . .................... ..... .. ........... . .. ..... ..
lowQualScore : 9 8 99999999999999999999 33333 99 77777777777 2 11 88888 88
consensus : ATTTTTATTTACCTGAGAACCGTTGTAA-ACATAAACAGG-TATCTTATTATTGATTT--GGGGT----GGG---T--TTGCAGGTTTA-----AA--TGCATA--T--TAAA-ACTAT-GTTC--GCC-----AGGCACGATTTACCTACTTTACCTATAT--CAAAATGCAGTGACCGTATCTCATTTGCATTCAAAT
Reference ( family-4417 ) : ATTTTTATTTACCTGAGAACCGTTGTAA-ACATAAACAGG-TATCTTATTATTGATTT--GGGGT----GGG---T--TTGCAGGTTTA-----AA--TGCATA--T--TAAA-ACTAT-GTTC--GCC-----AGGCACGATTTACCTACTTTACCTATAT--CAAAATGCAGTGACCGTATCTCATTTGCATTCAAAT
gi|1 : --T--TAAATACCAT-GTTC--GCC-----CGGCACCATTAACCTACTTTACTTATAT--CCAAATATAGTGACGGCATCTGATTTACAGTGAAAT
gi|10 : actgaactaaatgcattttacatttatttttcgctttattactaatataaagATTTTTATTTACCTGAGAACCGTTGTTA-ACATAAACAGG-TATCTTATTATTGATTT-----GT----GGG---T--TTGCAGTTTTA-----AA--TGCAT-----------ACTAT-GTCC--GCC-----AGGCACG-------------ACTTATAT--CAGAATGCAGTGACCGTTTCTTATATGCATTCAAATttgaatcgactgtagcaatacaacataattgtgtaagtcataatcataaccacctactacctgattatatcggttccaaatatgt
gi|11 : tgATTTCTATTTACCTGAGAACCGTTGTAA-ACATAAACAGG-TATCTTATTATTGATTT---GGGT------G---T--TTGTAGATTTA-----AA--TGCACATTT--TAAA-A--------C--GCC-----AGGAACAATTTACCTACTTTCCGTATAT--CAAAATTCAGTGACCGTATCTCATTTGCATTGAAAttgaatcgactgtaa
gi|12 : gTTCTTATTTACCTGAGAACCGTTGTAA-ATATCAACAGG-TATCTTTTTATTGATTT--GAAG------GG---T--TTGT---TTTATTATTAA--TATATA--T--TTAA-TCAATTGTTT--GCC-----AGGCACGATTAACCTACTTTACATATAT--CAAAATGCAGTGACCGTTTTTTATT
gi|13 : ggtTTTTATTTACCTGAGAACCGTTGTAA-ACATAATCATG-TATCTTA-----------------------G---C----GCATGTTTC-----AA--TGTATA-----------CTAT-GTTC--GCC-----AGACACGATTTACATACCGTAACTATAT--CAAAATGCAGTGACCGTAATTCAATTGCATTCAAA
gi|14 : aATTTTTATTTAC-----AACCTTTGTGA-ACATAAACAGA-TATCTTATTTTTGATTT--TGGGT----A--------TTGCAGGCTTA-----AA--TGAATG-----------CTAT-GTTC--GCC-----AGGCACGATTTATCTACTTTACCTATAT--TAAAAAGCAgttgaatcca
gi|15 : tgTTTATTTACCTGAAAACCATTGTAA-ACATAAACAGG-TATCTTATTATTAATTT-----GT----GGT---T--TTGCAGGTTTA-----AA--TGCATA--T----AA-ACAA-------------------------------ACTTTACCTATAT--CAAAATACGGTAACAGTATCTCATTTGCATTCAAGTttcaaatttaaatcgactg
gi|16 : -----AGGGACGACATATCTACTTTACATATATATCAAA--GCAGTGACCGTATCTCATTTGCATTCAGATtttaatcga
gi|17 : attctatgggacgacaTTTTTATTTACCTGAGAACCGTTGTAA-ACATTAACAGG-TATCTAATTATTTATttgaaccgactgcaatacgttttgtttgtattattagaatacacgctttcattggataatgt
gi|17 : tttTAT-GTTC--GCC-----AGGCATGATTTATCTACTTTACCTATAT--CAAAATGCAGTGACTGTATCTCATTTGCATTCAAATgttcgccaggcatgatttatctactttacctatatcaaaatgcagtgactgtatctcatttgcattcaaatttgattc
gi|18 : ttttttttatttacctgagaaccgttgtaaacattaacaggtatctaattattTGAGAACCGTTGTAA-ACATAA-CAGG-TAGCTTATTATTGAT----------------------------GTT-A-----AA--TACATA--TGATAAA-AT----------GCC-----AGGCACGATTTGACTACTTTACCTATAT--CCAAATACAGTGACCGTATCTCATTTGCATTCAAATttgattc
gi|19 : TTTTTATTTACCTGAGAAC-----------ATAAACAGG-TTTCTTATTATTGATTT--TG-------GGG---A--TTGCAGGTTTA-----AATGTGTATG--T--TAAA-ACT
gi|2 : tgttATTTTTATTTACCTGAGAACCGTTGTAA-ACATAAACAGG-TATCTTATTATTGAGTT--GGGGTTTGCAGG---T--TTGCAGGTTTG-----AA--TGTATAAGT--TAAA-ACTAT-GTTC--GCC-----AGGCACGATTTGCCTACTTTACCTATAT--CAAAATGCAGTGACGGTATCTCATTTGCAATCAAATtgatccaactttagaagtatttaacagtcatc
gi|20 : ATTTTTATTTACCTGAGAACCGTTGTAG-GCATAAACAGG-TATCTTATTATTGATTT--GG-------GGG---T--TTGCAGGTTTA-----AA--AGCAT-----------ACTTT-GTCC--GCC-----GGGCACGATTTCCGTACTTTAata
gi|21 : tgATTTTTATTTACCTAAGAACGGTTGTAA-CCATTACCAAG-TATC---TTGTTGATTT--GAGG-----GG-------TAGCAGGNNNN-----NN--NNNNCA--T--CAA
gi|22 : gATTTTTATTTATCTGAGTACCGAAGTAA-ACGTAAACAAG-TATCTTATTATTAATTT-----GC----GGG---A--TGGCAGGTTTA-----AA--TGCActtcaatagcaaa
gi|23 : aggtgTTTTATTTAACAGAGAACCGTTGTAA-ACATAAACAGG-TATCTCATTATTAATGT--GG-------GCG---T--TTGCAG
gi|24 : aggtgtgATTTTTATTTGCCTGAGAACCGCTGTAA-ACATAAACAGG-TATTTTATTATTGATTT--AG-------GGG---T--TTTCA
gi|25 : aggtg-----AGGCA-GATTTACCTGCTTTAC-TATAT--CAAAATGCAGTGACCGTATCTCATTTGCATTCAA
gi|28 : -----AGGCACGATTTACTTAAGTTACCTCTAT--CAAAATGCAGTGACT-TATCTCATTTtttt
gi|3 : TTTTTATTTACCTGAGAACTGTTGTAA-ACATAAACAGG-TATCTTATTATTGATTT--AGGG-------G---T--TTGCAGGTTTA-----GA--TTTATA-----------CTAT-GTTT--GCC-----AGGCACAATTTACCAACTTTACCTATAT--CAAAATGCAGTGACCATATCTCATTTGCATTTAAATc
gi|30 : gt-TATCTTATTATTGATTT--GGGAT-------------TTGCAGGTTTA-----AA--TGCATA--ttgaatcgactg
gi|4 : ATTTGTATTTACCTGAGAACTGTTGGAA-ACATAAACAGG-TATCTTATTATTGATTT--TGGG-------G---T--TTGCAGATTAA-----AA--AG-GTA--T-------ACTAT-GTTC--GCC-----AGGCACGATTTACCTGCATTACCTTTAT--CAAAATGCAGTGACCGTATCTCATTTGCATTAAAAT
gi|5 : agatgATTTCTATTTACCTGCGAACCGTTGTAA-ACATAAATAGG-TATCTTATTATTAATTT--GGAG-------A---T--TTGCAGGTTTA-----AA--TGCATA--TGTTAAA----------C--GCC-----AGGCACGATTTACATTCTTTACATGTAT--CAAAAGGCAGTGACTGTATCTCATTTGCATTCAAATttgaatc
gi|6 : tgACTTGAGGATCGTTGTAA-ACATAAACAGGATCTCTTAAAACTGATTGCGGGGGT----GGGGGTTGGTTGCAGGTTTT-----AA--TGCATG-----------CTAT-GTAC--ACC-----AGGCACGCTTTACCTACTTTACTTATAT--CAAAATGCAGTGAGATTATCTCATTTGCATTCCAATttgaatcga
gi|7 : ttacATTTTTGTTTACCTGAGAACCGTTGTAATAGA-AAACAGG-TATCTTATAATTGATTT--GGAGT---------------------TTA-----A---TATATAG-T--TAATTACTAT-GTTT--GCA-----AGGCACGATTTACATACTTTACCTATAT--AAAAATGCAGTGACGGTATCTCATTTGCATTTAAATtttaa
gi|8 : --T--TAAA-ACT-T-GATCCAACCTTAGTAGGCACAATTTACCTACTTTACCTATAT--CAAAATGCAGTGACCGTATCTCATTTGCACTCAAGTttgaatcgactg
gi|9 : gATTTTTATTAAACTGAGAAATGTTGTAA-ACATAAAAAG---ATCTTATTAATAATTT--GGG-T----G-----T--TTGCAGGTTTA-----CA--TGCATG-----------CTAT-GTTC--GCC-----AGGCACGATTTACCTACTTTACCTATAT--CAAAATACAGTGACCAAATCTCATTTGCATTCAAATttgaatcgactgtaaccagtcaacaacgacgatgttaaaagattcaccattaggtgaataattgcaacttgacatga
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): GATTTTTTGTATCGTTTCAAAATGTTTACTATAATGTCGCACATTTTCATTTCAT
Unaligned ( gi|27 ): TCGACAGTCACAAAGTGAGAACATGTCCCAGTATTTGAACTTACACTTGACCTGA
Unaligned ( gi|29 ): GACACCATTGGGTTACTGTATTACAGCAAAATATGATGTCATTCAGG
Unaligned ( gi|31 ): CATATATACATAAGTATATATACGTCATAACGATA
Unaligned ( gi|32 ): TAATATAACAATATAGCATGTGGATATTCTTGTA
Alignments
lowQualScore : 44444444444444444444 33333333333
lowQualScore : 1 1 66666666666666666666 55555 22 99999999999 2 33 44444 22
lowQualScore : . . .................... ..... .. ........... . .. ..... ..
lowQualScore : 9 8 99999999999999999999 33333 99 77777777777 2 11 88888 88
consensus : ATTTTTATTTACCTGAGAACCGTTGTAA-ACATAAACAGG-TATCTTATTATTGATTT--GGGGT----GGG---T--TTGCAGGTTTA-----AA--TGCATA--T--TAAA-ACTAT-GTTC--GCC-----AGGCACGATTTACCTACTTTACCTATAT--CAAAATGCAGTGACCGTATCTCATTTGCATTCAAAT
Reference ( family-4417 ) : ATTTTTATTTACCTGAGAACCGTTGTAA-ACATAAACAGG-TATCTTATTATTGATTT--GGGGT----GGG---T--TTGCAGGTTTA-----AA--TGCATA--T--TAAA-ACTAT-GTTC--GCC-----AGGCACGATTTACCTACTTTACCTATAT--CAAAATGCAGTGACCGTATCTCATTTGCATTCAAAT
gi|1 : --T--TAAATACCAT-GTTC--GCC-----CGGCACCATTAACCTACTTTACTTATAT--CCAAATATAGTGACGGCATCTGATTTACAGTGAAAT
gi|10 : actgaactaaatgcattttacatttatttttcgctttattactaatataaagATTTTTATTTACCTGAGAACCGTTGTTA-ACATAAACAGG-TATCTTATTATTGATTT-----GT----GGG---T--TTGCAGTTTTA-----AA--TGCAT-----------ACTAT-GTCC--GCC-----AGGCACG-------------ACTTATAT--CAGAATGCAGTGACCGTTTCTTATATGCATTCAAATttgaatcgactgtagcaatacaacataattgtgtaagtcataatcataaccacctactacctgattatatcggttccaaatatgt
gi|11 : tgATTTCTATTTACCTGAGAACCGTTGTAA-ACATAAACAGG-TATCTTATTATTGATTT---GGGT------G---T--TTGTAGATTTA-----AA--TGCACATTT--TAAA-A--------C--GCC-----AGGAACAATTTACCTACTTTCCGTATAT--CAAAATTCAGTGACCGTATCTCATTTGCATTGAAAttgaatcgactgtaa
gi|12 : gTTCTTATTTACCTGAGAACCGTTGTAA-ATATCAACAGG-TATCTTTTTATTGATTT--GAAG------GG---T--TTGT---TTTATTATTAA--TATATA--T--TTAA-TCAATTGTTT--GCC-----AGGCACGATTAACCTACTTTACATATAT--CAAAATGCAGTGACCGTTTTTTATT
gi|13 : ggtTTTTATTTACCTGAGAACCGTTGTAA-ACATAATCATG-TATCTTA-----------------------G---C----GCATGTTTC-----AA--TGTATA-----------CTAT-GTTC--GCC-----AGACACGATTTACATACCGTAACTATAT--CAAAATGCAGTGACCGTAATTCAATTGCATTCAAA
gi|14 : aATTTTTATTTAC-----AACCTTTGTGA-ACATAAACAGA-TATCTTATTTTTGATTT--TGGGT----A--------TTGCAGGCTTA-----AA--TGAATG-----------CTAT-GTTC--GCC-----AGGCACGATTTATCTACTTTACCTATAT--TAAAAAGCAgttgaatcca
gi|15 : tgTTTATTTACCTGAAAACCATTGTAA-ACATAAACAGG-TATCTTATTATTAATTT-----GT----GGT---T--TTGCAGGTTTA-----AA--TGCATA--T----AA-ACAA-------------------------------ACTTTACCTATAT--CAAAATACGGTAACAGTATCTCATTTGCATTCAAGTttcaaatttaaatcgactg
gi|16 : -----AGGGACGACATATCTACTTTACATATATATCAAA--GCAGTGACCGTATCTCATTTGCATTCAGATtttaatcga
gi|17 : attctatgggacgacaTTTTTATTTACCTGAGAACCGTTGTAA-ACATTAACAGG-TATCTAATTATTTATttgaaccgactgcaatacgttttgtttgtattattagaatacacgctttcattggataatgt
gi|17 : tttTAT-GTTC--GCC-----AGGCATGATTTATCTACTTTACCTATAT--CAAAATGCAGTGACTGTATCTCATTTGCATTCAAATgttcgccaggcatgatttatctactttacctatatcaaaatgcagtgactgtatctcatttgcattcaaatttgattc
gi|18 : ttttttttatttacctgagaaccgttgtaaacattaacaggtatctaattattTGAGAACCGTTGTAA-ACATAA-CAGG-TAGCTTATTATTGAT----------------------------GTT-A-----AA--TACATA--TGATAAA-AT----------GCC-----AGGCACGATTTGACTACTTTACCTATAT--CCAAATACAGTGACCGTATCTCATTTGCATTCAAATttgattc
gi|19 : TTTTTATTTACCTGAGAAC-----------ATAAACAGG-TTTCTTATTATTGATTT--TG-------GGG---A--TTGCAGGTTTA-----AATGTGTATG--T--TAAA-ACT
gi|2 : tgttATTTTTATTTACCTGAGAACCGTTGTAA-ACATAAACAGG-TATCTTATTATTGAGTT--GGGGTTTGCAGG---T--TTGCAGGTTTG-----AA--TGTATAAGT--TAAA-ACTAT-GTTC--GCC-----AGGCACGATTTGCCTACTTTACCTATAT--CAAAATGCAGTGACGGTATCTCATTTGCAATCAAATtgatccaactttagaagtatttaacagtcatc
gi|20 : ATTTTTATTTACCTGAGAACCGTTGTAG-GCATAAACAGG-TATCTTATTATTGATTT--GG-------GGG---T--TTGCAGGTTTA-----AA--AGCAT-----------ACTTT-GTCC--GCC-----GGGCACGATTTCCGTACTTTAata
gi|21 : tgATTTTTATTTACCTAAGAACGGTTGTAA-CCATTACCAAG-TATC---TTGTTGATTT--GAGG-----GG-------TAGCAGGNNNN-----NN--NNNNCA--T--CAA
gi|22 : gATTTTTATTTATCTGAGTACCGAAGTAA-ACGTAAACAAG-TATCTTATTATTAATTT-----GC----GGG---A--TGGCAGGTTTA-----AA--TGCActtcaatagcaaa
gi|23 : aggtgTTTTATTTAACAGAGAACCGTTGTAA-ACATAAACAGG-TATCTCATTATTAATGT--GG-------GCG---T--TTGCAG
gi|24 : aggtgtgATTTTTATTTGCCTGAGAACCGCTGTAA-ACATAAACAGG-TATTTTATTATTGATTT--AG-------GGG---T--TTTCA
gi|25 : aggtg-----AGGCA-GATTTACCTGCTTTAC-TATAT--CAAAATGCAGTGACCGTATCTCATTTGCATTCAA
gi|28 : -----AGGCACGATTTACTTAAGTTACCTCTAT--CAAAATGCAGTGACT-TATCTCATTTtttt
gi|3 : TTTTTATTTACCTGAGAACTGTTGTAA-ACATAAACAGG-TATCTTATTATTGATTT--AGGG-------G---T--TTGCAGGTTTA-----GA--TTTATA-----------CTAT-GTTT--GCC-----AGGCACAATTTACCAACTTTACCTATAT--CAAAATGCAGTGACCATATCTCATTTGCATTTAAATc
gi|30 : gt-TATCTTATTATTGATTT--GGGAT-------------TTGCAGGTTTA-----AA--TGCATA--ttgaatcgactg
gi|4 : ATTTGTATTTACCTGAGAACTGTTGGAA-ACATAAACAGG-TATCTTATTATTGATTT--TGGG-------G---T--TTGCAGATTAA-----AA--AG-GTA--T-------ACTAT-GTTC--GCC-----AGGCACGATTTACCTGCATTACCTTTAT--CAAAATGCAGTGACCGTATCTCATTTGCATTAAAAT
gi|5 : agatgATTTCTATTTACCTGCGAACCGTTGTAA-ACATAAATAGG-TATCTTATTATTAATTT--GGAG-------A---T--TTGCAGGTTTA-----AA--TGCATA--TGTTAAA----------C--GCC-----AGGCACGATTTACATTCTTTACATGTAT--CAAAAGGCAGTGACTGTATCTCATTTGCATTCAAATttgaatc
gi|6 : tgACTTGAGGATCGTTGTAA-ACATAAACAGGATCTCTTAAAACTGATTGCGGGGGT----GGGGGTTGGTTGCAGGTTTT-----AA--TGCATG-----------CTAT-GTAC--ACC-----AGGCACGCTTTACCTACTTTACTTATAT--CAAAATGCAGTGAGATTATCTCATTTGCATTCCAATttgaatcga
gi|7 : ttacATTTTTGTTTACCTGAGAACCGTTGTAATAGA-AAACAGG-TATCTTATAATTGATTT--GGAGT---------------------TTA-----A---TATATAG-T--TAATTACTAT-GTTT--GCA-----AGGCACGATTTACATACTTTACCTATAT--AAAAATGCAGTGACGGTATCTCATTTGCATTTAAATtttaa
gi|8 : --T--TAAA-ACT-T-GATCCAACCTTAGTAGGCACAATTTACCTACTTTACCTATAT--CAAAATGCAGTGACCGTATCTCATTTGCACTCAAGTttgaatcgactg
gi|9 : gATTTTTATTAAACTGAGAAATGTTGTAA-ACATAAAAAG---ATCTTATTAATAATTT--GGG-T----G-----T--TTGCAGGTTTA-----CA--TGCATG-----------CTAT-GTTC--GCC-----AGGCACGATTTACCTACTTTACCTATAT--CAAAATACAGTGACCAAATCTCATTTGCATTCAAATttgaatcgactgtaaccagtcaacaacgacgatgttaaaagattcaccattaggtgaataattgcaacttgacatga
blockSeqs : T A CGGGGGTGGGGGTTGG TTATT TG TTTTAAAA T CA TTAGT AT
blockSeqs : . . GGGGTTTGCAGGT . . TGATAAAA . . . .
blockSeqs : . . GAAGGGT . . AGTTAAAA . . . .
blockSeqs : . . GGGTGT . . GTTAATTA . . . .
blockSeqs : . . TGGGTA . . TGTTAAA . . . .
blockSeqs : . . GTGGTT . . TTTAAT . . . .
blockSeqs : . . TGGGGA . . TTAAAA . . . .
blockSeqs : . . GGGGGT . . TTAAAA . . . .
blockSeqs : . . GAGGGG . . TAAA . . . .
blockSeqs : . . GCGGGA . . TA . . . .
blockSeqs : . . GGGCGT . . A . . . .
blockSeqs : . . AGGGGT . . A . . . .
blockSeqs : . . AGGGGT . . . . . . .
blockSeqs : . . TGGGGT . . . . . . .
blockSeqs : . . GGAGAT . . . . . . .
blockSeqs : . . GGGTGT . . . . . . .
blockSeqs : . . GGGAT . . . . . . .
blockSeqs : . . GGAGT . . . .
blockSeqs : . . GC . .
blockSeqs : . . . .
blockSeqs : .
blockSeqCons : TTAAA******
originalCons : ATTTTTATTTACCTGAGAACCGTTGTAA-ACATAAACAGG-TATCTTATTATTGATTT--GGGGT----GGG---T--TTGCAGGTTTA-----AA--TGCATA--T--TAAA-ACTAT-GTTC--GCC-----AGGCACGATTTACCTACTTTACCTATAT--CAAAATGCAGTGACCGTATCTCATTTGCATTCAAAT
finalCons : ATTTTTATTTACCTGAGAACCGTTGTAA-ACATAAACAGG-TATCTTATTATTGATTT--GGGGT----GGG---T--TTGCAGGTTTA-----AA--TGCATATTAAA------CTAT-GTTC--GCC-----AGGCACGATTTACCTACTTTACCTATAT--CAAAATGCAGTGACCGTATCTCATTTGCATTCAAAT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): GATTTTTTGTATCGTTTCAAAATGTTTACTATAATGTCGCACATTTTCATTTCAT
Unaligned ( gi|27 ): TCGACAGTCACAAAGTGAGAACATGTCCCAGTATTTGAACTTACACTTGACCTGA
Unaligned ( gi|29 ): GACACCATTGGGTTACTGTATTACAGCAAAATATGATGTCATTCAGG
Unaligned ( gi|31 ): CATATATACATAAGTATATATACGTCATAACGATA
Unaligned ( gi|32 ): TAATATAACAATATAGCATGTGGATATTCTTGTA
Alignments
lowQualScore : 44444444444444444444 33333333333333333
lowQualScore : 1 1 66666666666666666666 55555 22 0 44444444444444444 33 22
lowQualScore : . . .................... ..... .. . ................. .. ..
lowQualScore : 9 8 99999999999999999999 33333 99 1 88888888888888888 22 88
consensus : ATTTTTATTTACCTGAGAACCGTTGTAA-ACATAAACAGG-TATCTTATTATTGATTT--GGGGT----GGG---T--TTGCAGGTTTA-----AA--TGCATA--T--T---AA--A--CTA--TGTTCGCCAGGCACGATTTACCTACTTTACCTATAT--CAAAATGCAGTGACCGTATCTCATTTGCATTCAAAT
Reference ( family-4417 ) : ATTTTTATTTACCTGAGAACCGTTGTAA-ACATAAACAGG-TATCTTATTATTGATTT--GGGGT----GGG---T--TTGCAGGTTTA-----AA--TGCATA--T--T---AA--A--CTA--TGTTCGCCAGGCACGATTTACCTACTTTACCTATAT--CAAAATGCAGTGACCGTATCTCATTTGCATTCAAAT
gi|1 : --T--T---AA--ATACCA--TGTTCGCCCGGCACCATTAACCTACTTTACTTATAT--CCAAATATAGTGACGGCATCTGATTTACAGTGAAAT
gi|10 : actgaactaaatgcattttacatttatttttcgctttattactaatataaagATTTTTATTTACCTGAGAACCGTTGTTA-ACATAAACAGG-TATCTTATTATTGATTT-----GT----GGG---T--TTGCAGTTTTA-----AA--TGCAT--------------A--CTA--TGTCCGCCAGGCACG-------------ACTTATAT--CAGAATGCAGTGACCGTTTCTTATATGCATTCAAATttgaatcgactgtagcaatacaacataattgtgtaagtcataatcataaccacctactacctgattatatcggttccaaatatgt
gi|11 : tgATTTCTATTTACCTGAGAACCGTTGTAA-ACATAAACAGG-TATCTTATTATTGATTT---GGGT------G---T--TTGTAGATTTA-----AA--TGCACA--T--TTTAAA--A-----------CGCCAGGAACAATTTACCTACTTTCCGTATAT--CAAAATTCAGTGACCGTATCTCATTTGCATTGAAAttgaatcgactgtaa
gi|12 : gTTCTTATTTACCTGAGAACCGTTGTAA-ATATCAACAGG-TATCTTTTTATTGATTT--GAAG------GG---T--TTGT---TTTATTATTAA--TATATA--T--T---TA--A--TCAATTGTTTGCCAGGCACGATTAACCTACTTTACATATAT--CAAAATGCAGTGACCGTTTTTTATT
gi|13 : ggtTTTTATTTACCTGAGAACCGTTGTAA-ACATAATCATG-TATCTTA-----------------------G---C----GCATGTTTC-----AA--TGTATA----------------CTA--TGTTCGCCAGACACGATTTACATACCGTAACTATAT--CAAAATGCAGTGACCGTAATTCAATTGCATTCAAA
gi|14 : aATTTTTATTTAC-----AACCTTTGTGA-ACATAAACAGA-TATCTTATTTTTGATTT--TGGGT----A--------TTGCAGGCTTA-----AA--TGAATG----------------CTA--TGTTCGCCAGGCACGATTTATCTACTTTACCTATAT--TAAAAAGCAgttgaatcca
gi|15 : tgTTTATTTACCTGAAAACCATTGTAA-ACATAAACAGG-TATCTTATTATTAATTT-----GT----GGT---T--TTGCAGGTTTA-----AA--TGCATA-----T---AA--A--CAA-------------------------ACTTTACCTATAT--CAAAATACGGTAACAGTATCTCATTTGCATTCAAGTttcaaatttaaatcgactg
gi|16 : AGGGACGACATATCTACTTTACATATATATCAAA--GCAGTGACCGTATCTCATTTGCATTCAGATtttaatcga
gi|17 : attctatgggacgacaTTTTTATTTACCTGAGAACCGTTGTAA-ACATTAACAGG-TATCTAATTATTTATttgaaccgactgcaatacgttttgtttgtattattagaatacacgctttcattggataatgt
gi|17 : tttTA--TGTTCGCCAGGCATGATTTATCTACTTTACCTATAT--CAAAATGCAGTGACTGTATCTCATTTGCATTCAAATgttcgccaggcatgatttatctactttacctatatcaaaatgcagtgactgtatctcatttgcattcaaatttgattc
gi|18 : ttttttttatttacctgagaaccgttgtaaacattaacaggtatctaattattTGAGAACCGTTGTAA-ACATAA-CAGG-TAGCTTATTATTGAT----------------------------GTT-A-----AA--TACATA--TGAT---AA--A----A--TG----CCAGGCACGATTTGACTACTTTACCTATAT--CCAAATACAGTGACCGTATCTCATTTGCATTCAAATttgattc
gi|19 : TTTTTATTTACCTGAGAAC-----------ATAAACAGG-TTTCTTATTATTGATTT--TG-------GGG---A--TTGCAGGTTTA-----AATGTGTATG--T--T---AA--A--
gi|2 : tgttATTTTTATTTACCTGAGAACCGTTGTAA-ACATAAACAGG-TATCTTATTATTGAGTT--GGGGTTTGCAGG---T--TTGCAGGTTTG-----AA--TGTATAAGT--T---AA--AA-CTA--TGTTCGCCAGGCACGATTTGCCTACTTTACCTATAT--CAAAATGCAGTGACGGTATCTCATTTGCAATCAAATacttgatccaactttagaagtatttaacagtcatc
gi|20 : ATTTTTATTTACCTGAGAACCGTTGTAG-GCATAAACAGG-TATCTTATTATTGATTT--GG-------GGG---T--TTGCAGGTTTA-----AA--AGCAT--------------A--CTT--TGTCCGCCGGGCACGATTTCCGTACTTTAata
gi|21 : tgATTTTTATTTACCTAAGAACGGTTGTAA-CCATTACCAAG-TATC---TTGTTGATTT--GAGG-----GG-------TAGCAGGNNNN-----NN--NNNNCA--T--C---AA--
gi|22 : gATTTTTATTTATCTGAGTACCGAAGTAA-ACGTAAACAAG-TATCTTATTATTAATTT-----GC----GGG---A--TGGCAGGTTTA-----AA--TGCActtcaatagcaaa
gi|23 : aggtgTTTTATTTAACAGAGAACCGTTGTAA-ACATAAACAGG-TATCTCATTATTAATGT--GG-------GCG---T--TTGCAG
gi|24 : aggtgtgATTTTTATTTGCCTGAGAACCGCTGTAA-ACATAAACAGG-TATTTTATTATTGATTT--AG-------GGG---T--TTTCA
gi|25 : aggtgAGGCA-GATTTACCTGCTTTAC-TATAT--CAAAATGCAGTGACCGTATCTCATTTGCATTCAA
gi|28 : AGGCACGATTTACTTAAGTTACCTCTAT--CAAAATGCAGTGACT-TATCTCATTTtttt
gi|3 : TTTTTATTTACCTGAGAACTGTTGTAA-ACATAAACAGG-TATCTTATTATTGATTT--AGGG-------G---T--TTGCAGGTTTA-----GA--T-------T--T---AT--A--CTA--TGTTTGCCAGGCACAATTTACCAACTTTACCTATAT--CAAAATGCAGTGACCATATCTCATTTGCATTTAAATc
gi|30 : gt-TATCTTATTATTGATTT--GGGAT-------------TTGCAGGTTTA-----AA--TGCATA--ttgaatcgactg
gi|4 : ATTTGTATTTACCTGAGAACTGTTGGAA-ACATAAACAGG-TATCTTATTATTGATTT--TGGG-------G---T--TTGCAGATTAA-----AA--AG-GTA--T----------A--CTA--TGTTCGCCAGGCACGATTTACCTGCATTACCTTTAT--CAAAATGCAGTGACCGTATCTCATTTGCATTAAAAT
gi|5 : agatgATTTCTATTTACCTGCGAACCGTTGTAA-ACATAAATAGG-TATCTTATTATTAATTT--GGAG-------A---T--TTGCAGGTTTA-----AA--TGCATA--TGTT---AA--A--C---------GCCAGGCACGATTTACATTCTTTACATGTAT--CAAAAGGCAGTGACTGTATCTCATTTGCATTCAAATttgaatc
gi|6 : tgACTTGAGGATCGTTGTAA-ACATAAACAGGATCTCTTAAAACTGATTGCGGGGGT----GGGGGTTGGTTGCAGGTTTT-----AA--TGCATG----------------CTA--TGTACACCAGGCACGCTTTACCTACTTTACTTATAT--CAAAATGCAGTGAGATTATCTCATTTGCATTCCAATttgaatcga
gi|7 : ttacATTTTTGTTTACCTGAGAACCGTTGTAATAGA-AAACAGG-TATCTTATAATTGATTT--GGAGT---------------------TTA-----A---TATATAG-T--T---AATTA--CTA--TGTTTGCAAGGCACGATTTACATACTTTACCTATAT--AAAAATGCAGTGACGGTATCTCATTTGCATTTAAATtttaa
gi|8 : AGGCACAATTTACCTACTTTACCTATAT--CAAAATGCAGTGACCGTATCTCATTTGCACTCAAGTttgaatcgactg
gi|9 : gttaaaacttgatccaaccttagtATTTTTATTAAACTGAGAAATGTTGTAA-ACATAAAAAG---ATCTTATTAATAATTT--GGG-T----G-----T--TTGCAGGTTTA-----CA--TGCATG----------------CTA--TGTTCGCCAGGCACGATTTACCTACTTTACCTATAT--CAAAATACAGTGACCAAATCTCATTTGCATTCAAATttgaatcgactgtaaccagtcaacaacgacgatgttaaaagattcaccattaggtgaataattgcaacttgacatga
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): GATTTTTTGTATCGTTTCAAAATGTTTACTATAATGTCGCACATTTTCATTTCAT
Unaligned ( gi|27 ): TCGACAGTCACAAAGTGAGAACATGTCCCAGTATTTGAACTTACACTTGACCTGA
Unaligned ( gi|29 ): GACACCATTGGGTTACTGTATTACAGCAAAATATGATGTCATTCAGG
Unaligned ( gi|31 ): CATATATACATAAGTATATATACGTCATAACGATA
Unaligned ( gi|32 ): TAATATAACAATATAGCATGTGGATATTCTTGTA