lowQualScore : 111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 333333333333333333333333333333333 11 1 55555555555555555555 111 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 22222 1 1 0000000000000000000000000000000000000000000000000000000000000000000000000 333 1 222222 3333333333 111 333333333333333333333333 222222 222222 22222222222222222222 222222222 2222222222222222222 1111111111111 222222222222222222222222222222 333 111111
lowQualScore : 6 666666666666666666666666666666666 8 8 1 77 00 99 1 5 11111111111111111111 8 9 3 333 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 6 2 44444 0 99 5 1 1 1111111111111111111111111111111111111111111111111111111111111111111111111 33 000 1 333333 0000000000 66 2 2 2 77777 7 444 6 2 777777777777777777777777 000000 33 0 111111 99999999999999999999 22 99 22 2 2 555 2 555555555 9999999999999999999 22 9999999999999 2 888888888888888888888888888888 66 2 33 555 555555 6666 3 0 3
lowQualScore : . ................................. . . . .. .. .. . . .................... . . . ... .................................................................................................. . . ..... . .. . . . ......................................................................... .. ... . ...... .......... .. . . . ..... . ... . . ........................ ...... .. . ...... .................... .. .. .. . . ... . ......... ................... .. ............. . .............................. .. . .. ... ...... .... . . .
lowQualScore : 0 000000000000000000000000000000000 3 3 4 22 66 22 0 0 88888888888888888888 0 0 8 888 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 5 22222 5 22 0 2 4 7777777777777777777777777777777777777777777777777777777777777777777777777 55 888 0 000000 4444444444 55 9 7 7 99999 1 444 4 4 333333333333333333333333 444444 22 1 000000 22222222222222222222 99 55 88 0 1 111 0 222222222 7777777777777777777 99 7777777777777 0 666666666666666666666666666666 66 5 44 333 555555 7777 3 2 3
consensus : CAAAATAT----CGAATATGGCA-----AAAGACAATGACCCATGTGCACANCTGNTTTGAAAA--AGTGATATAGAGAATAA------CATTTTAAAANTGC-CATAAATA--ATCAAT----T-CAAAC-TGC-ACTGTTGGTTGTT-TAAANGG-TTACTTGAAAATTTAAATAGTTANAATATG-------------ATN------A----ANATGTTTGACCTGGACTCAGTAACAAATACACATACTTAGAGTCG-GAAACGAATCAGATCTGTCTGCGTTTAA---CGA--T---AAAAAATACGA-----GACTAAAATACT--TTGTTATTGTGACGGATGTGCAATAATTA------TTGCAAACCANTCGGTTTGTCG-TCTGTTTC-A-T---T-A-GAT--GTTTTNAA-GTN--TG-TG----------C----GTCTTA-----CGATACA--GACTAACTAA----TCTTGATCATCTTCG-A-CGC-TTGC----TT--TT-NT--A-A-AAGC-AA-GC-A--TC--GAAGATGATCAAGA-TN---A-GT---T---AGTC--TGTAT-------C--G-TAA-G-----------ACGC-A---CA--TATTTNAAAACATCTA-AATG-A--AAC-AGA---CN-GACC-G-TTT-ACAGGTA-GAAAT
Reference ( gi|1 ) : CAAAACATAGGGTGAATACGGTAGTTAGAAAAGCAA-GAAACTTGAGCACAGTTGATTTGAAAA--AATGATATAGCGAATCT------CATTT---ACATGC-CATAAATG--ATCAAT----TACAAA--TG--ATCGCTCCTTGTT-CAAAAGG-TTAAT-----ATTCAAATAGTTAAAA---G-------------ATA------A----AGTTGCTTGACCTGTAGTTAGCAACAAGTACCCATACTTAGAGTCA-ACAACAACTCAGATTCGTCGGTATTTAG---TGACATTA-AAAAAATACAA-----GACCAAAGTACT--TTGTTATTGTGATTGATGTGAAATAATTA------TTGCAATCCAATTTGTTTGTCA-TCTGTTTC-A-T---T-A-GAT--TTTTTTAA-GTT--TG-TG----------A----ATCTTA-----AGATACA--GACTAACTGG----TCTTGATCATCATCG-G-TGC-TTGC----AT--TT-CT--A-A-AAGC-AA-GC-A--CA--AAAGATGATCAAGA-TA---A-GT---T---AATC--TGTAT-------C--A-AAA-G-----------ACGC-A---CA--CATTTCAAAACATCTA-AATG-A--A---AGA---CT-GACC-A-CTT-ACAGGTA-GAAAT
gi|6 : CAAAATAT----CGAATATGGCA-----AAAGACAATGACCCATGTGCATACTTTTTTTTGAAA--AGTGATATAGAAAATAA------CATTTTAAAAGTGC-CATAAATA--ATCAAT----T-CAAA------ACTGTTG--TGTT---AATGG-TTATTTGAAAGTTTAAGTTGTTATAATATG-------------ATC------A----ACATGTTTGACCTGGACTCAGTAATAAATACATATACCTAGTGTAG-GAAATGAATCAGATCTGTCTGCAT
gi|7 : AAAATAT----CGAATATGGCA-----AAAGACAATGACCCATGTGCATACTTTTTTTTGAAA--AGTGATATAGAAAATAA------CATTTTAAAAGTGC-CATAAATA--ATCAAT----T-CAAA------ACTGTTG--TGTT---AATGG-TTATTTGAAAGTTTAAGTTGTTATAATATG-------------ATC------A----ACATGTTTGACCTGGACTCAGTAATAAATACATATACCTAGTGTAG-GAAATGAATCAGATCTGTCTGCATT
gi|3 : CTGGAGCACATATGGATTGAAGACGAA-GATACAAAGAATA-------CATTT---AACTGA-CAAATATGTAATCAGT----CTCAAACATGC-ATC--TGCTTGTGGCAAAGGT-TTACT-----AGCTAAATACTGAAAATT-GTATTTATTATATTGTA------A----AGATGTTTGAC-------TAA-AACAAA-ACACATGTTCAGAATCA------------GATT-ACC--TGTTTAA---CGA------AGAAAAT---------GACTAAGATTGT--TTGATATTATGGCGGATGTGTAATAATTA------TTGCAAACCA-----------G-TCTGTTTC-A-T---T-A-GAT--GCTTTAAA-GTT--TG-TA----------C----ATCTTA-----CGATACA--GACTAATTAC----TCTTGAACATC-TAGAA-CAC-TTGCTGTTAT--TT----------------------------GAGACAATCA---------------------GTC--TGTAT-------C--A-TAA-G-----------ACGC------------------AGATCTA-AATG-A--AAC-ATA---CA-TACC-A-TTT-ACAGGTA-
gi|2 : acCACAGCTGATCTGAAAA--AGTGACATAAAGAATcatgtagtatgttcccagacacatgcctttggctattttttttgagctaccatattgt
gi|5 : acctaaacCAAAGCTGCATTGAAAC--AGTAATATTGAGAATTG------TATTT----CA-AC-CACAA-TA--ATCAAT----TCCAAACTTGCAATTGATTGTTGTT-TAATAGGCTTTCT-----AT-CAAATA-CTGAAA---G--------------TATTTGTTACTTTAGTTGTTGGACCTGAAGCCAGCAACAAATATACATTTTTAGAGTTA-Aacaatagtaaactagaagactgtttgttattgtgacggatgtgaaacaattacatgtattacaacccattttgtatgctatctttttttataaaacatttttaagttaatataatcttacaatacaaaaactagtcttgatcattgtaaatgctttgttttctaaaagcaagcaagcatcaagaatgatcaagattacctagttggtctgtatttatctacaagatgcactgtgtatcatgcacacattttaaaacatcttaatgaaacagattgtttacaggtagaagtttgatttctgatgcatgagctttgtgcacataactggcttcaggccaatatgcagattttcttaaaataacatgcaaaacttatactgtttgtttaaactgcttggcaaaaacaaaaacatacttgtacaaatatttg
gi|17 : aagacctgctaTGAAAA--AATGATATAAATAATTTATAATACATTC---ACCTGTACA-AAGTA--ATCGATGCCAGACATA--TA--ACTGCTTGTTGTG-TAAACGT-TTACT-----ATTTCAATAaatgatcacgagaacgaaactttgttacggatgtgtaatacttattgcaaaccgt
gi|4 : tgaggtacatactgctaTCAGAGTCATACAACGAC--ATAATAGTC--CACTTAAAGCTGA--TTGTGACAAATATGA-----GA------TATT--GTGTTTTTGTGACAGATGTGCAATAGTTA------TTGC----CAGTCGGTTGGTCT-TAT---TC-A-T---TTA-GAT--ATTTTCAA-ATA--TA-TG----------A----GTCTTA-----TGATACA--GACTAA--------TCATGATCATCTTCG-A-CTC-TAGT-----T--TG-TT--A-A-AAAC-AA-AC-A--TA--------GATT-------------T---T---AATC--------------------AA-G-----------A----A---TA--TATAT--ATACATCTA-AATA-A--AAC-AGA---CA-GACC-A-TTT-ACTGATA-GTAAc
gi|2 : AG---TGACAT---AAAGAATACAATAGTAAACTAGAAGACTGTTTGTTATTGTGACGGATGTGAAACAATTACATGTATTACAACCCATTTTGTATGCTA-TCTTTTTTTA-T---A-A-AAC--ATTTTTAA-GTTAATA-T-----------A----ATCTTA-----CAATACA--AA--AACTAG----TCTTGATCATTGTAA-A-TGCTTTGT-----T--TT-CT--A-A-AAGC-AA-GC-AAGCATCAAGAATGATCAAGATTACCTA-GT---T---GGTC--TGTATTTATCTAC--A-AGATGCACTGTGTATCATGC-A---CA--CATTTTAAAACATCTT-AATG-A--A---ACA------GATT-G-TTT-ACAGGTA-GAAGTgtaccctgacgcatgcgcctggtctcggtcaggaagggaccatcta
gi|5 : acctaaaccacagctgatctgaaaaACGA-----GAACGAA--ACT--TTGTTAC---G---GATGTGTAATACTTA------TTGCAAACCttgatttctgatgcatgagctttgtgcacataactggcttcaggccaatatgcagattttcttaaaataacatgcaaaacttatactgtttgtttaaactgcttggcaaaaacaaaaacatacttgtacaaatatttg
gi|20 : aagacctgctacaaagctgcattgaaacagtaatattgagaattgtatttcaaccacaataatcaattccaaacttgcaattgattgttgtttaataggctttctatcaaatactgaaagtatttgttactttagttgttggacctgaagccagcaacaaatatacatttttagagttaaaatgatcGATGTGCAATGATTA------TTGCA----AACTGGTTTTTAA-TCTGTTTC-A-T---T-A-AAT--GTTgt
gi|9 : ttggggcaGTCAGTCTGTTTC-A-T---T-T-AGT--T--------GTC--TG-T------------------CTTA-----CAATAAT--GGCTGACCAA----TCTTGATTATCCCAG-A-TGT-TTGC----TT--TT-AG--A-A-AACC-AG-GTGA--CA--AAA-ATGATCAAGA-AT---C-GT---T---TGTC--TTCAT-------CATA-AAA-T-----------AAGC-A---AA--C---TTAAAACATCTA-aaa
gi|8 : TCG-TCTGTTTT-A-T---T-A-TATATTTTTTTAA-ATA--TA-TG----------C----GCCTTA-----CGATACA--GATTCACC-T----TTTTGATCATCTCCG-A-TGG-ATG-----AT--TT--T--A-G-AA---AATG----------AAGTTGA-CATAA-CT---A-GC---C---AGTC--TTAAT-------C--A-TAA-G-----------ACTCTA---AA--C------AAACGTCT--TATG-A--A---Acattttacaagtagaaagttccctgctggtagcattggccaggaaggtcatttgtaa
gi|13 : TCG-TCTGTTTT-A-T---T-AAGAT--ATTAATGA-GCT--T---------------------CTTG-----CGAAACA--GACTGATTTA----TCTTGATTGTCTCTA-A-TAC-TTTC----TT--TT-AT--A-A-atccttaacaggtatgaaaatccatgcgcatgcgcctgacatgtcgtcaggaaggaggtttcttaacaaa
gi|12 : CA-TTTGTTTC-ATT---T-A-AAT--GTTTTCAA-ATA--TG-GG----------C----GTCTTG-----CAATACAATGATTTGCTAA----TCTTGATtttacatgtagaaacttcccaaatgcacaactttaatgcatatgcttggcatttgggcagaatgtaaat
gi|19 : attggaaaatCG-TCTGCTGC-A-T---G-A-GAC--GTTTTAAA-GTG--TG-TG----------C----GTCTTT-----TGATACA--GACCAACgatcgcttacagatagaaagtgcactggtgcttacacattcgcctggcactttgcctggaagggaatatttaaaaa
gi|2 : gtaagtgtgacagatgtgcaataatA-TCTGTTTC-A-T---T-AAGAT--GTTTTAAA-ATG--TG-TGCATGATACACAGTGCATCTTGTAGATAAATACA--GACCAACTAGGTAATCTTGATCATTCTTG-A-TGC-TTGC----TTGCTT-TT--AGA-AAACAAA-GC-A--TT--TACAATGATCAAGA-CT---A-GT---T-----TT--TGTAT-------T--G-TAA-G-----------A
gi|11 : acctaaaccacagctgatctgaaaaagtgacataaagaatacaatagtaaactagaagactgtttgttattgtgacggatgtgaaacaattacatgtattacaacccattttgtatgctatctttttttataaaacatttttaagttaatataaA-TCTAATTC-A-T---TTA-AAT--GTTTACAA-ATA--GG-TA----------C----GTCCTA-----CTATATA--AACTA-CAGA----CATTTATCGTCTCCG-A-CGG-TTAC----AT--TT-GA--A-A-AAGC-AA-GC-G--CT--GAAGATGATCAAGA--A---T-GT---TTTAAAAA--TGTAT-------C--ATAAT-G-----------GCGC-AACCCATGTATTACAAAACtgtttacaggtagaagtttgatttctgatgcatgagctttgtgcacataactggcttcaggccaatatgcagattttcttaaaataacatgcaaaacttatactgtttgtttaaactgcttggcaaaaacaaaaacatacttgtacaaatatttg
gi|10 : tgtaactttct-TCTATTTT-A-TATTT-A--AT--GTTTTAAA-ATA--TG-TA----------C----AACTTA-----TGATAGA--GACCAAATAA----TCTTGATAATATTTT-A-TGC---GC----TT--TT-AG--A-A-AAAT-AA-GC-A--TC--AAGGAT
gi|14 : gt-TCTGTTTC-A-G-----A-GAT--GTTTTTAAAGTT--T---------------------TTTA-----TGATACA--GACTAATTCA----TTTTGATCATCTTTG-A-TGC-TTGctggactgtttacatgtaaaaatttcctgacaaatgcactttatgcttaatacttattactatagagaaatttcaaaacaaatttattataaaatc
gi|18 : -TCTGTTTG-A-T---T-AGGAT--GTTTTTAA-ATA--TGATG----------C----ATCTTA-----CGATTC-----CCA---------TCTTGATTGTC-TAG-GATGT-TTGC----TT--TT-AT--A-cagatcatttatcactagaaagttcattgagacacatgcctacccttcattctgcatgggaatatgtaaaagaag
gi|8 : cctggtgacTTTC-A-T---A-A-GAC--GTTT-----GTT--TA--G----------A----GTCTTA-----TGATTAA--GACTGGCTAG----TTATG----TCA-------AC-TT-C----AT--TTTCT--A-A-AATC-AT-CC-A--TC--GGAGATGATCAAAA--A---G-GT---G---AATC--TGTAT-------C--G-TAA-G-----------GCGC-A---TA--TATTTAAAAAAATATATAATA-A--AAC-AGA---CG-AATC---CTTAACAGGTATGAAAcagaccatttacacacagaatgt
gi|9 : ---T-A-GAT--GTTTT-AA-GTT--TG-CT----------T----ATTTTA-----TGATGAA--GACAAACGAT----TCTTGATCATTTTTG-T-CAC-CTGG----TT--TT-CT--A-A-AAGC-AA-AC-A--TC--TGGGATAATCAAGA-TT---G-GT---C---AGCC--ATTAT-------T--G-TAA-G-----------AC------------------AGACAACTA-AATG-A--AAC-AGA---CT-GACC-ATTTT-ACAAGTA-GAAAatccatgcgcatgcgcctgacatgtcgtcaggaaggaggtttcttaacaaa
gi|16 : -A-GAT--TTTTTC---GTT--TA-TA----------AGC--ATCTTA-----TAATACA--GACTGTCCAA----TCTTTATCATCTTTA-A-TGC-CTA-----AT--TT-TTAGA-A-AAAC-AA-gttccctgctggtagcattggccaggaaggtcatttgtaa
gi|3 : gTTTAG-ATC--TG-CG----------------TCTTA-----TGATACA--GACTGATTG-----TCTCAAATAACAGCAAG-TG--------------TT-CT--A------------------------GATGTTCAAGAGTA---A--T---T---AGTC--TGTAT-------C--G-TAA-G-----------ATGT-A---CA--AACTTTAAAGCATCT--AATG-A--AAC-AGA---CT-Gtaaacatttacaggtagaaaggtctcactactgtag
gi|4 : acctggagcacatatggattgaagacgaagatacaaagaatacatttaactgacaaatatgtaatcagtctcaaacatgcatctgcttgtggcaaaggtttactagctaaatactgaaaattgtatttattatattgtaaagatgtttgactaaaacaaaacacatgttcagaatcagattacctgtttaacgaagaaaatgactaagattgtttgatattatggcggatgtgtaataattattgcaaac----TCTTGATTAAAATCT-A-TGT-TTG------T--TT-TT--A-ACAAAC-TA-GA-G--TC--GAAGATGATCATGA-T-----------T---AGTC--TGTAT-------C--A-TAA-G-----------ACTC-A---TA--TATTTGAAAATATCTA-AATG-AATA---AGA---CC-AACCGA-CTtgaaacatacataccatttacaggtacatgtagtatgttcccagacacatgcctttggctattttttttgagctaccatattgt
gi|11 : tcagagtcatacaacgacataatagtccacttaaagctgattgtgacaaatatgagatattgtgtttttgtgacagatgtgcaatagttattgcc----TCTTGATCATCTTCA-G-CGC-TTGC----TT--TT-TC--A-A-ATGT-AA-CC-G--TC--GGAGACGAT--AAA-T------GTCTGT---AGTT--TATAT-------A--G-TAG-G-----------ACGT-A---CC--TATTTGTAAACATTTA-AATG-A--A---atatatatatacatctaaataaaacagacagaccatttactgatagtaagtaccctgacgcatgcgcctggtctcggtcaggaagggaccatcta
gi|10 : tgtaactttctatctaaATCCTTG-A-TGC-TTAT----TT--TT-CT--A-A-AAGC----GC-A--TA--AAATATTATCAAGA-TT---A-TT---T---GGTC--TCTAT-------C--A-TAA-G-----------TTGT-A---CA--TATTTTAAAACAT-TA-AATATA--AAATAGA---CTGGACT-G-TTT-ACATGTA-AAAATatgttttaaaaatgtatcataatggcgcaacccatgtattacaaaac
gi|16 : gt-TTGT----TT--TT-CT--A-A-AAATTAG-GC-A--TT--AAAGATGATAAAGA-TT---G-GA---C---AGTC--TGTAT-------T--A-TAA-G-----------ATGC-------------TTA-------TA-AACG-A--A---AAAATCTT-AAAC-A-TTT-ACAGGTA-GAAAttcctgacaaatgcactttatgcttaatacttattactatagagaaatttcaaaacaaatttattataaaatc
gi|13 : g--TT-AT--A-A-AAGA-AA-GT-A--TT--AGAGACAATCAAGA-TA---A-AT---C---AGTC--TGTTT-------C--G-CAA-G-----------AAG------CT--CATT----AATATCTT-AATA-A--A---ACA------GACG-A-TTT-ACATGTA-GAAAggtctcactactgtag
gi|18 : T--A-A-AAGC-AA-AC-A--TC--CTAGACAATCAAGA-TG---G-G--------AATC---GT---------------AA-G-----------ATGC-AT--CA--TATTTAAAAACATCCT-AATC-A--AAC-AGA---CA-GACC-A-TTT-ACACACA-GAActtcccaaatgcacaactttaatgcatatgcttggcatttgggcagaatgtaaat
gi|19 : cctggtgactaGT-AA-GT-G--TG--ACAGATGTGCAA---TA---ATGT---T---GGTC--TGTAT-------C--A-AAA-G-----------ACGC-A---CA--CACTTTAAAACGTCTtgt
gi|14 : C-AA-GC-A--TC--AAAGATGATCAAAA-TG---A-AT---T---AGTC--TGTAT-------CATA-AAA-A-----------AC-------------TTTAAAAACATCT---CTG-A--AAC-AGA---CA-GATC-A-TTT-ATCACTA-GAAAcatgcagcagacg
gi|12 : AAAAT-ATCAAGA-TT---A-GC---A---AATCATTGTAT-------T--G-CAA-G-----------ACGC-C---CA--TATTTGAAAACATTTA-AATG-A--AAC-AAA---TG-GATC-G-CTT-ACAGATA-GAAAgttcattgagacacatgcctacccttcattctgcatgggaatatgtaaaagaag
gi|21 : attggT-------C--A-TAA-A-----------ATGC-A---TT--TATTTTAAAACATTTA-AATG-A--AAC-AGA---CA-GACC-A-TTT-ACTAACA-GAAgtgcactggtgcttacacattcgcctggcactttgcctggaagggaatatttaaaaa
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): CTCTATAATACAAACGCCGAAATAATCTAGATTGCTTTGCCTGTATTGTCAGAAAGAACATACGGATATGTTATGAAGTAGAAAGTTCCCCCGATGCATTTGCCTGTCATTCGGTCAAGGA
Alignments
lowQualScore : 2222 33333 11111 222222 111 111 555555555 11 11 555555555555555 11 1111 33333333 11 444444444444444444444444444444 11 111111 4444444444444444444 11111 1111 111111111 2222222222222222222
lowQualScore : 8888 33333 7 66 8 0 77 1 5 77 88888 999999 6 000 4 333 6 555555555 2 77 77 6 1 2 666666666666666 4 1 0 11 3 1 7777 22 3 5 1 0 1 11111111 77 0 77 999999999999999999999999999999 11 6 4 666666 66 2222222222222222222 5 5 4 7 777 0 5 4 1 66 00000 4 7 4 55 0 5 1 0000 0 888 2 555555555 44 2222222222222222222 2 88 1 6 66 33 77 6666 3
lowQualScore : .... ..... . .. . . .. . . .. ..... ...... . ... . ... . ......... . .. .. . . . ............... . . . .. . . .... .. . . . . . ........ .. . .. .............................. .. . . ...... .. ................... . . . . ... . . . . .. ..... . . . .. . . . .... . ... . ......... .. ................... . .. . . .. .. .. .... .
lowQualScore : 3333 33333 3 00 0 4 00 0 7 99 11111 555555 7 888 2 555 7 333333333 8 55 00 7 0 5 333333333333333 2 0 8 00 8 0 0000 44 2 0 8 8 4 22222222 00 6 88 444444444444444444444444444444 00 0 0 444444 44 2222222222222222222 0 0 4 6 999 8 7 4 7 11 66666 6 3 0 33 9 7 0 4444 2 777 6 666666666 22 1111111111111111111 9 00 6 8 44 99 66 9999 1
consensus : CAAAATAT----CGAATACGGCA-----AAAGACAATGACCCATG-TGCACANCTGNTTTGAAAAAGT-GATATAGAGAA--TA----ACATTTTAAAANTGC-CA--TAAATAATCAAT-T-C-AAAC-T-GC-A-CTGCTTGTTGTTTAA-ANGNTTACT----------TGAAAATTTAAGTAGTTATAATA--TGATNA----AGATGTTTGACCTGGANTCAGCAACAAATACACATACTTAGAGTNGGAAACGAATCAGATCTGTCTGCATTTAACGANA----AAAAATACGA-----GACTAAAATACT--TTGTTATTGTGGCGGATGTGNAATAATTA------TTGCAAACCA-TTTGTTTGT--------CGTCTGTTTC-A-TT-AGACGTTTTNAAGTT--TGTGCGTC-TTACGATACA--GACT---AACTANTCTTGATCATCT-TCGACGCTTGCTTTTCTAAAAGC----AAGCATCGAAGACGATCAAGAT----NAGTTAGTC--TGTAT-------------------CGTAAGACGCA-CATATTTNAAAACATCTA-A--ATGAAACAGAC-GGACCG-TTTACAGGTA-GAAAT
Reference ( family-4406 ) : CAAAATAT----CGAATATGGCA-----AAAGACAATGACCCATG-TGCACANCTGNTTTGAAAAAGT-GATATAGAGAA--TA----ACATTTTAAAANTGC-CA--TAAATAATCAAT-T-C-AAAC-T-GC-A-CTGTTGGTTGTTTAA-ANGGTTACT----------TGAAAATTTAAATAGTTANAATA--TGATNA----ANATGTTTGACCTGGACTCAGTAACAAATACACATACTTAGAGTCGGAAACGAATCAGATCTGTCTGCGTTTAACGATA----AAAAATACGA-----GACTAAAATACT--TTGTTATTGTGACGGATGTGCAATAATTA------TTGCAAACCANTCGGTTTGT--------CGTCTGTTTC-A-TT-AGATGTTTTNAAGTN--TGTGCGTC-TTACGATACA--GACT---AACTAATCTTGATCATCT-TCGACGCTTGCTTTTNTAAAAGC----AAGCATCGAAGATGATCAAGAT----NAGTTAGTC--TGTAT-------------------CGTAAGACGCA-CATATTTNAAAACATCTA-A--ATGAAACAGAC-NGACCG-TTTACAGGTA-GAAAT
gi|1 : CAAAACATAGGGTGAATACGGTAGTTAGAAAAGCAA-GAAACTTG-AGCACAGTTGATTTGAAAAAAT-GATATAGCGAA--TC----TCATTT---ACATGC-CA--TAAATGATCAAT-TAC-AAA--T-G--A-TCGCTCCTTGTTCAA-AAGGTTAAT---------------ATTCAAATAGTTAAAA-----GATAA----AGTTGCTTGACCTGTAGTTAGCAACAAGTACCCATACTTAGAGTCAACAACAACTCAGATTCGTCGGTATTTAGTGACATTAAAAAAATACAA-----GACCAAAGTACT--TTGTTATTGTGATTGATGTGAAATAATTA------TTGCAATCCAATTTGTTTGT--------CATCTGTTTC-A-TT-AGATTTTTTTAAGTT--TGTGAATC-TTAAGATACA--GACT---AACTGGTCTTGATCATCA-TCGGTGCTTGCATTTCTAAAAGC----AAGCACAAAAGATGATCAAGAT----AAGTTAATC--TGTAT-------------------CAAAAGACGCA-CACATTTCAAAACATCTA-A--ATGAA--AGAC-TGACCA-CTTACAGGTA-GAAAT
gi|10 : ATCC-TTGATGCTTATTTTTCTAAAAGC------GCATAAAATATTATCAAGAT----TATTTGGTC--TCTAT-------------------CATAAGTTGTA-CATATTTTAAAACAT-TA-AATATAAAATAGACTGGACTG-TTTACATGTA-AAAAT
gi|11 : gtTGCGCCATTATGATACA--TTTTTAAAAC-ATTCTTGATCATCT-TCAGCGCTTGCTTTTTCAAATGT----AACCGTCGGAGACGATAAATGT----CTG-TAGTT--TATAT-------------------AGTAGGACGTA-CCTATTTGTAAACATTTA-A--ATGAATTAGAT-AGAAAG--TTACAttcctgacaaatgcactttatgcttaatacttattactatagagaaatttcaaaacaaatttattataaaatc
gi|12 : GAAAAT-ATCAAGAT----TAGCAAATCATTGTAT-------------------TGCAAGACGCC-CATATTTGAAAACATTTA-A--ATGAAACAAAT-GGATCG-CTTACAGATA-GAAAacccatgtattacaaaac
gi|12 : attgGGCGAATGTGTAAGCACCA------GTGCA---CTTTCTATCTGTAAGCGATCCATTTGTTTC-A-TTTAAATGTTTTCAAATA--TGGGCGTC-TTGCAATACAATGATT---TGCTAATCTTGAT-ATTT-TCgtgcactggtgcttacacattcgcctggcactttgcctggaagggaatatttaaaaa
gi|13 : attgTTATAAAAGA----AAGTATTAGAGACAATCAAGAT----AAATCAGTC--TGTTT-------------------CGCAAGAAGCT-CAT-T-----AATATCTT-A--ATAAAACAGAC--GA----TTTACATGTA-GAAAtggcactttgcctggaagggaatatttaaaaa
gi|14 : C----AAGCATCAAAGATGATCAAAAT----GAATTAGTC--TGTAT-------------------CATAAAAAAC------TTTAAAAACATCT-----CTGAAACAGAC-AGATCA-TTTATCACTA-GAAActtcccaaatgcacaactttaatgcatatgcttggcatttgggcagaatgtaaat
gi|16 : TTGTTTTTCTAAAAATT---AGGCATTAAAGATGATAAAGAT----TGGACAGTC--TGTAT-------------------TATAAGATGCT-TATAAACGAAAAAATCT------T-AAACA-----------TTTACAGGTA-GAAAgttcattgagacacatgcctacccttcattctgcatgggaatatgtaaaagaag
gi|17 : gG-TACATA-CTGCTATGAAAAAAT-GATATAAATAATTTATAATACATTC---ACCTGTACA---AAGTAATCGATGC-C-AGACAT-ATAA-CTGCTTGTTGTGTAA-ACGTTTACT---------------ATTTCAATAggtctcactactgtag
gi|18 : tgagTATAAAAGC----AAACATCCTAGACAATCAAGAT----GGG--A--------AT-------------------CGTAAGATGCATCATATTTAAAAACATCCT-A--ATCAAACAGAC-AGACCA-TTTACACACA-GAAc
gi|19 : cctggtgac--------CGTCTGCTGC-A-TG-AGACGTTTTAAAGTG--TGTGCGTC-TTTTGATACA--GACC---AAC-ATTATTGCACATCTGTC-ACACTTACtgt
gi|2 : CACAGCTGATCTGAAAAAGT-GACATAAAGAA--TA----
gi|2 : acctaaacATA----AAGAATACAATAGTAAACTAGAAGACTGTTTGTTATTGTGACGGATGTGAAACAATTACATGTATTACAACCCATTTTGTATGC--------TATCTTTTTTTA-TA-AAACATTTTTAAGTTAATATA-ATC-TTACAATACA--AA-----AACTAGTCTTGATCATTG-TAAATGCTTTGTTTTCTAAAAGCAAGCAAGCATCAAGAATGATCAAGATTACCTAGTTGGTC--TGTATTTATCTACAAGATGCACTGTGTATCATGCA-CACATTTTAAAACATCTT-A--ATGAAACAGAT-T----G-TTTACAGGTA-GAAGTcaatagtaaactagaagactgtttgttattgtgacggatgtgaaacaattacatgtattacaacccattttgtatgctatctttttttataaaacatttttaagttaatataatcttacaatacaaaaactagtcttgatcattgtaaatgctttgttttctaaaagcaagcaagcatcaagaatgatcaagattacctagttggtctgtatttatctacaagatgcactgtgtatcatgcacacattttaaaacatcttaatgaaacagattgtttacaggtagaagtttgatttctgatgcatgagctttgtgcacataactggcttcaggccaatatgcagattttcttaaaataacatgcaaaacttatactgtttgtttaaactgcttggcaaaaacaaaaacatacttgtacaaatatttg
gi|20 : acctaaaccacagctgatctgaaaaagtgacTTGGGGCAGATGTGCAATGATTA------TTGCAAAC----TGGTTTTT--------AATCTGTTTC-A-TT-AAATGTTttgatttctgatgcatgagctttgtgcacataactggcttcaggccaatatgcagattttcttaaaataacatgcaaaacttatactgtttgtttaaactgcttggcaaaaacaaaaacatacttgtacaaatatttg
gi|21 : T-------------------CATAAAATGCA-TTTATTTTAAAACATTTA-A--ATGAAACAGAC-AGACCA-TTTACTAACA-GAAaaa
gi|3 : GCACATATGGATTGAAGACGAAGATACAAAGAA--TA-----CATTT---AACTGA-CAAATATGTAATCAGTCT-C-AAACAT-GC-ATCTGCTTGTGGC--AA-AGGTTTACTAGCTAAATACTGAAAATT---GTATTTATTATA--TTGTAA----AGATGTTTGAC------TAA--AACAAA-ACACATGTTCAGA-----------ATCAGAT-TACCTG--TTTAACGA-A----GAAAAT---------GACTAAGATTGT--TTGATATTATGGCGGATGTGTAATAATTA------TTGCAAACCA-------------------GTCTGTTTC-A-TT-AGATGCTTTAAAGTT--TGTACATC-TTACGATACA--GACT---AATTACTCTTGAACATCT-AGAACACTTGCTGTTAT---------------TTG-AGACAATC--------------AGTC--TGTAT-------------------CATAAGACGC-------------AGATCTA-A--ATGAAACATAC-ATACCA-TTTACAGGTA-
gi|4 : acctggaAAATATGA-----GA------TATT--GTGTTTTTGTGACAGATGTGCAATAGTTA------TTG----CCAGTCGG-TTG----------GTCTTATTC-ATTT-AGATATTTTCAAATA--TATGAGTC-TTATGATACA--G-------ACTAATCATGATCATCT-TCGACTCTAG-TTTGTTAAAAAC----AAACAT------------AGAT----T--TTAATC-----------------------------AAGA---A-TATATAT--ATACATCTA-A--ATAAAACAGAC-AGACCA-TTTACTGATA-GTAAcatgtagtatgttcccagacacatgcctttggctattttttttgagctaccatattgt
gi|5 : tcagagtcatacaacgacataatagtccacttaaagctgattgtgacGACC--TGCTACAAAGCTGCATTGAAACAGT-AATATTGAGAA--TT----GTATTTCAA-----C-CA--CAA-TAATCAAT-T-CCAAAC-TTGC-AATTGATTGTTGTTTAATAGGCTTTCT------------A----TCAAATACTGAAAGTATTTG-TTACTTTAGTTGTTGGACCTGAAGCCAGCAACAAATATACATTTTTAGAGTT--AA---AAT--GATC------------ACGAGA----------ACGA-----A--------ACT--TTGTT------ACGGATGTGTAATACTTA------TTGCAAACCgtaccctgacgcatgcgcctggtctcggtcaggaagggaccatcta
gi|6 : aaCAAAATAT----CGAATATGGCA-----AAAGACAATGACCCATG-TGCATACTTTTTTTTGAAAAGT-GATATAGAAAA--TA----ACATTTTAAAAGTGC-CA--TAAATAATCAAT-T-C-AAA-------A-CTGTTG--TGTT--A-ATGGTTATT----------TGAAAGTTTAAGTTGTTATAATA--TGATCA----ACATGTTTGACCTGGACTCAGTAATAAATACATATACCTAGTGTAGGAAATGAATCAGATCTGTCTGCATgt
gi|7 : AAAATAT----CGAATATGGCA-----AAAGACAATGACCCATG-TGCATACTTTTTTTTGAAAAGT-GATATAGAAAA--TA----ACATTTTAAAAGTGC-CA--TAAATAATCAAT-T-C-AAA-------A-CTGTTG--TGTT--A-ATGGTTATT----------TGAAAGTTTAAGTTGTTATAATA--TGATCA----ACATGTTTGACCTGGACTCAGTAATAAATACATATACCTAGTGTAGGAAATGAATCAGATCTGTCTGCATT
gi|8 : TTTC-A-TA-AGACGTTT----GTT--TA-GAGTC-TTATGATTAA--GACT---GGCTAGTTATG-TCAACT-TCA--------TTTTCTAAAATC----ATCCATCGGAGATGATCAAAA-----AGGTGAATC--TGTAT-------------------CGTAAGGCGCA-TATATTTAAAAAAATATATA--ATAAAACAGAC-GAATCC-TTAACAGGTATGAAA
gi|9 : T-AGATGTTTT-AAGTT--TGCTTATT-TTATGATGAA--GACA---AACGATTCTTGATCATTT-TTGTCACCTGGTTTTCTAAAAGC----AAACATCTGGGATAATCAAGAT----TGGTCAGCC--ATTAT-------------------TGTAAGAC-------------AGACAACTA-A--ATGAAACAGAC-TGACCATTTTACAAGTA-GAAAatccatgcgcatgcgcctgacatgtcgtcaggaaggaggtttcttaacaaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CTCTATAATACAAACGCCGAAATAATCTAGATTGCTTTGCCTGTATTGTCAGAAAGAACATACGGATATGTTATGAAGTAGAAAGTTCCCCCGATGCATTTGCCTGTCATTCGGTCAAGGA
Alignments
lowQualScore : 2222 33333 22222222 222222 111 111 55555555 1 11 33333333333 11 22222222 444444444444444444444444444444 11 111111 333333333333333333333 111 111111111 2222222222222222222
lowQualScore : 8888 0 33333 7 66 8 0 77 1 5 44444444 999999 6 000 4 333 6 55555555 0 7 77 6 1 1 66666666666 8 66 1 6 0 5 1 1 3 3 1 0 1 66666666 77 0 88 777777777777777777777777777777 11 0 1 666666 66 666666666666666666666 5 8 0 7 777 0 5 4 1 66 777 7 2 4 55 0 5 0 7777 3 0 000 1 555555555 44 2222222222222222222 2 88 1 6 66 33 0 66 55 3
lowQualScore : .... . ..... . .. . . .. . . ........ ...... . ... . ... . ........ . . .. . . . ........... . .. . . . . . . . . . . . ........ .. . .. .............................. .. . . ...... .. ..................... . . . . ... . . . . .. ... . . . .. . . . .... . . ... . ......... .. ................... . .. . . .. .. . .. .. .
lowQualScore : 3333 7 33333 3 00 0 4 00 0 7 11111111 555555 7 888 2 555 7 33333333 8 3 00 7 0 0 66666666666 0 66 4 0 8 0 0 4 2 8 4 8 4 88888888 00 6 88 222222222222222222222222222222 00 4 0 444444 44 999999999999999999999 0 9 7 6 444 8 7 4 7 11 888 2 6 0 33 9 7 7 7777 3 2 111 4 666666666 22 1111111111111111111 9 00 6 8 44 99 1 99 66 1
consensus : CAAAATAT----CGAATACGGCA-----AAAGACAATGACCCATG-TGCACANCTGNTTTGAAAAAGT-GATATAGAGAAT-----A-ACATTTTAAAANTGC-CA--TAAATAATCAAT-T-C-AAAC-T-GCA-CTGCTTGTTGTTTAA-ANGNTTACT----------TGAAA-ATTT-AAGTAGTTATAATATGATNAAGATGTTTGACCTGGANTCAGCAACAAATACACATACTTAGAGTNGGAAACGAATCAGATCTGTCTGCATTTAACGANA----AAAAATACGA-----GACTAAAATACT--TTGTTATTGTGGCGGATGTGNAATAATTA------TTGCAAACCA-TTT-GTTTGT--------CGTCTGTTTC-ATT-AGACGTTTTNAAGTT--TGTGCGTC-TTACGATACA--GACT---AACTANTCTTGATCATCT-TCGACGCTTGCTTTTCTAAA----AGC-AAGCATCAGAGACGATCAAGAT----NAGTTAGTC--TGTAT-------------------CGTAAGACGCA-CATATTTNAAAACATCTA-A--ATGAAACAGAC-GGACCG-TTTACAGGTA-GAAAT
Reference ( family-4406 ) : CAAAATAT----CGAATACGGCA-----AAAGACAATGACCCATG-TGCACANCTGNTTTGAAAAAGT-GATATAGAGAAT-----A-ACATTTTAAAANTGC-CA--TAAATAATCAAT-T-C-AAAC-T-GCA-CTGCTTGTTGTTTAA-ANGNTTACT----------TGAAA-ATTT-AAGTAGTTATAATATGATNAAGATGTTTGACCTGGANTCAGCAACAAATACACATACTTAGAGTNGGAAACGAATCAGATCTGTCTGCATTTAACGANA----AAAAATACGA-----GACTAAAATACT--TTGTTATTGTGGCGGATGTGNAATAATTA------TTGCAAACCA-TTT-GTTTGT--------CGTCTGTTTC-ATT-AGACGTTTTNAAGTT--TGTGCGTC-TTACGATACA--GACT---AACTANTCTTGATCATCT-TCGACGCTTGCTTTTCTAAA----AGC-AAGCATCGAAGACGATCAAGAT----NAGTTAGTC--TGTAT-------------------CGTAAGACGCA-CATATTTNAAAACATCTA-A--ATGAAACAGAC-GGACCG-TTTACAGGTA-GAAAT
gi|1 : CAAAACATAGGGTGAATACGGTAGTTAGAAAAGCAA-GAAACTTG-AGCACAGTTGATTTGAAAAAAT-GATATAGCGAAT-----C-TCATTT---ACATGC-CA--TAAATGATCAAT-TAC-AAA--T-G-A-TCGCTCCTTGTTCAA-AAGGTTAAT----------------ATTC-AAATAGTTAAAA---GATAAAGTTGCTTGACCTGTAGTTAGCAACAAGTACCCATACTTAGAGTCAACAACAACTCAGATTCGTCGGTATTTAGTGACATTAAAAAAATACAA-----GACCAAAGTACT--TTGTTATTGTGATTGATGTGAAATAATTA------TTGCAATCCAATTT-GTTTGT--------CATCTGTTTC-ATT-AGATTTTTTTAAGTT--TGTGAATC-TTAAGATACA--GACT---AACTGGTCTTGATCATCA-TCGGTGCTTGCATTTCTAAA----AGC-AAGCACAAAAGATGATCAAGAT----AAGTTAATC--TGTAT-------------------CAAAAGACGCA-CACATTTCAAAACATCTA-A--ATGAA--AGAC-TGACCA-CTTACAGGTA-GAAAT
gi|10 : ATCC-TTGATGCTTATTTTTCTAAA----AGC---GCATAAAATATTATCAAGAT----TATTTGGTC--TCTAT-------------------CATAAGTTGTA-CATATTTTAAAACAT-TA-AATATAAAATAGACTGGACTG-TTTACATGTA-AAAAT
gi|11 : gtTGCGCCATTATGATACA--TTTTTAAAAC-ATTCTTGATCATCT-TCAGCGCTTGCTTTTTCAAA----TGT-AACCGTCGGAGACGATAAATGT----CTG-TAGTT--TATAT-------------------AGTAGGACGTA-CCTATTTGTAAACATTTA-A--ATGAATTAGAT-AGAAAG--TTACAttcctgacaaatgcactttatgcttaatacttattactatagagaaatttcaaaacaaatttattataaaatc
gi|12 : GGCGAATGTGTAAGCACCA------GTGCA--CTT-TCT-ATCTGTAAGCGATCCATTTGTTTC-ATTTAAATGTTTTCAAATA--TGGGCGTC-TTGCAATACAATGATT---TGCTAATCTTGAT-ATTT-TCacccatgtattacaaaac
gi|12 : attgATCAAGAT----TAGCAAATCATTGTAT-------------------TGCAAGACGCC-CATATTTGAAAACATTTA-A--ATGAAACAAAT-GGATCG-CTTACAGATA-GAAAtggcactttgcctggaagggaatatttaaaaa
gi|13 : attggaaaatTTATAAA----AGA-AAGTATTAGAGACAATCAAGAT----AAATCAGTC--TGTTT-------------------CGCAAGAAGCT-CAT-T-----AATATCTT-A--ATAAAACAGAC-G----A-TTTACATGTA-GAAAgtgcactggtgcttacacattcgcctggcactttgcctggaagggaatatttaaaaa
gi|14 : C-AAGCATCAAAGATGATCAAAAT----GAATTAGTC--TGTAT-------------------CATAAAAAAC------TTTAAAAACATCT-----CTGAAACAGAC-AGATCA-TTTATCACTA-GAAActtcccaaatgcacaactttaatgcatatgcttggcatttgggcagaatgtaaat
gi|16 : TTGTTTTTCTAAA----AATTAGGCATTAAAGATGATAAAGAT----TGGACAGTC--TGTAT-------------------TATAAGATGCT-TATAAACGAAAAAATCT------T-AAACA-----------TTTACAGGTA-GAAAgttcattgagacacatgcctacccttcattctgcatgggaatatgtaaaagaag
gi|17 : gG-TACATA-CTGCTATGAAAAAAT-GATATAAATAATTTATAATACATTC---ACCTGTACA---AAGTAATCGATGC-C-AGACAT-ATAACTGCTTGTTGTGTAA-ACGTTTACT----------ggtctcactactgtag
gi|18 : tgagTAAA----AGC-AAACATCCTAGACAATCAAGAT----GGG--A--------AT-------------------CGTAAGATGCATCATATTTAAAAACATCCT-A--ATCAAACAGAC-AGACCA-TTTACACACA-GAAatttcaatac
gi|19 : cctggtgacta--------CGTCTGCTGC-ATG-AGACGTTTTAAAGTG--TGTGCGTC-TTTTGATACA--GACC---AAC-ATTATTGCACATCTGTC-ACACTTACtgt
gi|2 : CACAGCTGATCTGAAAAAGT-GACATAAAGAAT-----A-
gi|2 : acctaaacATA----AAGAATACAATAGTAAACTAGAAGACTGTTTGTTATTGTGACGGATGTGAAACAATTACATGTATTACAACCCA-TTTTGTATGC--------TATCTTTTTTTATA-AAACATTTTTAAGTTAATATA-ATC-TTACAATACA--AA-----AACTAGTCTTGATCATTG-TAAATGCTTTGTTTTCTAAAAGCAAGC-AAGCATCAAGAATGATCAAGATTACCTAGTTGGTC--TGTATTTATCTACAAGATGCACTGTGTATCATGCA-CACATTTTAAAACATCTT-A--ATGAAACA-----GATTG-TTTACAGGTA-GAAGTcaatagtaaactagaagactgtttgttattgtgacggatgtgaaacaattacatgtattacaacccattttgtatgctatctttttttataaaacatttttaagttaatataatcttacaatacaaaaactagtcttgatcattgtaaatgctttgttttctaaaagcaagcaagcatcaagaatgatcaagattacctagttggtctgtatttatctacaagatgcactgtgtatcatgcacacattttaaaacatcttaatgaaacagattgtttacaggtagaagtttgatttctgatgcatgagctttgtgcacataactggcttcaggccaatatgcagattttcttaaaataacatgcaaaacttatactgtttgtttaaactgcttggcaaaaacaaaaacatacttgtacaaatatttg
gi|20 : acctaaaccacagctgatctgaaaaagtgacTTGGGGCAGATGTGCAATGATTA------TTGCAAAC----TG-GTTTTT--------AATCTGTTTC-ATT-AAATGTTttgatttctgatgcatgagctttgtgcacataactggcttcaggccaatatgcagattttcttaaaataacatgcaaaacttatactgtttgtttaaactgcttggcaaaaacaaaaacatacttgtacaaatatttg
gi|21 : T-------------------CATAAAATGCA-TTTATTTTAAAACATTTA-A--ATGAAACAGAC-AGACCA-TTTACTAACA-GAAaaa
gi|3 : GCACATATGGATTGAAGACGAAGATACAAAGAAT-----A--CATTT---AACTGA-CAAATATGTAATCAGTCT-C-AAACAT-GCATCTGCTTGTGGC--AA-AGGTTTACTAGCTAAATACTGAAA-ATT----GTATTTATTATATTGTAAAGATGTTTGAC------TAA--AACAAA-ACACATGTTCAGA-----------ATCAGAT-TACCTG--TTTAACGA-A----GAAAAT---------GACTAAGATTGT--TTGATATTATGGCGGATGTGTAATAATTA------TTGCAAACCA--------------------GTCTGTTTC-ATT-AGATGCTTTAAAGTT--TGTACATC-TTACGATACA--GACT---AATTACTCTTGAACATCT-AGAACACTTGCTGTT-----------------ATTTGAGACAATC--------------AGTC--TGTAT-------------------CATAAGACGC-------------AGATCTA-A--ATGAAACATAC-ATACCA-TTTACAGGTA-
gi|4 : acctggaAAATATGA-----GA------TATT--GTGTTTTTGTGACAGATGTGCAATAGTTA------TTGC----CA-GTC-GGTTG----------GTCTTATTC-ATTTAGATATTTTCAAATA--TATGAGTC-TTATGATACA--GACT---AA----TCATGATCATCT-TCGACTCTAG-TTTGTTAAA----AAC-AAACAT------------AGAT----T--TTAATC-----------------------------AAGA---A-TATATAT--ATACATCTA-A--ATAAAACAGAC-AGACCA-TTTACTGATA-GTAAcatgtagtatgttcccagacacatgcctttggctattttttttgagctaccatattgt
gi|5 : tcagagtcatacaacgacataatagtccacttaaagctgattgtgacGACC--TGCTACAAAGCTGCATTGAAACAGT-AATATTGAGAAT-----T-GTATTTCAA-----C-CA--CAA-TAATCAAT-T-CCAAAC-TTGCAATTGATTGTTGTTTAATAGGCTTTCTA---------TCAAATACTGAAAGTATTTGT--TAC--TTTAGTTGTTGGACCTGAAGCCAGCAACAAATATACATTTTTAGAGTT--AA---AAT--GATC------------ACGAGA----------ACGA-----A--------ACT--TTGTTA------CGGATGTGTAATACTTA------TTGCAAACCG-Tgtaccctgacgcatgcgcctggtctcggtcaggaagggaccatcta
gi|6 : aaCAAAATAT----CGAATATGGCA-----AAAGACAATGACCCATG-TGCATACTTTTTTTTGAAAAGT-GATATAGAAAAT-----A-ACATTTTAAAAGTGC-CA--TAAATAATCAAT-T-C-AAA------A-CTG-TTG-TGTT--A-ATGGTTATT----------TGAAA-GTTT-AAGTTGTTATAATATGATCAACATGTTTGACCTGGACTCAGTAATAAATACATATACCTAGTGTAGGAAATGAATCAGATCTGTCTGCAT
gi|7 : AAAATAT----CGAATATGGCA-----AAAGACAATGACCCATG-TGCATACTTTTTTTTGAAAAGT-GATATAGAAAAT-----A-ACATTTTAAAAGTGC-CA--TAAATAATCAAT-T-C-AAA------A-CTG-TTG-TGTT--A-ATGGTTATT----------TGAAA-GTTT-AAGTTGTTATAATATGATCAACATGTTTGACCTGGACTCAGTAATAAATACATATACCTAGTGTAGGAAATGAATCAGATCTGTCTGCATT
gi|8 : TTTC-ATA-AGACGTTT----GTT--TA-GAGTC-TTATGATTAA--GACT---GGCTAGTTATG-TCAACT-TCA--------TTTTCTAAA----ATC-ATCCATCGGAGATGATCAAAA-----AGGTGAATC--TGTAT-------------------CGTAAGGCGCA-TATATTTAAAAAAATATATA--ATAAAACAGAC-GAATCC-TTAACAGGTATGAAA
gi|9 : T-AGATGTTTT-AAGTT--TGCTTATT-TTATGATGAA--GACA---AACGATTCTTGATCATTT-TTGTCACCTGGTTTTCTAAA----AGC-AAACATCTGGGATAATCAAGAT----TGGTCAGCC--ATTAT-------------------TGTAAGAC-------------AGACAACTA-A--ATGAAACAGAC-TGACCATTTTACAAGTA-GAAAatccatgcgcatgcgcctgacatgtcgtcaggaaggaggtttcttaacaaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CTCTATAATACAAACGCCGAAATAATCTAGATTGCTTTGCCTGTATTGTCAGAAAGAACATACGGATATGTTATGAAGTAGAAAGTTCCCCCGATGCATTTGCCTGTCATTCGGTCAAGGA
Alignments
lowQualScore : 2222 33333 22222222 222222 111 111 55555555 1 11 33333333333 11 22222222 444444444444444444444444444444 11 111111 333333333333333333333 111111111 2222222222222222222
lowQualScore : 8888 0 33333 7 66 8 0 77 1 5 44444444 999999 6 000 4 333 6 55555555 0 7 77 6 1 1 66666666666 8 66 1 6 0 5 1 1 3 3 1 0 1 66666666 77 0 88 777777777777777777777777777777 11 0 1 666666 66 666666666666666666666 5 8 0 7 777 0 5 4 1 66 777 7 2 4 55 0 5 0 7777 3 0 555 1 555555555 44 2222222222222222222 2 88 1 6 66 33 0 66 55 3
lowQualScore : .... . ..... . .. . . .. . . ........ ...... . ... . ... . ........ . . .. . . . ........... . .. . . . . . . . . . . . ........ .. . .. .............................. .. . . ...... .. ..................... . . . . ... . . . . .. ... . . . .. . . . .... . . ... . ......... .. ................... . .. . . .. .. . .. .. .
lowQualScore : 3333 7 33333 3 00 0 4 00 0 7 11111111 555555 7 888 2 555 7 33333333 8 3 00 7 0 0 66666666666 0 66 4 0 8 0 0 4 2 8 4 8 4 88888888 00 6 88 222222222222222222222222222222 00 4 0 444444 44 999999999999999999999 0 9 7 6 444 8 7 4 7 11 888 2 6 0 33 9 7 7 7777 3 2 000 4 666666666 22 1111111111111111111 9 00 6 8 44 99 1 99 66 1
consensus : CAAAATAT----CGAATACGGCA-----AAAGACAATGACCCATG-TGCACANCTGNTTTGAAAAAGT-GATATAGAGAAT-----A-ACATTTTAAAANTGC-CA--TAAATAATCAAT-T-C-AAAC-T-GCA-CTGCTTGTTGTTTAA-ANGNTTACT----------TGAAA-ATTT-AAGTAGTTATAATATGATNAAGATGTTTGACCTGGANTCAGCAACAAATACACATACTTAGAGTNGGAAACGAATCAGATCTGTCTGCATTTAACGANA----AAAAATACGA-----GACTAAAATACT--TTGTTATTGTGGCGGATGTGNAATAATTA------TTGCAAACCA-TTT-GTTTGT--------CGTCTGTTTC-ATT-AGACGTTTTNAAGTT--TGTGCGTC-TTACGATACA--GACT---AACTANTCTTGATCATCT-TCGACGCTTGCTTTTCTAAA----AGC-AAGCATCAGAGACGATCAAGAT----NAGTTAGTC--TGTAT-------------------CGTAAGACGCA-CATATTTNAAAACATCTA-A--ATGAAACAGAC-GGACCG-TTTACAGGTA-GAAAT
Reference ( family-4406 ) : CAAAATAT----CGAATACGGCA-----AAAGACAATGACCCATG-TGCACANCTGNTTTGAAAAAGT-GATATAGAGAAT-----A-ACATTTTAAAANTGC-CA--TAAATAATCAAT-T-C-AAAC-T-GCA-CTGCTTGTTGTTTAA-ANGNTTACT----------TGAAA-ATTT-AAGTAGTTATAATATGATNAAGATGTTTGACCTGGANTCAGCAACAAATACACATACTTAGAGTNGGAAACGAATCAGATCTGTCTGCATTTAACGANA----AAAAATACGA-----GACTAAAATACT--TTGTTATTGTGGCGGATGTGNAATAATTA------TTGCAAACCA-TTT-GTTTGT--------CGTCTGTTTC-ATT-AGACGTTTTNAAGTT--TGTGCGTC-TTACGATACA--GACT---AACTANTCTTGATCATCT-TCGACGCTTGCTTTTCTAAA----AGC-AAGCATCAGAGACGATCAAGAT----NAGTTAGTC--TGTAT-------------------CGTAAGACGCA-CATATTTNAAAACATCTA-A--ATGAAACAGAC-GGACCG-TTTACAGGTA-GAAAT
gi|1 : CAAAACATAGGGTGAATACGGTAGTTAGAAAAGCAA-GAAACTTG-AGCACAGTTGATTTGAAAAAAT-GATATAGCGAAT-----C-TCATTT---ACATGC-CA--TAAATGATCAAT-TAC-AAA--T-G-A-TCGCTCCTTGTTCAA-AAGGTTAAT----------------ATTC-AAATAGTTAAAA---GATAAAGTTGCTTGACCTGTAGTTAGCAACAAGTACCCATACTTAGAGTCAACAACAACTCAGATTCGTCGGTATTTAGTGACATTAAAAAAATACAA-----GACCAAAGTACT--TTGTTATTGTGATTGATGTGAAATAATTA------TTGCAATCCAATTT-GTTTGT--------CATCTGTTTC-ATT-AGATTTTTTTAAGTT--TGTGAATC-TTAAGATACA--GACT---AACTGGTCTTGATCATCA-TCGGTGCTTGCATTTCTAAA----AGC-AAGCACAAAAGATGATCAAGAT----AAGTTAATC--TGTAT-------------------CAAAAGACGCA-CACATTTCAAAACATCTA-A--ATGAA--AGAC-TGACCA-CTTACAGGTA-GAAAT
gi|10 : ATCC-TTGATGCTTATTTTTCTAAA----AGC---GCATAAAATATTATCAAGAT----TATTTGGTC--TCTAT-------------------CATAAGTTGTA-CATATTTTAAAACAT-TA-AATATAAAATAGACTGGACTG-TTTACATGTA-AAAAT
gi|11 : gtTGCGCCATTATGATACA--TTTTTAAAAC-ATTCTTGATCATCT-TCAGCGCTTGCTTTTTCAAA----TGT-AACCGTCGGAGACGATAAATGT----CTG-TAGTT--TATAT-------------------AGTAGGACGTA-CCTATTTGTAAACATTTA-A--ATGAATTAGAT-AGAAAG--TTACAttcctgacaaatgcactttatgcttaatacttattactatagagaaatttcaaaacaaatttattataaaatc
gi|12 : GGCGAATGTGTAAGCACCA------GTGCA--CTT-TCT-ATCTGTAAGCGATCCATTTGTTTC-ATTTAAATGTTTTCAAATA--TGGGCGTC-TTGCAATACAATGATT---TGCTAATCTTGAT-ATTT-TCacccatgtattacaaaac
gi|12 : attgATCAAGAT----TAGCAAATCATTGTAT-------------------TGCAAGACGCC-CATATTTGAAAACATTTA-A--ATGAAACAAAT-GGATCG-CTTACAGATA-GAAAtggcactttgcctggaagggaatatttaaaaa
gi|13 : attggaaaatTTATAAA----AGA-AAGTATTAGAGACAATCAAGAT----AAATCAGTC--TGTTT-------------------CGCAAGAAGCT-CAT-T-----AATATCTT-A--ATAAAACAGAC-G----A-TTTACATGTA-GAAAgtgcactggtgcttacacattcgcctggcactttgcctggaagggaatatttaaaaa
gi|14 : C-AAGCATCAAAGATGATCAAAAT----GAATTAGTC--TGTAT-------------------CATAAAAAAC------TTTAAAAACATCT-----CTGAAACAGAC-AGATCA-TTTATCACTA-GAAActtcccaaatgcacaactttaatgcatatgcttggcatttgggcagaatgtaaat
gi|16 : TTGTTTTTCTAAA----AATTAGGCATTAAAGATGATAAAGAT----TGGACAGTC--TGTAT-------------------TATAAGATGCT-TATAAACGAAAAAATCT------T-AAACA-----------TTTACAGGTA-GAAAgttcattgagacacatgcctacccttcattctgcatgggaatatgtaaaagaag
gi|17 : gG-TACATA-CTGCTATGAAAAAAT-GATATAAATAATTTATAATACATTC---ACCTGTACA---AAGTAATCGATGC-C-AGACAT-ATAACTGCTTGTTGTGTAA-ACGTTTACT----------ggtctcactactgtag
gi|18 : tgagTAAA----AGC-AAACATCCTAGACAATCAAGAT----GGG--A--------AT-------------------CGTAAGATGCATCATATTTAAAAACATCCT-A--ATCAAACAGAC-AGACCA-TTTACACACA-GAAatttcaatac
gi|19 : cctggtgacta--------CGTCTGCTGC-ATG-AGACGTTTTAAAGTG--TGTGCGTC-TTTTGATACA--GACC---AAC-ATTATTGCACATCTGTC-ACACTTACtgt
gi|2 : CACAGCTGATCTGAAAAAGT-GACATAAAGAAT-----A-
gi|2 : acctaaacATA----AAGAATACAATAGTAAACTAGAAGACTGTTTGTTATTGTGACGGATGTGAAACAATTACATGTATTACAACCCA-TTTTGTATGC--------TATCTTTTTTTATA-AAACATTTTTAAGTTAATATA-ATC-TTACAATACA--AA-----AACTAGTCTTGATCATTG-TAAATGCTTTGTTTTCTAAAAGCAAGC-AAGCATCAAGAATGATCAAGATTACCTAGTTGGTC--TGTATTTATCTACAAGATGCACTGTGTATCATGCA-CACATTTTAAAACATCTT-A--ATGAAACA-----GATTG-TTTACAGGTA-GAAGTcaatagtaaactagaagactgtttgttattgtgacggatgtgaaacaattacatgtattacaacccattttgtatgctatctttttttataaaacatttttaagttaatataatcttacaatacaaaaactagtcttgatcattgtaaatgctttgttttctaaaagcaagcaagcatcaagaatgatcaagattacctagttggtctgtatttatctacaagatgcactgtgtatcatgcacacattttaaaacatcttaatgaaacagattgtttacaggtagaagtttgatttctgatgcatgagctttgtgcacataactggcttcaggccaatatgcagattttcttaaaataacatgcaaaacttatactgtttgtttaaactgcttggcaaaaacaaaaacatacttgtacaaatatttg
gi|20 : acctaaaccacagctgatctgaaaaagtgacTTGGGGCAGATGTGCAATGATTA------TTGCAAAC----TG-GTTTTT--------AATCTGTTTC-ATT-AAATGTTttgatttctgatgcatgagctttgtgcacataactggcttcaggccaatatgcagattttcttaaaataacatgcaaaacttatactgtttgtttaaactgcttggcaaaaacaaaaacatacttgtacaaatatttg
gi|21 : T-------------------CATAAAATGCA-TTTATTTTAAAACATTTA-A--ATGAAACAGAC-AGACCA-TTTACTAACA-GAAaaa
gi|3 : GCACATATGGATTGAAGACGAAGATACAAAGAAT-----A--CATTT---AACTGA-CAAATATGTAATCAGTCT-C-AAACAT-GCATCTGCTTGTGGC--AA-AGGTTTACTAGCTAAATACTGAAA-ATT----GTATTTATTATATTGTAAAGATGTTTGAC------TAA--AACAAA-ACACATGTTCAGA-----------ATCAGAT-TACCTG--TTTAACGA-A----GAAAAT---------GACTAAGATTGT--TTGATATTATGGCGGATGTGTAATAATTA------TTGCAAACCA--------------------GTCTGTTTC-ATT-AGATGCTTTAAAGTT--TGTACATC-TTACGATACA--GACT---AATTACTCTTGAACATCT-AGAACACTTGCTGTT-----------------ATTTGAGACAATC--------------AGTC--TGTAT-------------------CATAAGACGC-------------AGATCTA-A--ATGAAACATAC-ATACCA-TTTACAGGTA-
gi|4 : acctggaAAATATGA-----GA------TATT--GTGTTTTTGTGACAGATGTGCAATAGTTA------TTGC----CA-GTC-GGTTG----------GTCTTATTC-ATTTAGATATTTTCAAATA--TATGAGTC-TTATGATACA--GACT---AA----TCATGATCATCT-TCGACTCTAG-TTTGTTAAA----AAC-AAACAT------------AGAT----T--TTAATC-----------------------------AAGA---A-TATATAT--ATACATCTA-A--ATAAAACAGAC-AGACCA-TTTACTGATA-GTAAcatgtagtatgttcccagacacatgcctttggctattttttttgagctaccatattgt
gi|5 : tcagagtcatacaacgacataatagtccacttaaagctgattgtgacGACC--TGCTACAAAGCTGCATTGAAACAGT-AATATTGAGAAT-----T-GTATTTCAA-----C-CA--CAA-TAATCAAT-T-CCAAAC-TTGCAATTGATTGTTGTTTAATAGGCTTTCTA---------TCAAATACTGAAAGTATTTGT--TAC--TTTAGTTGTTGGACCTGAAGCCAGCAACAAATATACATTTTTAGAGTT--AA---AAT--GATC------------ACGAGA----------ACGA-----A--------ACT--TTGTTA------CGGATGTGTAATACTTA------TTGCAAACCG-Tgtaccctgacgcatgcgcctggtctcggtcaggaagggaccatcta
gi|6 : aaCAAAATAT----CGAATATGGCA-----AAAGACAATGACCCATG-TGCATACTTTTTTTTGAAAAGT-GATATAGAAAAT-----A-ACATTTTAAAAGTGC-CA--TAAATAATCAAT-T-C-AAA------A-CTG-TTG-TGTT--A-ATGGTTATT----------TGAAA-GTTT-AAGTTGTTATAATATGATCAACATGTTTGACCTGGACTCAGTAATAAATACATATACCTAGTGTAGGAAATGAATCAGATCTGTCTGCAT
gi|7 : AAAATAT----CGAATATGGCA-----AAAGACAATGACCCATG-TGCATACTTTTTTTTGAAAAGT-GATATAGAAAAT-----A-ACATTTTAAAAGTGC-CA--TAAATAATCAAT-T-C-AAA------A-CTG-TTG-TGTT--A-ATGGTTATT----------TGAAA-GTTT-AAGTTGTTATAATATGATCAACATGTTTGACCTGGACTCAGTAATAAATACATATACCTAGTGTAGGAAATGAATCAGATCTGTCTGCATT
gi|8 : TTTC-ATA-AGACGTTT----GTT--TA-GAGTC-TTATGATTAA--GACT---GGCTAGTTATG-TCAACT-TCA--------TTTTCTAAA----ATC-ATCCATCGGAGATGATCAAAA-----AGGTGAATC--TGTAT-------------------CGTAAGGCGCA-TATATTTAAAAAAATATATA--ATAAAACAGAC-GAATCC-TTAACAGGTATGAAA
gi|9 : T-AGATGTTTT-AAGTT--TGCTTATT-TTATGATGAA--GACA---AACGATTCTTGATCATTT-TTGTCACCTGGTTTTCTAAA----AGC-AAACATCTGGGATAATCAAGAT----TGGTCAGCC--ATTAT-------------------TGTAAGAC-------------AGACAACTA-A--ATGAAACAGAC-TGACCATTTTACAAGTA-GAAAatccatgcgcatgcgcctgacatgtcgtcaggaaggaggtttcttaacaaa
blockSeqs : . . T CA C GC C A TTATAATA TAAAAG A AAT G GC C CATATAA C T GT T C T AGCTAAATACT T GA A T T A A A G C A AGGAAATG CT CA TAAAGAATACAATAGTAAACTAGAAG GT T CATGTA AC TTCTATCTGTAAGCGATCC T T C TAA C A T AT TAA T T G GA T AGCA T AAA T TACCTAGTT AT TTATCTACAAGATGCACTG T AT T T AT AT TG AT T
blockSeqs : . . T CA . TA A . TG TAAAAG . C G CT . CATGCAT C T TT . G T AT . T A A G T T G C T A AGGAAATG CT CA AGAAAATGACTAAGAT . A . AA ATTTTGTATGCT . T A A C . C . . T A . AG C . . CGG C TATTT . . C A T G A . A G .
blockSeqs : . . GC G . AA ACC . T A T . CTTGCAA A T T . G C T . T T A G C A G C T T TAA T . GAACGAA . C . AA TGGTTTTTA . . T G C . T . . T T . AA T . . TAG C TAGCA . . C A T G A . G G .
blockSeqs : . CT C . AA AAC . T A T . A . . T . T G T . . T . . C A . . . T . C . . T . AA AGTCGGTTG . . A T C . C . . T G . AA C . . CAA T AAATC . . A C T A A . G G .
blockSeqs : CT T . A CAA . . . T . A . . . . T G C . . A . . C A A . C . . G C . GA G . . TAA T GAATT . . A T A G T . A A .
blockSeqs : C T . T . . . . . T A . T . . . G . GT C . . CCT C TGGAC . . T T T A T . A A .
blockSeqs : . . . T T . T . . . T . A G . . CAA T AGGTG . . T A T T T . A A .
blockSeqs : . . . T . . . . . A . . . TTG C TGGTC . . T A T T A . A G .
blockSeqs : . . . . CGG T CTGT . . T A A A A . A A .
blockSeqs : . . CTG T GGG . . C A T . A . G A .
blockSeqs : . . . TTT . . C . . . A . T A .
blockSeqs : . . . C . . . . . . C .
blockSeqs : . . . . . . . . .
blockSeqCons : T** CATGCAA* AT********* CT ATTTTGTAG************
originalCons : CAAAATAT----CGAATACGGCA-----AAAGACAATGACCCATG-TGCACANCTGNTTTGAAAAAGT-GATATAGAGAAT-----A-ACATTTTAAAANTGC-CA--TAAATAATCAAT-T-C-AAAC-T-GCA-CTGCTTGTTGTTTAA-ANGNTTACT----------TGAAA-ATTT-AAGTAGTTATAATATGATNAAGATGTTTGACCTGGANTCAGCAACAAATACACATACTTAGAGTNGGAAACGAATCAGATCTGTCTGCATTTAACGANA----AAAAATACGA-----GACTAAAATACT--TTGTTATTGTGGCGGATGTGNAATAATTA------TTGCAAACCA-TTT-GTTTGT--------CGTCTGTTTC-ATT-AGACGTTTTNAAGTT--TGTGCGTC-TTACGATACA--GACT---AACTANTCTTGATCATCT-TCGACGCTTGCTTTTCTAAA----AGC-AAGCATCAGAGACGATCAAGAT----NAGTTAGTC--TGTAT-------------------CGTAAGACGCA-CATATTTNAAAACATCTA-A--ATGAAACAGAC-GGACCG-TTTACAGGTA-GAAAT
finalCons : CAAAATAT----CGAATACGGCA-----AAAGACAATGACCCATG-TGCACANCTGNTTTGAAAAAGT-GATATAGAGAAT-----A-ACATTTTAAAANTGC-CA--TAAATAATCAATT--C-AAACATGCAA-CTGCTTGTTGTTTAA-ANGNTTACTAT---------GAAA-ATTT-AAGTAGTTATAATATGATNAAGATGTTTGACCTGGANTCAGCAACAAATACACATACTTAGAGTNGGAAACGAATCAGATCTGTCTGCATTTAACGANA----AAAAATACGA-----GACTAAAATACT--TTGTTATTGTGGCGGATGTGNAATAATTA------TTGCAAACCATTTTGTAG------------GTCTGTTTC-ATT-AGACGTTTTNAAGTT--TGTGCGTC-TTACGATACA--GACT---AACTANTCTTGATCATCT-TCGACGCTTGCTTTTCTAAA----AGC-AAGCATCAGAGACGATCAAGAT----NAGTTAGTC--TGTAT-------------------CGTAAGACGCA-CATATTTNAAAACATCTA-A--ATGAAACAGAC-GGACCG-TTTACAGGTA-GAAAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CTCTATAATACAAACGCCGAAATAATCTAGATTGCTTTGCCTGTATTGTCAGAAAGAACATACGGATATGTTATGAAGTAGAAAGTTCCCCCGATGCATTTGCCTGTCATTCGGTCAAGGA
Alignments
lowQualScore : 2222 33333 22222222 222222 111 111 333333 1 11 3333333333 22222222 444444444444444444444444444444 11 111111 4444444444444444444 111 111111111 2222222222222222222
lowQualScore : 8888 0 33333 7 66 8 0 77 1 5 44444444 999999 6 000 4 333 6 000000 0 7 77 6 1 1 3 4444444444 5 8 8 8 1 6 0 5 1 1 3 3 1 0 1 66666666 77 0 88 777777777777777777777777777777 11 0 1 666666 66 5555555555555555555 000 5 8 0 7 777 0 5 4 1 66 777 7 2 4 55 0 5 0 7777 3 0 555 1 555555555 44 2222222222222222222 2 88 1 6 66 33 0 66 55 3
lowQualScore : .... . ..... . .. . . .. . . ........ ...... . ... . ... . ...... . . .. . . . . .......... . . . . . . . . . . . . . . . ........ .. . .. .............................. .. . . ...... .. ................... ... . . . . ... . . . . .. ... . . . .. . . . .... . . ... . ......... .. ................... . .. . . .. .. . .. .. .
lowQualScore : 3333 7 33333 3 00 0 4 00 0 7 11111111 555555 7 888 2 555 7 777777 8 3 00 7 0 0 7 0000000000 0 0 6 0 4 0 8 0 0 4 2 8 4 8 4 88888888 00 6 88 222222222222222222222222222222 00 4 0 444444 44 6666666666666666666 000 0 9 7 6 444 8 7 4 7 11 888 2 6 0 33 9 7 7 7777 3 2 000 4 666666666 22 1111111111111111111 9 00 6 8 44 99 1 99 66 1
consensus : CAAAATAT----CGAATACGGCA-----AAAGACAATGACCCATG-TGCACANCTGNTTTGAAAAAGT-GATATAGAGAAT-----A-ACATTTTAAAANTGC-CA--TAAATAATCAAT-T-C-AAAC-TGCAACTGCTTGTTGTTTAA-ANGNTTACTA---------TGAAA-ATTTAA-GTAGTTATAATATGATNAAGATGTTTGACCTGGANTCAGCAACAAATACACATACTTAGAGTNGGAAACGAATCAGATCTGTCTGCATTTAACGANA----AAAAATACGA-----GACTAAAATACT--TTGTTATTGTGGCGGATGTGNAATAATTA------TTGCAAACCGNTT---TGTA-G-------TC---TGTTTC-ATT-AGACGTTTTNAAGTT--TGTGCGTC-TTACGATACA--GACT---AACTANTCTTGATCATCT-TCGACGCTTGCTTTTCTAAA----AGC-AAGCATCAGAGACGATCAAGAT----NAGTTAGTC--TGTAT-------------------CGTAAGACGCA-CATATTTNAAAACATCTA-A--ATGAAACAGAC-GGACCG-TTTACAGGTA-GAAAT
Reference ( family-4406 ) : CAAAATAT----CGAATACGGCA-----AAAGACAATGACCCATG-TGCACANCTGNTTTGAAAAAGT-GATATAGAGAAT-----A-ACATTTTAAAANTGC-CA--TAAATAATCAAT-T-C-AAACATGCAACTGCTTGTTGTTTAA-ANGNTTACTA---------TGAAA-ATTTAA-GTAGTTATAATATGATNAAGATGTTTGACCTGGANTCAGCAACAAATACACATACTTAGAGTNGGAAACGAATCAGATCTGTCTGCATTTAACGANA----AAAAATACGA-----GACTAAAATACT--TTGTTATTGTGGCGGATGTGNAATAATTA------TTGCAAACCATTT---TGTAGG-------TC---TGTTTC-ATT-AGACGTTTTNAAGTT--TGTGCGTC-TTACGATACA--GACT---AACTANTCTTGATCATCT-TCGACGCTTGCTTTTCTAAA----AGC-AAGCATCAGAGACGATCAAGAT----NAGTTAGTC--TGTAT-------------------CGTAAGACGCA-CATATTTNAAAACATCTA-A--ATGAAACAGAC-GGACCG-TTTACAGGTA-GAAAT
gi|1 : CAAAACATAGGGTGAATACGGTAGTTAGAAAAGCAA-GAAACTTG-AGCACAGTTGATTTGAAAAAAT-GATATAGCGAAT-----C-TCATTT---ACATGC-CA--TAAATGATCAAT-TAC-AAA--TG--ATCGCTCCTTGTTCAA-AAGGTTA--A---------T-----ATTCAA-ATAGTTAAAA---GATAAAGTTGCTTGACCTGTAGTTAGCAACAAGTACCCATACTTAGAGTCAACAACAACTCAGATTCGTCGGTATTTAGTGACATTAAAAAAATACAA-----GACCAAAGTACT--TTGTTATTGTGATTGATGTGAAATAATTA------TTGCAATCCAATT---TGTTTG-------TCATCTGTTTC-ATT-AGATTTTTTTAAGTT--TGTGAATC-TTAAGATACA--GACT---AACTGGTCTTGATCATCA-TCGGTGCTTGCATTTCTAAA----AGC-AAGCACAAAAGATGATCAAGAT----AAGTTAATC--TGTAT-------------------CAAAAGACGCA-CACATTTCAAAACATCTA-A--ATGAA--AGAC-TGACCA-CTTACAGGTA-GAAAT
gi|10 : ATCC-TTGATGCTTATTTTTCTAAA----AGC---GCATAAAATATTATCAAGAT----TATTTGGTC--TCTAT-------------------CATAAGTTGTA-CATATTTTAAAACAT-TA-AATATAAAATAGACTGGACTG-TTTACATGTA-AAAAT
gi|11 : gtTGCGCCATTATGATACA--TTTTTAAAAC-ATTCTTGATCATCT-TCAGCGCTTGCTTTTTCAAA----TGT-AACCGTCGGAGACGATAAATGT----CTG-TAGTT--TATAT-------------------AGTAGGACGTA-CCTATTTGTAAACATTTA-A--ATGAATTAGAT-AGAAAG--TTACAttcctgacaaatgcactttatgcttaatacttattactatagagaaatttcaaaacaaatttattataaaatc
gi|12 : GGCGAATGTGTAAGCACCA------GTGCA--CTTTCTATCTGTAAGCGATCCATT---TGTTTC-ATTTAAATGTTTTCAAATA--TGGGCGTC-TTGCAATACAATGATT---TGCTAATCTTGAT-ATTT-TCacccatgtattacaaaac
gi|12 : attgATCAAGAT----TAGCAAATCATTGTAT-------------------TGCAAGACGCC-CATATTTGAAAACATTTA-A--ATGAAACAAAT-GGATCG-CTTACAGATA-GAAAtggcactttgcctggaagggaatatttaaaaa
gi|13 : attggaaaatTTATAAA----AGA-AAGTATTAGAGACAATCAAGAT----AAATCAGTC--TGTTT-------------------CGCAAGAAGCT-CAT-T-----AATATCTT-A--ATAAAACAGAC-G----A-TTTACATGTA-GAAAgtgcactggtgcttacacattcgcctggcactttgcctggaagggaatatttaaaaa
gi|14 : C-AAGCATCAAAGATGATCAAAAT----GAATTAGTC--TGTAT-------------------CATAAAAAAC------TTTAAAAACATCT-----CTGAAACAGAC-AGATCA-TTTATCACTA-GAAActtcccaaatgcacaactttaatgcatatgcttggcatttgggcagaatgtaaat
gi|16 : TTGTTTTTCTAAA----AATTAGGCATTAAAGATGATAAAGAT----TGGACAGTC--TGTAT-------------------TATAAGATGCT-TATAAACGAAAAAATCT------T-AAACA-----------TTTACAGGTA-GAAAgttcattgagacacatgcctacccttcattctgcatgggaatatgtaaaagaag
gi|17 : gG-TACATA-CTGCTATGAAAAAAT-GATATAAATAATTTATAATACATTC---ACCTGTACA---AAGTAATCGATGC-C-AGACATATAACTGCTTGTTGTGTAA-ACGTTTACTA---------Tggtctcactactgtag
gi|18 : tgagTAAA----AGC-AAACATCCTAGACAATCAAGAT----GGG--A--------AT-------------------CGTAAGATGCATCATATTTAAAAACATCCT-A--ATCAAACAGAC-AGACCA-TTTACACACA-GAAttcaatac
gi|19 : cctggtgactaG-------TC---TGCTGC-ATG-AGACGTTTTAAAGTG--TGTGCGTC-TTTTGATACA--GACC---AAC-ATTATTGCACATCTGTC-ACACTTACtgt
gi|2 : CACAGCTGATCTGAAAAAGT-GACATAAAGAAT-----A-g
gi|2 : acctaaacATA----AAGAATACAATAGTAAACTAGAAGACTGTTTGTTATTGTGACGGATGTGAAACAATTACATGTATTACAACCCATTT---TGTATGCTA----TC---TTTTTTTATA-AAACATTTTTAAGTTAATATA-ATC-TTACAATACA--AA-----AACTAGTCTTGATCATTG-TAAATGCTTTGTTTTCTAAAAGCAAGC-AAGCATCAAGAATGATCAAGATTACCTAGTTGGTC--TGTATTTATCTACAAGATGCACTGTGTATCATGCA-CACATTTTAAAACATCTT-A--ATGAAACA-----GATTG-TTTACAGGTA-GAAGTcaatagtaaactagaagactgtttgttattgtgacggatgtgaaacaattacatgtattacaacccattttgtatgctatctttttttataaaacatttttaagttaatataatcttacaatacaaaaactagtcttgatcattgtaaatgctttgttttctaaaagcaagcaagcatcaagaatgatcaagattacctagttggtctgtatttatctacaagatgcactgtgtatcatgcacacattttaaaacatcttaatgaaacagattgtttacaggtagaagtttgatttctgatgcatgagctttgtgcacataactggcttcaggccaatatgcagattttcttaaaataacatgcaaaacttatactgtttgtttaaactgcttggcaaaaacaaaaacatacttgtacaaatatttg
gi|20 : acctaaaccacagctgatctgaaaaagtgacTTGGGGCAGATGTGCAATGATTA------TTGCAAACTGGTT---TTTA-A-------TC---TGTTTC-ATT-AAATGTTttgatttctgatgcatgagctttgtgcacataactggcttcaggccaatatgcagattttcttaaaataacatgcaaaacttatactgtttgtttaaactgcttggcaaaaacaaaaacatacttgtacaaatatttg
gi|21 : T-------------------CATAAAATGCA-TTTATTTTAAAACATTTA-A--ATGAAACAGAC-AGACCA-TTTACTAACA-GAAaaa
gi|3 : GCACATATGGATTGAAGACGAAGATACAAAGAAT-----A--CATTT---AACTGA-CAAATATGTAATCAGTCT-C-AAACATGCATCTGCTTGTGGC--AA-AGGTTTACTAGCTAAATACTGAAA-ATT----GTATTTATTATATTGTAAAGATGTTTGAC------TAA--AACAAA-ACACATGTTCAGA-----------ATCAGAT-TACCTG--TTTAACGA-A----GAAAAT---------GACTAAGATTGT--TTGATATTATGGCGGATGTGTAATAATTA------TTGCAAACCA-----------G-------TC---TGTTTC-ATT-AGATGCTTTAAAGTT--TGTACATC-TTACGATACA--GACT---AATTACTCTTGAACATCT-AGAACACTTGCTGTT-----------------ATTTGAGACAATC--------------AGTC--TGTAT-------------------CATAAGACGC-------------AGATCTA-A--ATGAAACATAC-ATACCA-TTTACAGGTA-
gi|4 : acctggaAAATATGA-----GA------TATT--GTGTTTTTGTGACAGATGTGCAATAGTTA------TTGC----CAGTC---GGTTGG-------TC---TTATTC-ATTTAGATATTTTCAAATA--TATGAGTC-TTATGATACA--GACT---AA----TCATGATCATCT-TCGACTCTAG-TTTGTTAAA----AAC-AAACAT------------AGAT----T--TTAATC-----------------------------AAGA---A-TATATAT--ATACATCTA-A--ATAAAACAGAC-AGACCA-TTTACTGATA-GTAAcatgtagtatgttcccagacacatgcctttggctattttttttgagctaccatattgt
gi|5 : tcagagtcatacaacgacataatagtccacttaaagctgattgtgacGACC--TGCTACAAAGCTGCATTGAAACAGT-AATATTGAGAAT-----T-GTATTTCAA-----C-CA--CAA-TAATCAAT-T-CCAAACTTGCAATTGATTGTTGTTTAATAGGCTTTCTA---------TCAAATACTGAAAGTATTTGT--TAC--TTTAGTTGTTGGACCTGAAGCCAGCAACAAATATACATTTTTAGAGTT--AA---AAT--GATC------------ACGAGA----------ACGA-----A--------ACT--TTGTTA------CGGATGTGTAATACTTA------TTGCAAACCGTgtaccctgacgcatgcgcctggtctcggtcaggaagggaccatcta
gi|6 : aaCAAAATAT----CGAATATGGCA-----AAAGACAATGACCCATG-TGCATACTTTTTTTTGAAAAGT-GATATAGAAAAT-----A-ACATTTTAAAAGTGC-CA--TAAATAATCAAT-T-C-AA------AACTG-TTG-TGTT--A-ATGGTTATT----------TGAAA-GTTTAA-GTTGTTATAATATGATCAACATGTTTGACCTGGACTCAGTAATAAATACATATACCTAGTGTAGGAAATGAATCAGATCTGTCTGCAT
gi|7 : AAAATAT----CGAATATGGCA-----AAAGACAATGACCCATG-TGCATACTTTTTTTTGAAAAGT-GATATAGAAAAT-----A-ACATTTTAAAAGTGC-CA--TAAATAATCAAT-T-C-AA------AACTG-TTG-TGTT--A-ATGGTTATT----------TGAAA-GTTTAA-GTTGTTATAATATGATCAACATGTTTGACCTGGACTCAGTAATAAATACATATACCTAGTGTAGGAAATGAATCAGATCTGTCTGCATT
gi|8 : TTTC-ATA-AGACGTTT----GTT--TA-GAGTC-TTATGATTAA--GACT---GGCTAGTTATG-TCAACT-TCA--------TTTTCTAAA----ATC-ATCCATCGGAGATGATCAAAA-----AGGTGAATC--TGTAT-------------------CGTAAGGCGCA-TATATTTAAAAAAATATATA--ATAAAACAGAC-GAATCC-TTAACAGGTATGAAA
gi|9 : T-AGATGTTTT-AAGTT--TGCTTATT-TTATGATGAA--GACA---AACGATTCTTGATCATTT-TTGTCACCTGGTTTTCTAAA----AGC-AAACATCTGGGATAATCAAGAT----TGGTCAGCC--ATTAT-------------------TGTAAGAC-------------AGACAACTA-A--ATGAAACAGAC-TGACCATTTTACAAGTA-GAAAatccatgcgcatgcgcctgacatgtcgtcaggaaggaggtttcttaacaaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CTCTATAATACAAACGCCGAAATAATCTAGATTGCTTTGCCTGTATTGTCAGAAAGAACATACGGATATGTTATGAAGTAGAAAGTTCCCCCGATGCATTTGCCTGTCATTCGGTCAAGGA