lowQualScore : 1
lowQualScore : 1 5 777 22 22 2
lowQualScore : . . ... .. .. .
lowQualScore : 7 0 888 22 44 0
consensus : GTTATAGTTGTAATTTGCACTTCGCTAGCATCCAGAAAAAAA-GCGATGTTGCTAATTTTAAGGCGACTTAAAACTTCGCCGTGACC--AAAA--AAAAAA--GCGAAGTGACGGAGAAAAAAGCGACT-TTGTCGCCCACGTCGCCCTCTAGTTTGAGCCC
Reference ( gi|7 ) : GTTATAGTTGTAATTTGCACTTCGCTAGCATCCAGAAAAAAA-GCGATGTTGCTAATTTTAAGGCGACTTAAAACTTCGCCGTTACC--AAAA--AAAAAA--GCGAAGTGACGGAGAAAAAAGCGACT-TTGTCGCCCACGTCGCCCTCTAGTTTGAGCCC
gi|1 : GTTATAGTTGTAATTTGCACTTCGCTAGCATCCAGAAAAAAA-GCGATGCTGCTAATTTTAAGGCGACTTAAAACTTCGCCGTGACCA-AAAA--AAAAAA--GCGAAGTAACGGAGAAAACAGCGACT-TTGTCGCCCACGTCGCCCTCTAGTTTGAGCCC
gi|2 : GTTATAGTTGTTATTTGCACTTCGCTAGCATCCAGAAAAAAA-GCGATGTTGCTAATTTTAAGGCGACTTAAAACTTCGCCGTGACCAAAAAA--AAAAAA--GCGAAGTGACGGAGAAAAAAGCGACT-TTGTCGCCCACGTCGCCCTATAGTTTGAGCCCtg
gi|8 : GTTATAGTTGTAATTTGCACTTCGCTTGCATCCAGAAAAAAA-GCGATGTTGCTAATTTTAAGGCGACTTAAAACTTCGCTG--ACC--AAAA--AAAATA--GCGAAGTGACGGAGAAAAAAGCGACT-TTGTCGCCCACGTCGCCCTCTAGTTTGAGCCCt
gi|3 : GTTATAGTTGTAATTTGCACTTCGCTAGCATCCAGAAAAAAAAGCGATGTTGTTAATTTTAAGGCGACTTAAAACTTCGCCGTGACC--AAAA--AAAAAATAGAGAAGTGACAGAGAAAAAAGCGACT-TTGTCGCCCACGTCACCCTCTAGTTTGAGCCtg
gi|4 : GTTATAGTTGTAATTTGCACTTCACTAGCATCCAGAAAAAAA-GCGATTTTGTTAATTTTAAGGCGACTTACAACTTCGCTGTGACC--AAAA--GAAAAA--GCGAAGTGACGGAGAAAAAAGCGACT-TTGTCGCCTATGTCGCCCTCTAGTTTGAGCCC
gi|5 : GTTATAGTTGTTATTTGCACTTCGCTAGCATCCAGAAAAAAA-GCGATGTTGCTAATTTTAAGGCGACTTAAAACTCCGCCGTGACC--CCAA--AAAAAA--GCGAAGCGATGTAGAAAAAAGCGACT-TTGTCGCCCACGTCGCCCTATAGTTTGAGCCCtg
gi|9 : GTTATAGTTGTAATTTGCACTTCGCTAGCATCCAG-AAAAAA-GCGATGTTGTTAATTTTAACGAGACTTAAAACTTCGCTGTGACCA-AAAA--AAAAAA--GTGAAGTGACGGAGAAAAAAACGACT-TTGTCGCCGACGTCGCCCTCTAGTTTGAGCCCt
gi|13 : GTTATAGTTGTAATTTGCACTTTGCTAGCATCCAGAAAAAA--GCGATGTTGCTAATTTTAGTGCTACTTAAAACTTCGCCGTGACC--AAAA-----AAA--GCGAAGTGATGGAGAAAAAAGCGACT-TTGTCACCCACGTCGCCCTCTAGTTTGAGCCC
gi|19 : GTTATAGTTGTAATTTGCACTTCGCTAGCGTCCAGAAAAAAA-GCGATGTTGCTAATTTTAAGGCGACTTAAAACTTCGCCGTGACC--AAAA--AAAAAA--GCGAAGTGACGGAGAAAAAAGCGACT-TTGTCGt
gi|12 : GTTATTATTGTAATTTGCACTTGGCTGGCATCCAGAAAAAA--GTGATGTTGTTAATTTTAAGGCGACTTAAAACTTCGCCGTGACC--ATAA--AAAAAA--GCAAAGTGACCAAGAAAAAAGGGACT-TTGTCGCCCACGT---CCTCTAGTTTGAGCCC
gi|21 : GTTATAGTTGTAATTTGCACTTCGCTAGCATCCAGAAAAAAA-GTGATGTTGTTAATTTTAAGGCGACTTAAAACTTCGCCATGACC---AAA--AAAAAA--GCGAAGTGACGGAGAAAAGAGCGACT-TTtg
gi|16 : GTTATAATTGTAATTTGCACTTCACTGGCAGCCAGAAAAAA--GCGATGTT---AATTTTAAGGTGACTTAAAACTTTGCCGTGACC----AA--AAAAAA--GCGAAGTGACAGA-AAAAAAGAGACT-TT---------GTCGCCCTGTAGTTTGAGCC
gi|23 : GTTATAGTTGTAATTTGCACTTTGCTAGCATCCAGAAAA-AA-GCGATGTTGCTAATTTTAAGGCGACTTAAAACTTCGCCGTGACC----AA--AAAAAA--GCGAAGTGACGGAG
gi|26 : GTTATAGTTGTAATTTGCACTTCGCTAGCATCCAGAAAAAAA-GCGATGTTGCTAATTTTAAGGCGACTTAAAACTTCGCCGTGACC--AAAA--AAAAA
gi|27 : GTAATAGTTGTAATTTGTACTTCGCTAGCATCCAGAAAAAAA-GCAATGTTACTAATTTTAAGGCGACTTAAAACTTCGCCGTGACC--CAAA--A
gi|18 : GTTATAATTGTAATTTGCACTTCACTGGCATCCAGAAAAAA--GCAATGTTGTTAATTTTAAGGCGACTTAAAACTTTGCCTTGACC--AAAAATAAAAAA--GCAA
gi|11 : TTATAGTTGTGATTTGCACTTCGCTAGCATCCAGAAAAAAA-GCGATGTTGCTAATTTTAAGGCGACTTAAAACTTCGCTG--ACC--AAAA--AAAATA--GCGAAGTGACGGAGAAAAAAGCGACT-TTGTCGCCCACGTCGCCCTCTAGTTTGAGCCCctttgttgttagccctgaagcagtatttggag
gi|6 : TTATAGTTGTTATTTGCACTTCGCTATTATCCAGAAAAAAA-GCGATGTTGCTAATTTTAAGGCGACTTAAAACTTCGCCGTGACC--AAAA--AAAAAA--GCGAAGTGACGGAGAAAAAAGCGACT-TTGTCGCCCACGTCGCCCTATAGTTTGAGCCCtg
gi|10 : TTATAATTGTTATTTGCACTTCGCTAGCATCCAGAAAAAAA-GCGATATTGCTAATTTTAAGGCGACTTAAAACTTCGTCGTGACC--AAAA--AAAAAA--GCGAAGTGACGGAGAAAAAAGCGACT-TTGTCGCCCACGTCGCCCTATAGTTTGAGCCCtg
gi|17 : TTATAGTTGTAATTTGCACTTCGCTAGCATCCAGAAAAAAA-GCGATGTTGCTAATTTTAAGGCGACTTAAAACTTCGCCGTGACC--AAAA--AAAA-----------------------AGCGACT-TTGTCGCCCACGTCGCCCTCTAGTTTGAGCCCt
gi|22 : TTATATTTGTAACTTGCACTTCGCTAGCATCCAGAAAAAAA-GCGATGTTGTTAATTTTAAGGCGACTTAAAACTTCGCCGTGACC---AAA--ATAAAA--GCAAAGTGACAGAGAAAAAAt
gi|14 : TAGTTGTAATTTGCACTTCGCTAGCATCCAGAAAAAAA-GCGATGTTGTTAATTTTAAGGCGACTTAAAACTTCGCCGTGACCA-AAAA--AAAAAA--GCGAAGTGACGGAGAAAAAAGCGACT-TTGTCGCCCA---------CTAGTTCGAGCCCt
gi|15 : ttTTGTAATTTGCACTTCGCTGGCATCCAGAAAAAAA-GCGATGTTGTTAATTT-----------GAAACTTCGCCGTGACC--AAAA---AAAAA--GCGAAGTGACGGAGAAAAAAGCGAGT-TTGTCGCCAACGTCACCCTGTAGTTTGAGCCCt
gi|25 : aAAAAAAA-GCAATGTCATTAATTTTAAGGTGACTTGAAACCTCG-----ACC--AGA------------C-------CTTAGAAA------ATTCTTGTTGCCCACATAACCCTCTAGTTCGAGCCCtg
gi|24 : TGTTAATTTTAAGGCGACTTAAAACTTCGCCTTGACC--AAAA--AAAAAA--GCTAAGTGATGGAGAAAAAAGCACCT-TTGTCGCCCATGTCACCCTCTAGTTTGAGCCCtg
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|20 ): AAAAGCAAACACAGTTAACTTCGTTAAAAAACAATGAAGCAGCATTTGGAGCTCTAGGGACTGTTTACTGGTGGGGAAAAGAGAAGTTACCAACATCCAAGTACATGTCATTGTTGAATTTACTG
Unaligned ( gi|28 ): AAGCAGTATTTGGAGATCTACGGACTGTTTACTGGTTGGGAAAAGAGAAGTTACCAACATCCAAGTACAAGTTATTGTTGAATTCACTG
Unaligned ( gi|29 ): GGAAAAGAGAAGTTACCAACATCCGAGTACAAGTCATTGTTGAATTTACTG
Alignments
lowQualScore : 1 777 22 22 1
lowQualScore : . ... .. .. .
lowQualScore : 6 111 11 22 9
consensus : GTTATAGTTGTAATTTGCACTTCGCTAGCATCCAGAAAA-AAAGCGATGTTGCTAATTTTAAGGCGACTTAAAACTTCGCCGTGACC--AAAA--AAAAA--AGCGAAGTGACGGAGAAAAAAGCGACT-TTGTCGCCCACGTCGCCCTCTAGTTTGAGCCC
Reference ( family-4361 ) : GTTATAGTTGTAATTTGCACTTCGCTAGCATCCAGAAAA-AAAGCGATGTTGCTAATTTTAAGGCGACTTAAAACTTCGCCGTGACC--AAAA--AAAAA--AGCGAAGTGACGGAGAAAAAAGCGACT-TTGTCGCCCACGTCGCCCTCTAGTTTGAGCCC
gi|1 : GTTATAGTTGTAATTTGCACTTCGCTAGCATCCAGAAAA-AAAGCGATGCTGCTAATTTTAAGGCGACTTAAAACTTCGCCGTGACCA-AAAA--AAAAA--AGCGAAGTAACGGAGAAAACAGCGACT-TTGTCGCCCACGTCGCCCTCTAGTTTGAGCCC
gi|10 : TTATAATTGTTATTTGCACTTCGCTAGCATCCAGAAAA-AAAGCGATATTGCTAATTTTAAGGCGACTTAAAACTTCGTCGTGACC--AAAA--AAAAA--AGCGAAGTGACGGAGAAAAAAGCGACT-TTGTCGCCCACGTCGCCCTATAGTTTGAGCCCtg
gi|11 : TTATAGTTGTGATTTGCACTTCGCTAGCATCCAGAAAA-AAAGCGATGTTGCTAATTTTAAGGCGACTTAAAACTTCGC--TGACC--AAAA--AAAAT--AGCGAAGTGACGGAGAAAAAAGCGACT-TTGTCGCCCACGTCGCCCTCTAGTTTGAGCCCt
gi|12 : GTTATTATTGTAATTTGCACTTGGCTGGCATCCAGAAAA-AA-GTGATGTTGTTAATTTTAAGGCGACTTAAAACTTCGCCGTGACC--ATAA--AAAAA--AGCAAAGTGACCAAGAAAAAAGGGACT-TTGTCGCCCACGT---CCTCTAGTTTGAGCCCtg
gi|13 : GTTATAGTTGTAATTTGCACTTTGCTAGCATCCAGAAAA-AA-GCGATGTTGCTAATTTTAGTGCTACTTAAAACTTCGCCGTGACC--AAAA-----AA--AGCGAAGTGATGGAGAAAAAAGCGACT-TTGTCACCCACGTCGCCCTCTAGTTTGAGCCCtg
gi|14 : TAGTTGTAATTTGCACTTCGCTAGCATCCAGAAAA-AAAGCGATGTTGTTAATTTTAAGGCGACTTAAAACTTCGCCGTGACCA-AAAA--AAAAA--AGCGAAGTGACGGAGAAAAAAGCGACT-TTGTCGCCCA---------CTAGTTCGAGCCCt
gi|15 : ttTTGTAATTTGCACTTCGCTGGCATCCAGAAAA-AAAGCGATGTTGTTAATTT-----------GAAACTTCGCCGTGACC--AAAA---AAAA--AGCGAAGTGACGGAGAAAAAAGCGAGT-TTGTCGCCAACGTCACCCTGTAGTTTGAGCCCt
gi|16 : aGTTATAATTGTAATTTGCACTTCACTGGCAGCCAGAAAA-AA-GCGATGTT---AATTTTAAGGTGACTTAAAACTTTGCCGTGACC----AA--AAAAA--AGCGAAGTGACAGA-AAAAAAGAGACT-TT---------GTCGCCCTGTAGTTTGAGCCtg
gi|17 : TTATAGTTGTAATTTGCACTTCGCTAGCATCCAGAAAA-AAAGCGATGTTGCTAATTTTAAGGCGACTTAAAACTTCGCCGTGACC--AAA-------------------------AAAAAAGCGACT-TTGTCGCCCACGTCGCCCTCTAGTTTGAGCCC
gi|18 : GTTATAATTGTAATTTGCACTTCACTGGCATCCAGAAAA-AA-GCAATGTTGTTAATTTTAAGGCGACTTAAAACTTTGCCTTGACC--AAAAATAAAAA--AGCAAt
gi|19 : GTTATAGTTGTAATTTGCACTTCGCTAGCGTCCAGAAAA-AAAGCGATGTTGCTAATTTTAAGGCGACTTAAAACTTCGCCGTGACC--AAAA--AAAAA--AGCGAAGTGACGGAGAAAAAAGCGACT-TTGTCGctttgttgttagccctgaagcagtatttggag
gi|2 : GTTATAGTTGTTATTTGCACTTCGCTAGCATCCAGAAAA-AAAGCGATGTTGCTAATTTTAAGGCGACTTAAAACTTCGCCGTGACCAAAAAA--AAAAA--AGCGAAGTGACGGAGAAAAAAGCGACT-TTGTCGCCCACGTCGCCCTATAGTTTGAGCCC
gi|21 : GTTATAGTTGTAATTTGCACTTCGCTAGCATCCAGAAAA-AAAGTGATGTTGTTAATTTTAAGGCGACTTAAAACTTCGCCATGACC---AAA--AAAAA--AGCGAAGTGACGGAGAAAAGAGCGACT-TTt
gi|22 : TTATATTTGTAACTTGCACTTCGCTAGCATCCAGAAAA-AAAGCGATGTTGTTAATTTTAAGGCGACTTAAAACTTCGCCGTGACC---AAA--ATAAA--AGCAAAGTGACAGAGAAAAAA
gi|23 : GTTATAGTTGTAATTTGCACTTTGCTAGCATCCAGAAAA--AAGCGATGTTGCTAATTTTAAGGCGACTTAAAACTTCGCCGTGACC----AA--AAAAA--AGCGAAGTGACGGAGt
gi|24 : TGTTAATTTTAAGGCGACTTAAAACTTCGCCTTGACC--AAAA--AAAAA--AGCTAAGTGATGGAGAAAAAAGCACCT-TTGTCGCCCATGTCACCCTCTAGTTTGAGCCC
gi|25 : AAAA-AAAGCAATGTCATTAATTTTAAGGTGACTTGAAACCTCG-----ACC--AGA------------C-------CTTAGAAAA------TTCTTGTTGCCCACATAACCCTCTAGTTCGAGCCCt
gi|26 : GTTATAGTTGTAATTTGCACTTCGCTAGCATCCAGAAAA-AAAGCGATGTTGCTAATTTTAAGGCGACTTAAAACTTCGCCGTGACC--AAAA--AAAAA--tg
gi|27 : GTAATAGTTGTAATTTGTACTTCGCTAGCATCCAGAAAA-AAAGCAATGTTACTAATTTTAAGGCGACTTAAAACTTCGCCGTGACC--CAAA--A
gi|3 : GTTATAGTTGTAATTTGCACTTCGCTAGCATCCAGAAAAAAAAGCGATGTTGTTAATTTTAAGGCGACTTAAAACTTCGCCGTGACC--AAAA--AAAAAATAGAGAAGTGACAGAGAAAAAAGCGACT-TTGTCGCCCACGTCACCCTCTAGTTTGAGCC
gi|4 : GTTATAGTTGTAATTTGCACTTCACTAGCATCCAGAAAA-AAAGCGATTTTGTTAATTTTAAGGCGACTTACAACTTCGCTGTGACC--AAAA--GAAAA--AGCGAAGTGACGGAGAAAAAAGCGACT-TTGTCGCCTATGTCGCCCTCTAGTTTGAGCCC
gi|5 : GTTATAGTTGTTATTTGCACTTCGCTAGCATCCAGAAAA-AAAGCGATGTTGCTAATTTTAAGGCGACTTAAAACTCCGCCGTGACC--CCAA--AAAAA--AGCGAAGCGATGTAGAAAAAAGCGACT-TTGTCGCCCACGTCGCCCTATAGTTTGAGCCCtg
gi|6 : TTATAGTTGTTATTTGCACTTCGCTATTATCCAGAAAA-AAAGCGATGTTGCTAATTTTAAGGCGACTTAAAACTTCGCCGTGACC--AAAA--AAAAA--AGCGAAGTGACGGAGAAAAAAGCGACT-TTGTCGCCCACGTCGCCCTATAGTTTGAGCCCt
gi|7 : GTTATAGTTGTAATTTGCACTTCGCTAGCATCCAGAAAA-AAAGCGATGTTGCTAATTTTAAGGCGACTTAAAACTTCGCCGTTACC--AAAA--AAAAA--AGCGAAGTGACGGAGAAAAAAGCGACT-TTGTCGCCCACGTCGCCCTCTAGTTTGAGCCCtg
gi|8 : GTTATAGTTGTAATTTGCACTTCGCTTGCATCCAGAAAA-AAAGCGATGTTGCTAATTTTAAGGCGACTTAAAACTTCGC--TGACC--AAAA--AAAAT--AGCGAAGTGACGGAGAAAAAAGCGACT-TTGTCGCCCACGTCGCCCTCTAGTTTGAGCCC
gi|9 : GTTATAGTTGTAATTTGCACTTCGCTAGCATCCAG-AAA-AAAGCGATGTTGTTAATTTTAACGAGACTTAAAACTTCGCTGTGACCA-AAAA--AAAAA--AGTGAAGTGACGGAGAAAAAAACGACT-TTGTCGCCGACGTCGCCCTCTAGTTTGAGCCCtg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): AAAAGCAAACACAGTTAACTTCGTTAAAAAACAATGAAGCAGCATTTGGAGCTCTAGGGACTGTTTACTGGTGGGGAAAAGAGAAGTTACCAACATCCAAGTACATGTCATTGTTGAATTTACTG
Unaligned ( gi|28 ): AAGCAGTATTTGGAGATCTACGGACTGTTTACTGGTTGGGAAAAGAGAAGTTACCAACATCCAAGTACAAGTTATTGTTGAATTCACTG
Unaligned ( gi|29 ): GGAAAAGAGAAGTTACCAACATCCGAGTACAAGTCATTGTTGAATTTACTG
Alignments
lowQualScore : 1 777 22 22 1
lowQualScore : . ... .. .. .
lowQualScore : 6 111 11 22 9
consensus : GTTATAGTTGTAATTTGCACTTCGCTAGCATCCAGAAAA-AAAGCGATGTTGCTAATTTTAAGGCGACTTAAAACTTCGCCGTGACC--AAAA--AAAAA--AGCGAAGTGACGGAGAAAAAAGCGACT-TTGTCGCCCACGTCGCCCTCTAGTTTGAGCCC
Reference ( family-4361 ) : GTTATAGTTGTAATTTGCACTTCGCTAGCATCCAGAAAA-AAAGCGATGTTGCTAATTTTAAGGCGACTTAAAACTTCGCCGTGACC--AAAA--AAAAA--AGCGAAGTGACGGAGAAAAAAGCGACT-TTGTCGCCCACGTCGCCCTCTAGTTTGAGCCC
gi|1 : GTTATAGTTGTAATTTGCACTTCGCTAGCATCCAGAAAA-AAAGCGATGCTGCTAATTTTAAGGCGACTTAAAACTTCGCCGTGACCA-AAAA--AAAAA--AGCGAAGTAACGGAGAAAACAGCGACT-TTGTCGCCCACGTCGCCCTCTAGTTTGAGCCC
gi|10 : TTATAATTGTTATTTGCACTTCGCTAGCATCCAGAAAA-AAAGCGATATTGCTAATTTTAAGGCGACTTAAAACTTCGTCGTGACC--AAAA--AAAAA--AGCGAAGTGACGGAGAAAAAAGCGACT-TTGTCGCCCACGTCGCCCTATAGTTTGAGCCCtg
gi|11 : TTATAGTTGTGATTTGCACTTCGCTAGCATCCAGAAAA-AAAGCGATGTTGCTAATTTTAAGGCGACTTAAAACTTCGC--TGACC--AAAA--AAAAT--AGCGAAGTGACGGAGAAAAAAGCGACT-TTGTCGCCCACGTCGCCCTCTAGTTTGAGCCCt
gi|12 : GTTATTATTGTAATTTGCACTTGGCTGGCATCCAGAAAA-AA-GTGATGTTGTTAATTTTAAGGCGACTTAAAACTTCGCCGTGACC--ATAA--AAAAA--AGCAAAGTGACCAAGAAAAAAGGGACT-TTGTCGCCCACGT---CCTCTAGTTTGAGCCCtg
gi|13 : GTTATAGTTGTAATTTGCACTTTGCTAGCATCCAGAAAA-AA-GCGATGTTGCTAATTTTAGTGCTACTTAAAACTTCGCCGTGACC--AAAA-----AA--AGCGAAGTGATGGAGAAAAAAGCGACT-TTGTCACCCACGTCGCCCTCTAGTTTGAGCCCtg
gi|14 : TAGTTGTAATTTGCACTTCGCTAGCATCCAGAAAA-AAAGCGATGTTGTTAATTTTAAGGCGACTTAAAACTTCGCCGTGACCA-AAAA--AAAAA--AGCGAAGTGACGGAGAAAAAAGCGACT-TTGTCGCCCA---------CTAGTTCGAGCCCt
gi|15 : ttTTGTAATTTGCACTTCGCTGGCATCCAGAAAA-AAAGCGATGTTGTTAATTT-----------GAAACTTCGCCGTGACC--AAAA---AAAA--AGCGAAGTGACGGAGAAAAAAGCGAGT-TTGTCGCCAACGTCACCCTGTAGTTTGAGCCCt
gi|16 : aGTTATAATTGTAATTTGCACTTCACTGGCAGCCAGAAAA-AA-GCGATGTT---AATTTTAAGGTGACTTAAAACTTTGCCGTGACC----AA--AAAAA--AGCGAAGTGACAGA-AAAAAAGAGACT-TT---------GTCGCCCTGTAGTTTGAGCCtg
gi|17 : TTATAGTTGTAATTTGCACTTCGCTAGCATCCAGAAAA-AAAGCGATGTTGCTAATTTTAAGGCGACTTAAAACTTCGCCGTGACC--AAA-------------------------AAAAAAGCGACT-TTGTCGCCCACGTCGCCCTCTAGTTTGAGCCC
gi|18 : GTTATAATTGTAATTTGCACTTCACTGGCATCCAGAAAA-AA-GCAATGTTGTTAATTTTAAGGCGACTTAAAACTTTGCCTTGACC--AAAAATAAAAA--AGCAAt
gi|19 : GTTATAGTTGTAATTTGCACTTCGCTAGCGTCCAGAAAA-AAAGCGATGTTGCTAATTTTAAGGCGACTTAAAACTTCGCCGTGACC--AAAA--AAAAA--AGCGAAGTGACGGAGAAAAAAGCGACT-TTGTCGctttgttgttagccctgaagcagtatttggag
gi|2 : GTTATAGTTGTTATTTGCACTTCGCTAGCATCCAGAAAA-AAAGCGATGTTGCTAATTTTAAGGCGACTTAAAACTTCGCCGTGACCAAAAAA--AAAAA--AGCGAAGTGACGGAGAAAAAAGCGACT-TTGTCGCCCACGTCGCCCTATAGTTTGAGCCC
gi|21 : GTTATAGTTGTAATTTGCACTTCGCTAGCATCCAGAAAA-AAAGTGATGTTGTTAATTTTAAGGCGACTTAAAACTTCGCCATGACC---AAA--AAAAA--AGCGAAGTGACGGAGAAAAGAGCGACT-TTt
gi|22 : TTATATTTGTAACTTGCACTTCGCTAGCATCCAGAAAA-AAAGCGATGTTGTTAATTTTAAGGCGACTTAAAACTTCGCCGTGACC---AAA--ATAAA--AGCAAAGTGACAGAGAAAAAA
gi|23 : GTTATAGTTGTAATTTGCACTTTGCTAGCATCCAGAAAA--AAGCGATGTTGCTAATTTTAAGGCGACTTAAAACTTCGCCGTGACC----AA--AAAAA--AGCGAAGTGACGGAGt
gi|24 : TGTTAATTTTAAGGCGACTTAAAACTTCGCCTTGACC--AAAA--AAAAA--AGCTAAGTGATGGAGAAAAAAGCACCT-TTGTCGCCCATGTCACCCTCTAGTTTGAGCCC
gi|25 : AAAA-AAAGCAATGTCATTAATTTTAAGGTGACTTGAAACCTCG-----ACC--AGA------------C-------CTTAGAAAA------TTCTTGTTGCCCACATAACCCTCTAGTTCGAGCCCt
gi|26 : GTTATAGTTGTAATTTGCACTTCGCTAGCATCCAGAAAA-AAAGCGATGTTGCTAATTTTAAGGCGACTTAAAACTTCGCCGTGACC--AAAA--AAAAA--tg
gi|27 : GTAATAGTTGTAATTTGTACTTCGCTAGCATCCAGAAAA-AAAGCAATGTTACTAATTTTAAGGCGACTTAAAACTTCGCCGTGACC--CAAA--A
gi|3 : GTTATAGTTGTAATTTGCACTTCGCTAGCATCCAGAAAAAAAAGCGATGTTGTTAATTTTAAGGCGACTTAAAACTTCGCCGTGACC--AAAA--AAAAAATAGAGAAGTGACAGAGAAAAAAGCGACT-TTGTCGCCCACGTCACCCTCTAGTTTGAGCC
gi|4 : GTTATAGTTGTAATTTGCACTTCACTAGCATCCAGAAAA-AAAGCGATTTTGTTAATTTTAAGGCGACTTACAACTTCGCTGTGACC--AAAA--GAAAA--AGCGAAGTGACGGAGAAAAAAGCGACT-TTGTCGCCTATGTCGCCCTCTAGTTTGAGCCC
gi|5 : GTTATAGTTGTTATTTGCACTTCGCTAGCATCCAGAAAA-AAAGCGATGTTGCTAATTTTAAGGCGACTTAAAACTCCGCCGTGACC--CCAA--AAAAA--AGCGAAGCGATGTAGAAAAAAGCGACT-TTGTCGCCCACGTCGCCCTATAGTTTGAGCCCtg
gi|6 : TTATAGTTGTTATTTGCACTTCGCTATTATCCAGAAAA-AAAGCGATGTTGCTAATTTTAAGGCGACTTAAAACTTCGCCGTGACC--AAAA--AAAAA--AGCGAAGTGACGGAGAAAAAAGCGACT-TTGTCGCCCACGTCGCCCTATAGTTTGAGCCCt
gi|7 : GTTATAGTTGTAATTTGCACTTCGCTAGCATCCAGAAAA-AAAGCGATGTTGCTAATTTTAAGGCGACTTAAAACTTCGCCGTTACC--AAAA--AAAAA--AGCGAAGTGACGGAGAAAAAAGCGACT-TTGTCGCCCACGTCGCCCTCTAGTTTGAGCCCtg
gi|8 : GTTATAGTTGTAATTTGCACTTCGCTTGCATCCAGAAAA-AAAGCGATGTTGCTAATTTTAAGGCGACTTAAAACTTCGC--TGACC--AAAA--AAAAT--AGCGAAGTGACGGAGAAAAAAGCGACT-TTGTCGCCCACGTCGCCCTCTAGTTTGAGCCC
gi|9 : GTTATAGTTGTAATTTGCACTTCGCTAGCATCCAG-AAA-AAAGCGATGTTGTTAATTTTAACGAGACTTAAAACTTCGCTGTGACCA-AAAA--AAAAA--AGTGAAGTGACGGAGAAAAAAACGACT-TTGTCGCCGACGTCGCCCTCTAGTTTGAGCCCtg
blockSeqs : A AAA AT AT C
blockSeqs : . AA . . .
blockSeqs : . AA . . .
blockSeqs : . A . . .
blockSeqs : . A . . .
blockSeqs : . A . . .
blockSeqs : . A . . .
blockSeqs : . A . . .
blockSeqs : . A . . .
blockSeqs : . A . . .
blockSeqs : . A . . .
blockSeqs : . A . . .
blockSeqs : . A . . .
blockSeqs : . A . . .
blockSeqs : . C . . .
blockSeqs : . A . . .
blockSeqs : . A . . .
blockSeqs : . C . . .
blockSeqs : . A . . .
blockSeqs : . A . . .
blockSeqs : . A . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . .
blockSeqCons : A**
originalCons : GTTATAGTTGTAATTTGCACTTCGCTAGCATCCAGAAAA-AAAGCGATGTTGCTAATTTTAAGGCGACTTAAAACTTCGCCGTGACC--AAAA--AAAAA--AGCGAAGTGACGGAGAAAAAAGCGACT-TTGTCGCCCACGTCGCCCTCTAGTTTGAGCCC
finalCons : GTTATAGTTGTAATTTGCACTTCGCTAGCATCCAGAAAA-AAAGCGATGTTGCTAATTTTAAGGCGACTTAAAACTTCGCCGTGACCA--AAA--AAAAA--AGCGAAGTGACGGAGAAAAAAGCGACT-TTGTCGCCCACGTCGCCCTCTAGTTTGAGCCC
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): AAAAGCAAACACAGTTAACTTCGTTAAAAAACAATGAAGCAGCATTTGGAGCTCTAGGGACTGTTTACTGGTGGGGAAAAGAGAAGTTACCAACATCCAAGTACATGTCATTGTTGAATTTACTG
Unaligned ( gi|28 ): AAGCAGTATTTGGAGATCTACGGACTGTTTACTGGTTGGGAAAAGAGAAGTTACCAACATCCAAGTACAAGTTATTGTTGAATTCACTG
Unaligned ( gi|29 ): GGAAAAGAGAAGTTACCAACATCCGAGTACAAGTCATTGTTGAATTTACTG
Alignments
lowQualScore : 1 777 22 22 1
lowQualScore : . ... .. .. .
lowQualScore : 6 111 11 22 9
consensus : GTTATAGTTGTAATTTGCACTTCGCTAGCATCCAGAAAA-AAAGCGATGTTGCTAATTTTAAGGCGACTTAAAACTTCGCCGTGACC--AAAA--AAAAA--AGCGAAGTGACGGAGAAAAAAGCGACT-TTGTCGCCCACGTCGCCCTCTAGTTTGAGCCC
Reference ( family-4361 ) : GTTATAGTTGTAATTTGCACTTCGCTAGCATCCAGAAAA-AAAGCGATGTTGCTAATTTTAAGGCGACTTAAAACTTCGCCGTGACC--AAAA--AAAAA--AGCGAAGTGACGGAGAAAAAAGCGACT-TTGTCGCCCACGTCGCCCTCTAGTTTGAGCCC
gi|1 : GTTATAGTTGTAATTTGCACTTCGCTAGCATCCAGAAAA-AAAGCGATGCTGCTAATTTTAAGGCGACTTAAAACTTCGCCGTGACCA-AAAA--AAAAA--AGCGAAGTAACGGAGAAAACAGCGACT-TTGTCGCCCACGTCGCCCTCTAGTTTGAGCCC
gi|10 : TTATAATTGTTATTTGCACTTCGCTAGCATCCAGAAAA-AAAGCGATATTGCTAATTTTAAGGCGACTTAAAACTTCGTCGTGACC--AAAA--AAAAA--AGCGAAGTGACGGAGAAAAAAGCGACT-TTGTCGCCCACGTCGCCCTATAGTTTGAGCCCtg
gi|11 : TTATAGTTGTGATTTGCACTTCGCTAGCATCCAGAAAA-AAAGCGATGTTGCTAATTTTAAGGCGACTTAAAACTTCGC--TGACC--AAAA--AAAAT--AGCGAAGTGACGGAGAAAAAAGCGACT-TTGTCGCCCACGTCGCCCTCTAGTTTGAGCCCt
gi|12 : GTTATTATTGTAATTTGCACTTGGCTGGCATCCAGAAAA-AA-GTGATGTTGTTAATTTTAAGGCGACTTAAAACTTCGCCGTGACC--ATAA--AAAAA--AGCAAAGTGACCAAGAAAAAAGGGACT-TTGTCGCCCACGT---CCTCTAGTTTGAGCCCtg
gi|13 : GTTATAGTTGTAATTTGCACTTTGCTAGCATCCAGAAAA-AA-GCGATGTTGCTAATTTTAGTGCTACTTAAAACTTCGCCGTGACC--AAAA-----AA--AGCGAAGTGATGGAGAAAAAAGCGACT-TTGTCACCCACGTCGCCCTCTAGTTTGAGCCCtg
gi|14 : TAGTTGTAATTTGCACTTCGCTAGCATCCAGAAAA-AAAGCGATGTTGTTAATTTTAAGGCGACTTAAAACTTCGCCGTGACCA-AAAA--AAAAA--AGCGAAGTGACGGAGAAAAAAGCGACT-TTGTCGCCCA---------CTAGTTCGAGCCCt
gi|15 : ttTTGTAATTTGCACTTCGCTGGCATCCAGAAAA-AAAGCGATGTTGTTAATTT-----------GAAACTTCGCCGTGACC--AAAA---AAAA--AGCGAAGTGACGGAGAAAAAAGCGAGT-TTGTCGCCAACGTCACCCTGTAGTTTGAGCCCt
gi|16 : aGTTATAATTGTAATTTGCACTTCACTGGCAGCCAGAAAA-AA-GCGATGTT---AATTTTAAGGTGACTTAAAACTTTGCCGTGACC----AA--AAAAA--AGCGAAGTGACAGA-AAAAAAGAGACT-TT---------GTCGCCCTGTAGTTTGAGCCtg
gi|17 : TTATAGTTGTAATTTGCACTTCGCTAGCATCCAGAAAA-AAAGCGATGTTGCTAATTTTAAGGCGACTTAAAACTTCGCCGTGACC--AAA-------------------------AAAAAAGCGACT-TTGTCGCCCACGTCGCCCTCTAGTTTGAGCCC
gi|18 : GTTATAATTGTAATTTGCACTTCACTGGCATCCAGAAAA-AA-GCAATGTTGTTAATTTTAAGGCGACTTAAAACTTTGCCTTGACC--AAAAATAAAAA--AGCAAt
gi|19 : GTTATAGTTGTAATTTGCACTTCGCTAGCGTCCAGAAAA-AAAGCGATGTTGCTAATTTTAAGGCGACTTAAAACTTCGCCGTGACC--AAAA--AAAAA--AGCGAAGTGACGGAGAAAAAAGCGACT-TTGTCGctttgttgttagccctgaagcagtatttggag
gi|2 : GTTATAGTTGTTATTTGCACTTCGCTAGCATCCAGAAAA-AAAGCGATGTTGCTAATTTTAAGGCGACTTAAAACTTCGCCGTGACCAAAAAA--AAAAA--AGCGAAGTGACGGAGAAAAAAGCGACT-TTGTCGCCCACGTCGCCCTATAGTTTGAGCCC
gi|21 : GTTATAGTTGTAATTTGCACTTCGCTAGCATCCAGAAAA-AAAGTGATGTTGTTAATTTTAAGGCGACTTAAAACTTCGCCATGACC---AAA--AAAAA--AGCGAAGTGACGGAGAAAAGAGCGACT-TTt
gi|22 : TTATATTTGTAACTTGCACTTCGCTAGCATCCAGAAAA-AAAGCGATGTTGTTAATTTTAAGGCGACTTAAAACTTCGCCGTGACC---AAA--ATAAA--AGCAAAGTGACAGAGAAAAAA
gi|23 : GTTATAGTTGTAATTTGCACTTTGCTAGCATCCAGAAAA--AAGCGATGTTGCTAATTTTAAGGCGACTTAAAACTTCGCCGTGACC----AA--AAAAA--AGCGAAGTGACGGAGt
gi|24 : TGTTAATTTTAAGGCGACTTAAAACTTCGCCTTGACC--AAAA--AAAAA--AGCTAAGTGATGGAGAAAAAAGCACCT-TTGTCGCCCATGTCACCCTCTAGTTTGAGCCC
gi|25 : AAAA-AAAGCAATGTCATTAATTTTAAGGTGACTTGAAACCTCG-----ACC--AGA------------C-------CTTAGAAAA------TTCTTGTTGCCCACATAACCCTCTAGTTCGAGCCCt
gi|26 : GTTATAGTTGTAATTTGCACTTCGCTAGCATCCAGAAAA-AAAGCGATGTTGCTAATTTTAAGGCGACTTAAAACTTCGCCGTGACC--AAAA--AAAAA--tg
gi|27 : GTAATAGTTGTAATTTGTACTTCGCTAGCATCCAGAAAA-AAAGCAATGTTACTAATTTTAAGGCGACTTAAAACTTCGCCGTGACC--CAAA--A
gi|3 : GTTATAGTTGTAATTTGCACTTCGCTAGCATCCAGAAAAAAAAGCGATGTTGTTAATTTTAAGGCGACTTAAAACTTCGCCGTGACC--AAAA--AAAAAATAGAGAAGTGACAGAGAAAAAAGCGACT-TTGTCGCCCACGTCACCCTCTAGTTTGAGCC
gi|4 : GTTATAGTTGTAATTTGCACTTCACTAGCATCCAGAAAA-AAAGCGATTTTGTTAATTTTAAGGCGACTTACAACTTCGCTGTGACC--AAAA--GAAAA--AGCGAAGTGACGGAGAAAAAAGCGACT-TTGTCGCCTATGTCGCCCTCTAGTTTGAGCCC
gi|5 : GTTATAGTTGTTATTTGCACTTCGCTAGCATCCAGAAAA-AAAGCGATGTTGCTAATTTTAAGGCGACTTAAAACTCCGCCGTGACC--CCAA--AAAAA--AGCGAAGCGATGTAGAAAAAAGCGACT-TTGTCGCCCACGTCGCCCTATAGTTTGAGCCCtg
gi|6 : TTATAGTTGTTATTTGCACTTCGCTATTATCCAGAAAA-AAAGCGATGTTGCTAATTTTAAGGCGACTTAAAACTTCGCCGTGACC--AAAA--AAAAA--AGCGAAGTGACGGAGAAAAAAGCGACT-TTGTCGCCCACGTCGCCCTATAGTTTGAGCCCt
gi|7 : GTTATAGTTGTAATTTGCACTTCGCTAGCATCCAGAAAA-AAAGCGATGTTGCTAATTTTAAGGCGACTTAAAACTTCGCCGTTACC--AAAA--AAAAA--AGCGAAGTGACGGAGAAAAAAGCGACT-TTGTCGCCCACGTCGCCCTCTAGTTTGAGCCCtg
gi|8 : GTTATAGTTGTAATTTGCACTTCGCTTGCATCCAGAAAA-AAAGCGATGTTGCTAATTTTAAGGCGACTTAAAACTTCGC--TGACC--AAAA--AAAAT--AGCGAAGTGACGGAGAAAAAAGCGACT-TTGTCGCCCACGTCGCCCTCTAGTTTGAGCCC
gi|9 : GTTATAGTTGTAATTTGCACTTCGCTAGCATCCAG-AAA-AAAGCGATGTTGTTAATTTTAACGAGACTTAAAACTTCGCTGTGACCA-AAAA--AAAAA--AGTGAAGTGACGGAGAAAAAAACGACT-TTGTCGCCGACGTCGCCCTCTAGTTTGAGCCCtg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): AAAAGCAAACACAGTTAACTTCGTTAAAAAACAATGAAGCAGCATTTGGAGCTCTAGGGACTGTTTACTGGTGGGGAAAAGAGAAGTTACCAACATCCAAGTACATGTCATTGTTGAATTTACTG
Unaligned ( gi|28 ): AAGCAGTATTTGGAGATCTACGGACTGTTTACTGGTTGGGAAAAGAGAAGTTACCAACATCCAAGTACAAGTTATTGTTGAATTCACTG
Unaligned ( gi|29 ): GGAAAAGAGAAGTTACCAACATCCGAGTACAAGTCATTGTTGAATTTACTG